Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ADRBK1	0	genome.wustl.edu	37	11	67050279	67050279	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1RB-01A-11D-A17G-09	TCGA-E9-A1RB-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ce0333c-deca-4199-a06c-ede43c5575fc	a4297226-b312-4048-b61f-58bfbc792aef	11	67050279	67050279	C	T	SNP	ADRBK1	NM_001619.3	human	genbank	58_37c	+1	reviewed	missense	c.1217	p.T406M	1.000	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase	HMMPfam_RGS,HMMSmart_RGS,HMMSmart_S_TK_X,HMMPfam_PH,HMMSmart_PH,HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,superfamily_Regulat_G_prot_signal_superfam,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,superfamily_SSF50729	-	no_errors
ANK3	0	genome.wustl.edu	37	10	61959967	61959967	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1RB-01A-11D-A17G-09	TCGA-E9-A1RB-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ce0333c-deca-4199-a06c-ede43c5575fc	a4297226-b312-4048-b61f-58bfbc792aef	10	61959967	61959967	G	A	SNP	ANK3	NM_020987.2	human	genbank	58_37c	-1	reviewed	missense	c.1411	p.H471Y	1.000	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK	HMMPfam_Death,HMMSmart_DEATH,HMMPfam_ZU5,HMMSmart_ZU5,HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK,superfamily_DEATH_like	-	no_errors
ATN1	0	genome.wustl.edu	37	12	7045892	7045906	+	In_Frame_Del	DEL	CAGCAGCAGCAGCAG	CAGCAGCAGCAGCAG	-	novel	unknown	TCGA-E9-A1RB-01A-11D-A17G-09	TCGA-E9-A1RB-10A-01D-A159-09	CAGCAGCAGCAGCAG	CAGCAGCAGCAGCAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ce0333c-deca-4199-a06c-ede43c5575fc	a4297226-b312-4048-b61f-58bfbc792aef	12	7045892	7045906	CAGCAGCAGCAGCAG	-	DEL	ATN1	NM_001007026.1	human	genbank	58_37c	+1	reviewed	in_frame_del	c.1462_1476	p.QQQQQ491in_frame_del	0.834:0.709:0.730:0.772:0.719:0.700:0.962:0.955:0.948:0.969:0.915:0.004:0.157:0.124:0.121	HMMPfam_Atrophin-1	HMMPfam_Atrophin-1	-	no_errors
BAZ2B	0	genome.wustl.edu	37	2	160304785	160304785	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1RB-01A-11D-A17G-09	TCGA-E9-A1RB-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ce0333c-deca-4199-a06c-ede43c5575fc	a4297226-b312-4048-b61f-58bfbc792aef	2	160304785	160304785	G	A	SNP	BAZ2B	NM_013450.2	human	genbank	58_37c	-1	validated	missense	c.470	p.S157L	1.000	NULL	HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain,HMMPfam_MBD,HMMSmart_SM00391,HMMSmart_SM00249,HMMPfam_DDT,superfamily_FYVE/PHD zinc finger,superfamily_DNA-binding domain,PatternScan_BROMODOMAIN_1,HMMSmart_SM00571,HMMPfam_PHD	-	no_errors
C3	0	genome.wustl.edu	37	19	6694484	6694484	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E9-A1RB-01A-11D-A17G-09	TCGA-E9-A1RB-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ce0333c-deca-4199-a06c-ede43c5575fc	a4297226-b312-4048-b61f-58bfbc792aef	19	6694484	6694484	C	G	SNP	C3	NM_000064.2	human	genbank	58_37c	-1	reviewed	missense	c.3112	p.G1038R	0.899	superfamily_Terpenoid cyclases/Protein prenyltransferases	HMMPfam_ANATO,HMMSmart_SM00104,PatternScan_ANAPHYLATOXIN_1,HMMPfam_A2M,HMMPfam_A2M_N,superfamily_Terpenoid cyclases/Protein prenyltransferases,superfamily_TIMP-like,HMMPfam_A2M_recep,superfamily_Alpha-macroglobulin receptor domain,HMMPfam_A2M_N_2,HMMPfam_A2M_comp,superfamily_Anaphylotoxins (complement system),HMMPfam_NTR,HMMSmart_SM00643,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN	-	no_errors
