Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ACLY	47	genome.wustl.edu	37	17	40042364	40042364	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	17	40042364	40042364	C	T	SNP	ACLY	NM_001096.2	human	genbank	58_37c	-1	reviewed	splice_site	c.2072+1	e17+1	1.000	-	-	-	no_errors
BTNL8	79908	genome.wustl.edu	37	5	180377233	180377233	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	5	180377233	180377233	G	A	SNP	BTNL8	NM_001040462.2	human	genbank	58_37c	+1	validated	missense	c.1192	p.V398I	0.000	HMMPfam_SPRY,HMMSmart_SM00449	HMMSmart_SM00409,HMMPfam_SPRY,HMMSmart_SM00589,HMMPfam_V-set,HMMSmart_SM00449,superfamily_Immunoglobulin	-	no_errors
C7orf23	79161	genome.wustl.edu	37	7	86825961	86825961	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	7	86825961	86825961	C	T	SNP	C7orf23	NM_024315.2	human	genbank	58_37c	-1	provisional	silent	c.348	p.V116	1.000	NULL	NULL	-	no_errors
CABIN1	23523	genome.wustl.edu	37	22	24463095	24463095	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	22	24463095	24463095	C	-	DEL	CABIN1	NM_012295.2	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.2195	p.I733fs	0.996	superfamily_SSF48452	HMMPfam_TPR_1,HMMPfam_MEF2_binding,HMMSmart_TPR,superfamily_SSF48452	-	no_errors
CAST	831	genome.wustl.edu	37	5	96077234	96077234	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	5	96077234	96077234	A	T	SNP	CAST	NM_001750.5	human	genbank	58_37c	+1	reviewed	missense	c.1048	p.T350S	0.000	HMMPfam_Calpain_inhib	HMMPfam_Calpain_inhib	-	no_errors
CHD1	1105	genome.wustl.edu	37	5	98236686	98236686	+	Silent	SNP	T	T	G	novel	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	5	98236686	98236686	T	G	SNP	CHD1	NM_001270.2	human	genbank	58_37c	-1	reviewed	silent	c.688	p.R230	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_SNF2_N,HMMPfam_Chromo,HMMSmart_SM00298,PatternScan_CHROMO_1,HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_Homeodomain-like,HMMSmart_SM00487,superfamily_Chromo domain-like,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
COPA	1314	genome.wustl.edu	37	1	160261650	160261650	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	1	160261650	160261650	G	C	SNP	COPA	NM_001098398.1	human	genbank	58_37c	-1	reviewed	missense	c.3244	p.L1082V	1.000	HMMPfam_COPI_C	HMMSmart_WD40,HMMPfam_Coatomer_WDAD,superfamily_Calret_calnex_P,HMMPfam_COPI_C,superfamily_WD40_like,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
CUL7	9820	genome.wustl.edu	37	6	43014812	43014812	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	6	43014812	43014812	G	-	DEL	CUL7	NM_014780.4	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.2203	p.L735fs	1.000	NULL	HMMPfam_Cullin,HMMPfam_APC10,superfamily_Gal_bind_like,PatternScan_CULLIN_1,superfamily_Cullin_homology,superfamily_SSF46785	-	no_errors
CUL7	9820	genome.wustl.edu	37	6	43014815	43014822	+	Frame_Shift_Del	DEL	GGTGCAGG	GGTGCAGG	-	novel	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	GGTGCAGG	GGTGCAGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	6	43014815	43014822	GGTGCAGG	-	DEL	CUL7	NM_014780.4	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.2200_2193	p.F731fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	NULL	HMMPfam_Cullin,HMMPfam_APC10,superfamily_Gal_bind_like,PatternScan_CULLIN_1,superfamily_Cullin_homology,superfamily_SSF46785	-	no_errors
