Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
ARID1A	8289	genome.wustl.edu	37	1	27107144	27107145	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-BS-A0V6-01A-11D-A122-09	TCGA-BS-A0V6-10A-01D-A122-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfcbd004-49f9-4608-87bd-94c76fb8bb41	3bb254a7-a995-4bd3-b178-22491beafaf0	NM_006015.4	+1	reviewed	p.L2253fs	1.000:0.966	-	-	-	-	-	-	-	-	-	NULL
ARID1A	8289	genome.wustl.edu	37	1	27107150	27107156	+	Frame_Shift_Del	DEL	ACGAATC	ACGAATC	-	novel		TCGA-BS-A0V6-01A-11D-A122-09	TCGA-BS-A0V6-10A-01D-A122-09	ACGAATC	ACGAATC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfcbd004-49f9-4608-87bd-94c76fb8bb41	3bb254a7-a995-4bd3-b178-22491beafaf0	NM_006015.4	+1	reviewed	p.E2255fs	1.000:0.857:1.000:1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
LPPR4	9890	genome.wustl.edu	37	1	99753536	99753536	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0V6-01A-11D-A122-09	TCGA-BS-A0V6-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfcbd004-49f9-4608-87bd-94c76fb8bb41	3bb254a7-a995-4bd3-b178-22491beafaf0	NM_014839.4	+1	reviewed	p.S80P	0.996	303	0%	227	26.9%	-	-	probably_damaging(0.966)	tolerated(0.07)	deleterious(0.727)	superfamily_Acid phosphatase/Vanadium-dependent haloperoxidase
CD1E	913	genome.wustl.edu	37	1	158324220	158324220	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0V6-01A-11D-A122-09	TCGA-BS-A0V6-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfcbd004-49f9-4608-87bd-94c76fb8bb41	3bb254a7-a995-4bd3-b178-22491beafaf0	NM_030893.2	+1	reviewed	p.R38C	0.001	227	0%	207	25.6%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_MHC antigen-recognition domain
RNASEL	6041	genome.wustl.edu	37	1	182555014	182555014	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0V6-01A-11D-A122-09	TCGA-BS-A0V6-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfcbd004-49f9-4608-87bd-94c76fb8bb41	3bb254a7-a995-4bd3-b178-22491beafaf0	NM_021133.2	-1	reviewed	p.R310W	0.000	96	0%	68	16.2%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Ank,superfamily_Ankyrin repeat
GPR75	10936	genome.wustl.edu	37	2	54081461	54081461	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0V6-01A-11D-A122-09	TCGA-BS-A0V6-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfcbd004-49f9-4608-87bd-94c76fb8bb41	3bb254a7-a995-4bd3-b178-22491beafaf0	NM_006794.2	-1	validated	p.R145W	1.000	146	0.7%	93	25.8%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
CCDC88A	55704	genome.wustl.edu	37	2	55559789	55559789	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0V6-01A-11D-A122-09	TCGA-BS-A0V6-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfcbd004-49f9-4608-87bd-94c76fb8bb41	3bb254a7-a995-4bd3-b178-22491beafaf0	NM_001135597.1	-1	validated	p.N923S	1.000	579	0%	509	27.3%	-	-	benign(0.004)	tolerated(1)	-	NULL
TMEM150A	129303	genome.wustl.edu	37	2	85827094	85827094	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0V6-01A-11D-A122-09	TCGA-BS-A0V6-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfcbd004-49f9-4608-87bd-94c76fb8bb41	3bb254a7-a995-4bd3-b178-22491beafaf0	NM_001031738.2	-1	validated	p.R106W	1.000	92	1.1%	72	37.5%	-	-	possibly_damaging(0.847)	tolerated(0.19)	neutral(0.374)	HMMPfam_Frag1
