Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	
ACADM	34	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	76205772	76205772	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4982-01A-01D-1462-08	TCGA-BP-4982-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84591a73-bed0-4ad5-9acd-8f31acf27af0	7e643798-5764-43b3-bd79-a92f2c34415b	
ACIN1	22985	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	23549183	23549183	+	Missense_Mutation	SNP	T	T	A	rs112438189	alternate_allele	TCGA-BP-4982-01A-01D-1462-08	TCGA-BP-4982-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84591a73-bed0-4ad5-9acd-8f31acf27af0	7e643798-5764-43b3-bd79-a92f2c34415b	
AGRN	375790	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	970662	970662	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4982-01A-01D-1462-08	TCGA-BP-4982-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84591a73-bed0-4ad5-9acd-8f31acf27af0	7e643798-5764-43b3-bd79-a92f2c34415b	
AP4B1	10717	broad.mit.edu;ucsc.edu	37	1	114439000	114439000	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-BP-4982-01A-01D-1462-08	TCGA-BP-4982-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	84591a73-bed0-4ad5-9acd-8f31acf27af0	7e643798-5764-43b3-bd79-a92f2c34415b	
AZU1	566	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	830861	830861	+	Missense_Mutation	SNP	G	G	A	rs145363133		TCGA-BP-4982-01A-01D-1462-08	TCGA-BP-4982-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84591a73-bed0-4ad5-9acd-8f31acf27af0	7e643798-5764-43b3-bd79-a92f2c34415b	
BPI	671	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	36946865	36946865	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4982-01A-01D-1462-08	TCGA-BP-4982-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84591a73-bed0-4ad5-9acd-8f31acf27af0	7e643798-5764-43b3-bd79-a92f2c34415b	
C1orf65	164127	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	223568377	223568377	+	Silent	SNP	C	C	T	novel		TCGA-BP-4982-01A-01D-1462-08	TCGA-BP-4982-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84591a73-bed0-4ad5-9acd-8f31acf27af0	7e643798-5764-43b3-bd79-a92f2c34415b	
C3orf17	25871	broad.mit.edu;hgsc.bcm.edu	37	3	112732116	112732116	+	RNA	SNP	T	T	C	novel		TCGA-BP-4982-01A-01D-1462-08	TCGA-BP-4982-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84591a73-bed0-4ad5-9acd-8f31acf27af0	7e643798-5764-43b3-bd79-a92f2c34415b	
CCDC59	29080	hgsc.bcm.edu;ucsc.edu	37	12	82752142	82752143	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-BP-4982-01A-01D-1462-08	TCGA-BP-4982-11A-01D-1462-08	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84591a73-bed0-4ad5-9acd-8f31acf27af0	7e643798-5764-43b3-bd79-a92f2c34415b	
CLCC1	23155	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	109482394	109482394	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-4982-01A-01D-1462-08	TCGA-BP-4982-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84591a73-bed0-4ad5-9acd-8f31acf27af0	7e643798-5764-43b3-bd79-a92f2c34415b	
CUX1	1523	broad.mit.edu;hgsc.bcm.edu	37	7	101813771	101813771	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4982-01A-01D-1462-08	TCGA-BP-4982-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84591a73-bed0-4ad5-9acd-8f31acf27af0	7e643798-5764-43b3-bd79-a92f2c34415b	
FTL	2512	broad.mit.edu;hgsc.bcm.edu	37	19	49468842	49468842	+	Silent	SNP	G	G	A	rs11553227	alternate_allele	TCGA-BP-4982-01A-01D-1462-08	TCGA-BP-4982-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84591a73-bed0-4ad5-9acd-8f31acf27af0	7e643798-5764-43b3-bd79-a92f2c34415b	
GLDN	342035	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	51696755	51696755	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4982-01A-01D-1462-08	TCGA-BP-4982-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84591a73-bed0-4ad5-9acd-8f31acf27af0	7e643798-5764-43b3-bd79-a92f2c34415b	
HPSE2	60495	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	100481428	100481428	+	Silent	SNP	G	G	A	rs142810016	alternate_allele	TCGA-BP-4982-01A-01D-1462-08	TCGA-BP-4982-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84591a73-bed0-4ad5-9acd-8f31acf27af0	7e643798-5764-43b3-bd79-a92f2c34415b	
