Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	isArtifactMode	oxoGCut
PLEKHG5	57449	broad.mit.edu	37	1	6529217	6529217	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr1:6529217C>T	uc001ano.1	-	20	2403	c.2302G>A	c.(2302-2304)GAG>AAG	p.E768K	PLEKHG5_uc001ann.1_Missense_Mutation_p.E749K|PLEKHG5_uc001anq.1_Missense_Mutation_p.E789K|PLEKHG5_uc001anp.1_Missense_Mutation_p.E789K|TNFRSF25_uc001ana.2_5'Flank|TNFRSF25_uc001anb.2_5'Flank|TNFRSF25_uc001anc.2_5'Flank|TNFRSF25_uc001and.2_5'Flank|TNFRSF25_uc009vlz.2_5'Flank|TNFRSF25_uc001ane.2_5'Flank|TNFRSF25_uc001anf.2_5'Flank|TNFRSF25_uc001ang.2_5'Flank|TNFRSF25_uc001anh.2_5'Flank|TNFRSF25_uc001ani.1_5'Flank|PLEKHG5_uc001anj.1_Missense_Mutation_p.E273K|PLEKHG5_uc009vma.1_Missense_Mutation_p.E552K|PLEKHG5_uc010nzr.1_Missense_Mutation_p.E781K|PLEKHG5_uc001ank.1_Missense_Mutation_p.E712K|PLEKHG5_uc009vmb.1_Missense_Mutation_p.E712K|PLEKHG5_uc001anl.1_Missense_Mutation_p.E712K|PLEKHG5_uc001anm.1_Missense_Mutation_p.E712K|PLEKHG5_uc001anr.1_5'UTR	NM_001042663	NP_001036128	O94827	PKHG5_HUMAN	pleckstrin homology domain containing family G	768	Glu-rich.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|perinuclear region of cytoplasm	Rho guanyl-nucleotide exchange factor activity|signal transducer activity			liver(1)	1	Ovarian(185;0.02)|all_lung(157;0.154)	all_cancers(23;1.7e-35)|all_epithelial(116;2.78e-22)|all_lung(118;7.57e-07)|Lung NSC(185;4.26e-06)|Colorectal(325;4.47e-05)|all_hematologic(16;0.00014)|Breast(487;0.000688)|Renal(390;0.0007)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0448)		Epithelial(90;5.51e-35)|GBM - Glioblastoma multiforme(13;3.57e-27)|Colorectal(212;6.23e-08)|COAD - Colon adenocarcinoma(227;1.33e-05)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000894)|BRCA - Breast invasive adenocarcinoma(365;0.00107)|STAD - Stomach adenocarcinoma(132;0.00159)|READ - Rectum adenocarcinoma(331;0.0419)		tcttcctcctcctgctcatcc	0.433000													17	87					0	0	0	0
RPS6KA1	6195	broad.mit.edu	37	1	26888033	26888033	+	Missense_Mutation	SNP	A	T	T			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr1:26888033A>T	uc001bmr.1	+	17	1632	c.1469A>T	c.(1468-1470)GAG>GTG	p.E490V	RPS6KA1_uc010ofe.1_Missense_Mutation_p.E398V|RPS6KA1_uc010off.1_Missense_Mutation_p.E474V|RPS6KA1_uc001bms.1_Missense_Mutation_p.E499V|RPS6KA1_uc009vsl.1_Missense_Mutation_p.E333V	NM_002953	NP_002944	Q15418	KS6A1_HUMAN	ribosomal protein S6 kinase, 90kDa, polypeptide	490	Protein kinase 2.				axon guidance|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|stress-activated MAPK cascade|synaptic transmission|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|caspase inhibitor activity|magnesium ion binding|protein binding|protein serine/threonine kinase activity			lung(1)	1		all_cancers(24;2.49e-24)|Colorectal(325;3.46e-05)|all_lung(284;4.76e-05)|Lung NSC(340;5.83e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.00571)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Epithelial(14;1.12e-50)|OV - Ovarian serous cystadenocarcinoma(117;2.89e-29)|Colorectal(126;1.4e-08)|COAD - Colon adenocarcinoma(152;9.31e-07)|BRCA - Breast invasive adenocarcinoma(304;0.000537)|KIRC - Kidney renal clear cell carcinoma(1967;0.000759)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.0361)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.161)|LUSC - Lung squamous cell carcinoma(448;0.234)		CTGGTGACAGAGCTGATGCGG	0.582000													16	132					0	0	0	0
EYA3	2140	broad.mit.edu	37	1	28339624	28339624	+	Missense_Mutation	SNP	G	C	C			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr1:28339624G>C	uc001bpi.1	-	9	932	c.767C>G	c.(766-768)TCT>TGT	p.S256C	EYA3_uc010ofs.1_Missense_Mutation_p.S203C|EYA3_uc010oft.1_Missense_Mutation_p.S210C|EYA3_uc001bpj.2_Missense_Mutation_p.S210C|EYA3_uc001bpk.1_RNA|EYA3_uc010ofu.1_RNA	NM_001990	NP_001981	Q99504	EYA3_HUMAN	eyes absent 3	256					anatomical structure morphogenesis|double-strand break repair|histone dephosphorylation|multicellular organismal development|positive regulation of DNA repair|regulation of transcription, DNA-dependent|response to ionizing radiation|transcription, DNA-dependent|visual perception	cytoplasm	metal ion binding|protein binding|protein tyrosine phosphatase activity			ovary(2)|skin(1)	3		Colorectal(325;3.46e-05)|all_lung(284;0.000414)|Lung NSC(340;0.000432)|Renal(390;0.00121)|Breast(348;0.00345)|Ovarian(437;0.00503)|all_neural(195;0.0208)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0484)|OV - Ovarian serous cystadenocarcinoma(117;1.25e-24)|Colorectal(126;2.96e-08)|COAD - Colon adenocarcinoma(152;2.8e-06)|STAD - Stomach adenocarcinoma(196;0.00364)|KIRC - Kidney renal clear cell carcinoma(1967;0.00378)|BRCA - Breast invasive adenocarcinoma(304;0.00718)|READ - Rectum adenocarcinoma(331;0.0642)		GTGCTTACCAGAGGAAAGTCT	0.468000													4	110					0	0	0	0
MACF1	23499	broad.mit.edu	37	1	39797053	39797053	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr1:39797053G>A	uc010oiu.1	+	1	244	c.113G>A	c.(112-114)GGC>GAC	p.G38D	MACF1_uc010ois.1_Intron|MACF1_uc001cda.1_Intron|MACF1_uc001cdc.1_Intron|MACF1_uc001cdb.1_Intron	NM_033044	NP_149033	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	1603	Plectin 1.				cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			TTGGAGGAGGGCATAGCCAGA	0.537000													4	76					0	0	0	0
TTC22	55001	broad.mit.edu	37	1	55266812	55266812	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr1:55266812C>T	uc009vzt.1	-	1	130	c.25G>A	c.(25-27)GAC>AAC	p.D9N	TTC22_uc001cxz.3_Missense_Mutation_p.D9N	NM_001114108	NP_001107580	Q5TAA0	TTC22_HUMAN	tetratricopeptide repeat domain 22 isoform 1	9							binding				0						TCTAGATCGTCGGCCACAGCC	0.667000													3	26					0	0	0	0
LEPR	3953	broad.mit.edu	37	1	66036308	66036308	+	Nonsense_Mutation	SNP	G	T	T			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr1:66036308G>T	uc001dci.2	+	4	395	c.193G>T	c.(193-195)GAG>TAG	p.E65*	LEPR_uc001dcg.2_Nonsense_Mutation_p.E65*|LEPR_uc001dch.2_Nonsense_Mutation_p.E65*|LEPR_uc009waq.2_Nonsense_Mutation_p.E65*|LEPR_uc001dcj.2_Nonsense_Mutation_p.E65*|LEPR_uc001dck.2_Nonsense_Mutation_p.E65*	NM_002303	NP_002294	P48357	LEPR_HUMAN	leptin receptor isoform 1	65	Extracellular (Potential).				energy reserve metabolic process|multicellular organismal development	extracellular region|integral to membrane|plasma membrane	cytokine receptor activity			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(397;0.00722)|KIRC - Kidney renal clear cell carcinoma(1967;0.094)		TGGACATTATGAGACAGCTGT	0.378000													4	103					0.00909568	0.00922379	1	0
SFRS11	9295	broad.mit.edu	37	1	70716156	70716156	+	Silent	SNP	A	G	G			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr1:70716156A>G	uc001des.2	+	12	1351	c.1227A>G	c.(1225-1227)GAA>GAG	p.E409E	SFRS11_uc001det.2_Silent_p.E409E|SFRS11_uc001deu.2_Silent_p.E416E|SFRS11_uc001dev.2_Silent_p.E219E|SFRS11_uc001dew.2_Silent_p.E349E	NM_004768	NP_004759	Q05519	SRS11_HUMAN	splicing factor, arginine/serine-rich 11	409					mRNA 3'-end processing|mRNA export from nucleus|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	nucleoplasm	nucleotide binding|protein binding|RNA binding				0						aggaCCGGGAAAGAAAATCAG	0.154000													5	60					0	0	0	0
SLC44A5	204962	broad.mit.edu	37	1	75683637	75683637	+	Missense_Mutation	SNP	G	T	T			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr1:75683637G>T	uc001dgu.2	-	18	1682	c.1538C>A	c.(1537-1539)ACA>AAA	p.T513K	SLC44A5_uc001dgt.2_Missense_Mutation_p.T513K|SLC44A5_uc001dgs.2_Missense_Mutation_p.T471K|SLC44A5_uc001dgr.2_Missense_Mutation_p.T471K|SLC44A5_uc010oqz.1_Missense_Mutation_p.T552K|SLC44A5_uc010ora.1_Missense_Mutation_p.T507K|SLC44A5_uc010orb.1_Missense_Mutation_p.T383K	NM_152697	NP_689910	Q8NCS7	CTL5_HUMAN	solute carrier family 44, member 5 isoform A	513	Extracellular (Potential).					integral to membrane|plasma membrane	choline transmembrane transporter activity			ovary(2)|skin(2)	4						TAGGGATCCTGTGTGATATCT	0.284000													4	45					0.00909568	0.00922379	1	0
LPAR3	23566	broad.mit.edu	37	1	85331150	85331150	+	Silent	SNP	G	A	A			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr1:85331150G>A	uc001dkl.2	-	1	693	c.654C>T	c.(652-654)AAC>AAT	p.N218N	LPAR3_uc009wcj.1_Silent_p.N218N	NM_012152	NP_036284	Q9UBY5	LPAR3_HUMAN	lysophosphatidic acid receptor 3	218	Cytoplasmic (Potential).				G-protein signaling, coupled to cyclic nucleotide second messenger|synaptic transmission	integral to plasma membrane|intracellular membrane-bounded organelle				lung(3)|ovary(2)	5						GAGACAAGACGTTGGTTTTCC	0.512000													5	37					0	0	0	0
GBP4	115361	broad.mit.edu	37	1	89657032	89657032	+	Silent	SNP	G	A	A			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr1:89657032G>A	uc001dnb.2	-	6	944	c.828C>T	c.(826-828)TTC>TTT	p.F276F		NM_052941	NP_443173	Q96PP9	GBP4_HUMAN	guanylate binding protein 4	276						cytoplasm	GTP binding|GTPase activity				0				all cancers(265;0.00723)|Epithelial(280;0.0291)		ATTGCATAAGGAAATGCCTTT	0.413000													9	87					0	0	0	0
LRRC39	127495	broad.mit.edu	37	1	100620742	100620742	+	Missense_Mutation	SNP	G	A	A	rs149823600		TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr1:100620742G>A	uc001dsw.1	-	8	876	c.677C>T	c.(676-678)ACG>ATG	p.T226M	LRRC39_uc001dsx.1_Missense_Mutation_p.T226M|LRRC39_uc001dsy.1_Missense_Mutation_p.T226M|LRRC39_uc001dsz.1_Missense_Mutation_p.T226M	NM_144620	NP_653221	Q96DD0	LRC39_HUMAN	leucine rich repeat containing 39	226	LRR 7.									ovary(2)|skin(1)	3		all_epithelial(167;0.000542)|all_lung(203;0.0154)|Lung NSC(277;0.0155)		Epithelial(280;0.0826)|all cancers(265;0.135)|COAD - Colon adenocarcinoma(174;0.148)|Lung(183;0.195)		CAGCCATAACGTATGTAGATT	0.279000													7	29					0	0	0	0
KCNA3	3738	broad.mit.edu	37	1	111216896	111216896	+	Missense_Mutation	SNP	A	T	T			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr1:111216896A>T	uc001dzv.1	-	1	760	c.536T>A	c.(535-537)ATT>AAT	p.I179N		NM_002232	NP_002223	P22001	KCNA3_HUMAN	potassium voltage-gated channel, shaker-related	179						voltage-gated potassium channel complex	delayed rectifier potassium channel activity			ovary(4)|pancreas(1)	5		all_cancers(81;3.92e-06)|all_epithelial(167;1.28e-05)|all_lung(203;0.000199)|Lung NSC(277;0.000398)		Lung(183;0.0235)|Colorectal(144;0.0306)|all cancers(265;0.0752)|Epithelial(280;0.0821)|COAD - Colon adenocarcinoma(174;0.132)|LUSC - Lung squamous cell carcinoma(189;0.133)		CTCGGAGAAAATGTCGATGGG	0.647000													23	98					0	0	0	0
FAM46C	54855	broad.mit.edu	37	1	118166445	118166445	+	Missense_Mutation	SNP	G	T	T			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr1:118166445G>T	uc001ehe.2	+	2	1154	c.955G>T	c.(955-957)GTG>TTG	p.V319L		NM_017709	NP_060179	Q5VWP2	FA46C_HUMAN	hypothetical protein LOC54855	319											0	Lung SC(450;0.225)	all_cancers(81;0.000101)|all_lung(203;3.4e-06)|all_epithelial(167;4.98e-06)|Lung NSC(69;2.33e-05)		Lung(183;0.0576)|LUSC - Lung squamous cell carcinoma(189;0.192)|Colorectal(144;0.247)		CGAGAGCACCGTGTGTCTCAT	0.537000										Multiple Myeloma(3;1.13e-06)			12	43					1.61879e-10	1.85005e-10	1	0
YY1AP1	55249	broad.mit.edu	37	1	155640205	155640205	+	Missense_Mutation	SNP	T	C	C			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr1:155640205T>C	uc001fln.2	-	8	856	c.832A>G	c.(832-834)AGC>GGC	p.S278G	YY1AP1_uc001flg.2_5'UTR|YY1AP1_uc010pgg.1_Missense_Mutation_p.S117G|YY1AP1_uc010pgh.1_Missense_Mutation_p.S201G|YY1AP1_uc010pgi.1_Missense_Mutation_p.S350G|YY1AP1_uc001flh.2_Missense_Mutation_p.S350G|YY1AP1_uc009wqt.2_Missense_Mutation_p.S201G|YY1AP1_uc001flk.2_Missense_Mutation_p.S201G|YY1AP1_uc001fll.2_Missense_Mutation_p.S212G|YY1AP1_uc009wqv.2_Intron|YY1AP1_uc001flm.2_Missense_Mutation_p.S201G|YY1AP1_uc001fli.2_Missense_Mutation_p.S212G|YY1AP1_uc009wqu.2_Missense_Mutation_p.S45G|YY1AP1_uc001flj.2_Missense_Mutation_p.S212G|YY1AP1_uc009wqw.2_Missense_Mutation_p.S201G|YY1AP1_uc001flo.2_Missense_Mutation_p.S146G|YY1AP1_uc001flp.2_Missense_Mutation_p.S212G|YY1AP1_uc010pgj.1_Missense_Mutation_p.S278G|YY1AP1_uc009wqx.2_Missense_Mutation_p.S350G|YY1AP1_uc010pgk.1_Intron	NM_139118	NP_620829	Q9H869	YYAP1_HUMAN	YY1-associated protein isoform 2	278					regulation of cell cycle|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	protein binding			ovary(2)|skin(1)	3	Hepatocellular(266;0.0997)|all_hematologic(923;0.145)					AAAACCTTGCTTGTGGCCAGG	0.428000													31	60					0	0	0	0
DHX9	1660	broad.mit.edu	37	1	182812436	182812436	+	Missense_Mutation	SNP	T	G	G			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr1:182812436T>G	uc001gpr.2	+	3	282	c.119T>G	c.(118-120)GTG>GGG	p.V40G	DHX9_uc001gps.2_5'UTR	NM_001357	NP_001348	Q08211	DHX9_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 9	40	DRBM 1.|Interaction with CREBBP.				CRD-mediated mRNA stabilization|nuclear mRNA splicing, via spliceosome	centrosome|CRD-mediated mRNA stability complex|nucleolus|nucleoplasm|ribonucleoprotein complex	ATP binding|ATP-dependent DNA helicase activity|ATP-dependent RNA helicase activity|DNA binding|double-stranded RNA binding|protein binding			ovary(2)	2						AAGGTTCAGGTGGAAGGTTAT	0.333000													6	46					0	0	0	0
KIF14	9928	broad.mit.edu	37	1	200550376	200550376	+	Silent	SNP	T	C	C			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr1:200550376T>C	uc010ppk.1	-	20	3727	c.3288A>G	c.(3286-3288)GAA>GAG	p.E1096E	KIF14_uc010ppj.1_Silent_p.E605E	NM_014875	NP_055690	Q15058	KIF14_HUMAN	kinesin family member 14	1096	Required for CIT-binding.				microtubule-based movement	cytoplasm|microtubule|nucleus|spindle	ATP binding|microtubule motor activity|protein binding			breast(3)|ovary(2)|skin(2)	7						TAGCATTGGCTTCCTGAATCA	0.328000													18	75					0	0	0	0
AGT	183	broad.mit.edu	37	1	230839947	230839947	+	Missense_Mutation	SNP	C	G	G	rs61751067		TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr1:230839947C>G	uc001hty.3	-	4	1769	c.1261G>C	c.(1261-1263)GTG>CTG	p.V421L	AGT_uc009xfe.2_Intron|AGT_uc009xff.2_Missense_Mutation_p.V393L	NM_000029	NP_000020	P01019	ANGT_HUMAN	angiotensinogen preproprotein	421					activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|blood vessel remodeling|cell-cell signaling|cellular lipid metabolic process|G-protein signaling, coupled to cGMP nucleotide second messenger|kidney development|low-density lipoprotein particle remodeling|negative regulation of nerve growth factor receptor signaling pathway|nitric oxide mediated signal transduction|positive regulation of activation of JAK2 kinase activity|positive regulation of apoptosis|positive regulation of branching involved in ureteric bud morphogenesis|positive regulation of cardiac muscle hypertrophy|positive regulation of cholesterol esterification|positive regulation of cytokine production|positive regulation of endothelial cell migration|positive regulation of epidermal growth factor receptor signaling pathway|positive regulation of fibroblast proliferation|positive regulation of inflammatory response|positive regulation of NAD(P)H oxidase activity|positive regulation of NF-kappaB transcription factor activity|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of protein tyrosine kinase activity|positive regulation of reactive oxygen species metabolic process|positive regulation of transcription, DNA-dependent|regulation of proteolysis|regulation of renal output by angiotensin|regulation of renal sodium excretion|regulation of vasoconstriction|renin-angiotensin regulation of aldosterone production|response to muscle activity involved in regulation of muscle adaptation	extracellular space|soluble fraction	acetyltransferase activator activity|growth factor activity|hormone activity|serine-type endopeptidase inhibitor activity|type 1 angiotensin receptor binding|type 2 angiotensin receptor binding				0	Breast(184;0.0735)|Ovarian(103;0.183)	all_cancers(173;4.64e-23)|all_epithelial(177;3.61e-18)|Breast(1374;0.00093)|all_neural(198;0.0604)|Prostate(94;0.167)		GBM - Glioblastoma multiforme(131;4.4e-06)|Colorectal(1306;5.46e-06)|COAD - Colon adenocarcinoma(196;0.000256)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)	Aliskiren(DB01258)|Atorvastatin(DB01076)|Cilazapril(DB01340)|Irbesartan(DB01029)|Lisinopril(DB00722)|Ouabain(DB01092)|Simvastatin(DB00641)	ACCTCCCCCACCCTGATGCGG	0.582000													13	39					0	0	0	0
RYR2	6262	broad.mit.edu	37	1	237777871	237777871	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr1:237777871G>A	uc001hyl.1	+	37	5563	c.5443G>A	c.(5443-5445)GAA>AAA	p.E1815K		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	1815	Cytoplasmic (By similarity).|4 X approximate repeats.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			AGGGACTACTGAATTCCTCTT	0.483000													26	202					0	0	0	0
RYR2	6262	broad.mit.edu	37	1	237947096	237947096	+	Silent	SNP	G	A	A			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr1:237947096G>A	uc001hyl.1	+	90	12204	c.12084G>A	c.(12082-12084)TCG>TCA	p.S4028S	RYR2_uc010pya.1_Silent_p.S443S	NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	4028	EF-hand.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			ATTTGACGTCGTCTGATACTT	0.423000													4	19					0	0	0	0