IHH	3549	genome.wustl.edu	37	2	219920333	219920334	+	Frame_Shift_Ins	INS	-	-	GAGCAGGG	novel		TCGA-BS-A0V6-01A-11D-A122-09	TCGA-BS-A0V6-10A-01D-A122-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfcbd004-49f9-4608-87bd-94c76fb8bb41	3bb254a7-a995-4bd3-b178-22491beafaf0	NM_002181.3	-1	reviewed	p.F277fs	1.000:0.995	-	-	-	-	-	-	-	-	-	HMMPfam_Hint,HMMSmart_SM00306,superfamily_Hedgehog/intein (Hint) domain
CNTN4	152330	genome.wustl.edu	37	3	3067958	3067958	+	Silent	SNP	A	A	T	novel		TCGA-BS-A0V6-01A-11D-A122-09	TCGA-BS-A0V6-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfcbd004-49f9-4608-87bd-94c76fb8bb41	3bb254a7-a995-4bd3-b178-22491beafaf0	NM_175607.1	+1	reviewed	p.G553	1.000	308	0%	252	31.3%	-	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
PARP3	10039	genome.wustl.edu	37	3	51979926	51979926	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0V6-01A-11D-A122-09	TCGA-BS-A0V6-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfcbd004-49f9-4608-87bd-94c76fb8bb41	3bb254a7-a995-4bd3-b178-22491beafaf0	NM_001003931.2	+1	reviewed	p.H364Y	0.132	92	0%	92	19.6%	-	-	benign(0.399)	deleterious(0.03)	deleterious(0.493)	HMMPfam_PARP,superfamily_SSF56399
TOPBP1	11073	genome.wustl.edu	37	3	133342956	133342956	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0V6-01A-11D-A122-09	TCGA-BS-A0V6-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfcbd004-49f9-4608-87bd-94c76fb8bb41	3bb254a7-a995-4bd3-b178-22491beafaf0	NM_007027.3	-1	reviewed	p.R956	0.944	398	0%	292	23.6%	-	-	-	-	-	HMMPfam_BRCT,HMMSmart_SM00292,superfamily_BRCT domain
PIK3CA	5290	genome.wustl.edu	37	3	178916944	178916944	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0V6-01A-11D-A122-09	TCGA-BS-A0V6-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfcbd004-49f9-4608-87bd-94c76fb8bb41	3bb254a7-a995-4bd3-b178-22491beafaf0	NM_006218.2	+1	reviewed	p.K111E	1.000	166	0%	101	31.7%	-	-	probably_damaging(0.984)	deleterious(0.04)	deleterious(0.779)	superfamily_SSF54236
PIK3CA	5290	genome.wustl.edu	37	3	178948044	178948044	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0V6-01A-11D-A122-09	TCGA-BS-A0V6-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfcbd004-49f9-4608-87bd-94c76fb8bb41	3bb254a7-a995-4bd3-b178-22491beafaf0	NM_006218.2	+1	reviewed	p.D939G	1.000	191	0%	126	32.5%	-	-	benign(0.006)	tolerated(1)	-	HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,superfamily_Kinase_like
GABRA4	2557	genome.wustl.edu	37	4	46973109	46973109	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0V6-01A-11D-A122-09	TCGA-BS-A0V6-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfcbd004-49f9-4608-87bd-94c76fb8bb41	3bb254a7-a995-4bd3-b178-22491beafaf0	NM_000809.2	-1	reviewed	p.T289A	1.000	171	0%	110	32.7%	-	-	probably_damaging(0.988)	tolerated(0.08)	deleterious(0.738)	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
LOC100288413	100288413	genome.wustl.edu	37	4	53611679	53611679	+	Silent	SNP	G	G	C	novel		TCGA-BS-A0V6-01A-11D-A122-09	TCGA-BS-A0V6-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfcbd004-49f9-4608-87bd-94c76fb8bb41	3bb254a7-a995-4bd3-b178-22491beafaf0	XM_002342451.1	-1	model	p.S3	0.420	121	0%	109	31.2%	-	-	-	-	-	NULL
