Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ACTL6B	0	genome.wustl.edu	37	7	100244424	100244424	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	7	100244424	100244424	C	G	SNP	ACTL6B	NM_016188.4	human	genbank	58_37c	-1	reviewed	missense	c.967	p.G323R	1.000	HMMPfam_Actin,HMMSmart_ACTIN,superfamily_SSF53067	HMMPfam_Actin,HMMSmart_ACTIN,PatternScan_ACTINS_2,superfamily_SSF53067	-	no_errors
ADAMTS7	0	genome.wustl.edu	37	15	79058631	79058631	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	15	79058631	79058631	G	T	SNP	ADAMTS7	NM_014272.3	human	genbank	58_37c	-1	reviewed	missense	c.3622	p.P1208T	0.001	NULL	"HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMPfam_Reprolysin,HMMPfam_Pep_M12B_propep,HMMPfam_ADAM_spacer1,superfamily_Metalloproteases (""zincins"") catalytic domain"	-	no_errors
AMBRA1	0	genome.wustl.edu	37	11	46419045	46419045	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	11	46419045	46419045	G	A	SNP	AMBRA1	NM_017749.2	human	genbank	58_37c	-1	validated	silent	c.3582	p.S1194	0.994	NULL	HMMSmart_WD40,superfamily_WD40_like,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
AOAH	0	genome.wustl.edu	37	7	36552787	36552788	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	7	36552787	36552788	-	G	INS	AOAH	ENST00000431169	human	ensembl	58_37c	-1	known	frame_shift_ins	c.1918_1917	p.Y639fs	0.000:0.000	NULL	HMMPfam_Lipase_GDSL,HMMPfam_SapB_2,HMMSmart_SM00741,superfamily_Saposin,PatternScan_EGF_1	-	no_errors
ATXN7	0	genome.wustl.edu	37	3	63981414	63981414	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	3	63981414	63981414	G	C	SNP	ATXN7	NM_001128149.2	human	genbank	58_37c	+1	reviewed	missense	c.1916	p.C639S	1.000	NULL	HMMPfam_SCA7,HMMSmart_ZnF_C2H2	-	no_errors
BRD3	0	genome.wustl.edu	37	9	136918532	136918532	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	9	136918532	136918532	G	A	SNP	BRD3	NM_007371.3	human	genbank	58_37c	-1	reviewed	missense	c.68	p.P23L	1.000	superfamily_Bromodomain	HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain,PatternScan_BROMODOMAIN_1	-	no_errors
C3orf55	0	genome.wustl.edu	37	3	157289743	157289743	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	3	157289743	157289743	G	T	SNP	C3orf55	NM_001130002.1	human	genbank	58_37c	+1	validated	splice_site	c.214-1	e3-1	0.008	-	-	-	no_errors
CCDC23	0	genome.wustl.edu	37	1	43282112	43282112	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	1	43282112	43282112	T	C	SNP	CCDC23	NM_199342.3	human	genbank	58_37c	-1	validated	missense	c.104	p.Q35R	1.000	NULL	NULL	-	no_errors
CTCF	0	genome.wustl.edu	37	16	67644736	67644736	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	16	67644736	67644736	A	G	SNP	CTCF	NM_006565.2	human	genbank	58_37c	+1	reviewed	missense	c.1	p.M1V	1.000	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
DSC1	0	genome.wustl.edu	37	18	28714069	28714069	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	18	28714069	28714069	C	T	SNP	DSC1	NM_024421.2	human	genbank	58_37c	-1	reviewed	missense	c.1901	p.R634Q	0.000	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_pro,superfamily_Cadherin-like	-	no_errors