CFH	0	genome.wustl.edu	37	1	196711113	196711113	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E9-A1RB-01A-11D-A17G-09	TCGA-E9-A1RB-10A-01D-A159-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ce0333c-deca-4199-a06c-ede43c5575fc	a4297226-b312-4048-b61f-58bfbc792aef	1	196711113	196711113	A	G	SNP	CFH	NM_000186.3	human	genbank	58_37c	+1	reviewed	missense	c.3065	p.Y1022C	0.056	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain	-	no_errors
CNDP2	0	genome.wustl.edu	37	18	72173106	72173106	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1RB-01A-11D-A17G-09	TCGA-E9-A1RB-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ce0333c-deca-4199-a06c-ede43c5575fc	a4297226-b312-4048-b61f-58bfbc792aef	18	72173106	72173106	C	T	SNP	CNDP2	NM_018235.2	human	genbank	58_37c	+1	validated	missense	c.227	p.P76L	0.994	superfamily_SSF53187	PatternScan_ARGE_DAPE_CPG2_1,PatternScan_ARGE_DAPE_CPG2_2,HMMPfam_Peptidase_M20,HMMPfam_M20_dimer,superfamily_Peptidase_M20_dimer,superfamily_SSF53187	-	no_errors
ENSG00000152042	0	genome.wustl.edu	37	1	146055394	146055394	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E9-A1RB-01A-11D-A17G-09	TCGA-E9-A1RB-10A-01D-A159-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ce0333c-deca-4199-a06c-ede43c5575fc	a4297226-b312-4048-b61f-58bfbc792aef	1	146055394	146055394	A	G	SNP	ENSG00000152042	ENST00000479926	human	ensembl	58_37c	-1	known	missense	c.229	p.F77L	0.002	NULL	HMMPfam_DUF1220	-	no_errors
ENSG00000166007	0	genome.wustl.edu	37	11	55065574	55065574	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E9-A1RB-01A-11D-A17G-09	TCGA-E9-A1RB-10A-01D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ce0333c-deca-4199-a06c-ede43c5575fc	a4297226-b312-4048-b61f-58bfbc792aef	11	55065574	55065574	T	A	SNP	ENSG00000166007	ENST00000309470	human	ensembl	58_37c	-1	known	missense	c.172	p.T58S	0.786	superfamily_SSF57850	HMMPfam_zf-B_box,HMMSmart_RING,HMMPfam_SPRY,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_SSF57850	-	no_errors
ENSG00000198886	0	genome.wustl.edu	37	MT	11823	11823	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-E9-A1RB-01A-11D-A17G-09	TCGA-E9-A1RB-10A-01D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ce0333c-deca-4199-a06c-ede43c5575fc	a4297226-b312-4048-b61f-58bfbc792aef	MT	11823	11823	T	C	SNP	ENSG00000198886	ENST00000361381	human	ensembl	58_37c	+1	known	missense	c.1064	p.M355T	NULL	HMMPfam_Oxidored_q1	HMMPfam_Oxidored_q5_N,HMMPfam_Oxidored_q1	-	no_stop_codon:bad_bp_length_for_coding_region:mismatch_between_exon_seq_and_reference
GRIP2	0	genome.wustl.edu	37	3	14547146	14547146	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E9-A1RB-01A-11D-A17G-09	TCGA-E9-A1RB-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ce0333c-deca-4199-a06c-ede43c5575fc	a4297226-b312-4048-b61f-58bfbc792aef	3	14547146	14547146	C	A	SNP	GRIP2	NM_001080423.1	human	genbank	58_37c	-1	provisional	missense	c.2844	p.E948D	0.974	NULL	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like	-	no_errors
