Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ANK2	0	genome.wustl.edu	37	4	114158316	114158316	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	4	114158316	114158316	C	T	SNP	ANK2	NM_001148.4	human	genbank	58_37c	+1	reviewed	silent	c.657	p.D219	0.994	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK	HMMPfam_Death,HMMSmart_DEATH,HMMPfam_ZU5,HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK,superfamily_DEATH_like,PatternScan_ALDEHYDE_DEHYDR_GLU	-	no_errors
AZI2	0	genome.wustl.edu	37	3	28381965	28381965	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	3	28381965	28381965	G	C	SNP	AZI2	NM_022461.3	human	genbank	58_37c	-1	validated	missense	c.144	p.I48M	1.000	NULL	NULL	-	no_errors
C5orf22	0	genome.wustl.edu	37	5	31545752	31545752	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	5	31545752	31545752	G	A	SNP	C5orf22	NM_018356.2	human	genbank	58_37c	+1	validated	splice_site	c.993-1	e7-1	1.000	-	-	-	no_errors
CAD	0	genome.wustl.edu	37	2	27447710	27447710	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	2	27447710	27447710	A	G	SNP	CAD	NM_004341.3	human	genbank	58_37c	+1	reviewed	missense	c.1352	p.Y451C	1.000	HMMPfam_CPSase_L_chain,superfamily_PreATP-grasp-like	HMMPfam_GATase,PatternScan_DIHYDROOROTASE_1,PatternScan_DIHYDROOROTASE_2,HMMPfam_CPSase_sm_chain,superfamily_CP_synthsmall,HMMPfam_CPSase_L_D2,PatternScan_CPSASE_1,PatternScan_CPSASE_2,HMMPfam_CPSase_L_D3,superfamily_CarbamoylP_synth_lsu_oligo,HMMPfam_CPSase_L_chain,PatternScan_CARBAMOYLTRANSFERASE,superfamily_Asp/Orn_carbamoyltranf,HMMPfam_OTCace,HMMPfam_OTCace_N,HMMPfam_Amidohydro_1,superfamily_Metalo_hydrolase,HMMPfam_MGS,superfamily_PreATP-grasp-like,superfamily_SSF51556,superfamily_SSF52317,superfamily_SSF52335,superfamily_SSF56059	-	no_errors
CDH7	0	genome.wustl.edu	37	18	63547657	63547657	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	18	63547657	63547657	A	G	SNP	CDH7	NM_004361.2	human	genbank	58_37c	+1	reviewed	missense	c.1885	p.T629A	1.000	NULL	HMMPfam_Cadherin_C,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like	-	no_errors
FAM131B	0	genome.wustl.edu	37	7	143056010	143056010	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	7	143056010	143056010	G	C	SNP	FAM131B	NM_001031690.2	human	genbank	58_37c	-1	validated	missense	c.376	p.Q126E	1.000	NULL	NULL	-	no_errors
FOXP1	0	genome.wustl.edu	37	3	71021818	71021818	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	3	71021818	71021818	G	A	SNP	FOXP1	NM_032682.4	human	genbank	58_37c	-1	reviewed	missense	c.1540	p.R514C	1.000	"HMMPfam_Fork_head,HMMSmart_SM00339,PatternScan_FORK_HEAD_2,superfamily_""Winged helix"" DNA-binding domain"	"HMMPfam_Fork_head,HMMSmart_SM00339,PatternScan_ZINC_FINGER_C2H2_1,PatternScan_FORK_HEAD_2,superfamily_""Winged helix"" DNA-binding domain"	-	no_errors
FRMPD4	0	genome.wustl.edu	37	X	12736552	12736552	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	X	12736552	12736552	C	A	SNP	FRMPD4	NM_014728.3	human	genbank	58_37c	+1	reviewed	missense	c.3607	p.Q1203K	1.000	NULL	PatternScan_WW_DOMAIN_1,HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,PatternScan_FERM_1,PatternScan_FERM_2,HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41	-	no_errors
FSIP2	0	genome.wustl.edu	37	2	186625798	186625798	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	2	186625798	186625798	G	A	SNP	FSIP2	ENST00000424728	human	ensembl	58_37c	+1	known	missense	c.1162	p.A388T	0.000	NULL	NULL	-	no_errors