KRTAP10-3	386682	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	45978577	45978577	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4982-01A-01D-1462-08	TCGA-BP-4982-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84591a73-bed0-4ad5-9acd-8f31acf27af0	7e643798-5764-43b3-bd79-a92f2c34415b	
LUC7L3	51747	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	48818534	48818534	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4982-01A-01D-1462-08	TCGA-BP-4982-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84591a73-bed0-4ad5-9acd-8f31acf27af0	7e643798-5764-43b3-bd79-a92f2c34415b	
NDE1	54820	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	15761201	15761201	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4982-01A-01D-1462-08	TCGA-BP-4982-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84591a73-bed0-4ad5-9acd-8f31acf27af0	7e643798-5764-43b3-bd79-a92f2c34415b	
NDE1	54820	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	15761202	15761202	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-4982-01A-01D-1462-08	TCGA-BP-4982-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84591a73-bed0-4ad5-9acd-8f31acf27af0	7e643798-5764-43b3-bd79-a92f2c34415b	
NDUFAF3	25915	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	49059885	49059885	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-4982-01A-01D-1462-08	TCGA-BP-4982-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84591a73-bed0-4ad5-9acd-8f31acf27af0	7e643798-5764-43b3-bd79-a92f2c34415b	
NIT2	56954	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	100059917	100059917	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4982-01A-01D-1462-08	TCGA-BP-4982-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84591a73-bed0-4ad5-9acd-8f31acf27af0	7e643798-5764-43b3-bd79-a92f2c34415b	
NIT2	56954	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	100059918	100059918	+	Silent	SNP	C	C	T	novel		TCGA-BP-4982-01A-01D-1462-08	TCGA-BP-4982-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84591a73-bed0-4ad5-9acd-8f31acf27af0	7e643798-5764-43b3-bd79-a92f2c34415b	
OR2H2	7932	broad.mit.edu;hgsc.bcm.edu	37	6	29556320	29556320	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-4982-01A-01D-1462-08	TCGA-BP-4982-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84591a73-bed0-4ad5-9acd-8f31acf27af0	7e643798-5764-43b3-bd79-a92f2c34415b	
PARP1	142	broad.mit.edu;ucsc.edu	37	1	226564845	226564845	+	Silent	SNP	G	C	C	novel		TCGA-BP-4982-01A-01D-1462-08	TCGA-BP-4982-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	84591a73-bed0-4ad5-9acd-8f31acf27af0	7e643798-5764-43b3-bd79-a92f2c34415b	
PBRM1	55193	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	52702612	52702612	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-BP-4982-01A-01D-1462-08	TCGA-BP-4982-11A-01D-1462-08	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	84591a73-bed0-4ad5-9acd-8f31acf27af0	7e643798-5764-43b3-bd79-a92f2c34415b	
PLB1	151056	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	28752200	28752200	+	Silent	SNP	C	C	A	novel		TCGA-BP-4982-01A-01D-1462-08	TCGA-BP-4982-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84591a73-bed0-4ad5-9acd-8f31acf27af0	7e643798-5764-43b3-bd79-a92f2c34415b	
PSMF1	9491	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	1144992	1144992	+	Silent	SNP	C	C	T	novel		TCGA-BP-4982-01A-01D-1462-08	TCGA-BP-4982-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84591a73-bed0-4ad5-9acd-8f31acf27af0	7e643798-5764-43b3-bd79-a92f2c34415b	
RABEP1	9135	hgsc.bcm.edu	37	17	5268432	5268432	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4982-01A-01D-1462-08	TCGA-BP-4982-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84591a73-bed0-4ad5-9acd-8f31acf27af0	7e643798-5764-43b3-bd79-a92f2c34415b	
SCAP	22937	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	47455554	47455554	+	Silent	SNP	T	T	A	novel		TCGA-BP-4982-01A-01D-1462-08	TCGA-BP-4982-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84591a73-bed0-4ad5-9acd-8f31acf27af0	7e643798-5764-43b3-bd79-a92f2c34415b	
SETBP1	26040	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	18	42531862	42531862	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-4982-01A-01D-1462-08	TCGA-BP-4982-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84591a73-bed0-4ad5-9acd-8f31acf27af0	7e643798-5764-43b3-bd79-a92f2c34415b	
