Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ADAMTSL3	0	genome.wustl.edu	37	15	84488589	84488589	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	15	84488589	84488589	C	T	SNP	ADAMTSL3	NM_207517.2	human	genbank	58_37c	+1	validated	silent	c.390	p.F130	1.000	NULL	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_PLAC,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
AMPH	0	genome.wustl.edu	37	7	38502653	38502653	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	7	38502653	38502653	G	T	SNP	AMPH	ENST00000441628	human	ensembl	58_37c	-1	known	missense	c.61	p.P21T	0.004	NULL	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
AP2M1	0	genome.wustl.edu	37	3	183898426	183898445	+	Frame_Shift_Del	DEL	CCTCCAGCATCAGGTAAGCT	CCTCCAGCATCAGGTAAGCT	-	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	CCTCCAGCATCAGGTAAGCT	CCTCCAGCATCAGGTAAGCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	3	183898426	183898445	CCTCCAGCATCAGGTAAGCT	-	DEL	AP2M1	NM_004068.3	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.431_429	p.K144fs	0.304:0.710:0.731:0.740:0.932:0.990:1.000:1.000:1.000:1.000:1.000:1.000:1.000	NULL	HMMPfam_Adap_comp_sub,superfamily_Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor,superfamily_SNARE-like,PatternScan_CLAT_ADAPTOR_M_1,PatternScan_CLAT_ADAPTOR_M_2	-	no_errors
ARFGEF1	0	genome.wustl.edu	37	8	68139523	68139523	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	8	68139523	68139523	C	T	SNP	ARFGEF1	NM_006421.3	human	genbank	58_37c	-1	reviewed	missense	c.3765	p.M1255I	1.000	HMMPfam_DUF1981,superfamily_ARM-type_fold	HMMPfam_Sec7,HMMSmart_Sec7,superfamily_Sec7,HMMPfam_DUF1981,superfamily_ARM-type_fold	-	no_errors
ASL	0	genome.wustl.edu	37	7	65552371	65552371	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	7	65552371	65552371	C	T	SNP	ASL	NM_000048.3	human	genbank	58_37c	+1	reviewed	missense	c.653	p.A218V	0.997	HMMPfam_Lyase_1,superfamily_L-Aspartase-like	HMMPfam_Lyase_1,superfamily_L-Aspartase-like,PatternScan_FUMARATE_LYASES	-	no_errors
BBS10	0	genome.wustl.edu	37	12	76741020	76741020	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	12	76741020	76741020	G	T	SNP	BBS10	NM_024685.3	human	genbank	58_37c	-1	reviewed	missense	c.745	p.R249S	1.000	superfamily_GroEL-ATPase	HMMPfam_Cpn60_TCP1,superfamily_GroEL-ATPase	-	no_errors
BLMH	0	genome.wustl.edu	37	17	28613877	28613877	+	Nonsense_Mutation	SNP	A	A	C	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	17	28613877	28613877	A	C	SNP	BLMH	NM_000386.2	human	genbank	58_37c	-1	reviewed	nonsense	c.507	p.Y169*	0.852	HMMPfam_Peptidase_C1_2,superfamily_Cysteine proteinases	PatternScan_THIOL_PROTEASE_CYS,HMMPfam_Peptidase_C1_2,superfamily_Cysteine proteinases	-	no_errors
C10orf12	0	genome.wustl.edu	37	10	98742390	98742390	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	10	98742390	98742390	G	T	SNP	C10orf12	NM_015652.2	human	genbank	58_37c	+1	predicted	missense	c.1243	p.D415Y	0.000	NULL	NULL	-	no_errors
C10orf12	0	genome.wustl.edu	37	10	98742978	98742978	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	10	98742978	98742978	A	G	SNP	C10orf12	NM_015652.2	human	genbank	58_37c	+1	predicted	missense	c.1831	p.K611E	0.001	NULL	NULL	-	no_errors
C2orf18	0	genome.wustl.edu	37	2	26998432	26998432	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	2	26998432	26998432	G	A	SNP	C2orf18	NM_017877.3	human	genbank	58_37c	+1	validated	silent	c.423	p.V141	0.011	HMMPfam_DUF6,superfamily_SSF103481	HMMPfam_DUF6,superfamily_SSF103481	-	no_errors
CASP8	0	genome.wustl.edu	37	2	202141566	202141566	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	2	202141566	202141566	A	T	SNP	CASP8	NM_001080125.1	human	genbank	58_37c	+1	reviewed	missense	c.854	p.Y285F	1.000	HMMSmart_SM00115,superfamily_Caspase-like	HMMPfam_DED,HMMSmart_SM00031,superfamily_DEATH domain,HMMPfam_Peptidase_C14,HMMSmart_SM00115,PatternScan_CASPASE_HIS,PatternScan_CASPASE_CYS,superfamily_Caspase-like	-	no_errors
CCDC147	0	genome.wustl.edu	37	10	106160488	106160488	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	10	106160488	106160488	T	A	SNP	CCDC147	NM_001008723.1	human	genbank	58_37c	+1	validated	missense	c.1866	p.D622E	0.580	NULL	NULL	-	no_errors
CCDC74B	0	genome.wustl.edu	37	2	130900856	130900856	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	2	130900856	130900856	G	A	SNP	CCDC74B	NM_207310.1	human	genbank	58_37c	-1	provisional	missense	c.281	p.T94I	0.830	NULL	NULL	-	no_errors