GREB1L	0	genome.wustl.edu	37	18	19088425	19088425	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	18	19088425	19088425	C	T	SNP	GREB1L	NM_001142966.1	human	genbank	58_37c	+1	provisional	silent	c.4608	p.H1536	0.998	NULL	PatternScan_ASP_PROTEASE	-	no_errors
HS6ST1	0	genome.wustl.edu	37	2	129075877	129075877	+	Missense_Mutation	SNP	G	G	T	rs61738292	byFrequency	TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	2	129075877	129075877	G	T	SNP	HS6ST1	NM_004807.2	human	genbank	58_37c	-1	reviewed	missense	c.261	p.D87E	1.000	HMMPfam_HS6ST	HMMPfam_HS6ST	-	no_errors
KDM3A	0	genome.wustl.edu	37	2	86709187	86709187	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	2	86709187	86709187	G	A	SNP	KDM3A	NM_018433.5	human	genbank	58_37c	+1	reviewed	missense	c.2647	p.G883S	1.000	NULL	HMMSmart_SM00558,HMMPfam_JmjC,superfamily_Clavaminate synthase-like	-	no_errors
KIAA1310	0	genome.wustl.edu	37	2	97268573	97268573	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	2	97268573	97268573	G	C	SNP	KIAA1310	NM_001115016.1	human	genbank	58_37c	-1	validated	missense	c.2176	p.Q726E	1.000	NULL	superfamily_SSF53474	-	no_errors
LOC729057	0	genome.wustl.edu	37	22	16123027	16123027	+	RNA	SNP	T	T	G	rs7292044	byFrequency	TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	22	16123027	16123027	T	G	SNP	LOC729057	XR_042044.2	human	genbank	58_37c	+1	model	rna	NULL	NULL	1.000	-	-	-	no_errors
LRRC15	0	genome.wustl.edu	37	3	194080618	194080618	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	3	194080618	194080618	G	A	SNP	LRRC15	NM_001135057.2	human	genbank	58_37c	-1	validated	silent	c.1173	p.F391	0.002	HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00365,superfamily_L domain-like	HMMSmart_SM00082,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00364,HMMSmart_SM00365,superfamily_L domain-like	-	no_errors
LRRC15	0	genome.wustl.edu	37	3	194080750	194080750	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	3	194080750	194080750	C	T	SNP	LRRC15	NM_001135057.2	human	genbank	58_37c	-1	validated	silent	c.1041	p.T347	0.000	HMMSmart_SM00369,HMMSmart_SM00365,superfamily_L domain-like	HMMSmart_SM00082,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00364,HMMSmart_SM00365,superfamily_L domain-like	-	no_errors
MAP3K1	0	genome.wustl.edu	37	5	56180536	56180537	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	5	56180536	56180537	-	A	INS	MAP3K1	NM_005921.1	human	genbank	58_37c	+1	validated	frame_shift_ins	c.3865_3866	p.A1290fs	1.000:1.000	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase	HMMSmart_RING,HMMSmart_S_TKc,HMMPfam_SWIM,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,PatternScan_ZF_RING_1,superfamily_SSF57850	-	no_errors
MAP3K1	0	genome.wustl.edu	37	5	56180586	56180588	+	In_Frame_Del	DEL	CAT	CAT	-	novel	unknown	TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	CAT	CAT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	5	56180586	56180588	CAT	-	DEL	MAP3K1	NM_005921.1	human	genbank	58_37c	+1	validated	in_frame_del	c.3915_3917	p.I1307in_frame_del	1.000:1.000:1.000	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase	HMMSmart_RING,HMMSmart_S_TKc,HMMPfam_SWIM,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,PatternScan_ZF_RING_1,superfamily_SSF57850	-	no_errors
MASP1	0	genome.wustl.edu	37	3	186953790	186953790	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	3	186953790	186953790	G	A	SNP	MASP1	NM_139125.3	human	genbank	58_37c	-1	reviewed	silent	c.1869	p.P623	0.005	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys	PatternScan_ASX_HYDROXYL,HMMPfam_Sushi,HMMSmart_CCP,HMMPfam_CUB,HMMSmart_CUB,superfamily_CUB,HMMPfam_Trypsin,HMMSmart_Tryp_SPc,HMMSmart_EGF_CA,superfamily_Pept_Ser_Cys,PatternScan_EGF_2,superfamily_Complement_control_module,PatternScan_EGF_CA,PatternScan_TRYPSIN_SER,superfamily_SSF57196	-	no_errors