ENSG00000198840	0	genome.wustl.edu	37	MT	10197	10197	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	MT	10197	10197	G	A	SNP	ENSG00000198840	ENST00000361227	human	ensembl	58_37c	+1	known	missense	c.139	p.A47T	NULL	HMMPfam_Oxidored_q4	HMMPfam_Oxidored_q4	-	no_stop_codon:bad_bp_length_for_coding_region:mismatch_between_exon_seq_and_reference
ENSG00000198886	0	genome.wustl.edu	37	MT	11225	11225	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	MT	11225	11225	G	A	SNP	ENSG00000198886	ENST00000361381	human	ensembl	58_37c	+1	known	missense	c.466	p.G156S	NULL	HMMPfam_Oxidored_q1	HMMPfam_Oxidored_q5_N,HMMPfam_Oxidored_q1	-	no_stop_codon:bad_bp_length_for_coding_region:mismatch_between_exon_seq_and_reference
ENSG00000211459	0	genome.wustl.edu	37	MT	902	902	+	RNA	SNP	G	G	A	novel	unknown	TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	MT	902	902	G	A	SNP	ENSG00000211459	ENST00000389680	human	ensembl	58_37c	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors
ENSG00000233000	0	genome.wustl.edu	37	4	49647114	49647114	+	Silent	SNP	T	T	C	novel	unknown	TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	4	49647114	49647114	T	C	SNP	ENSG00000233000	ENST00000413383	human	ensembl	58_37c	+1	known	silent	c.45	p.N15	0.000	NULL	NULL	-	no_stop_codon
EXOSC9	0	genome.wustl.edu	37	4	122735146	122735146	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	4	122735146	122735146	T	C	SNP	EXOSC9	NM_001034194.1	human	genbank	58_37c	+1	validated	missense	c.1100	p.I367T	0.980	NULL	HMMPfam_RNase_PH,HMMPfam_RNase_PH_C,superfamily_3_ExoRNase,superfamily_Ribosomal_S5_D2-typ_fold	-	no_errors
FAM57A	0	genome.wustl.edu	37	17	636320	636321	+	In_Frame_Ins	INS	-	-	CTC	novel	unknown	TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	17	636320	636321	-	CTC	INS	FAM57A	ENST00000451373	human	ensembl	58_37c	+1	known	in_frame_ins	c.324_325	p.109in_frame_insL	0.000:0.002	HMMSmart_SM00724	HMMPfam_TRAM_LAG1_CLN8,HMMSmart_SM00724	-	no_errors
FLNB	0	genome.wustl.edu	37	3	58080583	58080583	+	Missense_Mutation	SNP	A	A	G	rs145036794	byFrequency	TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	3	58080583	58080583	A	G	SNP	FLNB	NM_001457.3	human	genbank	58_37c	+1	reviewed	missense	c.808	p.M270V	1.000	HMMSmart_IG_FLMN,superfamily_Ig_E-set,HMMPfam_Filamin	HMMSmart_IG_FLMN,PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_CH,superfamily_Ig_E-set,superfamily_Calponin-homology,HMMPfam_Filamin	-	no_errors
FOXG1	0	genome.wustl.edu	37	14	29237628	29237628	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	14	29237628	29237628	C	T	SNP	FOXG1	NM_005249.3	human	genbank	58_37c	+1	reviewed	silent	c.1143	p.A381	1.000	NULL	HMMPfam_Fork_head,HMMSmart_FH,PatternScan_FORK_HEAD_1,PatternScan_FORK_HEAD_2,superfamily_SSF46785	-	no_errors
GAP43	0	genome.wustl.edu	37	3	115439676	115439676	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	3	115439676	115439676	C	T	SNP	GAP43	NM_001130064.1	human	genbank	58_37c	+1	reviewed	missense	c.772	p.R258W	1.000	HMMPfam_Neuromodulin	HMMPfam_IQ,HMMSmart_IQ,HMMPfam_Neuromodulin,PatternScan_NEUROMODULIN_2,HMMPfam_Neuromodulin_N	-	no_errors