CDC42BPB	0	genome.wustl.edu	37	14	103400160	103400160	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	14	103400160	103400160	T	G	SNP	CDC42BPB	NM_006035.3	human	genbank	58_37c	-1	reviewed	missense	c.5025	p.K1675N	1.000	NULL	HMMPfam_PBD,HMMSmart_PBD,HMMSmart_S_TK_X,HMMPfam_CNH,HMMSmart_CNH,HMMPfam_PH,HMMSmart_PH,HMMPfam_C1_1,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,HMMPfam_DMPK_coil,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,HMMPfam_Pkinase_C,superfamily_SSF50729,superfamily_SSF57889	-	no_errors
CDIPT	0	genome.wustl.edu	37	16	29872462	29872462	+	Silent	SNP	A	A	G	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	16	29872462	29872462	A	G	SNP	CDIPT	NM_006319.3	human	genbank	58_37c	-1	validated	silent	c.297	p.S99	0.997	HMMPfam_CDP-OH_P_transf	HMMPfam_CDP-OH_P_transf,PatternScan_CDP_ALCOHOL_P_TRANSF	-	no_errors
CECR2	0	genome.wustl.edu	37	22	18028881	18028881	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	22	18028881	18028881	C	A	SNP	CECR2	ENST00000400573	human	ensembl	58_37c	+1	known	missense	c.3838	p.H1280N	1.000	NULL	HMMPfam_Bromodomain,HMMSmart_BROMO,superfamily_Bromodomain,PatternScan_BROMODOMAIN_1	-	no_errors
CPT1A	0	genome.wustl.edu	37	11	68566686	68566686	+	Nonsense_Mutation	SNP	G	G	T	rs146551320	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	11	68566686	68566686	G	T	SNP	CPT1A	NM_001876.3	human	genbank	58_37c	-1	reviewed	nonsense	c.693	p.Y231*	0.427	HMMPfam_Carn_acyltransf,superfamily_CoA-dependent acyltransferases	HMMPfam_Carn_acyltransf,PatternScan_ACYLTRANSF_C_1,PatternScan_ACYLTRANSF_C_2,superfamily_CoA-dependent acyltransferases	-	no_errors
DIAPH1	0	genome.wustl.edu	37	5	140953199	140953199	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	5	140953199	140953199	G	C	SNP	DIAPH1	NM_005219.4	human	genbank	58_37c	-1	reviewed	missense	c.2218	p.P740A	1.000	HMMPfam_Drf_FH1,superfamily_Formin homology 2 domain (FH2 domain)	HMMSmart_SM00498,HMMPfam_Drf_FH1,HMMPfam_Drf_DAD,HMMPfam_Drf_FH3,HMMPfam_Drf_GBD,HMMPfam_FH2,superfamily_Formin homology 2 domain (FH2 domain)	-	no_errors
DNASE1L1	0	genome.wustl.edu	37	X	153631301	153631301	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	X	153631301	153631301	G	C	SNP	DNASE1L1	NM_001009932.1	human	genbank	58_37c	-1	reviewed	missense	c.756	p.F252L	0.002	HMMPfam_Exo_endo_phos,superfamily_Exo_endo_phos,HMMSmart_DNaseIc	HMMPfam_Exo_endo_phos,superfamily_Exo_endo_phos,HMMSmart_DNaseIc,PatternScan_DNASE_I_2,PatternScan_DNASE_I_1	-	no_errors
DYX1C1	0	genome.wustl.edu	37	15	55727258	55727258	+	Splice_Site	SNP	T	T	C	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	15	55727258	55727258	T	C	SNP	DYX1C1	NM_130810.2	human	genbank	58_37c	-1	reviewed	splice_site	c.894-2	e7-2	0.997	-	-	-	no_errors
ENSG00000166007	0	genome.wustl.edu	37	11	55065515	55065515	+	Silent	SNP	G	G	T	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	11	55065515	55065515	G	T	SNP	ENSG00000166007	ENST00000309470	human	ensembl	58_37c	-1	known	silent	c.231	p.A77	0.232	superfamily_SSF57850	HMMPfam_zf-B_box,HMMSmart_RING,HMMPfam_SPRY,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_SSF57850	-	no_errors
ENSG00000198786	0	genome.wustl.edu	37	MT	12434	12434	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	MT	12434	12434	C	T	SNP	ENSG00000198786	ENST00000361567	human	ensembl	58_37c	+1	known	missense	c.98	p.P33L	NULL	NULL	HMMPfam_Oxidored_q1_N,HMMPfam_Oxidored_q1,HMMPfam_NADH5_C	-	mismatch_between_exon_seq_and_reference
ENSG00000198886	0	genome.wustl.edu	37	MT	10946	10947	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	MT	10946	10947	-	C	INS	ENSG00000198886	ENST00000361381	human	ensembl	58_37c	+1	known	frame_shift_ins	c.187_188	p.L65fs	NULL	HMMPfam_Oxidored_q5_N	HMMPfam_Oxidored_q5_N,HMMPfam_Oxidored_q1	-	no_stop_codon:bad_bp_length_for_coding_region:mismatch_between_exon_seq_and_reference
ENSG00000232657	0	genome.wustl.edu	37	4	49110475	49110475	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	4	49110475	49110475	A	C	SNP	ENSG00000232657	ENST00000417204	human	ensembl	58_37c	-1	known	missense	c.27	p.N9K	0.000	NULL	NULL	-	no_stop_codon
ENSG00000249665	0	genome.wustl.edu	37	8	86786357	86786357	+	RNA	SNP	C	C	A	rs60098459	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	8	86786357	86786357	C	A	SNP	ENSG00000249665	ENST00000503540	human	ensembl	58_37c	+1	known	rna	NULL	NULL	0.034	-	-	-	no_errors
EWSR1	0	genome.wustl.edu	37	22	29670255	29670255	+	Splice_Site	SNP	A	A	G	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	22	29670255	29670255	A	G	SNP	EWSR1	ENST00000405024	human	ensembl	58_37c	+1	known	splice_site	c.230-2	e5-2	1.000	-	-	-	no_stop_codon