CHRM3	1131	broad.mit.edu	37	1	240072485	240072485	+	Silent	SNP	G	A	A			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr1:240072485G>A	uc001hyp.2	+	5	2513	c.1734G>A	c.(1732-1734)TCG>TCA	p.S578S		NM_000740	NP_000731	P20309	ACM3_HUMAN	cholinergic receptor, muscarinic 3	578	Cytoplasmic (By similarity).				cell proliferation|energy reserve metabolic process|nervous system development|protein modification process|regulation of insulin secretion	basolateral plasma membrane|cell junction|integral to plasma membrane|postsynaptic membrane	muscarinic acetylcholine receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(1)	5	Ovarian(103;0.127)	all_cancers(173;0.00567)|all_neural(198;0.203)	OV - Ovarian serous cystadenocarcinoma(106;0.00989)		Anisotropine Methylbromide(DB00517)|Atropine(DB00572)|Benzquinamide(DB00767)|Cevimeline(DB00185)|Cryptenamine(DB00785)|Cyclizine(DB01176)|Darifenacin(DB00496)|Diphemanil Methylsulfate(DB00729)|Diphenidol(DB01231)|Homatropine Methylbromide(DB00725)|Methotrimeprazine(DB01403)|Metixene(DB00340)|Olanzapine(DB00334)|Oxybutynin(DB01062)|Oxyphencyclimine(DB00383)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Solifenacin(DB01591)|Thiethylperazine(DB00372)|Tiotropium(DB01409)|Tolterodine(DB01036)|Tridihexethyl(DB00505)	AGAGACAGTCGGTCATTTTTC	0.488000													9	49					0	0	0	0
OR14A16	284532	broad.mit.edu	37	1	247978352	247978352	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr1:247978352G>A	uc001idm.1	-	1	680	c.680C>T	c.(679-681)CCT>CTT	p.P227L		NM_001001966	NP_001001966	Q8NHC5	O14AG_HUMAN	olfactory receptor, family 14, subfamily A,	227	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TTCTGTGGAAGGGATCTTCTT	0.403000													10	54					0	0	0	0
MLLT10	8028	broad.mit.edu	37	10	22022748	22022748	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr10:22022748C>T	uc001iqs.2	+	21	2944	c.2596C>T	c.(2596-2598)CCA>TCA	p.P866S	MLLT10_uc001iqt.2_Missense_Mutation_p.P850S|MLLT10_uc001iqv.2_RNA|MLLT10_uc001iqy.2_Missense_Mutation_p.P850S|MLLT10_uc001ira.2_Missense_Mutation_p.P307S|MLLT10_uc001irb.2_RNA	NM_004641	NP_004632	P55197	AF10_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	866					positive regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(1)|skin(1)	2						TCTTTCTACCCCACCTCCTGC	0.527000			T	MLL|PICALM|CDK6	AL								11	35					0	0	0	0
CSGALNACT2	55454	broad.mit.edu	37	10	43678751	43678751	+	Nonsense_Mutation	SNP	C	T	T			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr10:43678751C>T	uc001jan.2	+	8	1725	c.1390C>T	c.(1390-1392)CGA>TGA	p.R464*		NM_018590	NP_061060	Q8N6G5	CGAT2_HUMAN	chondroitin sulfate	464	Lumenal (Potential).				chondroitin sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process|dermatan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process	Golgi cisterna membrane|integral to Golgi membrane	glucuronylgalactosylproteoglycan 4-beta-N-acetylgalactosaminyltransferase activity|metal ion binding			ovary(1)	1						TCATCTTTATCGAAAATACTT	0.438000													6	132					0	0	0	0
PRKG1	5592	broad.mit.edu	37	10	54053631	54053631	+	Missense_Mutation	SNP	G	C	C			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr10:54053631G>C	uc001jjm.2	+	18	2181	c.1987G>C	c.(1987-1989)GAC>CAC	p.D663H	PRKG1_uc001jjo.2_Missense_Mutation_p.D678H|PRKG1_uc009xow.1_Missense_Mutation_p.D381H|uc001jjq.1_Intron	NM_001098512	NP_001091982	Q13976	KGP1_HUMAN	protein kinase, cGMP-dependent, type I isoform	663	AGC-kinase C-terminal.				actin cytoskeleton organization|platelet activation|signal transduction	cytosol	ATP binding|cGMP binding|cGMP-dependent protein kinase activity			lung(2)|stomach(1)|ovary(1)|central_nervous_system(1)|skin(1)	6		all_cancers(4;2.13e-08)|all_epithelial(4;2.44e-08)|all_lung(4;0.000173)		all cancers(4;1.18e-05)|GBM - Glioblastoma multiforme(4;0.000359)|Epithelial(53;0.00532)|Lung(62;0.0606)		ACCACCTGATGACAACTCAGG	0.433000													8	60					0	0	0	0
Unknown	0	broad.mit.edu	37	10	79540777	79540777	+	RNA	SNP	T	C	C			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr10:79540777T>C	uc001jyx.2	+	1		c.13T>C			uc001jyz.2_5'Flank|uc001jza.2_5'Flank|uc001jzb.2_5'Flank|uc001jze.1_5'Flank|uc010qll.1_5'Flank|uc001jzf.1_5'Flank|uc001jzg.2_5'Flank|uc010qlm.1_5'Flank|uc001jzh.2_5'Flank					DQ581179																		TAATGCACCATGGTGATCTGA	0.567000													14	27					0	0	0	0
LRIT2	340745	broad.mit.edu	37	10	85984686	85984686	+	Missense_Mutation	SNP	G	T	T			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr10:85984686G>T	uc001kcy.2	-	2	303	c.295C>A	c.(295-297)CTG>ATG	p.L99M	LRIT2_uc010qmc.1_Missense_Mutation_p.L99M	NM_001017924	NP_001017924	A6NDA9	LRIT2_HUMAN	leucine rich repeat containing 22 precursor	99	LRR 1.					integral to membrane				ovary(2)	2						AGGTGTTCCAGGGCTCCTAGG	0.522000													10	136					2.17888e-05	2.32989e-05	1	0
HELLS	3070	broad.mit.edu	37	10	96333910	96333910	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr10:96333910G>A	uc001kjt.2	+	8	776	c.671G>A	c.(670-672)CGA>CAA	p.R224Q	HELLS_uc001kjs.2_Missense_Mutation_p.R208Q|HELLS_uc009xul.2_Missense_Mutation_p.R224Q|HELLS_uc009xum.2_Missense_Mutation_p.R224Q|HELLS_uc009xun.2_Missense_Mutation_p.R100Q|HELLS_uc009xuo.2_Missense_Mutation_p.R224Q|HELLS_uc001kju.2_5'UTR|HELLS_uc009xup.2_RNA|HELLS_uc009xuq.2_Missense_Mutation_p.R86Q|HELLS_uc009xur.2_RNA	NM_018063	NP_060533	Q9NRZ9	HELLS_HUMAN	helicase, lymphoid-specific	224					cell division|centromeric heterochromatin formation|lymphocyte proliferation|maintenance of DNA methylation|methylation-dependent chromatin silencing|mitosis|transcription, DNA-dependent	centromeric heterochromatin|nucleus	ATP binding|DNA binding|helicase activity			ovary(1)|kidney(1)	2		Colorectal(252;0.0429)		all cancers(201;2.13e-05)		GGAGTGATGCGATGGTACCAA	0.393000													5	92					0	0	0	0
CYP2C8	1558	broad.mit.edu	37	10	96827015	96827015	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr10:96827015C>T	uc001kkb.2	-	3	526	c.431G>A	c.(430-432)CGT>CAT	p.R144H	CYP2C8_uc001kkc.2_RNA|CYP2C8_uc010qoa.1_Missense_Mutation_p.R74H|CYP2C8_uc010qob.1_Missense_Mutation_p.R58H|CYP2C8_uc010qoc.1_Missense_Mutation_p.R42H|CYP2C8_uc010qod.1_Missense_Mutation_p.R58H	NM_000770	NP_000761	P10632	CP2C8_HUMAN	cytochrome P450, family 2, subfamily C,	144					exogenous drug catabolic process|organic acid metabolic process|oxidative demethylation|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|caffeine oxidase activity|electron carrier activity|heme binding|oxygen binding				0		Colorectal(252;0.0397)		all cancers(201;6.21e-05)	Aminophenazone(DB01424)|Amiodarone(DB01118)|Amodiaquine(DB00613)|Benzphetamine(DB00865)|Carbamazepine(DB00564)|Cerivastatin(DB00439)|Diclofenac(DB00586)|Fluvastatin(DB01095)|Fosphenytoin(DB01320)|Gemfibrozil(DB01241)|Ketoconazole(DB01026)|Lapatinib(DB01259)|Lovastatin(DB00227)|Midazolam(DB00683)|Montelukast(DB00471)|Nicardipine(DB00622)|Paclitaxel(DB01229)|Phenytoin(DB00252)|Pioglitazone(DB01132)|Repaglinide(DB00912)|Rifampin(DB01045)|Rosiglitazone(DB00412)|Simvastatin(DB00641)|Sitagliptin(DB01261)|Tolbutamide(DB01124)|Torasemide(DB00214)|Tretinoin(DB00755)|Trimethoprim(DB00440)|Warfarin(DB00682)|Zafirlukast(DB00549)|Zopiclone(DB01198)	CTCTTGAACACGGTCCTCAAT	0.498000													41	100					0	0	0	0
CCDC147	159686	broad.mit.edu	37	10	106160509	106160509	+	Missense_Mutation	SNP	G	C	C			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr10:106160509G>C	uc001kyh.2	+	13	2021	c.1887G>C	c.(1885-1887)GAG>GAC	p.E629D		NM_001008723	NP_001008723	Q5T655	CC147_HUMAN	coiled-coil domain containing 147	629										ovary(2)|central_nervous_system(2)|skin(1)	5		Colorectal(252;0.103)|Breast(234;0.122)		Epithelial(162;7.55e-10)|all cancers(201;3.37e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0189)		TGCTCTATGAGAAGATCAAGA	0.488000													11	60					0	0	0	0
MKI67	4288	broad.mit.edu	37	10	129905202	129905202	+	Missense_Mutation	SNP	C	G	G			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr10:129905202C>G	uc001lke.2	-	13	5097	c.4902G>C	c.(4900-4902)AAG>AAC	p.K1634N	MKI67_uc001lkf.2_Missense_Mutation_p.K1274N|MKI67_uc009yav.1_Missense_Mutation_p.K1209N|MKI67_uc009yaw.1_Missense_Mutation_p.K784N	NM_002417	NP_002408	P46013	KI67_HUMAN	antigen identified by monoclonal antibody Ki-67	1634	6.|16 X 122 AA approximate repeats.				cell proliferation	nucleolus	ATP binding|protein C-terminus binding			ovary(4)|central_nervous_system(2)|skin(1)	7		all_epithelial(44;2.12e-05)|all_lung(145;0.00679)|Lung NSC(174;0.00998)|all_neural(114;0.0936)|Colorectal(57;0.14)|Breast(234;0.166)|Melanoma(40;0.203)				CCAGGGATGTCTTGAGCCGTC	0.502000													8	177					0	0	0	0
EBF3	253738	broad.mit.edu	37	10	131640443	131640443	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr10:131640443C>T	uc001lki.1	-	13	1341	c.1282G>A	c.(1282-1284)GTC>ATC	p.V428I		NM_001005463	NP_001005463	Q9H4W6	COE3_HUMAN	early B-cell factor 3	437					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|metal ion binding|protein binding			central_nervous_system(1)|pancreas(1)	2		all_cancers(35;1.8e-08)|all_epithelial(44;8.26e-08)|Lung NSC(174;0.0091)|all_lung(145;0.0123)|Breast(234;0.039)|all_neural(114;0.0722)|Colorectal(57;0.0764)		OV - Ovarian serous cystadenocarcinoma(35;0.00513)		AAGGAGTTGACGCCCATCATG	0.627000													15	102					0	0	0	0
MTG1	92170	broad.mit.edu	37	10	135233650	135233650	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr10:135233650C>T	uc001lnd.2	+	11	1090	c.986C>T	c.(985-987)CCG>CTG	p.P329L	MTG1_uc010qve.1_Missense_Mutation_p.P194L	NM_138384	NP_612393	Q9BT17	MTG1_HUMAN	GTP_binding protein precursor	329						mitochondrion	GTP binding|protein binding			skin(1)	1		all_cancers(35;1.14e-09)|all_epithelial(44;5.79e-08)|Lung NSC(174;0.00263)|all_lung(145;0.0039)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.172)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;1.21e-06)|all cancers(32;1.69e-06)|Epithelial(32;1.94e-06)		GGCCACCCCCCGGCTGAGACT	0.652000													17	61					0	0	0	0
MUC2	4583	broad.mit.edu	37	11	1103265	1103265	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr11:1103265C>T	uc001lsx.1	+	49	15128	c.15101C>T	c.(15100-15102)TCG>TTG	p.S5034L		NM_002457	NP_002448	Q02817	MUC2_HUMAN	mucin 2 precursor	5034						inner mucus layer|outer mucus layer	protein binding			lung(1)|breast(1)	2		all_cancers(49;1.08e-07)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.191)		BRCA - Breast invasive adenocarcinoma(625;0.000207)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)	Pranlukast(DB01411)	CAGCTCATCTCGTCCGTCTCC	0.592000													4	69					0	0	0	0
OR52A5	390054	broad.mit.edu	37	11	5153873	5153873	+	5'Flank	SNP	G	T	T			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr11:5153873G>T	uc010qyx.1	-							NM_001005160	NP_001005160	Q9H2C5	O52A5_HUMAN	olfactory receptor, family 52, subfamily A,						sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|lung(1)|central_nervous_system(1)	4		Medulloblastoma(188;0.0049)|all_neural(188;0.0442)|Breast(177;0.0675)		Epithelial(150;1.74e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)|LUSC - Lung squamous cell carcinoma(625;0.2)		ATGTCGGCATGATTTGTTCAT	0.363000													6	28					8.12818e-05	8.56433e-05	1	0
TAF10	6881	broad.mit.edu	37	11	6632981	6632981	+	Missense_Mutation	SNP	T	C	C			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr11:6632981T>C	uc001mej.1	-	2	326	c.301A>G	c.(301-303)AGC>GGC	p.S101G		NM_006284	NP_006275	Q12962	TAF10_HUMAN	TBP-related factor 10	101					histone deubiquitination|histone H3 acetylation|protein homooligomerization|regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|viral reproduction	PCAF complex|perinuclear region of cytoplasm|STAGA complex|transcription factor TFIID complex|transcription factor TFTC complex	estrogen receptor binding|RNA polymerase binding|transcription coactivator activity				0		Medulloblastoma(188;0.00263)|all_neural(188;0.026)|Breast(177;0.0481)		Epithelial(150;2.9e-09)|BRCA - Breast invasive adenocarcinoma(625;0.129)		TTGGCCGCGCTCGGCAGTACG	0.637000													3	15					0	0	0	0
OR10A3	26496	broad.mit.edu	37	11	7960482	7960482	+	Missense_Mutation	SNP	C	G	G			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr11:7960482C>G	uc010rbi.1	-	1	586	c.586G>C	c.(586-588)GAA>CAA	p.E196Q		NM_001003745	NP_001003745	P58181	O10A3_HUMAN	olfactory receptor, family 10, subfamily A,	196	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1				Epithelial(150;1.38e-07)|BRCA - Breast invasive adenocarcinoma(625;0.189)		GCATAGATTTCAAATAAGAAG	0.418000													9	75					0	0	0	0
HPS5	11234	broad.mit.edu	37	11	18318517	18318517	+	Missense_Mutation	SNP	G	C	C			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr11:18318517G>C	uc001mod.1	-	12	1616	c.1338C>G	c.(1336-1338)ATC>ATG	p.I446M	HPS5_uc001moe.1_Missense_Mutation_p.I332M|HPS5_uc001mof.1_Missense_Mutation_p.I332M	NM_181507	NP_852608	Q9UPZ3	HPS5_HUMAN	Hermansky-Pudlak syndrome 5 isoform a	446						cytosol				ovary(1)|pancreas(1)|skin(1)	3						CAGAGTCCAAGATGCTGAAAC	0.343000									Hermansky-Pudlak_syndrome				8	57					0	0	0	0
CCDC34	91057	broad.mit.edu	37	11	27362288	27362288	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr11:27362288G>A	uc001mrh.1	-	5	916	c.862C>T	c.(862-864)CGT>TGT	p.R288C		NM_030771	NP_110398	Q96HJ3	CCD34_HUMAN	coiled-coil domain containing 34 isoform 1	288											0						GCAGCTGGACGAGGTTTATGT	0.348000													6	88					0	0	0	0
NUP160	23279	broad.mit.edu	37	11	47823375	47823375	+	Missense_Mutation	SNP	C	A	A			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr11:47823375C>A	uc001ngm.2	-	23	2968	c.2883G>T	c.(2881-2883)CAG>CAT	p.Q961H	NUP160_uc009ylw.2_RNA	NM_015231	NP_056046	Q12769	NU160_HUMAN	nucleoporin 160kDa	961					carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA export from nucleus|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|Nup107-160 complex	nucleocytoplasmic transporter activity|protein binding			ovary(4)|lung(1)|central_nervous_system(1)|skin(1)	7						TGTCATAATACTGCAGCCTGG	0.423000													7	43					0.00198382	0.00203083	1	0
FAM111A	63901	broad.mit.edu	37	11	58919457	58919457	+	Missense_Mutation	SNP	A	T	T			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr11:58919457A>T	uc010rkp.1	+	5	543	c.316A>T	c.(316-318)ATG>TTG	p.M106L	FAM111A_uc010rkq.1_Missense_Mutation_p.M106L|FAM111A_uc010rkr.1_Missense_Mutation_p.M106L|FAM111A_uc001nno.2_Missense_Mutation_p.M106L|FAM111A_uc001nnp.2_Missense_Mutation_p.M106L|FAM111A_uc001nnq.2_Missense_Mutation_p.M106L	NM_001142521	NP_001135993	Q96PZ2	F111A_HUMAN	hypothetical protein LOC63901	106					proteolysis		serine-type endopeptidase activity			ovary(3)	3		all_epithelial(135;0.139)				TAGCTTATATATGGCTCTCAA	0.403000													6	41					0	0	0	0
BSCL2	26580	broad.mit.edu	37	11	62458142	62458142	+	Silent	SNP	C	T	T			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr11:62458142C>T	uc001nuo.1	-	10	1408	c.984G>A	c.(982-984)GAG>GAA	p.E328E	LRRN4CL_uc001nun.2_5'Flank|BSCL2_uc009yoc.1_Missense_Mutation_p.R281K|BSCL2_uc001nup.2_Silent_p.E328E|BSCL2_uc001nuq.1_Silent_p.E328E|BSCL2_uc001nur.3_Silent_p.E392E|BSCL2_uc009yod.2_Silent_p.E392E|BSCL2_uc001nut.3_Silent_p.E394E|HNRNPUL2_uc001nuu.1_RNA	NM_032667	NP_116056	Q96G97	BSCL2_HUMAN	seipin isoform 2	328	Cytoplasmic (Potential).				cell death	integral to endoplasmic reticulum membrane					0						GATCTGGTTTCTCCTCCTCGG	0.612000													5	119					0	0	0	0
PITPNM1	9600	broad.mit.edu	37	11	67262617	67262617	+	Silent	SNP	G	A	A			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr11:67262617G>A	uc001olx.2	-	16	2751	c.2562C>T	c.(2560-2562)GTC>GTT	p.V854V	PITPNM1_uc001olw.2_Silent_p.V136V|PITPNM1_uc001oly.2_Silent_p.V854V|PITPNM1_uc001olz.2_Silent_p.V853V	NM_004910	NP_004901	O00562	PITM1_HUMAN	phosphatidylinositol transfer protein,	854	DDHD.				brain development|lipid metabolic process|phototransduction|protein transport	cleavage furrow|endoplasmic reticulum membrane|Golgi cisterna membrane|lipid particle|membrane fraction|midbody	metal ion binding|phosphatidylinositol transporter activity			lung(2)|central_nervous_system(1)	3						GGGGCAGCGTGACGGTGGGAA	0.667000													4	56					0	0	0	0
PDE2A	5138	broad.mit.edu	37	11	72292985	72292985	+	Silent	SNP	G	A	A			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr11:72292985G>A	uc010rrc.1	-	22	2101	c.1858C>T	c.(1858-1860)CTG>TTG	p.L620L	PDE2A_uc001oso.2_Silent_p.L599L|PDE2A_uc010rra.1_Silent_p.L613L|PDE2A_uc001osn.2_Silent_p.L364L|PDE2A_uc010rrb.1_Silent_p.L611L|PDE2A_uc010rrd.1_Silent_p.L505L	NM_002599	NP_002590	O00408	PDE2A_HUMAN	phosphodiesterase 2A isoform 1	620					platelet activation|signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cGMP binding|cGMP-stimulated cyclic-nucleotide phosphodiesterase activity|metal ion binding			ovary(2)|breast(1)|skin(1)	4			BRCA - Breast invasive adenocarcinoma(5;3.55e-05)		Sildenafil(DB00203)|Sulindac(DB00605)	AGCATGCTCAGGATGGCCTGG	0.577000													8	89					0	0	0	0