MYST1	0	genome.wustl.edu	37	16	31141789	31141789	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	16	31141789	31141789	C	T	SNP	MYST1	NM_182958.2	human	genbank	58_37c	+1	validated	missense	c.1019	p.S340F	1.000	HMMPfam_MOZ_SAS,superfamily_Acyl-CoA N-acyltransferases (Nat)	HMMSmart_SM00298,HMMPfam_MOZ_SAS,superfamily_Acyl-CoA N-acyltransferases (Nat)	-	no_errors
NAV1	0	genome.wustl.edu	37	1	201772760	201772760	+	Nonsense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	1	201772760	201772760	C	G	SNP	NAV1	NM_020443.4	human	genbank	58_37c	+1	reviewed	nonsense	c.3557	p.S1186*	1.000	NULL	HMMSmart_AAA,PatternScan_PPASE,superfamily_SSF52540	-	no_errors
NEIL1	0	genome.wustl.edu	37	15	75641328	75641328	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	15	75641328	75641328	G	A	SNP	NEIL1	NM_024608.2	human	genbank	58_37c	+1	validated	missense	c.82	p.E28K	1.000	superfamily_N-terminal domain of MutM-like DNA repair proteins	superfamily_S13-like H2TH domain,HMMPfam_Fapy_DNA_glyco,superfamily_N-terminal domain of MutM-like DNA repair proteins,HMMPfam_Neil1-DNA_bind,HMMPfam_H2TH,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
NPAS1	0	genome.wustl.edu	37	19	47535538	47535538	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	19	47535538	47535538	C	T	SNP	NPAS1	NM_002517.2	human	genbank	58_37c	+1	reviewed	missense	c.361	p.P121S	0.980	NULL	HMMSmart_PAS,HMMPfam_HLH,HMMSmart_HLH,HMMSmart_PAC,superfamily_HLH_basic,HMMPfam_PAS_3,HMMPfam_PAS,superfamily_SSF55785	-	no_errors
OTUB1	0	genome.wustl.edu	37	11	63764394	63764394	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	11	63764394	63764394	T	C	SNP	OTUB1	NM_017670.2	human	genbank	58_37c	+1	reviewed	missense	c.404	p.I135T	1.000	HMMPfam_Peptidase_C65,superfamily_Cysteine proteinases	HMMPfam_Peptidase_C65,superfamily_Cysteine proteinases	-	no_errors
PAK3	0	genome.wustl.edu	37	X	110385364	110385364	+	Silent	SNP	T	T	A	novel	unknown	TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	X	110385364	110385364	T	A	SNP	PAK3	NM_001128168.1	human	genbank	58_37c	+1	reviewed	silent	c.216	p.L72	1.000	HMMPfam_PBD,HMMSmart_PBD	HMMPfam_PBD,HMMSmart_PBD,HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
PCDHGB6	0	genome.wustl.edu	37	5	140788421	140788421	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	5	140788421	140788421	G	A	SNP	PCDHGB6	NM_018926.2	human	genbank	58_37c	+1	reviewed	missense	c.652	p.G218R	1.000	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	rs104886003	byCluster	TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	3	178936091	178936091	G	A	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.1633	p.E545K	1.000	HMMPfam_PI3Ka,HMMSmart_PI3Ka,superfamily_ARM-type_fold	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
PPRC1	0	genome.wustl.edu	37	10	103908402	103908402	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	10	103908402	103908402	C	T	SNP	PPRC1	NM_015062.3	human	genbank	58_37c	+1	reviewed	missense	c.4568	p.S1523L	0.024	superfamily_RNA-binding domain RBD	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD	-	no_errors
PTEN	0	genome.wustl.edu	37	10	89624271	89624272	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	10	89624271	89624272	-	T	INS	PTEN	ENST00000371953	human	ensembl	58_37c	+1	known	frame_shift_ins	c.45_46	p.Y15fs	1.000:1.000	superfamily_(Phosphotyrosine protein) phosphatases II	HMMPfam_DSPc,HMMSmart_SM00404,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II	-	no_errors