SKIV2L2	23517	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	54618206	54618206	+	Silent	SNP	T	T	C	novel		TCGA-BP-4982-01A-01D-1462-08	TCGA-BP-4982-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84591a73-bed0-4ad5-9acd-8f31acf27af0	7e643798-5764-43b3-bd79-a92f2c34415b	
SPAG8	26206	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	35810979	35810979	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-4982-01A-01D-1462-08	TCGA-BP-4982-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84591a73-bed0-4ad5-9acd-8f31acf27af0	7e643798-5764-43b3-bd79-a92f2c34415b	
ST8SIA3	51046	broad.mit.edu;ucsc.edu	37	18	55020256	55020256	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-BP-4982-01A-01D-1462-08	TCGA-BP-4982-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	84591a73-bed0-4ad5-9acd-8f31acf27af0	7e643798-5764-43b3-bd79-a92f2c34415b	
SUPV3L1	6832	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	70967647	70967647	+	Silent	SNP	C	C	A	novel		TCGA-BP-4982-01A-01D-1462-08	TCGA-BP-4982-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84591a73-bed0-4ad5-9acd-8f31acf27af0	7e643798-5764-43b3-bd79-a92f2c34415b	
SYT15	83849	broad.mit.edu;hgsc.bcm.edu	37	10	46968685	46968685	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4982-01A-01D-1462-08	TCGA-BP-4982-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84591a73-bed0-4ad5-9acd-8f31acf27af0	7e643798-5764-43b3-bd79-a92f2c34415b	
TCP11	6954	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	35086135	35086135	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-4982-01A-01D-1462-08	TCGA-BP-4982-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84591a73-bed0-4ad5-9acd-8f31acf27af0	7e643798-5764-43b3-bd79-a92f2c34415b	
UBE2H	7328	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	129592346	129592346	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4982-01A-01D-1462-08	TCGA-BP-4982-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84591a73-bed0-4ad5-9acd-8f31acf27af0	7e643798-5764-43b3-bd79-a92f2c34415b	
UBL4B	164153	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	110655193	110655193	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-4982-01A-01D-1462-08	TCGA-BP-4982-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84591a73-bed0-4ad5-9acd-8f31acf27af0	7e643798-5764-43b3-bd79-a92f2c34415b	
WHSC1L1	54904	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	38173525	38173525	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-4982-01A-01D-1462-08	TCGA-BP-4982-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84591a73-bed0-4ad5-9acd-8f31acf27af0	7e643798-5764-43b3-bd79-a92f2c34415b	
XPC	7508	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	14188848	14188848	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-4982-01A-01D-1462-08	TCGA-BP-4982-11A-01D-1462-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84591a73-bed0-4ad5-9acd-8f31acf27af0	7e643798-5764-43b3-bd79-a92f2c34415b	
ZNF283	284349	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	44352476	44352476	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BP-4982-01A-01D-1462-08	TCGA-BP-4982-11A-01D-1462-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84591a73-bed0-4ad5-9acd-8f31acf27af0	7e643798-5764-43b3-bd79-a92f2c34415b	
ACOT7	11332	broad.mit.edu	37	1	6387379	6387379	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-BP-4982-01A-01D-1462-08	TCGA-BP-4982-11A-01D-1462-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	84591a73-bed0-4ad5-9acd-8f31acf27af0	7e643798-5764-43b3-bd79-a92f2c34415b	
Unknown	0	broad.mit.edu	37	15	102292829	102292829	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-BP-4982-01A-01D-1462-08	TCGA-BP-4982-11A-01D-1462-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	84591a73-bed0-4ad5-9acd-8f31acf27af0	7e643798-5764-43b3-bd79-a92f2c34415b	
VHL	7428	broad.mit.edu	37	3	10183794	10183794	+	Nonsense_Mutation	SNP	G	A	A	rs119103277	alternate_allele	TCGA-BP-4982-01A-01D-1462-08	TCGA-BP-4982-11A-01D-1462-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454;Illumina Miseq;PacBio			Illumina GAIIx	84591a73-bed0-4ad5-9acd-8f31acf27af0	7e643798-5764-43b3-bd79-a92f2c34415b	