ECE1	1889	genome.wustl.edu	37	1	21546502	21546502	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	1	21546502	21546502	G	C	SNP	ECE1	NM_001397.2	human	genbank	58_37c	-1	reviewed	missense	c.2259	p.F753L	1.000	"HMMPfam_Peptidase_M13,superfamily_Metalloproteases (""zincins"") catalytic domain"	"PatternScan_ZINC_PROTEASE,HMMPfam_Peptidase_M13_N,HMMPfam_Peptidase_M13,superfamily_Metalloproteases (""zincins"") catalytic domain"	-	no_errors
ENSG00000237368	0	genome.wustl.edu	37	18	14156653	14156654	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	18	14156653	14156654	-	A	INS	NF1L5	ENST00000418350	human	ensembl	58_37c	-1	known	frame_shift_ins	c.92_91	p.C31fs	1.000:1.000	NULL	NULL	-	no_errors
ENSG00000244770	0	genome.wustl.edu	37	X	78618400	78618400	+	RNA	SNP	A	A	G	novel	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	X	78618400	78618400	A	G	SNP	ITM2A	NM_004867.4	human	genbank	58_37c	-1	reviewed	intronic	c.441+39	e3+39	0.005	-	-	-	no_errors
FAM66D	100132923	genome.wustl.edu	37	8	12037650	12037651	+	RNA	INS	-	-	AACA	novel	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	8	12037650	12037651	-	AACA	INS	FAM66D	XR_079501.1	human	genbank	58_37c	+1	model	rna	NULL	NULL	0.234:0.213	-	-	-	no_errors
FER1L6	654463	genome.wustl.edu	37	8	125047696	125047696	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	8	125047696	125047696	G	T	SNP	FER1L6	NM_001039112.2	human	genbank	58_37c	+1	validated	splice_site	c.2464+1	e18+1	1.000	-	-	-	no_errors
GPR179	440435	genome.wustl.edu	37	17	36491508	36491508	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	17	36491508	36491508	T	C	SNP	GPR179	NM_001004334.2	human	genbank	58_37c	-1	validated	missense	c.1372	p.I458V	0.834	HMMPfam_7tm_3	HMMSmart_EGF,HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_1,PatternScan_G_PROTEIN_RECEP_F3_2,PatternScan_G_PROTEIN_RECEP_F3_3	-	no_errors
GRB7	2886	genome.wustl.edu	37	17	37899253	37899253	+	Missense_Mutation	SNP	G	G	A	rs139622371	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	17	37899253	37899253	G	A	SNP	GRB7	NM_001030002.1	human	genbank	58_37c	+1	reviewed	missense	c.409	p.A137T	0.999	HMMPfam_RA,HMMSmart_SM00314	HMMPfam_RA,HMMSmart_SM00314,HMMPfam_SH2,HMMSmart_SM00252,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_BPS,superfamily_PH domain-like,superfamily_SH2 domain	-	no_errors
HMGB2	3148	genome.wustl.edu	37	4	174254765	174254765	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	4	174254765	174254765	T	A	SNP	HMGB2	NM_001130688.1	human	genbank	58_37c	-1	reviewed	missense	c.36	p.K12N	0.941	HMMSmart_SM00398,superfamily_HMG-box	HMMPfam_HMG_box,HMMSmart_SM00398,superfamily_HMG-box,PatternScan_HMG_BOX_1	-	no_errors
HNRNPH1	3187	genome.wustl.edu	37	5	179044055	179044055	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	5	179044055	179044055	A	T	SNP	HNRNPH1	NM_005520.2	human	genbank	58_37c	-1	reviewed	missense	c.1114	p.Y372N	1.000	NULL	HMMPfam_RRM_1,HMMSmart_SM00360,HMMPfam_zf-RNPHF,superfamily_RNA-binding domain RBD	-	no_errors
KIAA1755	85449	genome.wustl.edu	37	20	36869418	36869418	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	20	36869418	36869418	G	A	SNP	KIAA1755	NM_001029864.1	human	genbank	58_37c	-1	predicted	missense	c.1115	p.S372F	0.037	NULL	superfamily_Spectrin repeat	-	no_errors