FAM186A	0	genome.wustl.edu	37	12	50748233	50748233	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	12	50748233	50748233	C	A	SNP	FAM186A	NM_001145475.1	human	genbank	58_37c	-1	provisional	missense	c.2382	p.M794I	0.003	NULL	NULL	-	no_errors
FAM75A6	0	genome.wustl.edu	37	9	43626815	43626815	+	Silent	SNP	G	G	A	rs76166720	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	9	43626815	43626815	G	A	SNP	FAM75A6	NM_001145196.1	human	genbank	58_37c	-1	predicted	silent	c.1872	p.D624	0.000	NULL	NULL	-	no_errors
FAM83F	0	genome.wustl.edu	37	22	40417461	40417461	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	22	40417461	40417461	C	T	SNP	FAM83F	NM_138435.2	human	genbank	58_37c	+1	validated	missense	c.947	p.S316F	1.000	NULL	HMMPfam_DUF1669,superfamily_Phospholipase D/nuclease	-	no_errors
FBXO15	0	genome.wustl.edu	37	18	71740756	71740756	+	Silent	SNP	G	G	C	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	18	71740756	71740756	G	C	SNP	FBXO15	NM_001142958.1	human	genbank	58_37c	-1	reviewed	silent	c.1473	p.V491	1.000	NULL	HMMPfam_F-box,HMMSmart_FBOX,superfamily_SSF81383	-	no_errors
FLT4	0	genome.wustl.edu	37	5	180046347	180046347	+	Silent	SNP	C	T	T	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	5	180046347	180046347	C	T	SNP	FLT4	NM_182925.4	human	genbank	58_37c	-1	reviewed	silent	c.2667	p.E889	1.000	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,PatternScan_RECEPTOR_TYR_KIN_III,HMMSmart_SM00220,HMMSmart_SM00408,HMMSmart_SM00409,PatternScan_PROTEIN_KINASE_TYR,superfamily_Protein kinase-like (PK-like),HMMPfam_I-set,HMMPfam_V-set,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,superfamily_Immunoglobulin	-	no_errors
FMNL1	0	genome.wustl.edu	37	17	43314962	43314962	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	17	43314962	43314962	G	A	SNP	FMNL1	NM_005892.3	human	genbank	58_37c	+1	reviewed	missense	c.850	p.G284R	1.000	HMMPfam_Drf_FH3	HMMSmart_SM00498,HMMPfam_Drf_FH3,HMMPfam_Drf_GBD,HMMPfam_FH2,superfamily_Formin homology 2 domain (FH2 domain)	-	no_errors
FNDC7	0	genome.wustl.edu	37	1	109256138	109256138	+	Silent	SNP	T	T	G	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	1	109256138	109256138	T	G	SNP	FNDC7	NM_001144937.1	human	genbank	58_37c	+1	provisional	silent	c.69	p.A23	1.000	NULL	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III	-	no_errors
FSTL5	0	genome.wustl.edu	37	4	162307095	162307095	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	4	162307095	162307095	T	C	SNP	FSTL5	NM_020116.3	human	genbank	58_37c	-1	validated	missense	c.2348	p.K783R	1.000	superfamily_Amine_DH_B_like	HMMPfam_Kazal_1,HMMSmart_KAZAL,PatternScan_KAZAL,HMMSmart_IGc2,superfamily_Amine_DH_B_like,HMMPfam_I-set,HMMPfam_ig,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_SSF100895,superfamily_SSF47473,superfamily_SSF48726	-	no_errors
GIGYF1	0	genome.wustl.edu	37	7	100284335	100284337	+	In_Frame_Del	DEL	CCT	CCT	-	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	CCT	CCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	7	100284335	100284337	CCT	-	DEL	GIGYF1	NM_022574.4	human	genbank	58_37c	-1	validated	in_frame_del	c.631_629	p.E210in_frame_del	1.000:0.992:0.999	NULL	HMMPfam_GYF,HMMSmart_GYF,superfamily_GYF	-	no_errors
GLIS3	0	genome.wustl.edu	37	9	3856175	3856175	+	Silent	SNP	A	A	C	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	9	3856175	3856175	A	C	SNP	GLIS3	NM_001042413.1	human	genbank	58_37c	-1	reviewed	silent	c.2307	p.P769	0.978	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
GP6	0	genome.wustl.edu	37	19	55526258	55526258	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	19	55526258	55526258	C	G	SNP	GP6	NM_001083899.1	human	genbank	58_37c	-1	validated	missense	c.1055	p.R352T	0.000	NULL	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
GPR126	0	genome.wustl.edu	37	6	142726951	142726951	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	6	142726951	142726951	A	G	SNP	GPR126	NM_198569.2	human	genbank	58_37c	+1	reviewed	missense	c.2254	p.T752A	1.000	NULL	HMMPfam_GPS,HMMSmart_GPS,HMMPfam_7tm_2,HMMPfam_CUB,HMMSmart_CUB,superfamily_CUB,superfamily_ConA_like_lec_gl,PatternScan_G_PROTEIN_RECEP_F2_2,superfamily_SSF81321	-	no_errors
HGC6.3	0	genome.wustl.edu	37	6	168377009	168377009	+	Silent	SNP	T	T	G	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	6	168377009	168377009	T	G	SNP	HGC6.3	NM_001129895.1	human	genbank	58_37c	-1	predicted	silent	c.324	p.P108	0.936	NULL	NULL	-	no_errors
HIST1H3I	0	genome.wustl.edu	37	6	27840018	27840018	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	6	27840018	27840018	C	G	SNP	HIST1H3I	NM_003533.2	human	genbank	58_37c	-1	reviewed	missense	c.76	p.A26P	1.000	superfamily_Histone-fold	HMMSmart_SM00428,PatternScan_HISTONE_H3_1,PatternScan_HISTONE_H3_2,HMMPfam_Histone,superfamily_Histone-fold	-	no_errors