DLG2	1740	broad.mit.edu	37	11	83585526	83585526	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr11:83585526G>A	uc001paj.2	-	11	1490	c.1187C>T	c.(1186-1188)TCC>TTC	p.S396F	DLG2_uc001pai.2_Missense_Mutation_p.S293F|DLG2_uc010rsy.1_Missense_Mutation_p.S363F|DLG2_uc010rsz.1_Missense_Mutation_p.S396F|DLG2_uc010rta.1_Missense_Mutation_p.S396F|DLG2_uc001pak.2_Missense_Mutation_p.S501F|DLG2_uc010rtb.1_Missense_Mutation_p.S363F|DLG2_uc001pal.1_Missense_Mutation_p.S396F|DLG2_uc001pam.1_Missense_Mutation_p.S435F	NM_001364	NP_001355	Q15700	DLG2_HUMAN	chapsyn-110 isoform 2	396						cell junction|postsynaptic density|postsynaptic membrane	guanylate kinase activity|protein binding|protein binding			ovary(3)|pancreas(2)|skin(1)	6		all_cancers(6;0.00791)|Acute lymphoblastic leukemia(157;4.44e-05)|all_hematologic(158;0.0036)				GCTATGTTGGGAATGACTGCA	0.318000													9	32					0	0	0	0
FAT3	120114	broad.mit.edu	37	11	92577460	92577460	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr11:92577460G>A	uc001pdj.3	+	18	10944	c.10927G>A	c.(10927-10929)GAG>AAG	p.E3643K	FAT3_uc001pdi.3_Missense_Mutation_p.E83K	NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	3643	Cadherin 33.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				GTTGGTGCATGAGATGCTGCA	0.562000										TCGA Ovarian(4;0.039)			9	102					0	0	0	0
SPATA19	219938	broad.mit.edu	37	11	133712445	133712445	+	Silent	SNP	G	A	A			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr11:133712445G>A	uc001qgv.1	-	5	423	c.372C>T	c.(370-372)ATC>ATT	p.I124I		NM_174927	NP_777587	Q7Z5L4	SPT19_HUMAN	spermatogenesis associated 19 precursor	124					cell differentiation|multicellular organismal development|spermatogenesis	mitochondrial outer membrane					0	all_hematologic(175;0.127)	all_cancers(12;5.59e-17)|all_epithelial(12;2.65e-12)|all_lung(97;0.00045)|Lung NSC(97;0.000861)|Breast(109;0.000873)|Medulloblastoma(222;0.0425)|Esophageal squamous(93;0.0844)|all_neural(223;0.117)		Epithelial(10;4.36e-10)|all cancers(11;7.1e-09)|BRCA - Breast invasive adenocarcinoma(10;8.45e-09)|OV - Ovarian serous cystadenocarcinoma(99;0.00286)|Lung(977;0.207)		GCACTTGGAAGATACGAGTGT	0.468000													5	61					0	0	0	0
WNK1	65125	broad.mit.edu	37	12	988982	988982	+	Silent	SNP	C	T	T			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr12:988982C>T	uc001qio.3	+	11	3124	c.2617C>T	c.(2617-2619)CTG>TTG	p.L873L	WNK1_uc001qip.3_Intron|WNK1_uc001qir.3_Intron	NM_018979	NP_061852	Q9H4A3	WNK1_HUMAN	WNK lysine deficient protein kinase 1	873					intracellular protein kinase cascade|ion transport|neuron development	cytoplasm	ATP binding|protein binding|protein kinase inhibitor activity|protein serine/threonine kinase activity			stomach(6)|breast(6)|ovary(5)|lung(4)|large_intestine(1)|central_nervous_system(1)	23	all_cancers(10;0.00611)|all_epithelial(11;0.00825)|all_lung(10;0.0331)|Ovarian(42;0.0512)|Lung NSC(10;0.0632)		Epithelial(1;1.74e-08)|all cancers(1;7.04e-08)|OV - Ovarian serous cystadenocarcinoma(31;0.000423)|BRCA - Breast invasive adenocarcinoma(9;0.0149)|Colorectal(1;0.0197)			TACTCAGCCTCTGCTCACGTT	0.532000													18	76					0	0	0	0
CD163	9332	broad.mit.edu	37	12	7653982	7653982	+	Silent	SNP	C	T	T			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr12:7653982C>T	uc001qsz.3	-	3	338	c.210G>A	c.(208-210)GAG>GAA	p.E70E	CD163_uc001qta.3_Silent_p.E70E|CD163_uc009zfw.2_Silent_p.E70E	NM_004244	NP_004235	Q86VB7	C163A_HUMAN	CD163 antigen isoform a	70	SRCR 1.|Extracellular (Potential).				acute-phase response	extracellular region|integral to plasma membrane	protein binding|scavenger receptor activity			ovary(6)|pancreas(1)|skin(1)	8						TTCCCCACTCCTCCTGGACTT	0.507000													10	60					0	0	0	0
A2ML1	144568	broad.mit.edu	37	12	9001323	9001323	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr12:9001323G>A	uc001quz.3	+	16	1939	c.1841G>A	c.(1840-1842)GGG>GAG	p.G614E	A2ML1_uc001qva.1_Missense_Mutation_p.G194E|A2ML1_uc010sgm.1_Missense_Mutation_p.G114E	NM_144670	NP_653271	A8K2U0	A2ML1_HUMAN	alpha-2-macroglobulin-like 1 precursor	458						extracellular space	endopeptidase inhibitor activity			ovary(2)|skin(1)	3						CAGGTCTATGGGATGTTTCCA	0.473000													19	112					0	0	0	0
GRIN2B	2904	broad.mit.edu	37	12	13716470	13716470	+	Silent	SNP	C	A	A			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr12:13716470C>A	uc001rbt.2	-	13	3881	c.3702G>T	c.(3700-3702)TCG>TCT	p.S1234S		NM_000834	NP_000825	Q13224	NMDE2_HUMAN	N-methyl-D-aspartate receptor subunit 2B	1234	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	glycine binding|N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			central_nervous_system(4)|ovary(3)|skin(3)|lung(2)	12					Felbamate(DB00949)|Haloperidol(DB00502)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	CCTGCCTGCCCGAGTTCTGAC	0.617000													5	55					3.59834e-05	3.82877e-05	1	0
MGP	4256	broad.mit.edu	37	12	15035947	15035947	+	Silent	SNP	G	A	A			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr12:15035947G>A	uc001rcn.1	-	3	232	c.129C>T	c.(127-129)TTC>TTT	p.F43F		NM_000900	NP_000891	P08493	MGP_HUMAN	matrix Gla protein precursor	43					cartilage condensation|cell differentiation|ossification|regulation of bone mineralization	proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent|structural constituent of bone			ovary(1)	1						GAGGGGATATGAAGGTATTTG	0.383000													7	60					0	0	0	0
LRRK2	120892	broad.mit.edu	37	12	40643742	40643742	+	Missense_Mutation	SNP	T	A	A			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr12:40643742T>A	uc001rmg.3	+	8	1074	c.953T>A	c.(952-954)CTC>CAC	p.L318H	LRRK2_uc001rmh.1_5'Flank	NM_198578	NP_940980	Q5S007	LRRK2_HUMAN	leucine-rich repeat kinase 2	318					activation of MAPKK activity|determination of adult lifespan|exploration behavior|intracellular distribution of mitochondria|negative regulation of branching morphogenesis of a nerve|negative regulation of dendritic spine morphogenesis|negative regulation of neuroblast proliferation|negative regulation of neuron maturation|neuromuscular junction development|neuron death|peptidyl-serine phosphorylation|positive regulation of autophagy|positive regulation of dopamine receptor signaling pathway|positive regulation of programmed cell death|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein phosphorylation|positive regulation of protein ubiquitination|protein autophosphorylation|regulation of kidney size|regulation of locomotion|regulation of membrane potential|response to oxidative stress|small GTPase mediated signal transduction|tangential migration from the subventricular zone to the olfactory bulb	external side of mitochondrial outer membrane	ATP binding|GTP binding|GTP-dependent protein kinase activity|GTPase activator activity|MAP kinase kinase activity|protein homodimerization activity|tubulin binding			ovary(12)|stomach(5)|upper_aerodigestive_tract(2)|lung(2)|large_intestine(1)|urinary_tract(1)|pancreas(1)	24	all_cancers(12;0.00108)|Breast(8;0.218)	Lung NSC(34;0.0942)|all_lung(34;0.11)				TGTTTGGCCCTCCTCAGTAAG	0.423000													3	28					0	0	0	0
PDZRN4	29951	broad.mit.edu	37	12	41967396	41967396	+	Missense_Mutation	SNP	C	T	T	rs144265671		TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr12:41967396C>T	uc010skn.1	+	10	2286	c.2218C>T	c.(2218-2220)CGC>TGC	p.R740C	PDZRN4_uc001rmq.3_Missense_Mutation_p.R681C|PDZRN4_uc009zjz.2_Missense_Mutation_p.R679C|PDZRN4_uc001rmr.2_Missense_Mutation_p.R566C	NM_013377	NP_037509	Q6ZMN7	PZRN4_HUMAN	PDZ domain containing RING finger 4 isoform 2	939							ubiquitin-protein ligase activity|zinc ion binding	p.R681C(1)		lung(3)|skin(3)|ovary(2)|large_intestine(1)|kidney(1)|pancreas(1)	11	all_cancers(12;0.000673)	Lung NSC(34;0.0205)|all_lung(34;0.0264)				GAAAATGGGGCGCTACTGGAG	0.542000													9	31					0	0	0	0
CACNB3	784	broad.mit.edu	37	12	49221458	49221458	+	Missense_Mutation	SNP	C	T	T	rs146819236		TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr12:49221458C>T	uc001rsl.1	+	13	1432	c.1231C>T	c.(1231-1233)CGC>TGC	p.R411C	CACNB3_uc010sly.1_Missense_Mutation_p.R398C|CACNB3_uc010slz.1_Missense_Mutation_p.R410C|CACNB3_uc001rsk.1_Missense_Mutation_p.R258C	NM_000725	NP_000716	P54284	CACB3_HUMAN	calcium channel, voltage-dependent, beta 3	411					axon guidance|membrane depolarization|synaptic transmission	cytosol|voltage-gated calcium channel complex	protein binding|voltage-gated calcium channel activity				0					Verapamil(DB00661)	CGAGAGCTCCCGCCAAGCCTG	0.647000													7	41					0	0	0	0
TROAP	10024	broad.mit.edu	37	12	49721061	49721061	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr12:49721061G>A	uc001rtx.3	+	8	1006	c.839G>A	c.(838-840)GGT>GAT	p.G280D	TROAP_uc009zlh.2_Missense_Mutation_p.G280D|TROAP_uc001rty.2_5'UTR	NM_005480	NP_005471	Q12815	TROAP_HUMAN	tastin isoform 1	280					cell adhesion	cytoplasm				ovary(1)	1						GCCTCTCTTGGTCTGGCCCAG	0.512000													12	61					0	0	0	0
KRT73	319101	broad.mit.edu	37	12	53012018	53012018	+	Silent	SNP	C	T	T	rs142655706	byFrequency	TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr12:53012018C>T	uc001sas.2	-	1	326	c.291G>A	c.(289-291)TCG>TCA	p.S97S		NM_175068	NP_778238	Q86Y46	K2C73_HUMAN	keratin 73	97	Head.|Gly-rich.					keratin filament	structural molecule activity			large_intestine(2)|ovary(2)|skin(2)	6				BRCA - Breast invasive adenocarcinoma(357;0.189)		GCGGGCACAACGACGGACACA	0.637000													12	111					0	0	0	0
PTPRB	5787	broad.mit.edu	37	12	70929923	70929923	+	Missense_Mutation	SNP	C	A	A			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr12:70929923C>A	uc001swb.3	-	27	5339	c.5309G>T	c.(5308-5310)AGA>ATA	p.R1770I	uc001svz.2_Intron|PTPRB_uc010sto.1_Missense_Mutation_p.R1680I|PTPRB_uc010stp.1_Missense_Mutation_p.R1680I|PTPRB_uc001swc.3_Missense_Mutation_p.R1988I|PTPRB_uc001swa.3_Missense_Mutation_p.R1900I	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	1770	Cytoplasmic (Potential).|Tyrosine-protein phosphatase.				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			AATGTATTCTCTTCTGAAGTT	0.428000													3	23					2.56e-06	2.79273e-06	1	0
TMEM132B	114795	broad.mit.edu	37	12	126128737	126128737	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr12:126128737G>A	uc001uhe.1	+	6	1546	c.1538G>A	c.(1537-1539)TGG>TAG	p.W513*	TMEM132B_uc001uhf.1_Nonsense_Mutation_p.W25*	NM_052907	NP_443139	Q14DG7	T132B_HUMAN	transmembrane protein 132B	513	Extracellular (Potential).					integral to membrane				skin(11)|ovary(5)|large_intestine(1)|pancreas(1)|breast(1)	19	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000423)|Epithelial(86;0.00394)|all cancers(50;0.0362)		GTCACTGTCTGGGCACCCAGG	0.537000													5	44					0	0	0	0
LOC284232	284232	broad.mit.edu	37	13	19411958	19411958	+	RNA	SNP	T	G	G	rs111991315	by1000genomes	TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr13:19411958T>G	uc010tcj.1	-	1		c.34152A>C				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						TCCATCGACTTGTTACCTTAT	0.269000													15	62					0	0	0	0
KIAA0564	23078	broad.mit.edu	37	13	42295521	42295521	+	Silent	SNP	T	A	A			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr13:42295521T>A	uc001uyj.2	-	25	3019	c.2949A>T	c.(2947-2949)ATA>ATT	p.I983I	KIAA0564_uc001uyk.2_Silent_p.I983I	NM_015058	NP_055873	A3KMH1	K0564_HUMAN	hypothetical protein LOC23078 isoform a	983						extracellular region	ATP binding|ATPase activity			ovary(3)|upper_aerodigestive_tract(1)|kidney(1)|skin(1)	6		Lung NSC(96;4.61e-06)|Prostate(109;0.0167)|Lung SC(185;0.0262)|Breast(139;0.0854)|Hepatocellular(98;0.114)		OV - Ovarian serous cystadenocarcinoma(117;0.000368)|GBM - Glioblastoma multiforme(144;0.0033)|BRCA - Breast invasive adenocarcinoma(63;0.0969)		AATGTTTGACTATGTTGACAA	0.408000													8	125					0	0	0	0
PCDH20	64881	broad.mit.edu	37	13	61985826	61985826	+	Silent	SNP	G	A	A			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr13:61985826G>A	uc001vid.3	-	2	2770	c.2406C>T	c.(2404-2406)GGC>GGT	p.G802G	PCDH20_uc010thj.1_Silent_p.G802G	NM_022843	NP_073754	Q8N6Y1	PCD20_HUMAN	protocadherin 20	775	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|breast(1)|central_nervous_system(1)	6		Breast(118;0.195)|Prostate(109;0.229)		GBM - Glioblastoma multiforme(99;0.000118)		AAGTAATGTTGCCAGTTTTAG	0.488000													13	58					0	0	0	0
OR11H6	122748	broad.mit.edu	37	14	20692714	20692714	+	Silent	SNP	A	T	T			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr14:20692714A>T	uc010tlc.1	+	1	846	c.846A>T	c.(844-846)TCA>TCT	p.S282S		NM_001004480	NP_001004480	Q8NGC7	O11H6_HUMAN	olfactory receptor, family 11, subfamily H,	282	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	all_cancers(95;0.00108)		Epithelial(56;1.75e-06)|all cancers(55;1.22e-05)	GBM - Glioblastoma multiforme(265;0.0143)		GCCCAACATCAGGGAACCCAG	0.448000													5	71					0	0	0	0
ASB2	51676	broad.mit.edu	37	14	94417436	94417436	+	Silent	SNP	C	T	T			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr14:94417436C>T	uc001ycc.1	-	4	1134	c.645G>A	c.(643-645)AAG>AAA	p.K215K	ASB2_uc001ycd.2_Silent_p.K263K|ASB2_uc001yce.1_Silent_p.K161K	NM_016150	NP_057234	Q96Q27	ASB2_HUMAN	ankyrin repeat and SOCS box-containing protein	215	ANK 5.				intracellular signal transduction					ovary(1)|pancreas(1)	2		all_cancers(154;0.13)		COAD - Colon adenocarcinoma(157;0.217)|Epithelial(152;0.232)		TGGATTCCACCTTGGCTCCTC	0.607000													8	98					0	0	0	0
OR4N3P	390539	broad.mit.edu	37	15	22414347	22414347	+	Missense_Mutation	SNP	G	T	T			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr15:22414347G>T	uc001yuf.2	+	1	646	c.646G>T	c.(646-648)GCT>TCT	p.A216S		NM_001080841	NP_001074310			RecName: Full=Olfactory receptor 4N2; AltName: Full=Olfactory receptor OR14-8; AltName: Full=Olfactory receptor OR14-13;												0						GGAAGTGAAAGCTTCCATGAA	0.358000													5	44					1.23904e-05	1.33151e-05	1	0
GOLGA8DP	100132979	broad.mit.edu	37	15	22709666	22709666	+	Missense_Mutation	SNP	T	G	G	rs4369632		TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr15:22709666T>G	uc010axw.2	-	10	1119	c.221A>C	c.(220-222)AAG>ACG	p.K74T	GOLGA8DP_uc010axx.2_Missense_Mutation_p.K74T|uc010tzw.1_5'Flank	NM_001012423	NP_001012423			golgi autoantigen, golgin subfamily a, 8E												0						CCTCTCCAGCTTCTCTACCCG	0.557000													10	273					0	0	0	0
HERC2	8924	broad.mit.edu	37	15	28386662	28386662	+	Silent	SNP	A	C	C			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr15:28386662A>C	uc001zbj.2	-	78	12037	c.11931T>G	c.(11929-11931)ACT>ACG	p.T3977T		NM_004667	NP_004658	O95714	HERC2_HUMAN	hect domain and RLD 2	3977	RCC1 13.				DNA repair|intracellular protein transport|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	guanyl-nucleotide exchange factor activity|heme binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(4)|skin(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	13		all_lung(180;1.3e-11)|Breast(32;0.000194)|Colorectal(260;0.227)		all cancers(64;3.93e-09)|Epithelial(43;9.99e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0271)|GBM - Glioblastoma multiforme(186;0.0497)|Lung(196;0.199)		CTTCACAGGGAGTGGGAACTT	0.537000													4	61					0	0	0	0
TRPM1	4308	broad.mit.edu	37	15	31323321	31323321	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr15:31323321C>T	uc001zfm.2	-	22	3054	c.2926G>A	c.(2926-2928)GTG>ATG	p.V976M	TRPM1_uc010azy.2_Missense_Mutation_p.V883M|TRPM1_uc001zfl.2_Intron	NM_002420	NP_002411	Q7Z4N2	TRPM1_HUMAN	transient receptor potential cation channel,	976	Helical; (Potential).				cellular response to light stimulus|visual perception	integral to plasma membrane	calcium channel activity|receptor activity			ovary(2)|pancreas(1)|skin(1)	4		all_lung(180;1.92e-11)		all cancers(64;3.52e-16)|Epithelial(43;1.65e-11)|GBM - Glioblastoma multiforme(186;3.57e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00533)|COAD - Colon adenocarcinoma(236;0.0609)|Lung(196;0.199)		CTCATGAGCACGACCAGCATG	0.507000													13	62					0	0	0	0
THBS1	7057	broad.mit.edu	37	15	39874946	39874946	+	Missense_Mutation	SNP	A	G	G			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr15:39874946A>G	uc001zkh.2	+	3	799	c.620A>G	c.(619-621)AAT>AGT	p.N207S		NM_003246	NP_003237	P07996	TSP1_HUMAN	thrombospondin 1 precursor	207	TSP N-terminal.				activation of MAPK activity|anti-apoptosis|apoptosis|cell adhesion|cell cycle arrest|cell migration|cellular response to heat|chronic inflammatory response|engulfment of apoptotic cell|immune response|induction of apoptosis|negative regulation of angiogenesis|negative regulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|negative regulation of blood vessel endothelial cell migration|negative regulation of caspase activity|negative regulation of cGMP-mediated signaling|negative regulation of dendritic cell antigen processing and presentation|negative regulation of endothelial cell proliferation|negative regulation of fibrinolysis|negative regulation of fibroblast growth factor receptor signaling pathway|negative regulation of focal adhesion assembly|negative regulation of interleukin-12 production|negative regulation of nitric oxide mediated signal transduction|negative regulation of plasma membrane long-chain fatty acid transport|negative regulation of plasminogen activation|peptide cross-linking|platelet activation|platelet degranulation|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of fibroblast migration|positive regulation of macrophage activation|positive regulation of macrophage chemotaxis|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|positive regulation of reactive oxygen species metabolic process|positive regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transforming growth factor-beta1 production|positive regulation of translation|positive regulation of tumor necrosis factor biosynthetic process|response to calcium ion|response to drug|response to glucose stimulus|response to hypoxia|response to magnesium ion|response to progesterone stimulus|sprouting angiogenesis	external side of plasma membrane|extracellular matrix|fibrinogen complex|platelet alpha granule lumen	calcium ion binding|collagen V binding|eukaryotic cell surface binding|fibrinogen binding|fibroblast growth factor 2 binding|fibronectin binding|heparin binding|identical protein binding|integrin binding|laminin binding|low-density lipoprotein particle binding|phosphatidylserine binding|proteoglycan binding|structural molecule activity|transforming growth factor beta binding			ovary(3)|central_nervous_system(3)	6		all_cancers(109;1.35e-17)|all_epithelial(112;2.07e-15)|Lung NSC(122;4.44e-11)|all_lung(180;1.11e-09)|Melanoma(134;0.0574)|Colorectal(260;0.117)|Ovarian(310;0.223)		GBM - Glioblastoma multiforme(113;2.77e-06)|BRCA - Breast invasive adenocarcinoma(123;0.105)	Becaplermin(DB00102)	GTCAATGACAATTTCCAGGTG	0.552000													3	30					0	0	0	0