HIP1	0	genome.wustl.edu	37	7	75182834	75182834	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A1RB-01A-11D-A17G-09	TCGA-E9-A1RB-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ce0333c-deca-4199-a06c-ede43c5575fc	a4297226-b312-4048-b61f-58bfbc792aef	7	75182834	75182834	G	T	SNP	HIP1	NM_005338.4	human	genbank	58_37c	-1	reviewed	missense	c.2213	p.S738Y	0.875	NULL	HMMPfam_I_LWEQ,HMMSmart_SM00307,superfamily_ENTH/VHS domain,HMMPfam_ANTH,HMMSmart_SM00273,superfamily_ARM repeat,superfamily_I/LWEQ domain (Pfam 01608)	-	no_errors
IGKV1D-42	0	genome.wustl.edu	37	2	90229285	90229285	+	Silent	SNP	A	A	C	novel	unknown	TCGA-E9-A1RB-01A-11D-A17G-09	TCGA-E9-A1RB-10A-01D-A159-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ce0333c-deca-4199-a06c-ede43c5575fc	a4297226-b312-4048-b61f-58bfbc792aef	2	90229285	90229285	A	C	SNP	IGKV1D-42	ENST00000390278	human	ensembl	58_37c	+1	known	silent	c.105	p.A35	0.116	HMMPfam_V-set,superfamily_SSF48726	HMMSmart_IGv,HMMPfam_V-set,superfamily_SSF48726	-	no_stop_codon
KIR3DL1	0	genome.wustl.edu	37	19	55341436	55341436	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-E9-A1RB-01A-11D-A17G-09	TCGA-E9-A1RB-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ce0333c-deca-4199-a06c-ede43c5575fc	a4297226-b312-4048-b61f-58bfbc792aef	19	55341436	55341436	G	A	SNP	KIR3DL1	NM_013289.2	human	genbank	58_37c	+1	reviewed	splice_site	c.1158+1	e8+1	0.102	-	-	-	no_errors
KRTAP19-7	0	genome.wustl.edu	37	21	31933504	31933505	+	Frame_Shift_Del	DEL	CA	CA	-	novel	unknown	TCGA-E9-A1RB-01A-11D-A17G-09	TCGA-E9-A1RB-10A-01D-A159-09	CA	CA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ce0333c-deca-4199-a06c-ede43c5575fc	a4297226-b312-4048-b61f-58bfbc792aef	21	31933504	31933505	CA	-	DEL	KRTAP19-7	NM_181614.1	human	genbank	58_37c	-1	provisional	frame_shift_del	c.105_104	p.L35fs	0.984:0.952	NULL	NULL	-	no_errors
LCK	0	genome.wustl.edu	37	1	32745462	32745462	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E9-A1RB-01A-11D-A17G-09	TCGA-E9-A1RB-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ce0333c-deca-4199-a06c-ede43c5575fc	a4297226-b312-4048-b61f-58bfbc792aef	1	32745462	32745462	C	A	SNP	LCK	NM_001042771.1	human	genbank	58_37c	+1	reviewed	missense	c.1062	p.F354L	1.000	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)	HMMPfam_SH2,HMMSmart_SM00252,HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_TYR,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,superfamily_SH2 domain	-	no_errors
LOC100289581	0	genome.wustl.edu	37	10	135491006	135491006	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-E9-A1RB-01A-11D-A17G-09	TCGA-E9-A1RB-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ce0333c-deca-4199-a06c-ede43c5575fc	a4297226-b312-4048-b61f-58bfbc792aef	10	135491006	135491006	G	A	SNP	LOC100289581	XM_002343041.1	human	genbank	58_37c	+1	model	missense	c.617	p.R206Q	0.371	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like	-	pseudogene