LOC644578	644578	genome.wustl.edu	37	4	64215845	64215845	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0V6-01A-11D-A122-09	TCGA-BS-A0V6-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfcbd004-49f9-4608-87bd-94c76fb8bb41	3bb254a7-a995-4bd3-b178-22491beafaf0	XM_927694.2	+1	model	p.R165Q	1.000	217	0%	206	28.2%	-	-	-	-	-	NULL
IL2	3558	genome.wustl.edu	37	4	123374885	123374885	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0V6-01A-11D-A122-09	TCGA-BS-A0V6-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfcbd004-49f9-4608-87bd-94c76fb8bb41	3bb254a7-a995-4bd3-b178-22491beafaf0	NM_000586.3	-1	reviewed	p.V111L	0.000	463	0%	375	24%	-	-	benign(0.306)	tolerated(0.18)	neutral(0.151)	HMMPfam_IL2,HMMSmart_SM00189,superfamily_4-helical cytokines
GPM6A	2823	genome.wustl.edu	37	4	176561951	176561951	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0V6-01A-11D-A122-09	TCGA-BS-A0V6-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfcbd004-49f9-4608-87bd-94c76fb8bb41	3bb254a7-a995-4bd3-b178-22491beafaf0	NM_005277.3	-1	validated	p.I191F	1.000	420	0%	326	25.8%	-	-	benign(0.014)	deleterious(0)	neutral(0.445)	HMMPfam_Myelin_PLP,HMMSmart_SM00002
GCNT4	51301	genome.wustl.edu	37	5	74325746	74325746	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0V6-01A-11D-A122-09	TCGA-BS-A0V6-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfcbd004-49f9-4608-87bd-94c76fb8bb41	3bb254a7-a995-4bd3-b178-22491beafaf0	NM_016591.2	-1	validated	p.P39	0.001	140	0%	111	29.7%	-	-	-	-	-	NULL
MAT2B	27430	genome.wustl.edu	37	5	162943642	162943642	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BS-A0V6-01A-11D-A122-09	TCGA-BS-A0V6-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfcbd004-49f9-4608-87bd-94c76fb8bb41	3bb254a7-a995-4bd3-b178-22491beafaf0	NM_013283.3	+1	reviewed	p.H215Q	1.000	298	0%	191	37.2%	-	-	probably_damaging(0.991)	tolerated(0.14)	deleterious(0.694)	HMMPfam_RmlD_sub_bind,superfamily_NAD(P)-binding Rossmann-fold domains
B4GALT7	11285	genome.wustl.edu	37	5	177034457	177034457	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0V6-01A-11D-A122-09	TCGA-BS-A0V6-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfcbd004-49f9-4608-87bd-94c76fb8bb41	3bb254a7-a995-4bd3-b178-22491beafaf0	NM_007255.2	+1	reviewed	p.L190F	1.000	35	0%	31	19.4%	-	-	possibly_damaging(0.526)	tolerated(0.1)	neutral(0.464)	HMMPfam_Galactosyl_T_2,superfamily_Nucleotide-diphospho-sugar transferases
PKHD1	5314	genome.wustl.edu	37	6	51637531	51637531	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0V6-01A-11D-A122-09	TCGA-BS-A0V6-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfcbd004-49f9-4608-87bd-94c76fb8bb41	3bb254a7-a995-4bd3-b178-22491beafaf0	NM_138694.3	-1	reviewed	p.L2871I	0.998	474	0.4%	447	27.1%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_G8
CPVL	54504	genome.wustl.edu	37	7	29152438	29152438	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0V6-01A-11D-A122-09	TCGA-BS-A0V6-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfcbd004-49f9-4608-87bd-94c76fb8bb41	3bb254a7-a995-4bd3-b178-22491beafaf0	NM_019029.2	-1	reviewed	p.G57E	0.976	168	0.6%	134	25.4%	-	-	possibly_damaging(0.768)	tolerated(0.13)	deleterious(0.537)	superfamily_alpha/beta-Hydrolases
KCNK9	51305	genome.wustl.edu	37	8	140631178	140631178	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0V6-01A-11D-A122-09	TCGA-BS-A0V6-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfcbd004-49f9-4608-87bd-94c76fb8bb41	3bb254a7-a995-4bd3-b178-22491beafaf0	NM_016601.2	-1	reviewed	p.R150C	1.000	86	0%	108	31.5%	-	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	superfamily_SSF81324