C15orf63	25764	broad.mit.edu	37	15	44092849	44092849	+	Missense_Mutation	SNP	A	T	T			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr15:44092849A>T	uc001ztf.2	+	1	229	c.53A>T	c.(52-54)GAG>GTG	p.E18V	ELL3_uc001zsx.1_5'Flank|C15orf63_uc001ztb.2_Missense_Mutation_p.E64V|SERINC4_uc001ztc.1_5'Flank|SERINC4_uc001ztd.1_5'Flank|SERINC4_uc010bds.1_5'Flank|SERINC4_uc001zte.1_5'Flank|C15orf63_uc001ztg.1_Missense_Mutation_p.E10V	NM_016400	NP_057484	Q9NX55	HYPK_HUMAN	chromosome 15 open reading frame 63	18											0						GTGGAGCTGGAGTTGGAGACT	0.632000													9	15					0	0	0	0
CGNL1	84952	broad.mit.edu	37	15	57734631	57734631	+	Missense_Mutation	SNP	G	C	C			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr15:57734631G>C	uc002aeg.2	+	4	1834	c.1758G>C	c.(1756-1758)CAG>CAC	p.Q586H	CGNL1_uc010bfw.2_Missense_Mutation_p.Q586H	NM_032866	NP_116255	Q0VF96	CGNL1_HUMAN	cingulin-like 1	586						myosin complex|tight junction	motor activity			skin(6)|ovary(4)|central_nervous_system(1)	11				all cancers(107;0.121)|GBM - Glioblastoma multiforme(80;0.186)		AGAAAATCCAGACCTTAAAGT	0.408000													14	52					0	0	0	0
HEXA	3073	broad.mit.edu	37	15	72668095	72668095	+	Silent	SNP	G	A	A			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr15:72668095G>A	uc002aun.3	-	1	426	c.219C>T	c.(217-219)TTC>TTT	p.F73F	CELF6_uc002auk.3_RNA|HEXA_uc010ukn.1_Silent_p.F73F|HEXA_uc002auo.3_5'UTR|HEXA_uc010bix.2_Silent_p.F73F|HEXA_uc010biy.2_5'UTR|HEXA_uc010uko.1_5'UTR|HEXA_uc010biz.1_RNA|C15orf34_uc010ukp.1_5'Flank	NM_000520	NP_000511	P06865	HEXA_HUMAN	hexosaminidase A preproprotein	73					cell death	lysosome	beta-N-acetylhexosaminidase activity|cation binding|protein heterodimerization activity			ovary(3)|upper_aerodigestive_tract(1)	4						ACCCGGAACCGAAAAGCAGGT	0.627000													24	161					0	0	0	0
CLK3	1198	broad.mit.edu	37	15	74919948	74919948	+	Missense_Mutation	SNP	C	A	A			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr15:74919948C>A	uc010uln.1	+	9	1886	c.1425C>A	c.(1423-1425)GAC>GAA	p.D475E	CLK3_uc002ayg.3_Missense_Mutation_p.D327E|CLK3_uc002ayh.3_Missense_Mutation_p.D106E|CLK3_uc002ayj.3_Missense_Mutation_p.D304E|CLK3_uc002ayk.3_Missense_Mutation_p.D254E|CLK3_uc002ayl.3_Missense_Mutation_p.D160E	NM_001130028	NP_001123500	P49761	CLK3_HUMAN	CDC-like kinase 3 isoform a	475	Protein kinase.					acrosomal vesicle|nucleus	ATP binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			stomach(2)	2						CCACATTTGACCATGAGCACC	0.562000													33	110					9.17885e-22	1.06593e-21	1	0
BTBD1	53339	broad.mit.edu	37	15	83718833	83718833	+	Missense_Mutation	SNP	A	T	T			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr15:83718833A>T	uc002bjn.2	-	3	859	c.656T>A	c.(655-657)ATT>AAT	p.I219N	BTBD1_uc002bjo.2_Missense_Mutation_p.I219N	NM_025238	NP_079514	Q9H0C5	BTBD1_HUMAN	BTB (POZ) domain containing 1 isoform 1	219						cytoplasmic mRNA processing body|protein complex	protein binding			ovary(1)|central_nervous_system(1)	2				all cancers(203;0.000186)		ACCTATATCAATATCAGTAAA	0.358000													6	45					0	0	0	0
C15orf42	90381	broad.mit.edu	37	15	90127621	90127621	+	Missense_Mutation	SNP	G	T	T			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr15:90127621G>T	uc002boe.2	+	3	1039	c.1039G>T	c.(1039-1041)GCC>TCC	p.A347S		NM_152259	NP_689472	Q7Z2Z1	TICRR_HUMAN	leucine-rich repeat kinase 1	347					cell cycle|DNA repair|DNA replication|formation of translation preinitiation complex|G2/M transition checkpoint|mitotic cell cycle DNA replication checkpoint|regulation of DNA-dependent DNA replication initiation|response to ionizing radiation	nucleus	chromatin binding|protein binding			ovary(4)|central_nervous_system(2)|skin(1)	7	Lung NSC(78;0.0237)|all_lung(78;0.0478)		BRCA - Breast invasive adenocarcinoma(143;0.128)			AGGCTCAGTGGCCCAGTGGTC	0.488000													16	56					1.15088e-07	1.29474e-07	1	0
PKD1	5310	broad.mit.edu	37	16	2166554	2166554	+	Silent	SNP	G	A	A			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr16:2166554G>A	uc002cos.1	-	8	1907	c.1698C>T	c.(1696-1698)CTC>CTT	p.L566L	PKD1_uc002cot.1_Silent_p.L566L	NM_001009944	NP_001009944	P98161	PKD1_HUMAN	polycystin 1 isoform 1 precursor	566	Extracellular (Potential).				calcium-independent cell-matrix adhesion|homophilic cell adhesion|neuropeptide signaling pathway	basolateral plasma membrane|integral to plasma membrane	protein domain specific binding|sugar binding			central_nervous_system(2)|skin(1)	3						GCGGGGCTGAGAGGCCGTCCT	0.711000													2	2					0	0	0	0
MMP2	4313	broad.mit.edu	37	16	55530841	55530841	+	Silent	SNP	C	T	T			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr16:55530841C>T	uc002ehz.3	+	10	1787	c.1476C>T	c.(1474-1476)TTC>TTT	p.F492F	MMP2_uc010vhd.1_Silent_p.F416F|MMP2_uc010ccc.2_Silent_p.F442F|MMP2_uc002eia.3_5'UTR	NM_004530	NP_004521	P08253	MMP2_HUMAN	matrix metalloproteinase 2 isoform a	492	Required for inhibitor TIMP2 binding.|Hemopexin-like 1.				angiogenesis|collagen catabolic process|proteolysis	extracellular space|membrane|nucleus|proteinaceous extracellular matrix	metalloendopeptidase activity|protein binding|zinc ion binding			large_intestine(3)|ovary(3)|lung(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)	11		Renal(780;0.00183)|Breast(268;0.00354)|Hepatocellular(780;0.00826)|all_neural(199;0.0189)		UCEC - Uterine corpus endometrioid carcinoma (183;0.0185)|all cancers(182;7.16e-45)|Epithelial(162;5.26e-37)|GBM - Glioblastoma multiforme(240;9e-08)|Kidney(780;0.00227)|BRCA - Breast invasive adenocarcinoma(181;0.00786)	Marimastat(DB00786)|Sulindac(DB00605)	CTGCCAGGTTCATTTGGCGGA	0.592000													6	65					0	0	0	0
CDH5	1003	broad.mit.edu	37	16	66432402	66432402	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr16:66432402G>A	uc002eom.3	+	10	1685	c.1529G>A	c.(1528-1530)CGA>CAA	p.R510Q		NM_001795	NP_001786	P33151	CADH5_HUMAN	cadherin 5, type 2 preproprotein	510	Cadherin 5.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion|regulation of establishment of cell polarity	integral to membrane|membrane fraction	beta-catenin binding|calcium ion binding|ion channel binding|receptor binding			ovary(2)|lung(2)|central_nervous_system(1)|skin(1)	6		Ovarian(137;0.0955)		OV - Ovarian serous cystadenocarcinoma(108;0.107)		ATAACACCACGAAACGTGAAG	0.443000													3	43					0	0	0	0
GLG1	2734	broad.mit.edu	37	16	74537551	74537551	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr16:74537551G>A	uc002fcy.3	-	4	702	c.652C>T	c.(652-654)CAG>TAG	p.Q218*	GLG1_uc002fcx.2_Nonsense_Mutation_p.Q218*|GLG1_uc002fcw.3_Nonsense_Mutation_p.Q207*|GLG1_uc002fcz.3_5'UTR	NM_001145667	NP_001139139	Q92896	GSLG1_HUMAN	golgi apparatus protein 1 isoform 3	218	Extracellular (Potential).|Cys-rich GLG1 3.					Golgi membrane|integral to membrane	receptor binding			ovary(1)|breast(1)	2						GTAATGTACTGGTGACACTGA	0.423000													21	104					0	0	0	0
TP53	7157	broad.mit.edu	37	17	7578177	7578177	+	Missense_Mutation	SNP	C	A	A			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr17:7578177C>A	uc002gim.2	-	6	866	c.672G>T	c.(670-672)GAG>GAT	p.E224D	TP53_uc002gig.1_Missense_Mutation_p.E224D|TP53_uc002gih.2_Missense_Mutation_p.E224D|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.E92D|TP53_uc010cng.1_Missense_Mutation_p.E92D|TP53_uc002gii.1_Missense_Mutation_p.E92D|TP53_uc010cnh.1_Missense_Mutation_p.E224D|TP53_uc010cni.1_Missense_Mutation_p.E224D|TP53_uc002gij.2_Missense_Mutation_p.E224D|TP53_uc010cnj.1_Intron|TP53_uc002gin.2_Missense_Mutation_p.E131D|TP53_uc002gio.2_Missense_Mutation_p.E92D|TP53_uc010vug.1_Missense_Mutation_p.E185D	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	224	Required for interaction with FBXO42.||Interaction with HIPK1 (By similarity).|Interaction with AXIN1 (By similarity).		E -> D (in sporadic cancers; somatic mutation).|E -> G (in sporadic cancers; somatic mutation).|E -> V (in a sporadic cancer; somatic mutation).|E -> K (in sporadic cancers; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.E224D(11)|p.0?(7)|p.E224E(6)|p.E224K(5)|p.E224*(4)|p.?(3)|p.E224G(2)|p.E224fs*4(1)|p.E224fs*5(1)|p.V218_E224delVPYEPPE(1)|p.E224fs*23(1)|p.V225fs*24(1)|p.E224fs*24(1)|p.E224_V225insXX(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		CAAACCAGACCTCAGGCGGCT	0.522000		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			8	6					5.18039e-06	5.62294e-06	1	0
MYH1	4619	broad.mit.edu	37	17	10418213	10418213	+	Splice_Site	SNP	C	G	G			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr17:10418213C>G	uc002gmo.2	-	6	600	c.506_splice	c.e6-1	p.D169_splice	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult							muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						TTCTCCCGATCTAGAAGAAAA	0.328000													3	80					0	0	0	0
GAS2L2	246176	broad.mit.edu	37	17	34073141	34073141	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr17:34073141G>A	uc002hjv.1	-	6	1403	c.1375C>T	c.(1375-1377)CCT>TCT	p.P459S		NM_139285	NP_644814	Q8NHY3	GA2L2_HUMAN	growth arrest-specific 2 like 2	459					cell cycle arrest	cytoplasm|cytoskeleton				ovary(1)|skin(1)	2		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		AAGGAACGAGGCAGGGGAGAT	0.632000													21	99					0	0	0	0
OR4D1	26689	broad.mit.edu	37	17	56233093	56233093	+	Silent	SNP	C	T	T			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr17:56233093C>T	uc010wno.1	+	1	579	c.579C>T	c.(577-579)TCC>TCT	p.S193S	MSX2P1_uc002ivn.2_5'Flank	NM_012374	NP_036506	Q15615	OR4D1_HUMAN	olfactory receptor, family 4, subfamily D,	193	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						CTGATACCTCCCTCCTGGAGT	0.493000													36	48					0	0	0	0
MIF4GD	57409	broad.mit.edu	37	17	73264171	73264171	+	Missense_Mutation	SNP	A	T	T			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr17:73264171A>T	uc002jnr.2	-	3	314	c.185T>A	c.(184-186)ATC>AAC	p.I62N	MIF4GD_uc002jno.2_Missense_Mutation_p.I103N|MIF4GD_uc002jnp.2_Missense_Mutation_p.I96N|MIF4GD_uc002jnq.2_Missense_Mutation_p.I103N			A9UHW6	MI4GD_HUMAN	RecName: Full=MIF4G domain-containing protein; AltName: Full=SLBP-interacting protein 1;          Short=hSLIP1;	62	MIF4G.				regulation of translation|RNA metabolic process	cytoplasm|nucleus	protein C-terminus binding			ovary(1)	1	all_cancers(13;1.25e-07)|all_epithelial(9;2.63e-08)|Breast(9;1.06e-07)		all cancers(21;3.02e-07)|Epithelial(20;2.92e-06)			AACCTGAATGATGGCGTAGCA	0.562000													6	42					0	0	0	0
DNAH17	8632	broad.mit.edu	37	17	76420210	76420210	+	Missense_Mutation	SNP	C	G	G			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr17:76420210C>G	uc010dhp.1	-	26	4388	c.4166G>C	c.(4165-4167)GGA>GCA	p.G1389A	PGS1_uc002jvm.2_3'UTR|PGS1_uc010wtt.1_RNA|PGS1_uc010dho.2_RNA|PGS1_uc002jvn.2_3'UTR|PGS1_uc002jvo.2_RNA|DNAH17_uc002jvq.2_Missense_Mutation_p.G674A|DNAH17_uc002jvs.2_RNA					SubName: Full=DNAH17 variant protein; Flags: Fragment;											ovary(6)|breast(2)|skin(1)	9			BRCA - Breast invasive adenocarcinoma(99;0.00294)|OV - Ovarian serous cystadenocarcinoma(97;0.0656)			AGCGATGACTCCAGTCTGGGT	0.607000													7	34					0	0	0	0
FAM38B	63895	broad.mit.edu	37	18	10672764	10672764	+	Silent	SNP	C	T	T	rs138454862	byFrequency	TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr18:10672764C>T	uc002kor.3	-	13	1940	c.1800G>A	c.(1798-1800)CCG>CCA	p.P600P	FAM38B_uc002koq.2_Silent_p.P435P	NM_022068	NP_071351	Q9H5I5	PIEZ2_HUMAN	family with sequence similarity 38, member B	2643						integral to membrane	ion channel activity			ovary(1)	1						CCTGAGAGTTCGGATTGTATA	0.438000													11	90					0	0	0	0
CABLES1	91768	broad.mit.edu	37	18	20837210	20837210	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr18:20837210G>A	uc002kuc.2	+	10	1781	c.1781G>A	c.(1780-1782)CGG>CAG	p.R594Q	C18orf45_uc010xaq.1_Intron|CABLES1_uc002kub.2_Missense_Mutation_p.R97Q|CABLES1_uc002kud.2_Missense_Mutation_p.R329Q	NM_001100619	NP_001094089	Q8TDN4	CABL1_HUMAN	Cdk5 and Abl enzyme substrate 1 isoform 2	594					blood coagulation|cell cycle|cell division|regulation of cell cycle|regulation of cell division	cytosol|nucleus	cyclin-dependent protein kinase regulator activity|protein binding			breast(1)	1	all_cancers(21;0.000102)|all_epithelial(16;2.48e-06)|Lung NSC(20;0.00696)|all_lung(20;0.0197)|Colorectal(14;0.0202)|Ovarian(20;0.127)					GAGAAGTTCCGGCTGAACAGG	0.448000													8	75					0	0	0	0
ATP9B	374868	broad.mit.edu	37	18	76873289	76873289	+	Missense_Mutation	SNP	A	T	T			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr18:76873289A>T	uc002lmx.2	+	4	507	c.493A>T	c.(493-495)ATA>TTA	p.I165L	ATP9B_uc002lmv.1_RNA|ATP9B_uc002lmw.1_Missense_Mutation_p.I165L|ATP9B_uc002lmy.1_RNA|ATP9B_uc002lmz.1_5'UTR|ATP9B_uc002lmu.2_Missense_Mutation_p.I165L	NM_198531	NP_940933	O43861	ATP9B_HUMAN	ATPase, class II, type 9B	165	Helical; (Potential).				ATP biosynthetic process	integral to membrane	aminophospholipid transporter activity|ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|cation-transporting ATPase activity|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(3)	3		Esophageal squamous(42;0.018)|Melanoma(33;0.0964)|Prostate(75;0.171)		OV - Ovarian serous cystadenocarcinoma(15;1.44e-07)|BRCA - Breast invasive adenocarcinoma(31;0.0405)		TTTTCTAGTAATATCCTGCTC	0.294000													6	34					0	0	0	0
ZNRF4	148066	broad.mit.edu	37	19	5456159	5456159	+	Silent	SNP	G	A	A			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr19:5456159G>A	uc002mca.3	+	1	734	c.657G>A	c.(655-657)TCG>TCA	p.S219S		NM_181710	NP_859061	Q8WWF5	ZNRF4_HUMAN	zinc and ring finger 4 precursor	219	Extracellular (Potential).|PA.					integral to membrane	zinc ion binding			large_intestine(2)	2				UCEC - Uterine corpus endometrioid carcinoma (162;0.0002)		AGGCCGCCTCGCAGGACCTGC	0.667000													11	77					0	0	0	0
PPAN-P2RY11	692312	broad.mit.edu	37	19	10225067	10225067	+	Missense_Mutation	SNP	T	A	A			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr19:10225067T>A	uc002mna.2	+	13	2038	c.2038T>A	c.(2038-2040)TCC>ACC	p.S680T	PPAN-P2RY11_uc010xla.1_3'UTR|P2RY11_uc002mnc.2_Missense_Mutation_p.S260T	NM_001040664	NP_001035754	Q9NQ55	SSF1_HUMAN	PPAN-P2RY11 protein	Error:Variant_position_missing_in_Q9NQ55_after_alignment					RNA splicing	nucleolus	protein binding			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(20;2.19e-08)|Epithelial(33;1.76e-05)|all cancers(31;3.54e-05)			CTACGCCAGCTCCTATGTGCC	0.677000													10	78					0	0	0	0
ZNF69	7620	broad.mit.edu	37	19	12014459	12014459	+	Silent	SNP	G	A	A			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr19:12014459G>A	uc002mst.3	+	2	162	c.93G>A	c.(91-93)CAG>CAA	p.Q31Q		NM_021915	NP_068734	Q9UC07	ZNF69_HUMAN	zinc finger protein 69	45	KRAB.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(1)	1				Lung(535;0.011)		ATATTTCCCAGAGGAAACTCT	0.478000													12	88					0	0	0	0
CPAMD8	27151	broad.mit.edu	37	19	17038880	17038880	+	Silent	SNP	G	A	A			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr19:17038880G>A	uc002nfb.2	-	25	3482	c.3450C>T	c.(3448-3450)TTC>TTT	p.F1150F		NM_015692	NP_056507	Q8IZJ3	CPMD8_HUMAN	C3 and PZP-like, alpha-2-macroglobulin domain	1103						extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			ovary(4)|breast(4)|large_intestine(3)|pancreas(1)|skin(1)	13						CCCCCAGGGTGAAGGCCTCGC	0.632000													6	57					0	0	0	0
HAPLN4	404037	broad.mit.edu	37	19	19371769	19371769	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr19:19371769G>A	uc002nmb.2	-	3	392	c.337C>T	c.(337-339)CGT>TGT	p.R113C	HAPLN4_uc002nmc.2_Missense_Mutation_p.R113C	NM_023002	NP_075378	Q86UW8	HPLN4_HUMAN	hyaluronan and proteoglycan link protein 4	113	Ig-like C2-type.				cell adhesion	proteinaceous extracellular matrix	hyaluronic acid binding			pancreas(1)	1			Epithelial(12;0.00575)			GCCCGCCCACGGTAGCTGCCG	0.677000													3	57					0	0	0	0