LOC392335	0	genome.wustl.edu	37	9	66515038	66515038	+	RNA	SNP	G	T	T	novel	unknown	TCGA-E9-A1RB-01A-11D-A17G-09	TCGA-E9-A1RB-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ce0333c-deca-4199-a06c-ede43c5575fc	a4297226-b312-4048-b61f-58bfbc792aef	9	66515038	66515038	G	T	SNP	LOC392335	XR_037043.2	human	genbank	58_37c	+1	model	rna	NULL	NULL	0.903	-	-	-	pseudogene
LOC729915	0	genome.wustl.edu	37	5	34193720	34193721	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-E9-A1RB-01A-11D-A17G-09	TCGA-E9-A1RB-10A-01D-A159-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ce0333c-deca-4199-a06c-ede43c5575fc	a4297226-b312-4048-b61f-58bfbc792aef	5	34193720	34193721	-	T	INS	LOC729915	XM_001722873.2	human	genbank	58_37c	+1	model	frame_shift_ins	c.2653_2654	p.L888fs	0.053:0.053	NULL	NULL	-	no_errors
LOXL3	0	genome.wustl.edu	37	2	74761688	74761688	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1RB-01A-11D-A17G-09	TCGA-E9-A1RB-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ce0333c-deca-4199-a06c-ede43c5575fc	a4297226-b312-4048-b61f-58bfbc792aef	2	74761688	74761688	C	T	SNP	LOXL3	NM_032603.2	human	genbank	58_37c	-1	reviewed	missense	c.1793	p.R598H	1.000	HMMPfam_Lysyl_oxidase	HMMPfam_SRCR,PatternScan_SRCR_1,HMMPfam_Lysyl_oxidase,HMMSmart_SR,superfamily_Srcr_receptor,PatternScan_LYSYL_OXIDASE	-	no_errors
LPO	0	genome.wustl.edu	37	17	56344804	56344804	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E9-A1RB-01A-11D-A17G-09	TCGA-E9-A1RB-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ce0333c-deca-4199-a06c-ede43c5575fc	a4297226-b312-4048-b61f-58bfbc792aef	17	56344804	56344804	G	A	SNP	LPO	NM_006151.2	human	genbank	58_37c	+1	reviewed	silent	c.1788	p.K596	0.902	HMMPfam_An_peroxidase,superfamily_Peroxidase_super	HMMPfam_An_peroxidase,superfamily_Peroxidase_super,PatternScan_PEROXIDASE_1,PatternScan_PEROXIDASE_2	-	no_errors
NAT10	0	genome.wustl.edu	37	11	34160963	34160963	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E9-A1RB-01A-11D-A17G-09	TCGA-E9-A1RB-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ce0333c-deca-4199-a06c-ede43c5575fc	a4297226-b312-4048-b61f-58bfbc792aef	11	34160963	34160963	C	T	SNP	NAT10	NM_024662.2	human	genbank	58_37c	+1	validated	silent	c.2340	p.S780	1.000	NULL	HMMPfam_DUF699,HMMPfam_DUF1726,superfamily_Acyl-CoA N-acyltransferases (Nat)	-	no_errors
OR4E2	0	genome.wustl.edu	37	14	22133650	22133650	+	Silent	SNP	G	G	T	novel	unknown	TCGA-E9-A1RB-01A-11D-A17G-09	TCGA-E9-A1RB-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ce0333c-deca-4199-a06c-ede43c5575fc	a4297226-b312-4048-b61f-58bfbc792aef	14	22133650	22133650	G	T	SNP	OR4E2	NM_001001912.1	human	genbank	58_37c	+1	validated	silent	c.354	p.V118	1.000	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
PIGQ	0	genome.wustl.edu	37	16	624165	624165	+	Missense_Mutation	SNP	G	G	A	rs148273392	unknown	TCGA-E9-A1RB-01A-11D-A17G-09	TCGA-E9-A1RB-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ce0333c-deca-4199-a06c-ede43c5575fc	a4297226-b312-4048-b61f-58bfbc792aef	16	624165	624165	G	A	SNP	PIGQ	NM_148920.1	human	genbank	58_37c	+1	reviewed	missense	c.91	p.V31M	0.997	NULL	HMMPfam_Gpi1	-	no_errors