HLA-DRB6	0	genome.wustl.edu	37	6	32520834	32520844	+	RNA	DEL	GTCCAGCGCAG	GTCCAGCGCAG	-	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	GTCCAGCGCAG	GTCCAGCGCAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	6	32520834	32520844	GTCCAGCGCAG	-	DEL	HLA-DRB6	NR_001298.1	human	genbank	58_37c	-1	provisional	rna	NULL	NULL	0.995:0.988:0.985:0.943:0.810:0.673:0.530:0.488:0.478:0.468:0.458	-	-	-	pseudogene
HNRNPD	0	genome.wustl.edu	37	4	83278494	83278495	+	Frame_Shift_Del	DEL	TT	TT	-	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	TT	TT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	4	83278494	83278495	TT	-	DEL	HNRNPD	NM_031370.2	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.725_724	p.K242fs	1.000:1.000	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD	HMMPfam_RRM_1,HMMSmart_SM00360,HMMPfam_CBFNT,superfamily_RNA-binding domain RBD	-	no_errors
HS6ST1	0	genome.wustl.edu	37	2	129075877	129075877	+	Missense_Mutation	SNP	G	G	T	rs61738292	byFrequency	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	2	129075877	129075877	G	T	SNP	HS6ST1	NM_004807.2	human	genbank	58_37c	-1	reviewed	missense	c.261	p.D87E	1.000	HMMPfam_HS6ST	HMMPfam_HS6ST	-	no_errors
IGSF1	0	genome.wustl.edu	37	X	130416483	130416483	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	X	130416483	130416483	T	C	SNP	IGSF1	NM_001555.4	human	genbank	58_37c	-1	reviewed	missense	c.1181	p.Y394C	0.002	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
IL1RAP	0	genome.wustl.edu	37	3	190321988	190321988	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	3	190321988	190321988	A	T	SNP	IL1RAP	NM_002182.3	human	genbank	58_37c	+1	reviewed	nonsense	c.136	p.K46*	1.000	HMMSmart_SM00409,superfamily_Immunoglobulin	HMMPfam_TIR,HMMSmart_SM00255,superfamily_Toll/Interleukin receptor TIR domain,HMMSmart_SM00409,superfamily_Immunoglobulin	-	no_errors
IMMT	0	genome.wustl.edu	37	2	86400803	86400803	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	2	86400803	86400803	G	C	SNP	IMMT	NM_006839.2	human	genbank	58_37c	-1	validated	missense	c.391	p.Q131E	0.417	HMMPfam_Mitofilin	HMMPfam_Mitofilin	-	no_errors
ITPKC	0	genome.wustl.edu	37	19	41231346	41231346	+	Splice_Site	SNP	T	T	G	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	19	41231346	41231346	T	G	SNP	ITPKC	NM_025194.2	human	genbank	58_37c	+1	reviewed	splice_site	c.1255+2	e2+2	1.000	-	-	-	no_errors
KCNT1	0	genome.wustl.edu	37	9	138669336	138669336	+	Silent	SNP	C	C	T	rs139958448	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	9	138669336	138669336	C	T	SNP	KCNT1	NM_020822.2	human	genbank	58_37c	+1	validated	silent	c.2502	p.I834	0.298	NULL	HMMPfam_BK_channel_a,HMMPfam_Ion_trans_2,superfamily_NAD(P)-bd,superfamily_SSF81324	-	no_errors
KCTD12	0	genome.wustl.edu	37	13	77460152	77460163	+	In_Frame_Del	DEL	CACCTGGCCCCC	CACCTGGCCCCC	-	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	CACCTGGCCCCC	CACCTGGCCCCC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	13	77460152	77460163	CACCTGGCCCCC	-	DEL	KCTD12	NM_138444.3	human	genbank	58_37c	-1	validated	in_frame_del	c.132_121	p.GGQV41in_frame_del	1.000:1.000:1.000:1.000:1.000:1.000:0.982:1.000:1.000:0.998:1.000:1.000	HMMSmart_BTB,HMMPfam_K_tetra,superfamily_BTB/POZ_fold	HMMSmart_BTB,HMMPfam_K_tetra,superfamily_BTB/POZ_fold	-	no_errors
LNX1	0	genome.wustl.edu	37	4	54374205	54374205	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	4	54374205	54374205	G	A	SNP	LNX1	NM_001126328.1	human	genbank	58_37c	-1	reviewed	silent	c.570	p.D190	0.250	NULL	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMSmart_SM00184,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_RING/U-box	-	no_errors
LOC100130353	0	genome.wustl.edu	37	11	119274441	119274441	+	RNA	SNP	A	A	T	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	11	119274441	119274441	A	T	SNP	LOC100130353	XR_078444.1	human	genbank	58_37c	+1	model	rna	NULL	NULL	0.069	-	-	-	no_errors
LOC100287543	0	genome.wustl.edu	37	10	16859238	16859239	+	Frame_Shift_Ins	INS	-	-	GGGGTAGGGCAGG	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	10	16859238	16859239	-	GGGGTAGGGCAGG	INS	LOC100287543	XM_002342962.1	human	genbank	58_37c	+1	model	frame_shift_ins	c.247_248	p.S84fs	0.000:0.000	NULL	NULL	-	no_errors
LOC646817	0	genome.wustl.edu	37	1	92540130	92540132	+	In_Frame_Del	DEL	TCA	TCA	-	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	TCA	TCA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	1	92540130	92540132	TCA	-	DEL	LOC646817	XM_929774.4	human	genbank	58_37c	-1	model	in_frame_del	c.869_867	p.D289in_frame_del	1.000:1.000:0.987	NULL	HMMPfam_NAP	-	no_errors