ZNF30	90075	broad.mit.edu	37	19	35435405	35435405	+	Missense_Mutation	SNP	A	T	T			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr19:35435405A>T	uc010edp.1	+	5	1913	c.1535A>T	c.(1534-1536)TAT>TTT	p.Y512F	ZNF30_uc002nxf.2_Missense_Mutation_p.Y431F|ZNF30_uc010edq.1_Missense_Mutation_p.Y513F|ZNF30_uc010edr.1_Missense_Mutation_p.Y513F	NM_194325	NP_919306	P17039	ZNF30_HUMAN	zinc finger protein 30 isoform b	512	C2H2-type 15.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|central_nervous_system(1)	2	all_lung(56;8.38e-08)|Lung NSC(56;1.31e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0849)	GBM - Glioblastoma multiforme(1328;0.0265)		AAGAAGCCCTATGAGTGTAAG	0.423000													4	27					0	0	0	0
DMKN	93099	broad.mit.edu	37	19	36003956	36003956	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr19:36003956G>A	uc002nzm.3	-	1	605	c.422C>T	c.(421-423)GCT>GTT	p.A141V	DMKN_uc002nzj.2_5'Flank|DMKN_uc002nzk.3_5'Flank|DMKN_uc002nzl.3_5'Flank|DMKN_uc002nzo.3_Missense_Mutation_p.A141V|DMKN_uc002nzn.3_Missense_Mutation_p.A141V|DMKN_uc002nzw.2_5'Flank|DMKN_uc002nzr.2_5'Flank|DMKN_uc002nzp.2_5'Flank|DMKN_uc002nzq.2_5'Flank|DMKN_uc002nzt.2_5'Flank|DMKN_uc002nzs.2_5'Flank|DMKN_uc002nzu.2_5'Flank|DMKN_uc002nzv.2_5'Flank|DMKN_uc010xsv.1_5'Flank|DMKN_uc010xsw.1_5'Flank|DMKN_uc002nzx.3_5'Flank|DMKN_uc002nzy.3_5'Flank|DMKN_uc002nzz.2_5'Flank|DMKN_uc002oac.3_Missense_Mutation_p.A141V|DMKN_uc010eeb.2_Missense_Mutation_p.A141V|DMKN_uc002oaa.3_Missense_Mutation_p.A141V|DMKN_uc002oab.3_Missense_Mutation_p.A141V	NM_033317	NP_201574	Q6E0U4	DMKN_HUMAN	dermokine isoform 2 precursor	141	Gly-rich.					extracellular region				large_intestine(1)|ovary(1)|skin(1)	3	all_lung(56;1.89e-08)|Lung NSC(56;2.9e-08)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0724)			ACTCACCCAAGCACCATTGTG	0.582000													8	39					0	0	0	0
ZNF527	84503	broad.mit.edu	37	19	37879433	37879433	+	Missense_Mutation	SNP	G	C	C			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr19:37879433G>C	uc010efk.1	+	5	593	c.482G>C	c.(481-483)AGA>ACA	p.R161T	ZNF527_uc002ogf.3_Missense_Mutation_p.R129T|ZNF527_uc010xtq.1_RNA	NM_032453	NP_115829	Q8NB42	ZN527_HUMAN	zinc finger protein 527	161					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			ACTGGGAAAAGAGACAATGAA	0.383000													4	83					0	0	0	0
CATSPERG	57828	broad.mit.edu	37	19	38849158	38849158	+	Missense_Mutation	SNP	T	C	C			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr19:38849158T>C	uc002oih.3	+	13	1540	c.1453T>C	c.(1453-1455)TAC>CAC	p.Y485H	CATSPERG_uc002oig.3_Missense_Mutation_p.Y445H|CATSPERG_uc002oif.3_Missense_Mutation_p.Y125H|CATSPERG_uc010efw.2_RNA	NM_021185	NP_067008	Q6ZRH7	CTSRG_HUMAN	cation channel, sperm-associated, gamma	485	Extracellular (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane				ovary(1)|skin(1)	2						CTGTAACCCGTACAACAATCT	0.562000													13	70					0	0	0	0
ZFP112	7771	broad.mit.edu	37	19	44832196	44832196	+	Missense_Mutation	SNP	T	G	G			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr19:44832196T>G	uc010ejj.2	-	5	2245	c.2132A>C	c.(2131-2133)CAT>CCT	p.H711P	ZFP112_uc002ozc.3_Missense_Mutation_p.H705P|ZFP112_uc010xwy.1_Missense_Mutation_p.H728P|ZFP112_uc010xwz.1_Missense_Mutation_p.H710P	NM_001083335	NP_001076804	Q9UJU3	ZF112_HUMAN	zinc finger protein 228 isoform 1	711	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(2)	5						GACACTCTGATGACTCTGAAG	0.458000													8	106					0	0	0	0
PNMAL2	57469	broad.mit.edu	37	19	46998632	46998632	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr19:46998632C>T	uc002pes.2	-	1	538	c.91G>A	c.(91-93)GAG>AAG	p.E31K	uc002peu.1_3'UTR	NM_020709	NP_065760	Q9ULN7	PNML2_HUMAN	PNMA-like 2	31										central_nervous_system(1)	1		Ovarian(192;0.00965)|all_neural(266;0.0459)		OV - Ovarian serous cystadenocarcinoma(262;0.000322)|all cancers(93;0.00233)|GBM - Glioblastoma multiforme(486;0.0421)|Epithelial(262;0.0427)		tctgcctgctccaggccctcc	0.030000													27	56					0	0	0	0
DHX34	9704	broad.mit.edu	37	19	47856504	47856504	+	Missense_Mutation	SNP	C	G	G			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr19:47856504C>G	uc010xyn.1	+	2	558	c.217C>G	c.(217-219)CTC>GTC	p.L73V	DHX34_uc010elc.1_Missense_Mutation_p.L73V	NM_014681	NP_055496	Q14147	DHX34_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 34	73						intracellular	ATP binding|ATP-dependent helicase activity|RNA binding|zinc ion binding			ovary(4)|upper_aerodigestive_tract(1)	5		all_cancers(25;1.65e-09)|all_epithelial(76;9.95e-08)|all_lung(116;7.27e-07)|Lung NSC(112;1.6e-06)|Ovarian(192;0.0139)|all_neural(266;0.026)|Breast(70;0.0503)		all cancers(93;7.16e-05)|OV - Ovarian serous cystadenocarcinoma(262;0.000489)|GBM - Glioblastoma multiforme(486;0.00413)|Epithelial(262;0.0132)		ATTCCAGAATCTCAAGACCTC	0.537000													4	111					0	0	0	0
ZNF761	388561	broad.mit.edu	37	19	53958826	53958826	+	Silent	SNP	G	A	A			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr19:53958826G>A	uc010eqp.2	+	7	1523	c.1065G>A	c.(1063-1065)AAG>AAA	p.K355K	ZNF761_uc010ydy.1_Silent_p.K301K|ZNF761_uc002qbt.1_Silent_p.K301K	NM_001008401	NP_001008401	Q86XN6	ZN761_HUMAN	zinc finger protein 761	355	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1				GBM - Glioblastoma multiforme(134;0.00786)		AACCTTACAAGTGTAATGAGT	0.418000													5	151					0	0	0	0
PEG3	5178	broad.mit.edu	37	19	57327205	57327205	+	Missense_Mutation	SNP	T	G	G			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr19:57327205T>G	uc002qnu.2	-	7	2956	c.2605A>C	c.(2605-2607)AAT>CAT	p.N869H	ZIM2_uc010ygq.1_Intron|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_Intron|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Missense_Mutation_p.N840H|PEG3_uc002qnv.2_Missense_Mutation_p.N869H|PEG3_uc002qnw.2_Missense_Mutation_p.N745H|PEG3_uc002qnx.2_Missense_Mutation_p.N743H|PEG3_uc010etr.2_Missense_Mutation_p.N869H	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	869					apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		CGCTTATCATTAAGGTCTGAG	0.438000													9	76					0	0	0	0
ZNF749	388567	broad.mit.edu	37	19	57955191	57955191	+	Silent	SNP	G	A	A			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr19:57955191G>A	uc002qoq.2	+	3	929	c.675G>A	c.(673-675)GAG>GAA	p.E225E	ZNF547_uc002qpm.3_Intron	NM_001023561	NP_001018855	O43361	ZN749_HUMAN	zinc finger protein 749	225	C2H2-type 3; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.221)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0264)|Lung(386;0.177)		GGCCTTATGAGTTCAGTGAAT	0.428000													13	56					0	0	0	0
RPS27A	6233	broad.mit.edu	37	2	55462059	55462059	+	Silent	SNP	G	A	A			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr2:55462059G>A	uc010yow.1	+	5	479	c.282G>A	c.(280-282)AAG>AAA	p.K94K	C2orf63_uc002ryh.2_5'Flank|C2orf63_uc002ryi.2_5'Flank|C2orf63_uc002ryj.2_5'Flank|RPS27A_uc002ryk.2_Silent_p.K94K|RPS27A_uc002ryl.2_RNA|RPS27A_uc002rym.2_RNA	NM_001135592	NP_001129064	P62979	RS27A_HUMAN	ubiquitin and ribosomal protein S27a precursor	94	Lys-rich (highly basic).				activation of MAPK activity|anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|anti-apoptosis|apoptosis|cellular membrane organization|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA repair|endocrine pancreas development|endosome transport|epidermal growth factor receptor signaling pathway|G1/S transition of mitotic cell cycle|I-kappaB kinase/NF-kappaB cascade|induction of apoptosis by extracellular signals|innate immune response|JNK cascade|M/G1 transition of mitotic cell cycle|mRNA metabolic process|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of type I interferon production|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|S phase of mitotic cell cycle|stress-activated MAPK cascade|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|translational elongation|translational termination|viral transcription	cytosolic small ribosomal subunit|endocytic vesicle membrane|endosome membrane|nucleoplasm|plasma membrane	metal ion binding|structural constituent of ribosome			ovary(1)	1						ATAAGCACAAGAGAAAGAAGG	0.398000													12	17					0	0	0	0
USP34	9736	broad.mit.edu	37	2	61570972	61570972	+	Silent	SNP	A	G	G			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr2:61570972A>G	uc002sbe.2	-	16	2500	c.2478T>C	c.(2476-2478)ATT>ATC	p.I826I		NM_014709	NP_055524	Q70CQ2	UBP34_HUMAN	ubiquitin specific protease 34	826					positive regulation of canonical Wnt receptor signaling pathway|protein K48-linked deubiquitination|ubiquitin-dependent protein catabolic process|Wnt receptor signaling pathway		cysteine-type endopeptidase activity|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(8)|breast(5)|skin(3)|lung(2)|prostate(1)	19			Epithelial(17;0.229)			GTTCATGGTAAATGGAAGCTA	0.363000													17	94					0	0	0	0
CLEC4F	165530	broad.mit.edu	37	2	71036884	71036884	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr2:71036884C>T	uc002shf.2	-	6	1722	c.1645G>A	c.(1645-1647)GCC>ACC	p.A549T	CLEC4F_uc010yqv.1_Missense_Mutation_p.A549T	NM_173535	NP_775806	Q8N1N0	CLC4F_HUMAN	C-type lectin, superfamily member 13	549	Extracellular (Potential).|C-type lectin.				endocytosis	integral to membrane	receptor activity|sugar binding			ovary(5)	5						TTGTTCTGGGCGGCGTTGAAT	0.557000													11	56					0	0	0	0
GCC2	9648	broad.mit.edu	37	2	109116150	109116150	+	Missense_Mutation	SNP	A	G	G			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr2:109116150A>G	uc002tec.2	+	22	5078	c.4924A>G	c.(4924-4926)ATA>GTA	p.I1642V	GCC2_uc002ted.2_Missense_Mutation_p.I1541V	NM_181453	NP_852118	Q8IWJ2	GCC2_HUMAN	GRIP and coiled-coil domain-containing 2	1642	Mediates interaction with RAB9A.|GRIP.				Golgi ribbon formation|late endosome to Golgi transport|microtubule anchoring|microtubule organizing center organization|protein localization in Golgi apparatus|protein targeting to lysosome|recycling endosome to Golgi transport|regulation of protein exit from endoplasmic reticulum	membrane|trans-Golgi network	identical protein binding			ovary(1)	1						TCTTCCTGTTATAAATACGAT	0.443000													19	277					0	0	0	0
SMPD4	55627	broad.mit.edu	37	2	130911487	130911487	+	Missense_Mutation	SNP	T	A	A			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr2:130911487T>A	uc002tqq.1	-	17	2318	c.1798A>T	c.(1798-1800)ATC>TTC	p.I600F	SMPD4_uc002tqo.1_Missense_Mutation_p.I132F|SMPD4_uc002tqp.1_Missense_Mutation_p.I339F|SMPD4_uc010yzy.1_Missense_Mutation_p.I349F|SMPD4_uc010yzz.1_Missense_Mutation_p.I264F|SMPD4_uc002tqr.1_Missense_Mutation_p.I571F|SMPD4_uc002tqs.1_Missense_Mutation_p.I468F|SMPD4_uc002tqt.1_Missense_Mutation_p.I449F|SMPD4_uc010zaa.1_Missense_Mutation_p.I458F|SMPD4_uc010zab.1_Missense_Mutation_p.I498F|SMPD4_uc010zac.1_Missense_Mutation_p.I341F|SMPD4_uc010zad.1_Missense_Mutation_p.I236F	NM_017951	NP_060421	Q9NXE4	NSMA3_HUMAN	sphingomyelin phosphodiesterase 4 isoform 2	561					sphingomyelin catabolic process	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|trans-Golgi network	metal ion binding|protein binding|sphingomyelin phosphodiesterase activity|sphingomyelin phosphodiesterase D activity				0	Colorectal(110;0.1)				Phosphatidylserine(DB00144)	GCCTGTGTGATGAGCTGAGCG	0.642000													3	35					0	0	0	0
NEB	4703	broad.mit.edu	37	2	152385794	152385794	+	Missense_Mutation	SNP	G	C	C			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr2:152385794G>C	uc010fnx.2	-	118	16753	c.16562C>G	c.(16561-16563)TCC>TGC	p.S5521C	NEB_uc002txr.2_Missense_Mutation_p.S1944C|NEB_uc002txt.3_Missense_Mutation_p.S26C	NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	5521					muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		GGTGCAGTTGGATTTATTTCT	0.393000													5	40					0	0	0	0
CYTIP	9595	broad.mit.edu	37	2	158272595	158272595	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr2:158272595C>T	uc002tzj.1	-	8	746	c.674G>A	c.(673-675)GGA>GAA	p.G225E	CYTIP_uc010zcl.1_Missense_Mutation_p.G119E	NM_004288	NP_004279	O60759	CYTIP_HUMAN	cytohesin 1 interacting protein	225					regulation of cell adhesion	cell cortex|early endosome	protein binding			ovary(1)|kidney(1)|skin(1)	3						AGGCAGGGGTCCAAACAAAGA	0.498000													11	41					0	0	0	0
PPIG	9360	broad.mit.edu	37	2	170492733	170492733	+	Silent	SNP	G	T	T			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr2:170492733G>T	uc002uez.2	+	13	1369	c.1149G>T	c.(1147-1149)GGG>GGT	p.G383G	PPIG_uc010fpx.2_Silent_p.G368G|PPIG_uc010fpy.2_Silent_p.G376G|PPIG_uc002ufb.2_Silent_p.G383G|PPIG_uc002ufd.2_Silent_p.G380G	NM_004792	NP_004783	Q13427	PPIG_HUMAN	peptidylprolyl isomerase G	383					protein folding|RNA splicing	nuclear matrix|nuclear speck	cyclosporin A binding|peptidyl-prolyl cis-trans isomerase activity			ovary(2)|central_nervous_system(1)	3					L-Proline(DB00172)	GGATCAAGGGGGATAAGTAAG	0.353000													12	74					4.36969e-10	4.94164e-10	1	0
TTN	7273	broad.mit.edu	37	2	179434069	179434069	+	Missense_Mutation	SNP	C	G	G			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr2:179434069C>G	uc010zfg.1	-	275	69310	c.69086G>C	c.(69085-69087)AGA>ACA	p.R23029T	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.R16724T|TTN_uc010zfi.1_Missense_Mutation_p.R16657T|TTN_uc010zfj.1_Missense_Mutation_p.R16532T	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	23956							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GTCCAGAACTCTCACAGTAAC	0.423000													12	161					0	0	0	0
TTN	7273	broad.mit.edu	37	2	179664379	179664379	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr2:179664379G>A	uc002und.2	-	6	974	c.749C>T	c.(748-750)CCA>CTA	p.P250L	TTN_uc010zfg.1_Missense_Mutation_p.P250L|TTN_uc010zfh.1_Missense_Mutation_p.P250L|TTN_uc010zfi.1_Missense_Mutation_p.P250L|TTN_uc010zfj.1_Missense_Mutation_p.P250L|TTN_uc002unb.2_Missense_Mutation_p.P250L			Q8WZ42	TITIN_HUMAN	Homo sapiens cDNA FLJ32040 fis, clone NTONG2000858, highly similar to H.sapiens mRNA for titin protein.	250							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGTTTTATGTGGCAGCTGTTG	0.498000													19	47					0	0	0	0
HECW2	57520	broad.mit.edu	37	2	197105285	197105285	+	Silent	SNP	A	G	G			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr2:197105285A>G	uc002utm.1	-	21	3835	c.3652T>C	c.(3652-3654)TTA>CTA	p.L1218L	HECW2_uc002utl.1_Silent_p.L862L	NM_020760	NP_065811	Q9P2P5	HECW2_HUMAN	HECT, C2 and WW domain containing E3 ubiquitin	1218					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm	ubiquitin-protein ligase activity			skin(5)|ovary(5)|lung(4)|pancreas(2)|central_nervous_system(1)|kidney(1)	18						CGGATAATTAACCTGTCCATA	0.308000													10	50					0	0	0	0
FAM117B	150864	broad.mit.edu	37	2	203621983	203621983	+	Silent	SNP	G	A	A			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr2:203621983G>A	uc010zhx.1	+	6	1162	c.1152G>A	c.(1150-1152)CAG>CAA	p.Q384Q		NM_173511	NP_775782	Q6P1L5	F117B_HUMAN	amyotrophic lateral sclerosis 2 (juvenile)	384										ovary(1)	1						CCCTTGTACAGAGAAGTAGCA	0.498000													4	50					0	0	0	0
UGT1A4	54657	broad.mit.edu	37	2	234627538	234627538	+	Silent	SNP	C	G	G			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr2:234627538C>G	uc002vux.2	+	1	101	c.72C>G	c.(70-72)CCC>CCG	p.P24P	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Intron|UGT1A10_uc002vur.2_Intron|UGT1A9_uc010zmw.1_Intron|UGT1A9_uc002vus.2_Intron|UGT1A7_uc010zmx.1_Intron|UGT1A7_uc002vut.2_Intron|UGT1A6_uc002vuu.2_Intron|UGT1A6_uc010zmy.1_Intron|UGT1A6_uc002vuv.3_Intron|UGT1A5_uc010zmz.1_Intron|UGT1A5_uc002vuw.2_Intron|UGT1A4_uc010zna.1_Silent_p.P24P	NM_007120	NP_009051	P22310	UD14_HUMAN	UDP glycosyltransferase 1 family, polypeptide A4	24					xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	enzyme binding|glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity			skin(1)	1		Breast(86;0.000765)|all_lung(227;0.00266)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0327)|Lung NSC(271;0.0456)|Lung SC(224;0.128)		Epithelial(121;3.49e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000504)|Lung(119;0.0026)|LUSC - Lung squamous cell carcinoma(224;0.00624)	Imipramine(DB00458)|Lamotrigine(DB00555)|Paricalcitol(DB00910)|Trifluoperazine(DB00831)	GTGTCCAGCCCTGGGCTGAGA	0.657000													10	58					0	0	0	0
ANKMY1	51281	broad.mit.edu	37	2	241463753	241463753	+	Missense_Mutation	SNP	T	C	C			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr2:241463753T>C	uc002vyz.1	-	7	1343	c.1114A>G	c.(1114-1116)ATG>GTG	p.M372V	ANKMY1_uc002vza.1_Missense_Mutation_p.M231V|ANKMY1_uc010fzd.1_Missense_Mutation_p.M461V|ANKMY1_uc002vzb.1_Missense_Mutation_p.M231V|ANKMY1_uc002vzc.1_Missense_Mutation_p.M231V|ANKMY1_uc002vzd.1_Missense_Mutation_p.M231V|ANKMY1_uc010fze.1_Missense_Mutation_p.M41V|ANKMY1_uc002vze.2_Missense_Mutation_p.M133V	NM_016552	NP_057636	Q9P2S6	ANKY1_HUMAN	ankyrin repeat and MYND domain containing 1	372							zinc ion binding			central_nervous_system(1)	1		all_epithelial(40;2.79e-15)|Breast(86;2.41e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0335)|Lung NSC(271;0.106)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;1.03e-30)|all cancers(36;4.78e-28)|OV - Ovarian serous cystadenocarcinoma(60;1.45e-14)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;7.8e-06)|Lung(119;0.00271)|LUSC - Lung squamous cell carcinoma(224;0.01)|Colorectal(34;0.0101)|COAD - Colon adenocarcinoma(134;0.0476)		TTTGTGTCCATAAATGATGAT	0.463000													16	75					0	0	0	0