KISS1R	84634	genome.wustl.edu	37	19	918593	918593	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	19	918593	918593	C	T	SNP	KISS1R	NM_032551.4	human	genbank	58_37c	+1	reviewed	silent	c.294	p.F98	1.000	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
LOC100288469	0	genome.wustl.edu	37	19	7570384	7570384	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	19	7570384	7570384	C	A	SNP	LOC100288469	XM_002344248.1	human	genbank	58_37c	-1	model	splice_site	c.176+1	e2+1	0.000	-	-	-	no_errors
LOC283685	0	genome.wustl.edu	37	15	23685786	23685786	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	15	23685786	23685786	G	A	SNP	LOC283685	XM_002343322.1	human	genbank	58_37c	-1	model	missense	c.1625	p.T542M	0.069	NULL	NULL	-	no_errors
LOXL3	84695	genome.wustl.edu	37	2	74762803	74762803	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	2	74762803	74762803	C	A	SNP	LOXL3	NM_032603.2	human	genbank	58_37c	-1	reviewed	missense	c.1328	p.G443V	1.000	HMMPfam_SRCR,HMMSmart_SR,superfamily_Srcr_receptor	HMMPfam_SRCR,PatternScan_SRCR_1,HMMPfam_Lysyl_oxidase,HMMSmart_SR,superfamily_Srcr_receptor,PatternScan_LYSYL_OXIDASE	-	no_errors
LRRC4B	94030	genome.wustl.edu	37	19	51021653	51021653	+	Silent	SNP	C	C	A	novel	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	19	51021653	51021653	C	A	SNP	LRRC4B	NM_001080457.1	human	genbank	58_37c	-1	provisional	silent	c.1317	p.T439	0.999	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726	HMMPfam_LRRNT,HMMSmart_LRRNT,HMMSmart_LRRCT,HMMPfam_LRR_1,HMMSmart_LRR_TYP,HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726,superfamily_SSF52058	-	no_errors
MAGEB1	4112	genome.wustl.edu	37	X	30268880	30268880	+	Silent	SNP	T	T	C	novel	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	X	30268880	30268880	T	C	SNP	MAGEB1	NM_002363.4	human	genbank	58_37c	+1	reviewed	silent	c.270	p.N90	0.000	NULL	HMMPfam_MAGE	-	no_errors
MAP3K1	4214	genome.wustl.edu	37	5	56160578	56160579	+	Frame_Shift_Del	DEL	CA	CA	-	novel	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	CA	CA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	5	56160578	56160579	CA	-	DEL	MAP3K1	NM_005921.1	human	genbank	58_37c	+1	validated	frame_shift_del	c.852_853	p.P286fs	1.000:1.000	NULL	HMMSmart_RING,HMMSmart_S_TKc,HMMPfam_SWIM,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,PatternScan_ZF_RING_1,superfamily_SSF57850	-	no_errors
MCCC1	56922	genome.wustl.edu	37	3	182817227	182817228	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	3	182817227	182817228	-	T	INS	MCCC1	NM_020166.3	human	genbank	58_37c	-1	reviewed	frame_shift_ins	c.2_1	p.M1fs	0.283:0.272	NULL	HMMPfam_Biotin_lipoyl,PatternScan_BIOTIN,HMMPfam_CPSase_L_D2,PatternScan_CPSASE_2,HMMPfam_CPSase_L_chain,HMMPfam_Biotin_carb_C,superfamily_Hybrid_motif,superfamily_Rudmnt_hyb_motif,superfamily_PreATP-grasp-like,superfamily_SSF56059	-	no_errors
MEF2A	4205	genome.wustl.edu	37	15	100173343	100173347	+	Frame_Shift_Del	DEL	CAAAT	CAAAT	-	novel	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	CAAAT	CAAAT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	15	100173343	100173347	CAAAT	-	DEL	MEF2A	NM_005587.2	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.19_23	p.Q7fs	1.000:1.000:1.000:1.000:1.000	HMMSmart_MADS,PatternScan_MADS_BOX_1,superfamily_TF_MADSbox	HMMPfam_SRF-TF,HMMSmart_MADS,PatternScan_MADS_BOX_1,superfamily_TF_MADSbox	-	no_errors