MIR10B	0	genome.wustl.edu	37	2	177015045	177015045	+	RNA	SNP	G	G	A	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	2	177015045	177015045	G	A	SNP	MIR10B	ENST00000385011	human	ensembl	58_37c	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors
MLL3	0	genome.wustl.edu	37	7	151970951	151970951	+	Missense_Mutation	SNP	C	C	T	rs2951027	byFrequency	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	7	151970951	151970951	C	T	SNP	MLL3	NM_170606.2	human	genbank	58_37c	-1	reviewed	missense	c.851	p.R284Q	1.000	HMMSmart_SM00249	PatternScan_HMGI_Y,HMMPfam_HMG_box,HMMSmart_SM00398,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00184,HMMSmart_SM00249,HMMSmart_SM00508,HMMPfam_FYRN,HMMPfam_FYRC,superfamily_FYVE/PHD zinc finger,HMMPfam_AT_hook,HMMSmart_SM00542,HMMSmart_SM00541,PatternScan_ZF_PHD_1,HMMPfam_PHD,PatternScan_ATPASE_ALPHA_BETA,superfamily_SET domain	-	no_errors
MORC4	0	genome.wustl.edu	37	X	106184859	106184877	+	Frame_Shift_Del	DEL	AGCCCTGTATGAAGGAGTG	AGCCCTGTATGAAGGAGTG	-	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	AGCCCTGTATGAAGGAGTG	AGCCCTGTATGAAGGAGTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	X	106184859	106184877	AGCCCTGTATGAAGGAGTG	-	DEL	MORC4	NM_024657.4	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.2664_2661	p.R887fs	1.000:1.000:1.000:1.000	NULL	HMMPfam_HATPase_c,HMMSmart_HATPase_c,superfamily_ATP_bd_ATPase,HMMPfam_zf-CW	-	no_errors
MT-CYB	0	genome.wustl.edu	37	MT	15699	15699	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	MT	15699	15699	G	A	SNP	MT-CYB	ENST00000361789	human	ensembl	58_37c	+1	known	missense	c.953	p.R318H	NULL	HMMPfam_Cytochrom_B_C,superfamily_Cytochrome_b/b6_C	HMMPfam_Cytochrom_B_N,HMMPfam_Cytochrom_B_C,superfamily_Cytochrome_b/b6_C,superfamily_Transmembr_di-haem_cytochrome	-	no_stop_codon:bad_bp_length_for_coding_region:mismatch_between_exon_seq_and_reference
MUC3A	0	genome.wustl.edu	37	7	100550032	100550033	+	In_Frame_Ins	INS	-	-	CCT	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	7	100550032	100550033	-	CCT	INS	MUC3A	XM_001725354.2	human	genbank	58_37c	+1	model	in_frame_ins	c.613_614	p.208in_frame_insS	0.165:0.003	NULL	HMMPfam_SEA,HMMSmart_SM00200,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_EGF/Laminin,superfamily_SEA domain	-	no_errors
MYO18B	0	genome.wustl.edu	37	22	26164633	26164633	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	22	26164633	26164633	C	T	SNP	MYO18B	NM_032608.5	human	genbank	58_37c	+1	reviewed	silent	c.750	p.T250	0.119	NULL	HMMPfam_IQ,HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
MYO1A	0	genome.wustl.edu	37	12	57441140	57441140	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	12	57441140	57441140	T	C	SNP	MYO1A	NM_005379.2	human	genbank	58_37c	-1	reviewed	missense	c.377	p.E126G	1.000	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540	HMMPfam_IQ,HMMSmart_IQ,HMMPfam_Myosin_head,HMMSmart_MYSc,HMMPfam_Myosin_TH1,superfamily_SSF52540	-	no_errors
NBEAL1	0	genome.wustl.edu	37	2	203992635	203992635	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	2	203992635	203992635	T	C	SNP	NBEAL1	NM_001114132.1	human	genbank	58_37c	+1	validated	missense	c.3293	p.I1098T	1.000	NULL	HMMPfam_Beach,superfamily_BEACH domain,HMMSmart_SM00320,PatternScan_5_NUCLEOTIDASE_1,superfamily_WD40 repeat-like,superfamily_ARM repeat,HMMPfam_WD40,superfamily_PH domain-like	-	no_errors
NBPF1	0	genome.wustl.edu	37	1	16893784	16893784	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	1	16893784	16893784	C	A	SNP	NBPF1	NM_017940.3	human	genbank	58_37c	-1	predicted	missense	c.2729	p.C910F	0.004	HMMPfam_DUF1220	HMMPfam_DUF1220	-	no_errors
NCR1	0	genome.wustl.edu	37	19	55424424	55424426	+	RNA	DEL	TTT	TTT	-	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	TTT	TTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	19	55424424	55424426	TTT	-	DEL	NCR1	NR_027041.1	human	genbank	58_37c	+1	validated	rna	NULL	NULL	0.000:0.000:0.000	-	-	-	no_errors
NUAK1	0	genome.wustl.edu	37	12	106461184	106461184	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	12	106461184	106461184	G	A	SNP	NUAK1	NM_014840.2	human	genbank	58_37c	-1	validated	missense	c.1382	p.T461M	0.984	NULL	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
OR1A2	0	genome.wustl.edu	37	17	3101122	3101122	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	17	3101122	3101122	A	T	SNP	OR1A2	NM_012352.1	human	genbank	58_37c	+1	provisional	missense	c.310	p.M104L	0.883	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