SLC23A2	9962	broad.mit.edu	37	20	4855261	4855261	+	Silent	SNP	T	A	A			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr20:4855261T>A	uc002wlg.1	-	10	1281	c.906A>T	c.(904-906)GGA>GGT	p.G302G	SLC23A2_uc010zqr.1_Silent_p.G187G|SLC23A2_uc002wlh.1_Silent_p.G302G|SLC23A2_uc002wli.2_Silent_p.G301G	NM_005116	NP_005107	Q9UGH3	S23A2_HUMAN	solute carrier family 23 (nucleobase	302					L-ascorbic acid metabolic process|molecular hydrogen transport|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|transepithelial L-ascorbic acid transport	apical plasma membrane|integral to plasma membrane|membrane fraction	nucleobase transmembrane transporter activity|sodium-dependent L-ascorbate transmembrane transporter activity|sodium-dependent multivitamin transmembrane transporter activity			ovary(2)	2						ACGCAGTCCATCCTTTCTTGG	0.383000													7	131					0	0	0	0
ZNFX1	57169	broad.mit.edu	37	20	47888006	47888006	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr20:47888006G>A	uc002xui.2	-	3	590	c.343C>T	c.(343-345)CGC>TGC	p.R115C		NM_021035	NP_066363	Q9P2E3	ZNFX1_HUMAN	zinc finger, NFX1-type containing 1	115							metal ion binding			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(12;0.00173)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			GGTGGTCTGCGGTTCCTACAG	0.557000													19	244					0	0	0	0
SALL4	57167	broad.mit.edu	37	20	50407919	50407919	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr20:50407919G>A	uc002xwh.3	-	2	1204	c.1103C>T	c.(1102-1104)GCG>GTG	p.A368V	SALL4_uc010gii.2_Missense_Mutation_p.A368V|SALL4_uc002xwi.3_Intron	NM_020436	NP_065169	Q9UJQ4	SALL4_HUMAN	sal-like 4	368					transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						GACATCCACCGCGGAGATGTT	0.562000													8	56					0	0	0	0
BAGE2	85319	broad.mit.edu	37	21	11049619	11049619	+	Silent	SNP	T	A	A			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr21:11049619T>A	uc002yit.1	-	4	490	c.282A>T	c.(280-282)CGA>CGT	p.R94R		NM_182482	NP_872288			B melanoma antigen family, member 2 precursor												0			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		GCATCTTCCTTCGCTATAATT	0.373000													7	205					0	0	0	0
GNB1L	54584	broad.mit.edu	37	22	19808242	19808242	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr22:19808242G>A	uc002zqe.1	-	3	527	c.133C>T	c.(133-135)CAG>TAG	p.Q45*	GNB1L_uc002zqd.1_Intron|GNB1L_uc002zqf.1_Nonsense_Mutation_p.Q45*	NM_053004	NP_443730	Q9BYB4	GNB1L_HUMAN	guanine nucleotide binding protein	45	WD 1.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction	internal side of plasma membrane|intracellular				breast(1)	1	Colorectal(54;0.0993)					AGGCCACTCTGAGACCTGTTT	0.642000													7	57					0	0	0	0
RFPL3	10738	broad.mit.edu	37	22	32756539	32756539	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr22:32756539G>A	uc003amj.2	+	2	879	c.674G>A	c.(673-675)CGC>CAC	p.R225H	RFPL3_uc010gwn.2_Missense_Mutation_p.R196H|RFPL3S_uc003amk.2_RNA|RFPL3S_uc003aml.2_RNA	NM_001098535	NP_001092005	O75679	RFPL3_HUMAN	ret finger protein-like 3 isoform 1	225	B30.2/SPRY.						zinc ion binding			ovary(1)	1						GATGGAAGCCGCCTCTCTGCC	0.527000													15	71					0	0	0	0
KCNJ4	3761	broad.mit.edu	37	22	38823566	38823566	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr22:38823566G>A	uc003avs.1	-	2	669	c.572C>T	c.(571-573)GCG>GTG	p.A191V	KCNJ4_uc003avt.1_Missense_Mutation_p.A191V	NM_004981	NP_004972	P48050	IRK4_HUMAN	potassium inwardly-rectifying channel J4	191	Cytoplasmic (By similarity).				synaptic transmission	basolateral plasma membrane|voltage-gated potassium channel complex	inward rectifier potassium channel activity|PDZ domain binding				0	Melanoma(58;0.0286)					CGAAATGACCGCGTGGTGGCT	0.637000													4	30					0	0	0	0
THUMPD3	25917	broad.mit.edu	37	3	9426231	9426231	+	Silent	SNP	A	G	G			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr3:9426231A>G	uc003bro.3	+	10	1531	c.1383A>G	c.(1381-1383)GTA>GTG	p.V461V	LOC440944_uc003brm.2_Intron|THUMPD3_uc003brn.3_Silent_p.V461V	NM_001114092	NP_001107564	Q9BV44	THUM3_HUMAN	THUMP domain containing 3	461							methyltransferase activity|protein binding|RNA binding			ovary(1)	1	Medulloblastoma(99;0.227)			OV - Ovarian serous cystadenocarcinoma(96;0.101)		TGCGACACGTATGGCGAAAGG	0.418000													34	108					0	0	0	0
BSN	8927	broad.mit.edu	37	3	49690316	49690316	+	Silent	SNP	G	A	A			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr3:49690316G>A	uc003cxe.3	+	5	3441	c.3327G>A	c.(3325-3327)CTG>CTA	p.L1109L		NM_003458	NP_003449	Q9UPA5	BSN_HUMAN	bassoon protein	1109					synaptic transmission	cell junction|cytoplasm|cytoskeleton|nucleus|synaptosome	metal ion binding			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8				BRCA - Breast invasive adenocarcinoma(193;6.66e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0032)|Kidney(197;0.00336)		CGGAGGAGCTGAGGCAGGCGG	0.642000													13	91					0	0	0	0
MITF	4286	broad.mit.edu	37	3	70014334	70014334	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr3:70014334G>A	uc003dnz.2	+	10	1614	c.1498G>A	c.(1498-1500)GGA>AGA	p.G500R	MITF_uc011bgb.1_Missense_Mutation_p.G448R|MITF_uc003doa.2_Missense_Mutation_p.G499R|MITF_uc003dob.2_Missense_Mutation_p.G484R|MITF_uc003dod.2_Missense_Mutation_p.G475R|MITF_uc003doe.2_Missense_Mutation_p.G393R|MITF_uc003dof.2_Missense_Mutation_p.G399R	NM_198159	NP_937802	O75030	MITF_HUMAN	microphthalmia-associated transcription factor	506					melanocyte differentiation|multicellular organismal development|protein complex assembly	nucleus|protein complex	DNA binding|protein binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription			ovary(2)	2		Lung NSC(201;0.0384)|Prostate(884;0.0526)		BRCA - Breast invasive adenocarcinoma(55;3.07e-05)|Epithelial(33;0.000138)|LUSC - Lung squamous cell carcinoma(21;0.008)|Lung(16;0.0107)|KIRC - Kidney renal clear cell carcinoma(39;0.204)|Kidney(39;0.239)		AGTGTCCCCCGGAGCTTCCAA	0.537000			A		melanoma 		Waardenburg syndrome type 2|Tietz syndrome						4	65					0	0	0	0
EPHA6	285220	broad.mit.edu	37	3	96706382	96706382	+	Missense_Mutation	SNP	A	G	G			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr3:96706382A>G	uc010how.1	+	3	702	c.659A>G	c.(658-660)AAT>AGT	p.N220S	EPHA6_uc003drp.1_Missense_Mutation_p.N220S	NM_001080448	NP_001073917	Q9UF33	EPHA6_HUMAN	EPH receptor A6 isoform a	125	Ephrin-binding.|Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			stomach(5)|lung(4)|central_nervous_system(3)|breast(1)|skin(1)|ovary(1)|kidney(1)	16						GAAACATTTAATCTGTTTTAT	0.398000													10	161					0	0	0	0
KIAA2018	205717	broad.mit.edu	37	3	113377897	113377897	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr3:113377897C>T	uc003eam.2	-	7	3043	c.2632G>A	c.(2632-2634)GAG>AAG	p.E878K	KIAA2018_uc003eal.2_Missense_Mutation_p.E822K	NM_001009899	NP_001009899	Q68DE3	K2018_HUMAN	hypothetical protein LOC205717	878	Ser-rich.				regulation of transcription, DNA-dependent	membrane|nucleus	calcium ion binding|DNA binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity			skin(2)|ovary(1)	3						GATACAGACTCAGGTATTAAT	0.438000													40	95					0	0	0	0
TM4SF1	4071	broad.mit.edu	37	3	149089484	149089484	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr3:149089484G>A	uc003exb.1	-	4	818	c.584C>T	c.(583-585)TCT>TTT	p.S195F	TM4SF1_uc003exc.1_Missense_Mutation_p.S106F	NM_014220	NP_055035	P30408	T4S1_HUMAN	transmembrane 4 superfamily member 1	195	Cytoplasmic (Probable).					integral to plasma membrane					0			LUSC - Lung squamous cell carcinoma(72;0.0378)|Lung(72;0.048)			CTGTTGGTGAGAGCAGCAAAA	0.398000													29	130					0	0	0	0
TNIK	23043	broad.mit.edu	37	3	170928972	170928972	+	Missense_Mutation	SNP	C	G	G			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr3:170928972C>G	uc003fhh.2	-	4	584	c.239G>C	c.(238-240)CGG>CCG	p.R80P	TNIK_uc003fhi.2_Missense_Mutation_p.R80P|TNIK_uc003fhj.2_Missense_Mutation_p.R80P|TNIK_uc003fhk.2_Missense_Mutation_p.R80P|TNIK_uc003fhl.2_Missense_Mutation_p.R80P|TNIK_uc003fhm.2_Missense_Mutation_p.R80P|TNIK_uc003fhn.2_Missense_Mutation_p.R80P|TNIK_uc003fho.2_Missense_Mutation_p.R80P	NM_015028	NP_055843	Q9UKE5	TNIK_HUMAN	TRAF2 and NCK interacting kinase isoform 1	80	Protein kinase.				actin cytoskeleton reorganization|activation of JNKK activity|protein autophosphorylation|regulation of dendrite morphogenesis|Wnt receptor signaling pathway	cytoskeleton|nucleus|recycling endosome	ATP binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			ovary(4)|large_intestine(1)	5	all_cancers(22;2.55e-19)|all_lung(20;2.22e-14)|Ovarian(172;0.00197)|Breast(254;0.122)		LUSC - Lung squamous cell carcinoma(14;3.57e-14)|Lung(28;9.39e-14)			AGCAATATTCCGGTGATGAGA	0.343000													15	76					0	0	0	0
KLHL24	54800	broad.mit.edu	37	3	183381346	183381346	+	Missense_Mutation	SNP	G	C	C			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr3:183381346G>C	uc003flv.2	+	4	1316	c.1021G>C	c.(1021-1023)GAA>CAA	p.E341Q	KLHL24_uc003flw.2_Missense_Mutation_p.E341Q|KLHL24_uc003flx.2_Missense_Mutation_p.E341Q	NM_017644	NP_060114	Q6TFL4	KLH24_HUMAN	DRE1 protein	341	Kelch 1.					axon|cytoplasm|perikaryon				ovary(1)	1	all_cancers(143;2.88e-10)|Ovarian(172;0.0303)		all cancers(12;1.43e-42)|Epithelial(37;1.73e-36)|OV - Ovarian serous cystadenocarcinoma(80;8.75e-22)			TGTAACAGGAGAATGGAAGTC	0.413000													5	111					0	0	0	0
ATP13A4	84239	broad.mit.edu	37	3	193166066	193166066	+	Missense_Mutation	SNP	C	T	T	rs144335118		TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr3:193166066C>T	uc003ftd.2	-	18	2189	c.2081G>A	c.(2080-2082)CGA>CAA	p.R694Q	ATP13A4_uc003fte.1_Missense_Mutation_p.R694Q|ATP13A4_uc011bsr.1_Missense_Mutation_p.R165Q|ATP13A4_uc010hzi.2_RNA	NM_032279	NP_115655	Q4VNC1	AT134_HUMAN	ATPase type 13A4	694	Extracellular (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(2)	2	all_cancers(143;1.76e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;2.72e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;0.000109)		TTCCTTCAATCGATTCTCCAA	0.393000													13	108					0	0	0	0
FGFRL1	53834	broad.mit.edu	37	4	1017629	1017629	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr4:1017629C>T	uc003gce.2	+	5	619	c.458C>T	c.(457-459)TCC>TTC	p.S153F	FGFRL1_uc003gcf.2_Missense_Mutation_p.S153F|FGFRL1_uc003gcg.2_Missense_Mutation_p.S153F|FGFRL1_uc010ibo.2_Missense_Mutation_p.S153F	NM_021923	NP_068742	Q8N441	FGRL1_HUMAN	fibroblast growth factor receptor-like 1	153	Extracellular (Potential).|Ig-like C2-type 2.				regulation of cell growth	integral to membrane|plasma membrane	fibroblast growth factor receptor activity|heparin binding				0			OV - Ovarian serous cystadenocarcinoma(23;0.0158)			ACACAGCCCTCCAAGATGAGG	0.711000													4	8					0	0	0	0
HTT	3064	broad.mit.edu	37	4	3201579	3201579	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr4:3201579C>T	uc011bvq.1	+	42	5640	c.5495C>T	c.(5494-5496)CCG>CTG	p.P1832L		NM_002111	NP_002102	P42858	HD_HUMAN	huntingtin	1830					establishment of mitotic spindle orientation|Golgi organization|retrograde vesicle-mediated transport, Golgi to ER|vesicle transport along microtubule	autophagic vacuole|axon|cytoplasmic vesicle membrane|cytosol|dendrite|endoplasmic reticulum|Golgi apparatus|late endosome|membrane fraction|nucleus|protein complex	beta-tubulin binding|dynactin binding|dynein intermediate chain binding|p53 binding|transcription factor binding			skin(2)|ovary(1)|lung(1)	4		all_epithelial(65;0.18)		UCEC - Uterine corpus endometrioid carcinoma (64;0.187)		ACCACCCACCCGGCCCTGGTG	0.587000													7	46					0	0	0	0
UGT2B15	7366	broad.mit.edu	37	4	69513072	69513072	+	Missense_Mutation	SNP	C	A	A			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr4:69513072C>A	uc011cal.1	-	6	1381	c.1343G>T	c.(1342-1344)AGA>ATA	p.R448I		NM_001076	NP_001067	P54855	UDB15_HUMAN	UDP glycosyltransferase 2B15 precursor	448					steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity				0						ATGATGAATTCTTGATAATTT	0.383000													6	118					0.000157383	0.000165023	1	0
UGT2B11	10720	broad.mit.edu	37	4	70080064	70080064	+	Missense_Mutation	SNP	A	T	T			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr4:70080064A>T	uc003heh.2	-	1	386	c.377T>A	c.(376-378)TTC>TAC	p.F126Y	uc003hei.1_Intron	NM_001073	NP_001064	O75310	UDB11_HUMAN	UDP glucuronosyltransferase 2 family,	126					estrogen metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			ovary(1)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	3						ATCTTTACAGAAGTTTCTAAA	0.333000													12	79					0	0	0	0
CCDC158	339965	broad.mit.edu	37	4	77276585	77276585	+	Missense_Mutation	SNP	C	A	A			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr4:77276585C>A	uc003hkb.3	-	14	2331	c.2178G>T	c.(2176-2178)ATG>ATT	p.M726I		NM_001042784	NP_001036249	Q5M9N0	CD158_HUMAN	coiled-coil domain containing 158	726	Potential.									skin(3)|ovary(2)|pancreas(1)	6						TTGCCACTTTCATAGCTGGAA	0.383000													31	110					1.80694e-10	2.05421e-10	1	0
PTPN13	5783	broad.mit.edu	37	4	87691069	87691069	+	Missense_Mutation	SNP	G	C	C			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr4:87691069G>C	uc003hpz.2	+	29	5117	c.4637G>C	c.(4636-4638)GGA>GCA	p.G1546A	PTPN13_uc003hpy.2_Missense_Mutation_p.G1551A|PTPN13_uc003hqa.2_Missense_Mutation_p.G1527A|PTPN13_uc003hqb.2_Missense_Mutation_p.G1355A|PTPN13_uc003hqc.1_5'UTR	NM_080683	NP_542414	Q12923	PTN13_HUMAN	protein tyrosine phosphatase, non-receptor type	1546	PDZ 3.					cytoplasm|cytoskeleton|plasma membrane	protein binding|protein binding|protein tyrosine phosphatase activity			ovary(4)|breast(1)|kidney(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.242)		OV - Ovarian serous cystadenocarcinoma(123;0.00082)		GCAGAAAGTGGAAAAATTGAT	0.408000													7	98					0	0	0	0
SPOCK3	50859	broad.mit.edu	37	4	167658711	167658711	+	Missense_Mutation	SNP	T	A	A			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr4:167658711T>A	uc003iri.1	-	11	1189	c.1048A>T	c.(1048-1050)ACA>TCA	p.T350S	SPOCK3_uc011cjp.1_Missense_Mutation_p.T307S|SPOCK3_uc011cjq.1_Missense_Mutation_p.T359S|SPOCK3_uc011cjr.1_Missense_Mutation_p.T230S|SPOCK3_uc003irj.1_Missense_Mutation_p.T347S|SPOCK3_uc011cjs.1_Missense_Mutation_p.T299S|SPOCK3_uc011cjt.1_Missense_Mutation_p.T258S|SPOCK3_uc011cju.1_Missense_Mutation_p.T243S|SPOCK3_uc011cjv.1_Missense_Mutation_p.T252S	NM_016950	NP_058646	Q9BQ16	TICN3_HUMAN	testican 3 isoform 2	350	Thyroglobulin type-1.				signal transduction	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase inhibitor activity			large_intestine(1)|ovary(1)|central_nervous_system(1)	3	all_hematologic(180;0.221)	Prostate(90;0.0181)|Renal(120;0.0184)|Melanoma(52;0.0198)		GBM - Glioblastoma multiforme(119;0.02)		TGACATTGTGTTGGCTTGTAG	0.423000													32	109					0	0	0	0
GPM6A	2823	broad.mit.edu	37	4	176573064	176573064	+	Missense_Mutation	SNP	C	G	G			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr4:176573064C>G	uc003iuf.2	-	4	1266	c.462G>C	c.(460-462)ATG>ATC	p.M154I	GPM6A_uc011ckj.1_Missense_Mutation_p.M147I|GPM6A_uc003iug.2_Missense_Mutation_p.M154I|GPM6A_uc003iuh.2_Missense_Mutation_p.M143I	NM_201591	NP_963885	P51674	GPM6A_HUMAN	glycoprotein M6A isoform 2	154	Extracellular (Potential).					cell surface|integral to membrane					0		Breast(14;7.35e-05)|Melanoma(52;0.00909)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;9.21e-19)|Epithelial(43;3.01e-17)|OV - Ovarian serous cystadenocarcinoma(60;2.02e-09)|STAD - Stomach adenocarcinoma(60;0.00083)|GBM - Glioblastoma multiforme(59;0.00168)|LUSC - Lung squamous cell carcinoma(193;0.0388)		GATTGAAGTACATGTAAACTG	0.458000													3	49					0	0	0	0
ASB5	140458	broad.mit.edu	37	4	177190237	177190237	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr4:177190237C>T	uc003iuq.1	-	1	39	c.23G>A	c.(22-24)CGG>CAG	p.R8Q		NM_080874	NP_543150	Q8WWX0	ASB5_HUMAN	ankyrin repeat and SOCS box-containing protein	8					intracellular signal transduction					skin(2)	2		Breast(14;0.00015)|Melanoma(52;0.00886)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;2.13e-20)|Epithelial(43;9.94e-18)|OV - Ovarian serous cystadenocarcinoma(60;2e-09)|GBM - Glioblastoma multiforme(59;0.000254)|STAD - Stomach adenocarcinoma(60;0.000653)|LUSC - Lung squamous cell carcinoma(193;0.0393)		AGCAAACGGCCGATTTTCTTC	0.448000													8	53					0	0	0	0
SLC12A7	10723	broad.mit.edu	37	5	1057669	1057669	+	Missense_Mutation	SNP	C	A	A			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr5:1057669C>A	uc003jbu.2	-	22	3009	c.2943G>T	c.(2941-2943)TGG>TGT	p.W981C		NM_006598	NP_006589	Q9Y666	S12A7_HUMAN	solute carrier family 12 (potassium/chloride	981	Cytoplasmic (Potential).				potassium ion transport|sodium ion transport	integral to plasma membrane	potassium:chloride symporter activity			skin(2)|large_intestine(1)|ovary(1)	4	Lung NSC(6;2.47e-13)|all_lung(6;1.67e-12)|all_epithelial(6;5.44e-09)		Epithelial(17;0.000497)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|all cancers(22;0.00241)|Lung(60;0.165)		Potassium Chloride(DB00761)	TCTCCCTGGTCCAGGTCATCT	0.617000													11	204					1.58986e-06	1.7521e-06	1	0
DNAH5	1767	broad.mit.edu	37	5	13891111	13891111	+	Missense_Mutation	SNP	A	T	T			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr5:13891111A>T	uc003jfd.2	-	17	2593	c.2551T>A	c.(2551-2553)TGT>AGT	p.C851S		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	851	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					AACTCTTCACAGGTTAGTGGC	0.393000									Kartagener_syndrome				10	152					0	0	0	0