MSLNL	0	genome.wustl.edu	37	16	830767	830768	+	Frame_Shift_Ins	INS	-	-	CT	novel	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	16	830767	830768	-	CT	INS	MSLNL	NM_001025190.1	human	genbank	58_37c	-1	provisional	frame_shift_ins	c.234_233	p.V79fs	0.006:0.015	NULL	HMMPfam_Mesothelin	-	no_errors
MTOR	2475	genome.wustl.edu	37	1	11188177	11188177	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	1	11188177	11188177	T	A	SNP	MTOR	NM_004958.3	human	genbank	58_37c	-1	reviewed	missense	c.5917	p.I1973F	1.000	superfamily_ARM-type_fold	HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_FAT,HMMPfam_FATC,HMMPfam_Rapamycin_bind,superfamily_FRAP_FKBP12_bind,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF48452	-	no_errors
MUC4	4585	genome.wustl.edu	37	3	195509202	195509202	+	Silent	SNP	T	T	G	novel	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	3	195509202	195509202	T	G	SNP	MUC4	NM_018406.5	human	genbank	58_37c	-1	reviewed	silent	c.8865	p.T2955	0.003	NULL	HMMPfam_VWD,HMMSmart_SM00216,HMMPfam_NIDO,HMMSmart_SM00539,HMMPfam_AMOP,HMMSmart_SM00723,PatternScan_SUGAR_TRANSPORT_2,HMMSmart_SM00181,PatternScan_EGF_1,superfamily_EGF/Laminin	-	no_errors
NEK5	341676	genome.wustl.edu	37	13	52684534	52684534	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	13	52684534	52684534	T	C	SNP	NEK5	NM_199289.1	human	genbank	58_37c	-1	provisional	missense	c.409	p.S137G	1.000	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase	HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
OR10K1	391109	genome.wustl.edu	37	1	158435388	158435388	+	Missense_Mutation	SNP	G	G	A	rs148047665	byFrequency	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	1	158435388	158435388	G	A	SNP	OR10K1	NM_001004473.1	human	genbank	58_37c	+1	provisional	missense	c.37	p.V13I	0.853	superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
PCDHA3	56145	genome.wustl.edu	37	5	140182767	140182767	+	Missense_Mutation	SNP	C	C	T	rs17844261	byCluster;byFrequency;by1000genomes	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	5	140182767	140182767	C	T	SNP	PCDHA3	NM_018906.2	human	genbank	58_37c	+1	reviewed	missense	c.1985	p.T662M	0.995	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like	-	no_errors
PLEKHG5	57449	genome.wustl.edu	37	1	6529190	6529191	+	Frame_Shift_Del	DEL	CC	CC	-	novel	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	CC	CC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	1	6529190	6529191	CC	-	DEL	PLEKHG5	NM_198681.2	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.2392_2391	p.E798fs	0.943:0.975	NULL	HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_DH-domain,HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729	-	no_errors
RBM19	9904	genome.wustl.edu	37	12	114386694	114386694	+	Missense_Mutation	SNP	C	C	A	rs139661395	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	12	114386694	114386694	C	A	SNP	RBM19	NM_016196.3	human	genbank	58_37c	-1	reviewed	missense	c.1220	p.R407L	0.701	HMMPfam_RRM_1,HMMSmart_SM00360,HMMSmart_SM00361,superfamily_RNA-binding domain RBD	HMMPfam_RRM_1,HMMSmart_SM00360,HMMSmart_SM00361,superfamily_RNA-binding domain RBD	-	no_errors