KAT6B	23522	genome.wustl.edu	37	10	76789602	76789602	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0V6-01A-11D-A122-09	TCGA-BS-A0V6-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfcbd004-49f9-4608-87bd-94c76fb8bb41	3bb254a7-a995-4bd3-b178-22491beafaf0	NM_012330.2	+1	validated	p.E1674K	1.000	74	0%	68	22.1%	-	-	probably_damaging(0.987)	-	-	NULL
PTEN	5728	genome.wustl.edu	37	10	89692923	89692923	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0V6-01A-11D-A122-09	TCGA-BS-A0V6-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfcbd004-49f9-4608-87bd-94c76fb8bb41	3bb254a7-a995-4bd3-b178-22491beafaf0	ENST00000371953	+1	known	p.C136F	1.000	390	0%	288	20.1%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_DSPc,HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
MUC5B	727897	genome.wustl.edu	37	11	1271703	1271703	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0V6-01A-11D-A122-09	TCGA-BS-A0V6-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfcbd004-49f9-4608-87bd-94c76fb8bb41	3bb254a7-a995-4bd3-b178-22491beafaf0	NM_002458.1	+1	validated	p.G4534	0.000	540	0%	633	19%	-	-	-	-	-	NULL
SBF2	81846	genome.wustl.edu	37	11	9874235	9874235	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0V6-01A-11D-A122-09	TCGA-BS-A0V6-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfcbd004-49f9-4608-87bd-94c76fb8bb41	3bb254a7-a995-4bd3-b178-22491beafaf0	NM_030962.3	-1	reviewed	p.P866	0.900	277	0%	227	30%	-	-	-	-	-	NULL
ANO3	63982	genome.wustl.edu	37	11	26681884	26681884	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0V6-01A-11D-A122-09	TCGA-BS-A0V6-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfcbd004-49f9-4608-87bd-94c76fb8bb41	3bb254a7-a995-4bd3-b178-22491beafaf0	NM_031418.2	+1	validated	p.R947*	1.000	254	0%	159	33.3%	-	-	-	-	-	HMMPfam_DUF590
OR4A15	81328	genome.wustl.edu	37	11	55136133	55136133	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BS-A0V6-01A-11D-A122-09	TCGA-BS-A0V6-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfcbd004-49f9-4608-87bd-94c76fb8bb41	3bb254a7-a995-4bd3-b178-22491beafaf0	NM_001005275.1	+1	provisional	p.L258F	0.000	478	0%	454	31.5%	-	-	benign(0.057)	deleterious(0.04)	neutral(0.352)	HMMPfam_7tm_1,superfamily_SSF81321
OR10G9	219870	genome.wustl.edu	37	11	123894500	123894500	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0V6-01A-11D-A122-09	TCGA-BS-A0V6-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfcbd004-49f9-4608-87bd-94c76fb8bb41	3bb254a7-a995-4bd3-b178-22491beafaf0	NM_001001953.1	+1	provisional	p.P261T	0.922	416	0%	399	32.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
GLB1L3	112937	genome.wustl.edu	37	11	134151937	134151937	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0V6-01A-11D-A122-09	TCGA-BS-A0V6-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfcbd004-49f9-4608-87bd-94c76fb8bb41	3bb254a7-a995-4bd3-b178-22491beafaf0	NM_001080407.2	+1	validated	p.A150	0.011	105	0%	91	31.9%	-	-	-	-	-	HMMPfam_Glyco_hydro_35,superfamily_(Trans)glycosidases