OR2T1	0	genome.wustl.edu	37	1	248570049	248570049	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	1	248570049	248570049	T	A	SNP	OR2T1	NM_030904.1	human	genbank	58_37c	+1	provisional	missense	c.754	p.C252S	0.964	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
OR2T29	0	genome.wustl.edu	37	1	248722668	248722668	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	1	248722668	248722668	G	A	SNP	OR2T29	NM_001004694.1	human	genbank	58_37c	-1	provisional	missense	c.107	p.A36V	0.001	superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
OR8D1	0	genome.wustl.edu	37	11	124180486	124180486	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	11	124180486	124180486	C	G	SNP	OR8D1	NM_001002917.1	human	genbank	58_37c	-1	provisional	missense	c.177	p.M59I	1.000	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
PACSIN2	0	genome.wustl.edu	37	22	43287157	43287157	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	22	43287157	43287157	C	G	SNP	PACSIN2	NM_007229.3	human	genbank	58_37c	-1	reviewed	missense	c.249	p.W83C	1.000	HMMPfam_FCH,HMMSmart_SM00055	HMMPfam_FCH,HMMSmart_SM00055,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain	-	no_errors
PADI1	0	genome.wustl.edu	37	1	17548919	17548919	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	1	17548919	17548919	T	A	SNP	PADI1	NM_013358.2	human	genbank	58_37c	+1	reviewed	missense	c.227	p.M76K	0.034	superfamily_Cupredoxins,HMMPfam_PAD_N	superfamily_Cupredoxins,HMMPfam_PAD,HMMPfam_PAD_N,HMMPfam_PAD_M,superfamily_Peptidylarginine deiminase Pad4 middle domain,superfamily_Pentein	-	no_errors
PAH	0	genome.wustl.edu	37	12	103288660	103288660	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	12	103288660	103288660	G	A	SNP	PAH	ENST00000307000	human	ensembl	58_37c	-1	known	missense	c.205	p.P69S	1.000	HMMPfam_ACT,superfamily_SSF55021	HMMPfam_ACT,PatternScan_BIOPTERIN_HYDROXYL,HMMPfam_Biopterin_H,superfamily_Aaa_hydroxylase,superfamily_SSF55021	-	no_errors
PCDHB16	0	genome.wustl.edu	37	5	140564371	140564371	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	5	140564371	140564371	C	T	SNP	PCDHB16	NM_020957.1	human	genbank	58_37c	+1	reviewed	missense	c.2237	p.S746F	0.953	NULL	HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin	-	no_errors
PHF20	0	genome.wustl.edu	37	20	34528959	34528959	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	20	34528959	34528959	G	A	SNP	PHF20	NM_016436.4	human	genbank	58_37c	+1	validated	silent	c.2886	p.K962	1.000	NULL	HMMSmart_SM00249,HMMSmart_SM00333,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD,superfamily_Tudor/PWWP/MBT	-	no_errors
PMFBP1	0	genome.wustl.edu	37	16	72166723	72166723	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	16	72166723	72166723	C	T	SNP	PMFBP1	NM_031293.2	human	genbank	58_37c	-1	validated	silent	c.1371	p.E457	0.006	NULL	NULL	-	no_errors
PRDM14	0	genome.wustl.edu	37	8	70981582	70981589	+	Frame_Shift_Del	DEL	AAGGTAAT	AAGGTAAT	-	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	AAGGTAAT	AAGGTAAT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	8	70981582	70981589	AAGGTAAT	-	DEL	PRDM14	NM_024504.2	human	genbank	58_37c	-1	validated	frame_shift_del	c.514_507	p.P171fs	0.000:0.000:0.001:0.000:0.000:0.001:0.001:0.000	NULL	HMMSmart_SET,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667,superfamily_SSF82199	-	no_errors
PTPRJ	0	genome.wustl.edu	37	11	48149442	48149442	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	11	48149442	48149442	C	T	SNP	PTPRJ	NM_002843.3	human	genbank	58_37c	+1	reviewed	missense	c.1204	p.H402Y	0.003	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like	HMMPfam_Y_phosphatase,HMMSmart_PTPc,HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like,PatternScan_TYR_PHOSPHATASE_1,superfamily_SSF52799	-	no_errors
QTRTD1	0	genome.wustl.edu	37	3	113785093	113785093	+	Silent	SNP	C	C	G	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	3	113785093	113785093	C	G	SNP	QTRTD1	NM_024638.2	human	genbank	58_37c	+1	provisional	silent	c.219	p.V73	1.000	superfamily_tRNA_ribo_trans	HMMPfam_TGT,superfamily_tRNA_ribo_trans	-	no_errors
RAB11FIP1	0	genome.wustl.edu	37	8	37720609	37720609	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	8	37720609	37720609	G	C	SNP	RAB11FIP1	NM_001002814.2	human	genbank	58_37c	-1	validated	missense	c.3656	p.A1219G	0.970	NULL	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_RBD-FIP	-	no_errors