GATA3	0	genome.wustl.edu	37	10	8111433	8111434	+	Splice_Site	DEL	CA	CA	-	novel	unknown	TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	CA	CA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	10	8111433	8111434	CA	-	DEL	GATA3	NM_001002295.1	human	genbank	58_37c	+1	reviewed	splice_site_del	c.925-3_925-2	e4-2	1.000:1.000	-	-	-	no_errors
HCFC2	0	genome.wustl.edu	37	12	104495851	104495851	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	12	104495851	104495851	G	C	SNP	HCFC2	NM_013320.2	human	genbank	58_37c	+1	reviewed	missense	c.1984	p.G662R	1.000	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III	HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_Kelch_1,superfamily_Fibronectin type III,superfamily_Galactose oxidase central domain,HMMPfam_Kelch_2	-	no_errors
KAT2B	0	genome.wustl.edu	37	3	20167590	20167590	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	3	20167590	20167590	G	A	SNP	KAT2B	NM_003884.4	human	genbank	58_37c	+1	reviewed	missense	c.1607	p.R536Q	1.000	superfamily_Acyl_CoA_acyltransferase	HMMPfam_Acetyltransf_1,HMMPfam_Bromodomain,HMMSmart_BROMO,superfamily_Bromodomain,HMMPfam_PCAF_N,superfamily_Acyl_CoA_acyltransferase,PatternScan_BROMODOMAIN_1	-	no_errors
KDM4C	0	genome.wustl.edu	37	9	6805599	6805599	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	9	6805599	6805599	G	C	SNP	KDM4C	NM_015061.3	human	genbank	58_37c	+1	reviewed	missense	c.145	p.V49L	1.000	HMMPfam_JmjN,HMMSmart_SM00545	HMMSmart_SM00249,HMMSmart_SM00333,HMMSmart_SM00558,HMMPfam_JmjN,HMMSmart_SM00545,superfamily_FYVE/PHD zinc finger,HMMPfam_JmjC,superfamily_Tudor/PWWP/MBT	-	no_errors
KIAA1370	0	genome.wustl.edu	37	15	52879367	52879367	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	15	52879367	52879367	G	A	SNP	KIAA1370	NM_019600.2	human	genbank	58_37c	-1	validated	missense	c.2858	p.P953L	1.000	NULL	NULL	-	no_errors
LIMS1	0	genome.wustl.edu	37	2	109300418	109300418	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	2	109300418	109300418	G	T	SNP	LIMS1	NM_004987.3	human	genbank	58_37c	+1	reviewed	missense	c.941	p.R314I	1.000	NULL	HMMPfam_LIM,HMMSmart_LIM,PatternScan_LIM_DOMAIN_1,superfamily_SSF57716	-	no_errors
LOC344382	0	genome.wustl.edu	37	2	38044591	38044591	+	Silent	SNP	T	T	C	novel	unknown	TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	2	38044591	38044591	T	C	SNP	LOC344382	XM_293026.6	human	genbank	58_37c	+1	model	silent	c.534	p.S178	0.892	superfamily_WD40 repeat-like	HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
LOC392335	0	genome.wustl.edu	37	9	66513925	66513925	+	RNA	SNP	T	T	C	novel	unknown	TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	9	66513925	66513925	T	C	SNP	LOC392335	XR_037043.2	human	genbank	58_37c	+1	model	rna	NULL	NULL	0.998	-	-	-	pseudogene
LOC442421	0	genome.wustl.edu	37	9	66499739	66499739	+	RNA	SNP	G	G	A	novel	unknown	TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	9	66499739	66499739	G	A	SNP	LOC442421	NR_024496.1	human	genbank	58_37c	+1	validated	rna	NULL	NULL	1.000	-	-	-	no_errors