SERPINA5	5104	genome.wustl.edu	37	14	95053768	95053768	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	14	95053768	95053768	C	A	SNP	SERPINA5	NM_000624.4	human	genbank	58_37c	+1	validated	missense	c.69	p.H23Q	0.000	superfamily_Serpins	HMMPfam_Serpin,HMMSmart_SM00093,PatternScan_SERPIN,superfamily_Serpins	-	no_errors
SLC35F3	148641	genome.wustl.edu	37	1	234367371	234367371	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	1	234367371	234367371	C	T	SNP	SLC35F3	NM_173508.2	human	genbank	58_37c	+1	provisional	silent	c.492	p.D164	0.993	NULL	HMMPfam_DUF6,superfamily_SSF103481	-	no_errors
SLC40A1	30061	genome.wustl.edu	37	2	190428601	190428601	+	Missense_Mutation	SNP	G	G	A	rs146240138	byCluster;byFrequency;by1000genomes	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	2	190428601	190428601	G	A	SNP	SLC40A1	NM_014585.5	human	genbank	58_37c	-1	reviewed	missense	c.1111	p.R371W	1.000	HMMPfam_FPN1,superfamily_MFS general substrate transporter	HMMPfam_FPN1,superfamily_MFS general substrate transporter	-	no_errors
SNORD83B	0	genome.wustl.edu	37	22	39711580	39711582	+	RNA	DEL	GCT	GCT	-	novel	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	GCT	GCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	22	39711580	39711582	GCT	-	DEL	RPL3	NM_000967.3	human	genbank	58_37c	-1	reviewed	intronic	c.502-22_502-20	e5-20	0.021:0.050:0.049	-	-	-	no_errors
SOAT1	6646	genome.wustl.edu	37	1	179310278	179310278	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	1	179310278	179310278	C	T	SNP	SOAT1	NM_003101.4	human	genbank	58_37c	+1	provisional	missense	c.613	p.H205Y	0.001	HMMPfam_MBOAT	HMMPfam_MBOAT	-	no_errors
STAG1	10274	genome.wustl.edu	37	3	136078054	136078054	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	3	136078054	136078054	G	A	SNP	STAG1	NM_005862.2	human	genbank	58_37c	-1	reviewed	missense	c.2872	p.R958C	0.998	NULL	HMMPfam_STAG,superfamily_ARM-type_fold	-	no_errors
TACSTD2	4070	genome.wustl.edu	37	1	59042071	59042071	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	1	59042071	59042071	A	C	SNP	TACSTD2	NM_002353.2	human	genbank	58_37c	-1	reviewed	missense	c.758	p.V253G	0.999	NULL	HMMPfam_Thyroglobulin_1,HMMSmart_TY,PatternScan_THYROGLOBULIN_1_1,superfamily_Thyroglobulin_1	-	no_errors
TCOF1	6949	genome.wustl.edu	37	5	149773041	149773041	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	5	149773041	149773041	C	T	SNP	TCOF1	NM_001135243.1	human	genbank	58_37c	+1	reviewed	missense	c.3707	p.A1236V	0.000	NULL	HMMPfam_Treacle,HMMSmart_SM00667	-	no_errors
UBE4B	10277	genome.wustl.edu	37	1	10205077	10205077	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	1	10205077	10205077	C	T	SNP	UBE4B	NM_001105562.1	human	genbank	58_37c	+1	reviewed	missense	c.2443	p.R815C	1.000	HMMPfam_Ufd2P_core	HMMPfam_U-box,HMMSmart_SM00504,HMMPfam_Ufd2P_core,superfamily_RING/U-box	-	no_errors
ZNF492	57615	genome.wustl.edu	37	19	22847203	22847203	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	19	22847203	22847203	G	A	SNP	ZNF492	NM_020855.2	human	genbank	58_37c	+1	validated	silent	c.732	p.K244	0.957	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