RAD54B	0	genome.wustl.edu	37	8	95399325	95399325	+	Silent	SNP	T	T	C	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	8	95399325	95399325	T	C	SNP	RAD54B	NM_012415.2	human	genbank	58_37c	-1	reviewed	silent	c.1872	p.L624	0.000	NULL	HMMPfam_SNF2_N,HMMPfam_Helicase_C,HMMSmart_HELICc,HMMSmart_DEXDc,superfamily_SSF52540	-	no_errors
RNF160	0	genome.wustl.edu	37	21	30331787	30331787	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	21	30331787	30331787	A	C	SNP	RNF160	NM_015565.2	human	genbank	58_37c	-1	validated	missense	c.2586	p.H862Q	0.406	superfamily_ARM repeat	HMMSmart_SM00744,superfamily_ARM repeat,HMMPfam_zf-C3HC4,superfamily_RING/U-box	-	no_errors
RSPH6A	0	genome.wustl.edu	37	19	46299287	46299287	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	19	46299287	46299287	A	C	SNP	RSPH6A	NM_030785.3	human	genbank	58_37c	-1	reviewed	missense	c.1994	p.I665S	0.587	HMMPfam_Radial_spoke	HMMPfam_Radial_spoke	-	no_errors
SDK1	0	genome.wustl.edu	37	7	4285355	4285355	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	7	4285355	4285355	A	G	SNP	SDK1	NM_152744.3	human	genbank	58_37c	+1	validated	missense	c.6299	p.D2100G	1.000	NULL	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
SH3BP4	0	genome.wustl.edu	37	2	235950855	235950855	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	2	235950855	235950855	C	G	SNP	SH3BP4	NM_014521.2	human	genbank	58_37c	+1	reviewed	missense	c.1442	p.P481R	1.000	NULL	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_SH3_2	-	no_errors
SIK2	0	genome.wustl.edu	37	11	111594680	111594680	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	11	111594680	111594680	G	A	SNP	SIK2	NM_015191.1	human	genbank	58_37c	+1	validated	missense	c.2608	p.D870N	1.000	NULL	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
SLC6A3	0	genome.wustl.edu	37	5	1406352	1406352	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	5	1406352	1406352	C	G	SNP	SLC6A3	NM_001044.4	human	genbank	58_37c	-1	reviewed	missense	c.1550	p.S517T	1.000	HMMPfam_SNF	HMMPfam_SNF,PatternScan_NA_NEUROTRAN_SYMP_1,PatternScan_NA_NEUROTRAN_SYMP_2	-	no_errors
SLC7A4	0	genome.wustl.edu	37	22	21385708	21385708	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	22	21385708	21385708	C	T	SNP	SLC7A4	NM_004173.2	human	genbank	58_37c	-1	validated	missense	c.394	p.A132T	0.978	HMMPfam_AA_permease	HMMPfam_AA_permease	-	no_errors
SOAT1	0	genome.wustl.edu	37	1	179308636	179308636	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	1	179308636	179308636	C	T	SNP	SOAT1	NM_003101.4	human	genbank	58_37c	+1	provisional	silent	c.453	p.L151	1.000	NULL	HMMPfam_MBOAT	-	no_errors
TOP1MT	0	genome.wustl.edu	37	8	144400190	144400190	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	8	144400190	144400190	T	G	SNP	TOP1MT	NM_052963.1	human	genbank	58_37c	-1	reviewed	missense	c.1213	p.T405P	0.998	superfamily_DNA_brk_join_enz,HMMSmart_TOPEUc,HMMPfam_Topoisom_I	HMMPfam_Topoisom_I_N,superfamily_TopoI_DNA_bd_euk,superfamily_Topismrse_insert,superfamily_DNA_brk_join_enz,HMMSmart_TOPEUc,HMMPfam_Topoisom_I,PatternScan_TOPOISOMERASE_I_EUK	-	no_errors
TP53	0	genome.wustl.edu	37	17	7578554	7578554	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	17	7578554	7578554	A	T	SNP	TP53	NM_000546.4	human	genbank	58_37c	-1	reviewed	missense	c.376	p.Y126N	1.000	superfamily_p53-like transcription factors,HMMPfam_P53	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
TPD52L2	0	genome.wustl.edu	37	20	62520553	62520553	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	20	62520553	62520553	A	C	SNP	TPD52L2	NM_199360.1	human	genbank	58_37c	+1	validated	missense	c.556	p.T186P	0.962	HMMPfam_TPD52	HMMPfam_TPD52	-	no_errors
TPSB2	0	genome.wustl.edu	37	16	1279650	1279650	+	Silent	SNP	G	G	C	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	16	1279650	1279650	G	C	SNP	TPSB2	NM_024164.5	human	genbank	58_37c	-1	reviewed	silent	c.150	p.V50	0.000	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases,PatternScan_TRYPSIN_HIS	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
TRHDE	0	genome.wustl.edu	37	12	72956000	72956000	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	12	72956000	72956000	C	T	SNP	TRHDE	NM_013381.2	human	genbank	58_37c	+1	reviewed	missense	c.1709	p.T570I	1.000	superfamily_SSF55486	PatternScan_ZINC_PROTEASE,HMMPfam_Peptidase_M1,superfamily_SSF55486,superfamily_SSF63737	-	no_errors
TRIM52	0	genome.wustl.edu	37	5	180687133	180687133	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	5	180687133	180687133	A	C	SNP	TRIM52	NM_032765.2	human	genbank	58_37c	-1	provisional	missense	c.682	p.F228V	0.002	HMMPfam_zf-B_box,HMMSmart_BBOX,superfamily_SSF57850	HMMPfam_zf-B_box,HMMSmart_BBOX,HMMSmart_RING,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_SSF57850	-	no_errors