LOC728297	0	genome.wustl.edu	37	9	45362640	45362642	+	In_Frame_Del	DEL	AGA	AGA	-	novel	unknown	TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	AGA	AGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	9	45362640	45362642	AGA	-	DEL	LOC728297	XM_001127111.2	human	genbank	58_37c	+1	model	in_frame_del	c.614_616	p.K206in_frame_del	1.000:1.000:1.000	HMMPfam_7tm_1	HMMPfam_7tm_1	-	no_errors
LOC729141	0	genome.wustl.edu	37	2	189092874	189092874	+	RNA	SNP	T	T	C	novel	unknown	TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	2	189092874	189092874	T	C	SNP	LOC729141	XR_015463.2	human	genbank	58_37c	+1	model	rna	NULL	NULL	0.999	-	-	-	pseudogene
MAP3K1	0	genome.wustl.edu	37	5	56160679	56160680	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	5	56160679	56160680	-	A	INS	MAP3K1	NM_005921.1	human	genbank	58_37c	+1	validated	frame_shift_ins	c.953_954	p.L319fs	0.965:0.937	NULL	HMMSmart_RING,HMMSmart_S_TKc,HMMPfam_SWIM,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,PatternScan_ZF_RING_1,superfamily_SSF57850	-	no_errors
MARS	0	genome.wustl.edu	37	12	57894289	57894289	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	12	57894289	57894289	A	T	SNP	MARS	NM_004990.2	human	genbank	58_37c	+1	reviewed	missense	c.1277	p.N426I	1.000	HMMPfam_tRNA-synt_1g,superfamily_SSF52374,superfamily_SSF57770	HMMPfam_WHEP-TRS,PatternScan_WHEP_TRS_1,PatternScan_AA_TRNA_LIGASE_I,HMMPfam_GST_C,superfamily_S15/NS1_bind,superfamily_tRNAsyn_1a_bind,superfamily_GST_C_like,HMMPfam_tRNA-synt_1g,superfamily_SSF52374,superfamily_SSF57770	-	no_errors
MLL3	0	genome.wustl.edu	37	7	151841851	151841852	+	Frame_Shift_Ins	INS	-	-	CC	novel	unknown	TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	7	151841851	151841852	-	CC	INS	MLL3	NM_170606.2	human	genbank	58_37c	-1	reviewed	frame_shift_ins	c.14290_14289	p.K4763fs	0.999:1.000	superfamily_SET domain	PatternScan_HMGI_Y,HMMPfam_HMG_box,HMMSmart_SM00398,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00184,HMMSmart_SM00249,HMMSmart_SM00508,HMMPfam_FYRN,HMMPfam_FYRC,superfamily_FYVE/PHD zinc finger,HMMPfam_AT_hook,HMMSmart_SM00542,HMMSmart_SM00541,PatternScan_ZF_PHD_1,HMMPfam_PHD,PatternScan_ATPASE_ALPHA_BETA,superfamily_SET domain	-	no_errors
MTUS2	0	genome.wustl.edu	37	13	29608146	29608146	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	13	29608146	29608146	G	A	SNP	MTUS2	NM_001033602.2	human	genbank	58_37c	+1	validated	missense	c.2360	p.R787H	0.992	NULL	NULL	-	no_errors
NCKAP1L	0	genome.wustl.edu	37	12	54902260	54902260	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	12	54902260	54902260	C	T	SNP	NCKAP1L	NM_005337.4	human	genbank	58_37c	+1	reviewed	missense	c.451	p.R151W	0.997	HMMPfam_Nckap1	HMMPfam_Nckap1	-	no_errors
NEUROD2	0	genome.wustl.edu	37	17	37761947	37761948	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	17	37761947	37761948	-	G	INS	NEUROD2	NM_006160.3	human	genbank	58_37c	-1	reviewed	frame_shift_ins	c.906_905	p.L303fs	1.000:1.000	NULL	HMMPfam_HLH,HMMSmart_HLH,superfamily_HLH_basic	-	no_errors
NFE2L2	0	genome.wustl.edu	37	2	178098009	178098009	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	2	178098009	178098009	G	C	SNP	NFE2L2	NM_006164.3	human	genbank	58_37c	-1	validated	missense	c.371	p.A124G	1.000	NULL	HMMSmart_SM00338,PatternScan_BZIP_BASIC,superfamily_A DNA-binding domain in eukaryotic transcription factors,HMMPfam_bZIP_1	-	no_errors