RERE	0	genome.wustl.edu	37	1	8426006	8426006	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	1	8426006	8426006	C	T	SNP	RERE	NM_001042681.1	human	genbank	58_37c	-1	reviewed	nonsense	c.1313	p.W438*	1.000	HMMSmart_SM00717,superfamily_Homeodomain-like,HMMPfam_Myb_DNA-binding	HMMPfam_GATA,HMMSmart_SM00401,HMMPfam_ELM2,HMMSmart_SM00717,HMMPfam_BAH,HMMSmart_SM00439,HMMPfam_Atrophin-1,superfamily_Homeodomain-like,HMMPfam_Myb_DNA-binding,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
RHOT2	0	genome.wustl.edu	37	16	723516	723516	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	16	723516	723516	C	T	SNP	RHOT2	NM_138769.1	human	genbank	58_37c	+1	provisional	silent	c.1767	p.F589	1.000	NULL	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_EF_assoc_1,HMMPfam_EF_assoc_2,HMMPfam_Miro,PatternScan_EF_HAND_1,superfamily_EF-hand,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
SGK2	0	genome.wustl.edu	37	20	42195054	42195054	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	20	42195054	42195054	G	A	SNP	SGK2	NM_016276.3	human	genbank	58_37c	+1	reviewed	missense	c.99	p.M33I	0.000	NULL	HMMSmart_SM00133,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,HMMPfam_Pkinase_C	-	no_errors
TMEM184A	0	genome.wustl.edu	37	7	1586653	1586654	+	In_Frame_Ins	INS	-	-	GCC	novel	unknown	TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	7	1586653	1586654	-	GCC	INS	TMEM184A	NM_001097620.1	human	genbank	58_37c	-1	validated	in_frame_ins	c.1177_1176	p.392in_frame_insG	0.000:0.000	NULL	HMMPfam_DUF300	-	no_errors
TMPRSS6	0	genome.wustl.edu	37	22	37482397	37482397	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	22	37482397	37482397	G	A	SNP	TMPRSS6	NM_153609.2	human	genbank	58_37c	-1	reviewed	missense	c.926	p.A309V	0.972	superfamily_Spermadhesin CUB domain	superfamily_Spermadhesin CUB domain,HMMPfam_Trypsin,HMMSmart_SM00020,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_LDL receptor-like module,superfamily_Trypsin-like serine proteases,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER,superfamily_SEA domain	-	no_errors
TTC30B	0	genome.wustl.edu	37	2	178417084	178417084	+	Silent	SNP	T	T	C	novel	unknown	TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	2	178417084	178417084	T	C	SNP	TTC30B	NM_152517.2	human	genbank	58_37c	-1	validated	silent	c.408	p.V136	1.000	superfamily_TPR-like	HMMPfam_TPR_1,HMMPfam_TPR_2,HMMSmart_SM00028,superfamily_TPR-like	-	no_errors
ZNF254	0	genome.wustl.edu	37	19	24270126	24270126	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	19	24270126	24270126	G	A	SNP	ZNF254	NM_203282.2	human	genbank	58_37c	+1	validated	missense	c.17	p.R6K	0.004	superfamily_KRAB domain (Kruppel-associated box Pfam 01352)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF417	0	genome.wustl.edu	37	19	58423433	58423433	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	19	58423433	58423433	G	A	SNP	ZNF417	NM_152475.2	human	genbank	58_37c	-1	validated	missense	c.158	p.S53L	0.257	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF483	0	genome.wustl.edu	37	9	114290002	114290002	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A27L-01A-11D-A16D-09	TCGA-D8-A27L-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10666107-dffb-4c51-b3ee-71e70cde7c88	39acbfee-141d-4c6a-bf04-abb40344659f	9	114290002	114290002	G	A	SNP	ZNF483	NM_133464.2	human	genbank	58_37c	+1	validated	silent	c.327	p.R109	1.000	HMMPfam_SCAN,HMMSmart_SCAN	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_SCAN,HMMSmart_SCAN,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