CDH10	1008	broad.mit.edu	37	5	24492957	24492957	+	Silent	SNP	G	C	C			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr5:24492957G>C	uc003jgr.1	-	10	1925	c.1593C>G	c.(1591-1593)GTC>GTG	p.V531V	CDH10_uc011cnu.1_RNA	NM_006727	NP_006718	Q9Y6N8	CAD10_HUMAN	cadherin 10, type 2 preproprotein	531	Cadherin 5.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|pancreas(4)|breast(2)	12				STAD - Stomach adenocarcinoma(35;0.0556)		AGTTTGGATTGACAGCAGCTA	0.333000										HNSCC(23;0.051)			7	197					0	0	0	0
NUP155	9631	broad.mit.edu	37	5	37331895	37331895	+	Silent	SNP	C	G	G			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr5:37331895C>G	uc003jku.1	-	14	1639	c.1521G>C	c.(1519-1521)GGG>GGC	p.G507G	NUP155_uc003jkt.1_Silent_p.G448G|NUP155_uc010iuz.1_Silent_p.G507G	NM_153485	NP_705618	O75694	NU155_HUMAN	nucleoporin 155kDa isoform 1	507					carbohydrate metabolic process|glucose transport|mRNA transport|nucleocytoplasmic transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	nuclear membrane|nuclear pore	protein binding|structural constituent of nuclear pore|transporter activity			ovary(1)	1	all_lung(31;0.000137)		COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			ACATAAGGCTCCCCTAAGAAA	0.343000													6	65					0	0	0	0
ACOT12	134526	broad.mit.edu	37	5	80667569	80667569	+	Missense_Mutation	SNP	C	A	A			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr5:80667569C>A	uc003khl.3	-	3	313	c.258G>T	c.(256-258)GAG>GAT	p.E86D	RNU5E_uc011cto.1_Intron|ACOT12_uc003khm.2_Missense_Mutation_p.E86D	NM_130767	NP_570123	Q8WYK0	ACO12_HUMAN	acyl-CoA thioesterase 12	86	Acyl coenzyme A hydrolase 1.				acyl-CoA metabolic process|fatty acid metabolic process	cytosol	acetyl-CoA hydrolase activity|carboxylesterase activity			ovary(1)|kidney(1)	2		Lung NSC(167;0.0176)|all_lung(232;0.0205)|Ovarian(174;0.135)		OV - Ovarian serous cystadenocarcinoma(54;1.37e-45)|Epithelial(54;1.25e-39)|all cancers(79;5.01e-34)		TGCCTCTTACCTCCATGCTTG	0.398000													19	52					1.9806e-07	2.21663e-07	1	0
APC	324	broad.mit.edu	37	5	112174376	112174376	+	Missense_Mutation	SNP	C	A	A			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr5:112174376C>A	uc010jby.2	+	16	3465	c.3085C>A	c.(3085-3087)CTT>ATT	p.L1029I	APC_uc011cvt.1_Missense_Mutation_p.L1011I|APC_uc003kpz.3_Missense_Mutation_p.L1029I|APC_uc003kpy.3_Missense_Mutation_p.L1029I|APC_uc010jbz.2_Missense_Mutation_p.L746I|APC_uc010jca.2_Missense_Mutation_p.L329I	NM_001127511	NP_001120983	P25054	APC_HUMAN	adenomatous polyposis coli	1029	Ser-rich.|Responsible for down-regulation through a process mediated by direct ubiquitination.				canonical Wnt receptor signaling pathway|cell adhesion|cell cycle arrest|cell migration|cellular component disassembly involved in apoptosis|cytokinesis after mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cyclin-dependent protein kinase activity|negative regulation of microtubule depolymerization|positive regulation of apoptosis|positive regulation of cell migration|positive regulation of pseudopodium assembly|protein complex assembly|regulation of attachment of spindle microtubules to kinetochore|response to DNA damage stimulus|tight junction assembly	adherens junction|APC-Axin-1-beta-catenin complex|Axin-APC-beta-catenin-GSK3B complex|beta-catenin destruction complex|centrosome|cytosol|kinetochore|lamellipodium|lateral plasma membrane|nucleus|ruffle membrane|tight junction	beta-catenin binding|gamma-catenin binding|microtubule plus-end binding|protein kinase binding|protein kinase regulator activity	p.?(1)		large_intestine(2123)|stomach(123)|soft_tissue(55)|small_intestine(34)|breast(26)|pancreas(25)|urinary_tract(20)|lung(19)|thyroid(18)|liver(13)|central_nervous_system(10)|ovary(9)|skin(7)|upper_aerodigestive_tract(6)|adrenal_gland(6)|bone(6)|NS(5)|prostate(4)|endometrium(3)|kidney(1)|oesophagus(1)|biliary_tract(1)	2515		all_cancers(142;3.01e-27)|all_epithelial(76;2.3e-18)|all_hematologic(541;4.32e-09)|Ovarian(225;1.78e-06)|Lung NSC(167;0.000195)|Breast(839;0.000231)|all_lung(232;0.000247)|Colorectal(10;0.000355)|Prostate(80;0.00133)		OV - Ovarian serous cystadenocarcinoma(64;1.09e-113)|Epithelial(69;3.79e-112)|all cancers(49;1.67e-104)|BRCA - Breast invasive adenocarcinoma(61;0.00136)|COAD - Colon adenocarcinoma(37;0.00155)|Colorectal(14;0.00191)		AAATTATAGTCTTAAATATTC	0.363000		12	D|Mis|N|F|S		colorectal|pancreatic|desmoid|hepatoblastoma|glioma|other CNS	colorectal|pancreatic|desmoid|hepatoblastoma|glioma|other CNS			Hereditary_Desmoid_Disease|Familial_Adenomatous_Polyposis|Turcot_syndrome	TSP Lung(16;0.13)			5	65					0.00116845	0.00120183	1	0
IL13	3596	broad.mit.edu	37	5	131993989	131993989	+	Silent	SNP	G	T	T			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr5:131993989G>T	uc003kxj.1	+	1	125	c.111G>T	c.(109-111)GTG>GTT	p.V37V		NM_002188	NP_002179	P35225	IL13_HUMAN	interleukin 13 precursor	37					cellular component movement|immune response|inflammatory response|signal transduction	extracellular space|soluble fraction	cytokine activity			ovary(1)|skin(1)	2		all_cancers(142;0.0751)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			CAGGCCCTGTGCCTCCCTCTA	0.592000													10	28					0.000442599	0.000459622	1	0
PCDHA6	56142	broad.mit.edu	37	5	140207691	140207691	+	Silent	SNP	G	A	A			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr5:140207691G>A	uc003lho.2	+	1	42	c.15G>A	c.(13-15)CCG>CCA	p.P5P	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Silent_p.P5P|PCDHA6_uc011dab.1_Silent_p.P5P	NM_018909	NP_061732	Q9UN73	PCDA6_HUMAN	protocadherin alpha 6 isoform 1 precursor	5					homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			haematopoietic_and_lymphoid_tissue(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGTTTACCCCGGAGGATAGAT	0.478000													20	121					0	0	0	0
LARP1	23367	broad.mit.edu	37	5	154179273	154179273	+	Silent	SNP	C	T	T			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr5:154179273C>T	uc003lvp.2	+	9	1929	c.1500C>T	c.(1498-1500)CTC>CTT	p.L500L	LARP1_uc003lvo.2_Silent_p.L423L|LARP1_uc010jie.1_Silent_p.L295L	NM_033551	NP_291029	Q6PKG0	LARP1_HUMAN	la related protein isoform 2	500							protein binding|RNA binding			ovary(2)|pancreas(1)|skin(1)	4	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.147)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			CCCAGCTTCTCAACTGCCCTG	0.502000													9	88					0	0	0	0
PRPH2	5961	broad.mit.edu	37	6	42689520	42689520	+	Silent	SNP	G	A	A			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr6:42689520G>A	uc003osk.2	-	1	839	c.553C>T	c.(553-555)CTG>TTG	p.L185L		NM_000322	NP_000313	P23942	PRPH2_HUMAN	peripherin 2	185	Lumenal (Potential).		L -> P (in RP7; in combination with a null mutation of ROM1).		cell adhesion|visual perception	integral to membrane				ovary(4)|central_nervous_system(1)	5	Colorectal(47;0.196)		Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)|all cancers(41;0.00178)|KIRC - Kidney renal clear cell carcinoma(15;0.02)|Kidney(15;0.0388)|OV - Ovarian serous cystadenocarcinoma(102;0.0904)			GAAAAGTCCAGGTAGCGATTG	0.502000													24	141					0	0	0	0
AARS2	57505	broad.mit.edu	37	6	44279951	44279951	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr6:44279951C>T	uc010jza.1	-	2	296	c.293G>A	c.(292-294)GGC>GAC	p.G98D	SPATS1_uc003oxg.2_Intron	NM_020745	NP_065796	Q5JTZ9	SYAM_HUMAN	alanyl-tRNA synthetase 2, mitochondrial	98					alanyl-tRNA aminoacylation	mitochondrion	alanine-tRNA ligase activity|ATP binding|metal ion binding|tRNA binding			ovary(1)	1	Hepatocellular(11;0.00908)|all_lung(25;0.0101)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)		L-Alanine(DB00160)	ACGTCGGAAGCCTGCCATCTC	0.527000													13	56					0	0	0	0
DDX43	55510	broad.mit.edu	37	6	74104706	74104707	+	Missense_Mutation	DNP	GC	TA	TA			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr6:74104706_74104707GC>TA	uc003pgw.2	+	1	422_423	c.78_79GC>TA	c.(76-81)GCGCCA>GCTACA	p.P27T	OOEP_uc003pgv.3_5'UTR|DDX43_uc011dyn.1_RNA	NM_018665	NP_061135	Q9NXZ2	DDX43_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 43	27						intracellular	ATP binding|ATP-dependent RNA helicase activity|RNA binding			ovary(2)|upper_aerodigestive_tract(1)|skin(1)	4						TGTCCCGAGCGCCAGAGAGGAG	0.644000													13	73					0	0	0	0
GOPC	57120	broad.mit.edu	37	6	117896462	117896462	+	Silent	SNP	T	C	C			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr6:117896462T>C	uc003pxu.2	-	4	758	c.528A>G	c.(526-528)GAA>GAG	p.E176E	GOPC_uc003pxq.1_5'Flank|GOPC_uc003pxv.2_Silent_p.E168E	NM_020399	NP_065132	Q9HD26	GOPC_HUMAN	golgi associated PDZ and coiled-coil motif	176	Potential.				apical protein localization|cytoplasmic sequestering of CFTR protein|ER to Golgi vesicle-mediated transport|Golgi to plasma membrane transport|protein homooligomerization|protein transport	cell junction|dendrite|Golgi membrane|postsynaptic density|postsynaptic membrane|trans-Golgi network transport vesicle	cystic fibrosis transmembrane conductance regulator binding			ovary(1)	1		all_cancers(87;0.00844)|all_epithelial(87;0.0242)		GBM - Glioblastoma multiforme(226;0.0363)|OV - Ovarian serous cystadenocarcinoma(136;0.0821)|all cancers(137;0.0976)		TCACTTCAGCTTCAAGTTGTG	0.348000			O	ROS1	glioblastoma								6	34					0	0	0	0
SMPDL3A	10924	broad.mit.edu	37	6	123124975	123124975	+	Missense_Mutation	SNP	G	C	C			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr6:123124975G>C	uc003pzg.2	+	5	1256	c.735G>C	c.(733-735)GAG>GAC	p.E245D	SMPDL3A_uc003pzh.2_Missense_Mutation_p.E114D	NM_006714	NP_006705	Q92484	ASM3A_HUMAN	acid sphingomyelinase-like phosphodiesterase 3A	245					sphingomyelin catabolic process	extracellular space	hydrolase activity, acting on glycosyl bonds|protein binding|sphingomyelin phosphodiesterase activity				0				GBM - Glioblastoma multiforme(226;0.236)		AGAATAAGGAGAAGGTAGATC	0.393000													15	74					0	0	0	0
AMZ1	155185	broad.mit.edu	37	7	2740214	2740214	+	Missense_Mutation	SNP	C	A	A			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr7:2740214C>A	uc003smr.1	+	2	490	c.129C>A	c.(127-129)TTC>TTA	p.F43L	AMZ1_uc003sms.1_Missense_Mutation_p.F43L|AMZ1_uc011jwa.1_5'Flank	NM_133463	NP_597720	Q400G9	AMZ1_HUMAN	archaelysin family metallopeptidase 1	43							metallopeptidase activity|zinc ion binding				0		Ovarian(82;0.0779)		OV - Ovarian serous cystadenocarcinoma(56;5.03e-14)		AGCGGCTCTTCCTGGCCGAGG	0.672000													16	182					1.02788e-11	1.18097e-11	1	0
DGKB	1607	broad.mit.edu	37	7	14378214	14378214	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr7:14378214C>T	uc003ssz.2	-	22	2238	c.2051G>A	c.(2050-2052)CGA>CAA	p.R684Q	DGKB_uc011jxt.1_Missense_Mutation_p.R665Q|DGKB_uc003sta.2_Missense_Mutation_p.R684Q|DGKB_uc011jxu.1_Missense_Mutation_p.R683Q	NM_004080	NP_004071	Q9Y6T7	DGKB_HUMAN	diacylglycerol kinase, beta isoform 1	684					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	cytoplasm|plasma membrane	ATP binding|calcium ion binding|diacylglycerol kinase activity|protein binding			lung(5)|ovary(4)|breast(2)|skin(1)	12					Phosphatidylserine(DB00144)	CTCTATTCGTCGATGGCTTCG	0.393000													4	89					0	0	0	0
RAPGEF5	9771	broad.mit.edu	37	7	22202079	22202079	+	Missense_Mutation	SNP	G	T	T			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr7:22202079G>T	uc003svg.2	-	13	1218	c.905C>A	c.(904-906)TCC>TAC	p.S302Y	RAPGEF5_uc011jyl.1_5'UTR	NM_012294	NP_036426	Q92565	RPGF5_HUMAN	Rap guanine nucleotide exchange factor (GEF) 5	152	N-terminal Ras-GEF.				nervous system development|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	nucleus	GTP-dependent protein binding|Rap guanyl-nucleotide exchange factor activity			ovary(1)	1						AATCCACTGGGAAACAAGATG	0.368000													4	63					2.56e-06	2.79273e-06	1	0
TYW1B	441250	broad.mit.edu	37	7	72159743	72159743	+	Silent	SNP	G	A	A			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr7:72159743G>A	uc011kej.1	-	14	1599	c.1440C>T	c.(1438-1440)ATC>ATT	p.I480I	TYW1B_uc011keh.1_Silent_p.I318I|TYW1B_uc011kei.1_Silent_p.I106I	NM_001145440	NP_001138912	Q6NUM6	TYW1B_HUMAN	tRNA-yW synthesizing protein 1 homolog B isoform	480					tRNA processing		4 iron, 4 sulfur cluster binding|FMN binding|iron ion binding|oxidoreductase activity				0						GTGGGCGGTCGATTTTCTTCA	0.388000													8	68					0	0	0	0
PEX1	5189	broad.mit.edu	37	7	92138667	92138667	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr7:92138667G>A	uc003uly.2	-	9	1742	c.1646C>T	c.(1645-1647)CCT>CTT	p.P549L	PEX1_uc011khr.1_Missense_Mutation_p.P341L|PEX1_uc010ley.2_Missense_Mutation_p.P549L|PEX1_uc011khs.1_Missense_Mutation_p.P227L|PEX1_uc011kht.1_Intron	NM_000466	NP_000457	O43933	PEX1_HUMAN	peroxin1	549					microtubule-based peroxisome localization|protein import into peroxisome matrix	cytosol|nucleus|peroxisomal membrane	ATP binding|ATPase activity, coupled|protein C-terminus binding|protein complex binding			ovary(1)|central_nervous_system(1)	2	all_cancers(62;9.35e-11)|all_epithelial(64;4.59e-10)|Breast(17;0.00201)|all_lung(186;0.0438)|Lung NSC(181;0.0592)	Breast(660;0.000932)|all_neural(109;0.00391)|Myeloproliferative disorder(862;0.0122)|Ovarian(593;0.023)|Medulloblastoma(109;0.123)	GBM - Glioblastoma multiforme(5;4.06e-06)|STAD - Stomach adenocarcinoma(4;4.51e-05)|all cancers(6;5.32e-05)|LUSC - Lung squamous cell carcinoma(200;0.225)|Lung(22;0.23)			CTTTAAAAAAGGAAGAATAAA	0.333000													9	45					0	0	0	0
MUC17	140453	broad.mit.edu	37	7	100684155	100684155	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr7:100684155G>A	uc003uxp.1	+	3	9511	c.9458G>A	c.(9457-9459)AGC>AAC	p.S3153N	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	3153	Extracellular (Potential).|Ser-rich.|59 X approximate tandem repeats.|51.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					GAAGGTACCAGCATGCCAACC	0.478000													108	208					0	0	0	0
KCND2	3751	broad.mit.edu	37	7	120385968	120385968	+	Missense_Mutation	SNP	C	G	G			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr7:120385968C>G	uc003vjj.1	+	5	2567	c.1602C>G	c.(1600-1602)CAC>CAG	p.H534Q		NM_012281	NP_036413	Q9NZV8	KCND2_HUMAN	potassium voltage-gated channel, Shal-related	534	Cytoplasmic (Potential).				regulation of action potential|synaptic transmission	cell surface|dendritic spine	metal ion binding			ovary(2)|central_nervous_system(2)|skin(1)	5	all_neural(327;0.117)					CACGACGACACAAAAAAACTT	0.448000													7	55					0	0	0	0
TRY6	154754	broad.mit.edu	37	7	142481807	142481807	+	Silent	SNP	C	T	T	rs4726591	by1000genomes	TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr7:142481807C>T	uc011ksq.1	+	4	569	c.486C>T	c.(484-486)GAC>GAT	p.D162D	uc003vzp.2_Intron|uc011ksh.1_Intron|uc011ksi.1_Intron|uc003vzw.1_Intron|uc010loj.1_Intron|uc003wad.2_Intron|uc003wag.1_Intron|uc003wan.1_Intron	NR_001296				SubName: Full=Protease, serine, 3; Flags: Fragment;												0						AGTGCCTGGACGCTCCTGTGC	0.502000													3	31					0	0	0	0
RP1L1	94137	broad.mit.edu	37	8	10469745	10469745	+	Silent	SNP	C	T	T			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr8:10469745C>T	uc003wtc.2	-	4	2092	c.1863G>A	c.(1861-1863)TCG>TCA	p.S621S		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	621					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		AGGCTCCTTCCGAGTCCCAGG	0.647000													5	64					0	0	0	0
ADAM7	8756	broad.mit.edu	37	8	24324479	24324479	+	Missense_Mutation	SNP	C	G	G			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr8:24324479C>G	uc003xeb.2	+	6	670	c.557C>G	c.(556-558)TCT>TGT	p.S186C	ADAM7_uc003xea.1_Missense_Mutation_p.S186C	NM_003817	NP_003808	Q9H2U9	ADAM7_HUMAN	a disintegrin and metalloproteinase domain 7	186	Extracellular (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(1)|kidney(1)	5		Prostate(55;0.0181)		Colorectal(74;0.0199)|COAD - Colon adenocarcinoma(73;0.0754)|BRCA - Breast invasive adenocarcinoma(99;0.182)		GATAATGAATCTGAAGAAGAC	0.348000													12	84					0	0	0	0
STAR	6770	broad.mit.edu	37	8	38003513	38003513	+	Silent	SNP	G	A	A			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr8:38003513G>A	uc003xkv.1	-	6	828	c.564C>T	c.(562-564)TTC>TTT	p.F188F	STAR_uc010lwc.1_Silent_p.F168F	NM_001007243	NP_001007244	P49675	STAR_HUMAN	steroidogenic acute regulatory protein isoform	206	START.				C21-steroid hormone biosynthetic process	mitochondrial intermembrane space	cholesterol transporter activity			ovary(1)	1	Colorectal(12;0.000442)	all_lung(54;0.0151)|Lung NSC(58;0.0295)		READ - Rectum adenocarcinoma(644;0.188)		GCATGTTCCCGAAGTCTGTGG	0.617000													6	128					0	0	0	0
ADAM2	2515	broad.mit.edu	37	8	39626980	39626980	+	Missense_Mutation	SNP	G	C	C			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr8:39626980G>C	uc003xnj.2	-	12	1218	c.1143C>G	c.(1141-1143)TTC>TTG	p.F381L	ADAM2_uc003xnk.2_Missense_Mutation_p.F362L|ADAM2_uc011lck.1_Missense_Mutation_p.F381L|ADAM2_uc003xnl.2_Missense_Mutation_p.F255L	NM_001464	NP_001455	Q99965	ADAM2_HUMAN	ADAM metallopeptidase domain 2 proprotein	381	Extracellular (Potential).				cell adhesion|fusion of sperm to egg plasma membrane|proteolysis	integral to plasma membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|lung(1)	2		all_cancers(7;2.38e-28)|all_epithelial(6;8.85e-21)|all_lung(54;1.24e-07)|Lung NSC(58;1.94e-07)|Hepatocellular(245;0.00745)|Breast(189;0.00908)|Renal(179;0.0183)|Colorectal(162;0.246)	LUSC - Lung squamous cell carcinoma(45;0.000149)	READ - Rectum adenocarcinoma(644;0.0689)|Kidney(114;0.162)		CTTGCTGTTTGAAAAAAGGAT	0.443000													3	52					0	0	0	0