BEST3	144453	genome.wustl.edu	37	12	70070771	70070771	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0V6-01A-11D-A122-09	TCGA-BS-A0V6-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfcbd004-49f9-4608-87bd-94c76fb8bb41	3bb254a7-a995-4bd3-b178-22491beafaf0	NM_032735.2	-1	validated	p.Y264	0.949	171	0%	101	23.8%	-	-	-	-	-	HMMPfam_Bestrophin
GAS6	2621	genome.wustl.edu	37	13	114535848	114535848	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0V6-01A-11D-A122-09	TCGA-BS-A0V6-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfcbd004-49f9-4608-87bd-94c76fb8bb41	3bb254a7-a995-4bd3-b178-22491beafaf0	ENST00000357389	-1	known	p.A281T	0.000	3	0.000	6	0.833	-	-	benign(0.003)	deleterious(0.04)	neutral(0.349)	superfamily_Concanavalin A-like lectins/glucanases
NUSAP1	51203	genome.wustl.edu	37	15	41643209	41643209	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0V6-01A-11D-A122-09	TCGA-BS-A0V6-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfcbd004-49f9-4608-87bd-94c76fb8bb41	3bb254a7-a995-4bd3-b178-22491beafaf0	NM_016359.3	+1	validated	p.I110M	0.007	172	0%	121	29.8%	-	-	benign(0.126)	tolerated(0.2)	neutral(0.060)	NULL
MAN2A2	4122	genome.wustl.edu	37	15	91450664	91450664	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0V6-01A-11D-A122-09	TCGA-BS-A0V6-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfcbd004-49f9-4608-87bd-94c76fb8bb41	3bb254a7-a995-4bd3-b178-22491beafaf0	NM_006122.2	+1	validated	p.R379C	1.000	78	0%	78	29.5%	-	-	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	HMMPfam_Glyco_hydro_38,superfamily_Glyco_hydro/deAcase_b/a-brl
ABCA3	21	genome.wustl.edu	37	16	2338188	2338188	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0V6-01A-11D-A122-09	TCGA-BS-A0V6-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfcbd004-49f9-4608-87bd-94c76fb8bb41	3bb254a7-a995-4bd3-b178-22491beafaf0	NM_001089.2	-1	reviewed	p.S948L	1.000	50	0%	52	21.2%	-	-	benign(0.005)	tolerated(0.84)	neutral(0.001)	NULL
AMDHD2	51005	genome.wustl.edu	37	16	2579481	2579481	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0V6-01A-11D-A122-09	TCGA-BS-A0V6-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfcbd004-49f9-4608-87bd-94c76fb8bb41	3bb254a7-a995-4bd3-b178-22491beafaf0	NM_015944.3	+1	validated	p.V413M	1.000	48	0%	44	31.8%	-	-	possibly_damaging(0.874)	deleterious(0)	deleterious(0.784)	HMMPfam_Amidohydro_1,superfamily_Metalo_hydrolase
CTCF	10664	genome.wustl.edu	37	16	67662338	67662338	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0V6-01A-11D-A122-09	TCGA-BS-A0V6-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfcbd004-49f9-4608-87bd-94c76fb8bb41	3bb254a7-a995-4bd3-b178-22491beafaf0	NM_006565.2	+1	reviewed	p.C528*	1.000	198	0%	197	28.9%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF469	84627	genome.wustl.edu	37	16	88494824	88494824	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0V6-01A-11D-A122-09	TCGA-BS-A0V6-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfcbd004-49f9-4608-87bd-94c76fb8bb41	3bb254a7-a995-4bd3-b178-22491beafaf0	NM_001127464.1	+1	reviewed	p.E316K	0.003	7	0.000	11	0.455	-	-	probably_damaging(0.957)	deleterious(0)	deleterious(0.845)	NULL
RAP1GAP2	23108	genome.wustl.edu	37	17	2867192	2867192	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0V6-01A-11D-A122-09	TCGA-BS-A0V6-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfcbd004-49f9-4608-87bd-94c76fb8bb41	3bb254a7-a995-4bd3-b178-22491beafaf0	NM_015085.4	+1	reviewed	p.Q108K	1.000	49	0%	54	22.2%	-	-	possibly_damaging(0.637)	tolerated(0.08)	deleterious(0.523)	NULL