P4HTM	0	genome.wustl.edu	37	3	49044240	49044240	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	3	49044240	49044240	T	C	SNP	P4HTM	NM_177938.2	human	genbank	58_37c	+1	reviewed	missense	c.1592	p.F531S	1.000	NULL	HMMPfam_2OG-FeII_Oxy,HMMSmart_P4Hc,PatternScan_EF_HAND_1,superfamily_SSF47473	-	no_errors
PCDH19	0	genome.wustl.edu	37	X	99662740	99662740	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	X	99662740	99662740	G	A	SNP	PCDH19	NM_001105243.1	human	genbank	58_37c	-1	reviewed	missense	c.856	p.R286C	0.115	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin	HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin	-	no_errors
PCDHB10	0	genome.wustl.edu	37	5	140574170	140574175	+	In_Frame_Del	DEL	AGGCCG	AGGCCG	-	novel	unknown	TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	AGGCCG	AGGCCG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	5	140574170	140574175	AGGCCG	-	DEL	PCDHB10	NM_018930.3	human	genbank	58_37c	+1	reviewed	in_frame_del	c.2045_2050	p.EA684in_frame_del	0.001:0.028:0.066:0.762:0.806:0.823	NULL	HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin	-	no_errors
PLD3	0	genome.wustl.edu	37	19	40883954	40883954	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	19	40883954	40883954	G	A	SNP	PLD3	NM_001031696.2	human	genbank	58_37c	+1	validated	silent	c.1347	p.T449	0.495	superfamily_SSF56024	HMMPfam_PLDc,HMMSmart_PLDc,HMMPfam_PLD_envelope,superfamily_SSF56024	-	no_errors
PNPLA7	0	genome.wustl.edu	37	9	140395220	140395220	+	Silent	SNP	G	G	A	rs148879085	unknown	TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	9	140395220	140395220	G	A	SNP	PNPLA7	NM_001098537.1	human	genbank	58_37c	-1	validated	silent	c.1680	p.T560	0.001	HMMPfam_cNMP_binding,HMMSmart_SM00100,superfamily_cAMP-binding domain-like	HMMPfam_cNMP_binding,HMMSmart_SM00100,HMMPfam_Patatin,superfamily_FabD/lysophospholipase-like,superfamily_cAMP-binding domain-like	-	no_errors
PSMA3	0	genome.wustl.edu	37	14	58737668	58737668	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	14	58737668	58737668	T	A	SNP	PSMA3	NM_002788.2	human	genbank	58_37c	+1	reviewed	missense	c.675	p.H225Q	1.000	superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases)	HMMPfam_Proteasome_A_N,PatternScan_PROTEASOME_A,HMMPfam_Proteasome,superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases)	-	no_errors
SEC23IP	0	genome.wustl.edu	37	10	121674317	121674317	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	10	121674317	121674317	G	A	SNP	SEC23IP	NM_007190.2	human	genbank	58_37c	+1	reviewed	missense	c.1388	p.S463N	1.000	NULL	HMMPfam_SAM_1,HMMSmart_SM00454,HMMPfam_DDHD,superfamily_SAM/Pointed domain	-	no_errors
SLC25A5	0	genome.wustl.edu	37	X	118603706	118603707	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	X	118603706	118603707	-	G	INS	SLC25A5	NM_001152.4	human	genbank	58_37c	+1	reviewed	frame_shift_ins	c.194_195	p.V67fs	1.000:1.000	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr	-	no_errors