PRSS8	0	genome.wustl.edu	37	16	31144597	31144597	+	Silent	SNP	G	G	T	novel	unknown	TCGA-E9-A1RB-01A-11D-A17G-09	TCGA-E9-A1RB-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ce0333c-deca-4199-a06c-ede43c5575fc	a4297226-b312-4048-b61f-58bfbc792aef	16	31144597	31144597	G	T	SNP	PRSS8	NM_002773.3	human	genbank	58_37c	-1	reviewed	silent	c.216	p.G72	0.312	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors
PTPRT	0	genome.wustl.edu	37	20	41420080	41420080	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1RB-01A-11D-A17G-09	TCGA-E9-A1RB-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ce0333c-deca-4199-a06c-ede43c5575fc	a4297226-b312-4048-b61f-58bfbc792aef	20	41420080	41420080	C	T	SNP	PTPRT	NM_133170.3	human	genbank	58_37c	-1	reviewed	missense	c.241	p.G81R	1.000	HMMPfam_MAM,HMMSmart_SM00137,PatternScan_MAM_1	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMPfam_MAM,HMMSmart_SM00137,PatternScan_MAM_1,HMMSmart_SM00404,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,PatternScan_TYR_PHOSPHATASE_1,superfamily_Immunoglobulin,superfamily_(Phosphotyrosine protein) phosphatases II	-	no_errors
RNF113B	0	genome.wustl.edu	37	13	98828595	98828595	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E9-A1RB-01A-11D-A17G-09	TCGA-E9-A1RB-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ce0333c-deca-4199-a06c-ede43c5575fc	a4297226-b312-4048-b61f-58bfbc792aef	13	98828595	98828595	C	A	SNP	RNF113B	NM_178861.4	human	genbank	58_37c	-1	validated	missense	c.896	p.G299V	1.000	superfamily_SSF57850	HMMPfam_zf-CCCH,HMMSmart_ZnF_C3H1,HMMSmart_RING,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_SSF57850,superfamily_SSF90229	-	no_errors
SEMA6A	0	genome.wustl.edu	37	5	115783352	115783352	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E9-A1RB-01A-11D-A17G-09	TCGA-E9-A1RB-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ce0333c-deca-4199-a06c-ede43c5575fc	a4297226-b312-4048-b61f-58bfbc792aef	5	115783352	115783352	C	G	SNP	SEMA6A	NM_020796.3	human	genbank	58_37c	-1	validated	missense	c.2050	p.V684L	0.007	NULL	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain,HMMPfam_PSI,HMMSmart_SM00423,superfamily_Plexin repeat	-	no_errors
SMARCA1	0	genome.wustl.edu	37	X	128649967	128649967	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1RB-01A-11D-A17G-09	TCGA-E9-A1RB-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ce0333c-deca-4199-a06c-ede43c5575fc	a4297226-b312-4048-b61f-58bfbc792aef	X	128649967	128649967	G	A	SNP	SMARCA1	NM_003069.3	human	genbank	58_37c	-1	reviewed	missense	c.433	p.R145C	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_SNF2_N,HMMSmart_SM00717,HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_Homeodomain-like,HMMSmart_SM00487,HMMPfam_HAND,superfamily_HAND domain of the nucleosome remodeling ATPase ISWI,HMMPfam_SLIDE,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