TRIM67	0	genome.wustl.edu	37	1	231335936	231335936	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	1	231335936	231335936	C	T	SNP	TRIM67	NM_001004342.3	human	genbank	58_37c	+1	validated	nonsense	c.1306	p.Q436*	1.000	HMMSmart_SM00502	HMMPfam_zf-B_box,HMMSmart_SM00336,HMMSmart_SM00184,HMMSmart_SM00502,HMMPfam_SPRY,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,superfamily_Concanavalin A-like lectins/glucanases,PatternScan_ZF_RING_1,HMMSmart_SM00449,HMMPfam_zf-C3HC4,superfamily_B-box zinc-binding domain,superfamily_RING/U-box	-	no_errors
TSHZ3	0	genome.wustl.edu	37	19	31769775	31769775	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	19	31769775	31769775	G	A	SNP	TSHZ3	NM_020856.2	human	genbank	58_37c	-1	validated	silent	c.924	p.P308	0.966	NULL	HMMPfam_Homeobox,HMMSmart_HOX,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Homeodomain_like,HMMSmart_ZnF_C2H2,PatternScan_HOMEOBOX_1	-	no_errors
USH2A	0	genome.wustl.edu	37	1	215847722	215847722	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	1	215847722	215847722	C	A	SNP	USH2A	NM_206933.2	human	genbank	58_37c	-1	reviewed	missense	c.13531	p.A4511S	1.000	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III	HMMSmart_SM00282,HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,HMMPfam_fn3,HMMSmart_SM00060,HMMSmart_SM00560,HMMPfam_Laminin_N,HMMSmart_SM00136,superfamily_Fibronectin type III,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,PatternScan_EGF_1,superfamily_EGF/Laminin	-	no_errors
VPS26B	0	genome.wustl.edu	37	11	134115368	134115368	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	11	134115368	134115368	G	A	SNP	VPS26B	NM_052875.3	human	genbank	58_37c	+1	validated	missense	c.895	p.V299I	1.000	NULL	HMMPfam_Vps26	-	no_errors
YLPM1	0	genome.wustl.edu	37	14	75248373	75248373	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	14	75248373	75248373	C	A	SNP	YLPM1	NM_019589.2	human	genbank	58_37c	+1	validated	missense	c.1627	p.P543T	1.000	NULL	HMMPfam_YLP,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ZBTB11	0	genome.wustl.edu	37	3	101370349	101370349	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	3	101370349	101370349	C	T	SNP	ZBTB11	NM_014415.3	human	genbank	58_37c	-1	validated	silent	c.2823	p.V941	1.000	superfamily_SSF57667	HMMSmart_BTB,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
ZFAT	0	genome.wustl.edu	37	8	135622886	135622886	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	8	135622886	135622886	T	C	SNP	ZFAT	NM_020863.3	human	genbank	58_37c	-1	reviewed	missense	c.461	p.D154G	0.999	NULL	PatternScan_SUGAR_TRANSPORT_1,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZFHX3	0	genome.wustl.edu	37	16	72830766	72830766	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	16	72830766	72830766	C	G	SNP	ZFHX3	NM_006885.3	human	genbank	58_37c	-1	reviewed	missense	c.5815	p.D1939H	1.000	NULL	HMMPfam_Homeobox,HMMSmart_SM00389,HMMSmart_SM00451,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Homeodomain-like,HMMSmart_SM00355,PatternScan_HOMEOBOX_1,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF208	0	genome.wustl.edu	37	19	22171632	22171632	+	Nonsense_Mutation	SNP	A	A	C	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	19	22171632	22171632	A	C	SNP	ZNF208	NM_007153.3	human	genbank	58_37c	-1	provisional	nonsense	c.83	p.L28*	0.007	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF48695,superfamily_SSF57667	-	no_errors
ZNF219	0	genome.wustl.edu	37	14	21560535	21560535	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	14	21560535	21560535	G	A	SNP	ZNF219	NM_001101672.1	human	genbank	58_37c	-1	validated	silent	c.921	p.C307	0.981	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
ZNF263	0	genome.wustl.edu	37	16	3339518	3339518	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	16	3339518	3339518	C	T	SNP	ZNF263	NM_005741.4	human	genbank	58_37c	+1	validated	missense	c.1012	p.H338Y	0.236	NULL	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_SCAN,HMMSmart_SM00431,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF568	0	genome.wustl.edu	37	19	37427682	37427682	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-D8-A1XW-01A-11D-A14K-09	TCGA-D8-A1XW-10A-01D-A14K-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f29405cc-d712-4562-ac02-ca3c89fb82af	df416cf7-8ddc-4ee0-b925-78a7e849ad84	19	37427682	37427682	T	A	SNP	ZNF568	NM_198539.2	human	genbank	58_37c	+1	validated	missense	c.170	p.L57H	0.987	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