HOOK3	84376	broad.mit.edu	37	8	42821703	42821703	+	Silent	SNP	G	C	C			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr8:42821703G>C	uc003xpr.2	+	10	1109	c.867G>C	c.(865-867)CTG>CTC	p.L289L	HOOK3_uc010lxq.1_Silent_p.L289L	NM_032410	NP_115786	Q86VS8	HOOK3_HUMAN	golgi-associated microtubule-binding protein	289	Potential.				cytoplasmic microtubule organization|early endosome to late endosome transport|endosome organization|endosome to lysosome transport|Golgi localization|interkinetic nuclear migration|lysosome organization|microtubule anchoring|negative regulation of neurogenesis|protein localization to centrosome|protein transport	cis-Golgi network|FHF complex|microtubule|pericentriolar material	identical protein binding|microtubule binding			ovary(1)|breast(1)	2	Ovarian(28;0.01)|Prostate(17;0.0119)|Lung SC(25;0.184)	all_lung(54;0.000105)|Lung NSC(58;0.000419)|Hepatocellular(245;0.0524)|Renal(179;0.0822)|Esophageal squamous(32;0.129)	Lung(22;0.048)|LUSC - Lung squamous cell carcinoma(45;0.114)			ATGATGAACTGACCACTTTGG	0.448000			T	RET	papillary thyroid								4	89					0	0	0	0
PRKDC	5591	broad.mit.edu	37	8	48801649	48801649	+	Silent	SNP	C	A	A			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr8:48801649C>A	uc003xqi.2	-	34	4263	c.4206G>T	c.(4204-4206)CTG>CTT	p.L1402L	PRKDC_uc003xqj.2_Silent_p.L1402L|PRKDC_uc011ldh.1_Intron	NM_006904	NP_008835	P78527	PRKDC_HUMAN	protein kinase, DNA-activated, catalytic	1402					cellular response to insulin stimulus|double-strand break repair via nonhomologous end joining|peptidyl-serine phosphorylation|positive regulation of transcription from RNA polymerase II promoter	DNA-dependent protein kinase-DNA ligase 4 complex|transcription factor complex	ATP binding|DNA binding|DNA-dependent protein kinase activity|transcription factor binding			lung(12)|central_nervous_system(9)|ovary(6)|skin(4)|large_intestine(3)	34		all_cancers(86;0.0336)|all_epithelial(80;0.00111)|Lung NSC(129;0.00363)|all_lung(136;0.00391)				GAGCTTTCATCAGATTCACAC	0.483000								NHEJ					6	60					0.00116845	0.00120183	1	0
MCM4	4173	broad.mit.edu	37	8	48882491	48882491	+	Silent	SNP	A	C	C			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr8:48882491A>C	uc003xqk.1	+	11	1403	c.1308A>C	c.(1306-1308)GCA>GCC	p.A436A	MCM4_uc003xql.1_Silent_p.A436A|MCM4_uc011ldi.1_Silent_p.A423A	NM_182746	NP_877423	P33991	MCM4_HUMAN	minichromosome maintenance complex component 4	436					cell cycle checkpoint|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle	MCM complex	ATP binding|DNA binding|helicase activity|protein binding			ovary(2)|skin(2)	4		all_cancers(86;0.026)|all_epithelial(80;0.000748)|Lung NSC(129;0.00327)|all_lung(136;0.00354)				ATGAAGAAGCAGAACAGAAAC	0.423000													29	115					0	0	0	0
RP1	6101	broad.mit.edu	37	8	55541982	55541982	+	Missense_Mutation	SNP	T	C	C			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr8:55541982T>C	uc003xsd.1	+	4	5688	c.5540T>C	c.(5539-5541)ATA>ACA	p.I1847T	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	1847					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			AAGGAAAGAATAGCAAATCAT	0.408000													18	43					0	0	0	0
MATN2	4147	broad.mit.edu	37	8	99006720	99006720	+	Missense_Mutation	SNP	G	T	T			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr8:99006720G>T	uc003yic.2	+	7	1325	c.1094G>T	c.(1093-1095)TGT>TTT	p.C365F	MATN2_uc003yib.1_Missense_Mutation_p.C365F|MATN2_uc010mbh.1_Intron|MATN2_uc003yid.2_Missense_Mutation_p.C365F|MATN2_uc003yie.1_Missense_Mutation_p.C365F|MATN2_uc010mbi.1_Missense_Mutation_p.C198F	NM_002380	NP_002371	O00339	MATN2_HUMAN	matrilin 2 isoform a precursor	365	EGF-like 4.					proteinaceous extracellular matrix	calcium ion binding			ovary(2)	2	Breast(36;1.43e-06)		OV - Ovarian serous cystadenocarcinoma(57;0.244)			ATAGACTACTGTGCCTCATCT	0.423000													45	157					1.02067e-35	1.1917e-35	1	0
COL14A1	7373	broad.mit.edu	37	8	121216036	121216036	+	Silent	SNP	G	A	A			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr8:121216036G>A	uc003yox.2	+	9	1231	c.966G>A	c.(964-966)CTG>CTA	p.L322L	COL14A1_uc003yoy.2_5'UTR|COL14A1_uc010mde.1_5'UTR	NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor	322	VWFA 1.				cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			AATTCGATCTGATGCACACAG	0.483000													4	42					0	0	0	0
ZNF623	9831	broad.mit.edu	37	8	144732947	144732947	+	Missense_Mutation	SNP	A	T	T			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr8:144732947A>T	uc003yzd.2	+	1	994	c.905A>T	c.(904-906)CAT>CTT	p.H302L	ZNF623_uc011lkp.1_Missense_Mutation_p.H262L|ZNF623_uc003yzc.2_Missense_Mutation_p.H262L	NM_014789	NP_055604	O75123	ZN623_HUMAN	zinc finger protein 623 isoform 1	302	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(97;3.74e-11)|all_epithelial(106;2.62e-09)|Lung NSC(106;0.00013)|all_lung(105;0.000374)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;5.28e-40)|all cancers(56;5.23e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.146)			GCATTCCGTCATCGCTCAGAC	0.453000													13	47					0	0	0	0
CPSF1	29894	broad.mit.edu	37	8	145621932	145621932	+	Nonsense_Mutation	SNP	C	A	A			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr8:145621932C>A	uc003zcj.2	-	25	2782	c.2707G>T	c.(2707-2709)GAG>TAG	p.E903*		NM_013291	NP_037423	Q10570	CPSF1_HUMAN	cleavage and polyadenylation specific factor 1,	903	Nuclear localization signal (Potential).				mRNA cleavage|mRNA export from nucleus|mRNA polyadenylation|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	mRNA cleavage and polyadenylation specificity factor complex	mRNA 3'-UTR binding|protein binding			skin(1)	1	all_cancers(97;6.64e-12)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.88e-41)|Epithelial(56;1.67e-40)|all cancers(56;1.2e-35)|BRCA - Breast invasive adenocarcinoma(115;0.0323)|Colorectal(110;0.055)			GGCTTCTTCTCACGGAAGTTG	0.642000													33	99					8.16277e-20	9.42866e-20	1	0
ELAVL2	1993	broad.mit.edu	37	9	23731115	23731115	+	Missense_Mutation	SNP	A	T	T			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr9:23731115A>T	uc003zpu.2	-	3	513	c.238T>A	c.(238-240)TTG>ATG	p.L80M	ELAVL2_uc003zps.2_Missense_Mutation_p.L80M|ELAVL2_uc003zpt.2_Missense_Mutation_p.L80M|ELAVL2_uc003zpv.2_Missense_Mutation_p.L80M|ELAVL2_uc003zpw.2_Missense_Mutation_p.L80M	NM_004432	NP_004423	Q12926	ELAV2_HUMAN	ELAV (embryonic lethal, abnormal vision,	80	RRM 1.				regulation of transcription, DNA-dependent		mRNA 3'-UTR binding|nucleotide binding|protein binding			ovary(2)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(1;2.18e-156)|Lung(42;2.15e-28)|LUSC - Lung squamous cell carcinoma(38;1.02e-19)		CCATATCCCAAGCTCTGCCCT	0.383000													8	18					0	0	0	0
FRMPD1	22844	broad.mit.edu	37	9	37735705	37735705	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr9:37735705G>A	uc004aag.1	+	13	1419	c.1375G>A	c.(1375-1377)GTC>ATC	p.V459I	FRMPD1_uc004aah.1_Missense_Mutation_p.V459I|FRMPD1_uc011lqm.1_Missense_Mutation_p.V281I|FRMPD1_uc011lqn.1_Missense_Mutation_p.V328I	NM_014907	NP_055722	Q5SYB0	FRPD1_HUMAN	FERM and PDZ domain containing 1	459	FERM.					cytoskeleton|cytosol|plasma membrane				ovary(4)|central_nervous_system(2)|skin(2)|breast(1)	9				GBM - Glioblastoma multiforme(29;0.00655)		AGTGAGCGTCGTCAAAGTGTA	0.453000													7	29					0	0	0	0
KIAA0368	23392	broad.mit.edu	37	9	114173379	114173379	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr9:114173379G>A	uc004bfe.1	-	23	2792	c.2792C>T	c.(2791-2793)ACG>ATG	p.T931M		NM_001080398	NP_001073867			KIAA0368 protein												0						CCTTCCCACCGTGAATCCCAA	0.438000													5	196					0	0	0	0
AMBP	259	broad.mit.edu	37	9	116823281	116823281	+	Silent	SNP	G	A	A			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr9:116823281G>A	uc004bie.3	-	9	1214	c.951C>T	c.(949-951)TAC>TAT	p.Y317Y	AMBP_uc011lxk.1_3'UTR	NM_001633	NP_001624	P02760	AMBP_HUMAN	alpha-1-microglobulin/bikunin preproprotein	317	BPTI/Kunitz inhibitor 2.				cell adhesion|female pregnancy|heme catabolic process|interspecies interaction between organisms|negative regulation of immune response|negative regulation of JNK cascade|protein-chromophore linkage	extracellular region|plasma membrane	calcium channel inhibitor activity|calcium oxalate binding|heme binding|IgA binding|protein homodimerization activity|serine-type endopeptidase inhibitor activity|transporter activity			skin(1)	1					Human Serum Albumin(DB00062)|Serum albumin iodonated(DB00064)	GGCAGCCCCCGTAGGGGAAGA	0.622000													6	105					0	0	0	0
IL1RAPL1	11141	broad.mit.edu	37	X	29417365	29417365	+	Missense_Mutation	SNP	A	G	G			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chrX:29417365A>G	uc004dby.2	+	5	1151	c.643A>G	c.(643-645)ACC>GCC	p.T215A		NM_014271	NP_055086	Q9NZN1	IRPL1_HUMAN	interleukin 1 receptor accessory protein-like 1	215	Ig-like C2-type 2.|Extracellular (Potential).				innate immune response|negative regulation of calcium ion transport via voltage-gated calcium channel activity|negative regulation of exocytosis|regulation of neuron projection development	cytoplasm|integral to membrane|plasma membrane	protein binding|transmembrane receptor activity			ovary(3)|lung(1)|pancreas(1)	5						TGGAAATTATACCTGTGAATT	0.343000													8	28					0	0	0	0
FAM47A	158724	broad.mit.edu	37	X	34148157	34148157	+	Missense_Mutation	SNP	C	A	A			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chrX:34148157C>A	uc004ddg.2	-	1	2272	c.2239G>T	c.(2239-2241)GGC>TGC	p.G747C		NM_203408	NP_981953	Q5JRC9	FA47A_HUMAN	hypothetical protein LOC158724	747										ovary(4)|central_nervous_system(1)	5						ATTTCATAGCCCTTGCTTAGA	0.408000													14	68					4.3838e-07	4.8559e-07	1	0
IL1RAPL2	26280	broad.mit.edu	37	X	105011054	105011054	+	Silent	SNP	C	T	T			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chrX:105011054C>T	uc004elz.1	+	11	2217	c.1461C>T	c.(1459-1461)TTC>TTT	p.F487F		NM_017416	NP_059112	Q9NP60	IRPL2_HUMAN	interleukin 1 receptor accessory protein-like 2	487	Cytoplasmic (Potential).|TIR.				central nervous system development|innate immune response	integral to membrane	interleukin-1, Type II, blocking receptor activity			breast(2)|ovary(1)	3						GGAGTATTTTCGAACTGGAAA	0.388000													10	41					0	0	0	0
MUM1L1	139221	broad.mit.edu	37	X	105450642	105450642	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chrX:105450642G>A	uc004emf.1	+	4	1866	c.1217G>A	c.(1216-1218)TGG>TAG	p.W406*	MUM1L1_uc004emg.1_Nonsense_Mutation_p.W406*	NM_152423	NP_689636	Q5H9M0	MUML1_HUMAN	melanoma associated antigen (mutated) 1-like 1	406	PWWP.									ovary(2)|pancreas(1)|skin(1)	4						TATCCATTTTGGCCAGCAGTG	0.368000													4	4					0	0	0	0
DOCK11	139818	broad.mit.edu	37	X	117775257	117775257	+	Nonsense_Mutation	SNP	C	T	T			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chrX:117775257C>T	uc004eqp.2	+	39	4312	c.4249C>T	c.(4249-4251)CAG>TAG	p.Q1417*	DOCK11_uc004eqq.2_Nonsense_Mutation_p.Q1196*	NM_144658	NP_653259	Q5JSL3	DOC11_HUMAN	dedicator of cytokinesis 11	1417					blood coagulation	cytosol	GTP binding			ovary(3)	3						ATTTTTCACTCAGTGCTTCAA	0.323000													6	36					0	0	0	0
ZNF75D	7626	broad.mit.edu	37	X	134421749	134421749	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chrX:134421749C>T	uc004eyp.2	-	7	3508	c.853G>A	c.(853-855)GAT>AAT	p.D285N	ZNF75D_uc004eym.2_Intron|ZNF75D_uc004eyn.2_Missense_Mutation_p.D64N|ZNF75D_uc004eyo.2_Missense_Mutation_p.D190N	NM_007131	NP_009062	P51815	ZN75D_HUMAN	zinc finger protein 75	285	KRAB.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						ATAGGATGATCATTTCCAGTG	0.363000													4	38					0	0	0	0
GBP3	2635	broad.mit.edu	37	1	89476691	89476693	+	In_Frame_Del	DEL	CTT	-	-			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr1:89476691_89476693delCTT	uc001dmt.2	-	8	1461_1463	c.1256_1258delAAG	c.(1255-1260)GAAGTG>GTG	p.E419del	GBP3_uc010oss.1_In_Frame_Del_p.E340del|GBP3_uc001dmu.2_In_Frame_Del_p.E285del|GBP3_uc001dmv.2_Intron	NM_018284	NP_060754	Q9H0R5	GBP3_HUMAN	guanylate binding protein 3	419						integral to membrane	GTP binding|GTPase activity			ovary(1)|pancreas(1)	2		Lung NSC(277;0.123)		all cancers(265;0.0103)|Epithelial(280;0.0293)		CCCGCCTTCACTTCTTCTTCTAG	0.419													---	---	---							
OR4S2	219431	broad.mit.edu	37	11	55418983	55419001	+	Frame_Shift_Del	DEL	GGTACCATTGCTCTGGGGA	-	-	rs139625934	byFrequency	TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr11:55418983_55419001delGGTACCATTGCTCTGGGGA	uc001nhs.1	+	1	604_622	c.604_622delGGTACCATTGCTCTGGGGA	c.(604-624)GGTACCATTGCTCTGGGGAGTfs	p.G202fs		NM_001004059	NP_001004059	Q8NH73	OR4S2_HUMAN	olfactory receptor, family 4, subfamily S,	202_208	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3		all_epithelial(135;0.0748)				AGCCAACAGTGGTACCATTGCTCTGGGGAGTTTTGTTAT	0.475													---	---	---							
SMG1	23049	broad.mit.edu	37	16	18840818	18840819	+	Frame_Shift_Del	DEL	TT	-	-			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr16:18840818_18840819delTT	uc002dfm.2	-	54	9755_9756	c.9392_9393delAA	c.(9391-9393)AAAfs	p.K3131fs	SMG1_uc010bwb.2_Frame_Shift_Del_p.K2991fs|SMG1_uc010bwa.2_Frame_Shift_Del_p.K1862fs	NM_015092	NP_055907	Q96Q15	SMG1_HUMAN	PI-3-kinase-related kinase SMG-1	3131					DNA repair|mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|peptidyl-serine phosphorylation|phosphatidylinositol phosphorylation|protein autophosphorylation	cytoplasm|nucleus	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			breast(5)|stomach(4)|lung(4)|kidney(2)|ovary(1)	16						CAACAGAAACTTTGCTTTCGGC	0.465													---	---	---							
Unknown	0	broad.mit.edu	37	2	85143007	85143007	+	IGR	DEL	C	-	-			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr2:85143007delC								TMSB10 (9208 upstream) : KCMF1 (55224 downstream)																							GCAGTGGCATCCGGGGCCGGG	0.711													---	---	---							
Unknown	0	broad.mit.edu	37	21	11180761	11180762	+	IGR	INS	-	T	T	rs146228438		TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr21:11180761_11180762insT								BAGE (81824 upstream) : None (None downstream)																							aaACTAACTTCTTTTTTTTTTT	0.168													---	---	---							
Unknown	0	broad.mit.edu	37	22	19618654	19618654	+	IGR	DEL	T	-	-			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr22:19618654delT								LOC150185 (64292 upstream) : SEPT5 (83333 downstream)																							AGTCCATCCCttttttttttt	0.204													---	---	---							
Unknown	0	broad.mit.edu	37	3	187141216	187141216	+	IGR	DEL	A	-	-	rs80024997		TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr3:187141216delA								RTP4 (51849 upstream) : SST (245480 downstream)																							cctgaaaaggaaaaaaaaagg	0.000													---	---	---							
Unknown	0	broad.mit.edu	37	3	195724503	195724505	+	IGR	DEL	GAA	-	-			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr3:195724503_195724505delGAA								SDHAP1 (7353 upstream) : TFRC (51651 downstream)																							agaagaggatgaagaagatgaag	0.355													---	---	---							
SUN1	23353	broad.mit.edu	37	7	883110	883110	+	Frame_Shift_Del	DEL	C	-	-			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr7:883110delC	uc011jvp.1	+	6	690	c.611delC	c.(610-612)GCCfs	p.A204fs	SUN1_uc010ksa.1_Frame_Shift_Del_p.A225fs|SUN1_uc003sje.1_Frame_Shift_Del_p.A204fs|SUN1_uc003sjf.2_Frame_Shift_Del_p.A154fs|SUN1_uc011jvq.1_Intron|SUN1_uc003sjg.2_Frame_Shift_Del_p.A15fs	NM_001130965	NP_001124437	O94901	SUN1_HUMAN	unc-84 homolog A isoform a	204	Nuclear.			A -> P (in Ref. 5; AAH13613).	cytoskeletal anchoring at nuclear membrane|nuclear matrix anchoring at nuclear membrane	integral to membrane|nuclear inner membrane|SUN-KASH complex	protein binding				0						CACCCCGCGGCCCCCGGGCCC	0.557													---	---	---							
Unknown	0	broad.mit.edu	37	7	64975077	64975078	+	IGR	INS	-	AGAC	AGAC			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr7:64975077_64975078insAGAC								ZNF92 (109080 upstream) : INTS4L2 (137699 downstream)																							AGTGCACCCGAAAACAAAGATG	0.455													---	---	---							
C9orf150	286343	broad.mit.edu	37	9	12775861	12775862	+	In_Frame_Ins	INS	-	GGCGGCGGC	GGCGGCGGC	rs139315731	by1000genomes	TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chr9:12775861_12775862insGGCGGCGGC	uc003zkw.2	+	1	850_851	c.147_148insGGCGGCGGC	c.(145-150)insGGCGGCGGC	p.55_56insGGG		NM_203403	NP_981948	Q8IV03	CI150_HUMAN	hypothetical protein LOC286343	58_59	Gly-rich.										0				GBM - Glioblastoma multiforme(1;1.64e-13)		gcggtggtggtggcggcggcgg	0.505													---	---	---							
Unknown	0	broad.mit.edu	37	X	155215015	155215028	+	IGR	DEL	TTACTTAGCTCTAT	-	-			TCGA-CN-6020-01A-11D-1683-08	TCGA-CN-6020-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f33c4c7-4f08-44a2-91f5-7ed2d7da68f0	6cfc6be3-b8b6-4934-aa2f-7d2e7fd53ec2	g.chrX:155215015_155215028delTTACTTAGCTCTAT								VAMP7 (41583 upstream) : IL9R (12218 downstream)																							TTAGCTCTACTTACTTAGCTCTATCTCTTCCTGG	0.449													---	---	---							