SLC26A6	0	genome.wustl.edu	37	3	48668568	48668568	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	3	48668568	48668568	A	C	SNP	SLC26A6	NM_022911.2	human	genbank	58_37c	-1	reviewed	missense	c.992	p.V331G	0.007	HMMPfam_Sulfate_transp	HMMPfam_STAS,superfamily_Anti-sigma factor antagonist SpoIIaa,HMMPfam_Sulfate_transp,PatternScan_SLC26A	-	no_errors
SPAG11B	0	genome.wustl.edu	37	8	7320248	7320248	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	8	7320248	7320248	C	T	SNP	SPAG11B	NM_058201.2	human	genbank	58_37c	-1	reviewed	silent	c.195	p.P65	0.033	HMMPfam_Sperm_Ag_HE2	HMMPfam_Defensin_beta,HMMPfam_Sperm_Ag_HE2	-	no_errors
SPTA1	0	genome.wustl.edu	37	1	158654984	158654984	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	1	158654984	158654984	G	A	SNP	SPTA1	NM_003126.2	human	genbank	58_37c	-1	reviewed	nonsense	c.178	p.R60*	0.870	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_Spectrin,HMMPfam_efhand_Ca_insen,HMMSmart_SM00150,superfamily_Spectrin repeat,superfamily_EF-hand	-	no_errors
TAB3	0	genome.wustl.edu	37	X	30872398	30872398	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	X	30872398	30872398	C	T	SNP	TAB3	NM_152787.3	human	genbank	58_37c	-1	reviewed	missense	c.1384	p.A462T	1.000	NULL	HMMPfam_zf-RanBP,HMMSmart_SM00547,PatternScan_ZF_RANBP2_1,HMMPfam_CUE,HMMSmart_SM00546,superfamily_NZF domain	-	no_errors
TBX3	0	genome.wustl.edu	37	12	115118782	115118782	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	12	115118782	115118782	G	A	SNP	TBX3	NM_016569.3	human	genbank	58_37c	-1	reviewed	missense	c.559	p.H187Y	1.000	HMMPfam_T-box,HMMSmart_SM00425,superfamily_p53-like transcription factors,PatternScan_TBOX_2	HMMPfam_T-box,HMMSmart_SM00425,superfamily_p53-like transcription factors,PatternScan_TBOX_2,PatternScan_TBOX_1	-	no_errors
TPM2	0	genome.wustl.edu	37	9	35684822	35684823	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	9	35684822	35684823	-	G	INS	TPM2	ENST00000378309	human	ensembl	58_37c	-1	known	frame_shift_ins	c.878_877	p.R293fs	0.041:0.037	NULL	HMMPfam_Tropomyosin	-	no_errors
UGT1A4	0	genome.wustl.edu	37	2	234680995	234680995	+	Silent	SNP	T	T	C	novel	unknown	TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	2	234680995	234680995	T	C	SNP	UGT1A4	NM_007120.2	human	genbank	58_37c	+1	reviewed	silent	c.1395	p.F465	0.994	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase	HMMPfam_UDPGT,PatternScan_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase	-	no_errors
USP24	0	genome.wustl.edu	37	1	55589159	55589159	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	1	55589159	55589159	G	A	SNP	USP24	NM_015306.2	human	genbank	58_37c	-1	validated	missense	c.3757	p.L1253F	1.000	NULL	HMMPfam_UCH,PatternScan_SUGAR_TRANSPORT_1,PatternScan_UCH_2_1,PatternScan_UCH_2_2,superfamily_Cysteine proteinases,superfamily_Ubiquitin-like	-	no_errors
VSIG8	0	genome.wustl.edu	37	1	159828685	159828685	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1X6-01A-11D-A14K-09	TCGA-D8-A1X6-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1951aa38-481b-464c-9a78-0819312a0a93	4a4bd36e-5543-429f-aabe-a9811e0df7ae	1	159828685	159828685	G	A	SNP	VSIG8	NM_001013661.1	human	genbank	58_37c	-1	provisional	missense	c.67	p.R23W	1.000	NULL	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin	-	no_errors