PER1	5187	genome.wustl.edu	37	17	8051032	8051032	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0V6-01A-11D-A122-09	TCGA-BS-A0V6-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfcbd004-49f9-4608-87bd-94c76fb8bb41	3bb254a7-a995-4bd3-b178-22491beafaf0	NM_002616.2	-1	reviewed	p.R450C	1.000	29	0%	28	42.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PAS_3,superfamily_PYP-like sensor domain (PAS domain)
ELAC2	60528	genome.wustl.edu	37	17	12905832	12905832	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0V6-01A-11D-A122-09	TCGA-BS-A0V6-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfcbd004-49f9-4608-87bd-94c76fb8bb41	3bb254a7-a995-4bd3-b178-22491beafaf0	NM_018127.6	-1	reviewed	p.S382G	1.000	468	0%	478	26.6%	-	-	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	NULL
CDK5R1	8851	genome.wustl.edu	37	17	30815433	30815433	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0V6-01A-11D-A122-09	TCGA-BS-A0V6-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfcbd004-49f9-4608-87bd-94c76fb8bb41	3bb254a7-a995-4bd3-b178-22491beafaf0	NM_003885.2	+1	reviewed	p.I265	1.000	175	0%	145	39.3%	-	-	-	-	-	HMMPfam_CDK5_activator,superfamily_Cyclin-like
GPATCH8	23131	genome.wustl.edu	37	17	42541838	42541838	+	Splice_Site	SNP	A	A	C	novel		TCGA-BS-A0V6-01A-11D-A122-09	TCGA-BS-A0V6-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfcbd004-49f9-4608-87bd-94c76fb8bb41	3bb254a7-a995-4bd3-b178-22491beafaf0	NM_001002909.1	-1	validated	e3+2	1.000	372	0.3%	312	23.7%	-	-	-	-	-	-
BAHCC1	57597	genome.wustl.edu	37	17	79409985	79409985	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0V6-01A-11D-A122-09	TCGA-BS-A0V6-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfcbd004-49f9-4608-87bd-94c76fb8bb41	3bb254a7-a995-4bd3-b178-22491beafaf0	ENST00000436173	+1	known	p.G537E	0.489	15	0%	16	31.2%	-	-	probably_damaging(0.999)	tolerated(0.12)	deleterious(0.751)	NULL
CCBE1	147372	genome.wustl.edu	37	18	57136802	57136802	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0V6-01A-11D-A122-09	TCGA-BS-A0V6-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfcbd004-49f9-4608-87bd-94c76fb8bb41	3bb254a7-a995-4bd3-b178-22491beafaf0	NM_133459.3	-1	reviewed	p.Q101H	1.000	116	0%	88	29.5%	-	-	probably_damaging(0.996)	-	-	HMMSmart_SM00179,HMMSmart_SM00181,superfamily_EGF/Laminin
LOC400682	400682	genome.wustl.edu	37	19	21838635	21838635	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0V6-01A-11D-A122-09	TCGA-BS-A0V6-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfcbd004-49f9-4608-87bd-94c76fb8bb41	3bb254a7-a995-4bd3-b178-22491beafaf0	XM_001726878.1	+1	model	p.H120	0.673	55	0%	68	22.1%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
MLL4	9757	genome.wustl.edu	37	19	36229292	36229292	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0V6-01A-11D-A122-09	TCGA-BS-A0V6-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfcbd004-49f9-4608-87bd-94c76fb8bb41	3bb254a7-a995-4bd3-b178-22491beafaf0	NM_014727.1	+1	reviewed	p.S2661F	1.000	101	0%	127	30.7%	-	-	probably_damaging(1)	-	-	HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain
PSG11	5680	genome.wustl.edu	37	19	43529182	43529182	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0V6-01A-11D-A122-09	TCGA-BS-A0V6-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfcbd004-49f9-4608-87bd-94c76fb8bb41	3bb254a7-a995-4bd3-b178-22491beafaf0	NM_002785.2	-1	validated	p.P31S	0.001	346	0%	350	51.4%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_V-set
TOX2	84969	genome.wustl.edu	37	20	42679966	42679966	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0V6-01A-11D-A122-09	TCGA-BS-A0V6-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfcbd004-49f9-4608-87bd-94c76fb8bb41	3bb254a7-a995-4bd3-b178-22491beafaf0	NM_001098797.1	+1	validated	p.S144	0.998	30	0%	28	17.9%	-	-	-	-	-	NULL
PFDN4	5203	genome.wustl.edu	37	20	52835581	52835581	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0V6-01A-11D-A122-09	TCGA-BS-A0V6-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfcbd004-49f9-4608-87bd-94c76fb8bb41	3bb254a7-a995-4bd3-b178-22491beafaf0	NM_002623.3	+1	reviewed	p.D99	0.864	238	0%	147	21.8%	-	-	-	-	-	HMMPfam_Prefoldin_2,superfamily_Prefoldin
BMP7	655	genome.wustl.edu	37	20	55840761	55840761	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0V6-01A-11D-A122-09	TCGA-BS-A0V6-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfcbd004-49f9-4608-87bd-94c76fb8bb41	3bb254a7-a995-4bd3-b178-22491beafaf0	NM_001719.2	-1	reviewed	p.V140M	0.999	23	0%	36	25%	-	-	possibly_damaging(0.944)	deleterious(0.02)	deleterious(0.772)	HMMPfam_TGFb_propeptide
LOC729057	729057	genome.wustl.edu	37	22	16123783	16123783	+	RNA	SNP	C	C	T	rs8141038		TCGA-BS-A0V6-01A-11D-A122-09	TCGA-BS-A0V6-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfcbd004-49f9-4608-87bd-94c76fb8bb41	3bb254a7-a995-4bd3-b178-22491beafaf0	XR_042044.2	+1	model	NULL	0.198	49	0%	55	10.9%	-	-	-	-	-	-
TCEAL6	158931	genome.wustl.edu	37	X	101396021	101396021	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0V6-01A-11D-A122-09	TCGA-BS-A0V6-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfcbd004-49f9-4608-87bd-94c76fb8bb41	3bb254a7-a995-4bd3-b178-22491beafaf0	NM_001006938.2	-1	validated	p.R95W	0.001	334	0.3%	370	24.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TFA
MAP7D3	79649	genome.wustl.edu	37	X	135301809	135301809	+	Silent	SNP	G	G	C	novel		TCGA-BS-A0V6-01A-11D-A122-09	TCGA-BS-A0V6-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfcbd004-49f9-4608-87bd-94c76fb8bb41	3bb254a7-a995-4bd3-b178-22491beafaf0	NM_024597.3	-1	reviewed	p.T836	0.000	602	0%	562	27.8%	-	-	-	-	-	NULL
GPR112	139378	genome.wustl.edu	37	X	135426787	135426787	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0V6-01A-11D-A122-09	TCGA-BS-A0V6-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfcbd004-49f9-4608-87bd-94c76fb8bb41	3bb254a7-a995-4bd3-b178-22491beafaf0	NM_153834.3	+1	reviewed	p.D308N	0.000	384	0%	288	26.7%	-	-	benign(0.005)	tolerated(0.24)	neutral(0.037)	NULL
BCAP31	10134	genome.wustl.edu	37	X	152966426	152966426	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0V6-01A-11D-A122-09	TCGA-BS-A0V6-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bfcbd004-49f9-4608-87bd-94c76fb8bb41	3bb254a7-a995-4bd3-b178-22491beafaf0	NM_001139457.1	-1	reviewed	p.A303E	0.000	93	0%	96	28.1%	-	-	benign(0.153)	tolerated(0.15)	neutral(0.255)	NULL