STAT5A	0	genome.wustl.edu	37	17	40456393	40456393	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E9-A1RB-01A-11D-A17G-09	TCGA-E9-A1RB-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ce0333c-deca-4199-a06c-ede43c5575fc	a4297226-b312-4048-b61f-58bfbc792aef	17	40456393	40456393	C	T	SNP	STAT5A	NM_003152.3	human	genbank	58_37c	+1	reviewed	silent	c.1203	p.C401	0.988	superfamily_P53_like_DNA_bnd,HMMPfam_STAT_bind	HMMPfam_SH2,HMMSmart_SH2,superfamily_P53_like_DNA_bnd,HMMPfam_STAT_int,superfamily_STAT,HMMPfam_STAT_alpha,HMMPfam_STAT_bind,superfamily_SSF55550	-	no_errors
TMEM200C	0	genome.wustl.edu	37	18	5891633	5891633	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E9-A1RB-01A-11D-A17G-09	TCGA-E9-A1RB-10A-01D-A159-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ce0333c-deca-4199-a06c-ede43c5575fc	a4297226-b312-4048-b61f-58bfbc792aef	18	5891633	5891633	A	G	SNP	TMEM200C	NM_001080209.1	human	genbank	58_37c	-1	provisional	missense	c.430	p.S144P	0.701	HMMPfam_DUF2371	HMMPfam_DUF2371	-	no_errors
TP53	0	genome.wustl.edu	37	17	7577082	7577082	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E9-A1RB-01A-11D-A17G-09	TCGA-E9-A1RB-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ce0333c-deca-4199-a06c-ede43c5575fc	a4297226-b312-4048-b61f-58bfbc792aef	17	7577082	7577082	C	G	SNP	TP53	NM_000546.4	human	genbank	58_37c	-1	reviewed	missense	c.856	p.E286Q	1.000	superfamily_p53-like transcription factors,HMMPfam_P53	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
USP36	0	genome.wustl.edu	37	17	76798549	76798554	+	In_Frame_Del	DEL	TTTTTC	TTTTTC	-	novel	unknown	TCGA-E9-A1RB-01A-11D-A17G-09	TCGA-E9-A1RB-10A-01D-A159-09	TTTTTC	TTTTTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ce0333c-deca-4199-a06c-ede43c5575fc	a4297226-b312-4048-b61f-58bfbc792aef	17	76798549	76798554	TTTTTC	-	DEL	USP36	NM_025090.3	human	genbank	58_37c	-1	validated	in_frame_del	c.2879_2874	p.KK959in_frame_del	0.178:0.173:0.043:0.038:0.100:0.107	NULL	HMMPfam_UCH,PatternScan_IG_MHC,PatternScan_UCH_2_1,PatternScan_UCH_2_2,superfamily_SSF54001	-	no_errors
VWA3A	0	genome.wustl.edu	37	16	22142969	22142969	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E9-A1RB-01A-11D-A17G-09	TCGA-E9-A1RB-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ce0333c-deca-4199-a06c-ede43c5575fc	a4297226-b312-4048-b61f-58bfbc792aef	16	22142969	22142969	G	A	SNP	VWA3A	NM_173615.3	human	genbank	58_37c	+1	validated	silent	c.1791	p.V597	0.814	superfamily_vWA-like	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like	-	no_errors
WIPF1	0	genome.wustl.edu	37	2	175436606	175436606	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E9-A1RB-01A-11D-A17G-09	TCGA-E9-A1RB-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ce0333c-deca-4199-a06c-ede43c5575fc	a4297226-b312-4048-b61f-58bfbc792aef	2	175436606	175436606	C	T	SNP	WIPF1	NM_001077269.1	human	genbank	58_37c	-1	reviewed	silent	c.927	p.P309	0.089	NULL	HMMPfam_WH2,HMMSmart_SM00246	-	no_errors
ZNF281	0	genome.wustl.edu	37	1	200378052	200378052	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E9-A1RB-01A-11D-A17G-09	TCGA-E9-A1RB-10A-01D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ce0333c-deca-4199-a06c-ede43c5575fc	a4297226-b312-4048-b61f-58bfbc792aef	1	200378052	200378052	T	C	SNP	ZNF281	NM_012482.3	human	genbank	58_37c	-1	provisional	missense	c.782	p.H261R	1.000	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
