Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ADRA2B	0	genome.wustl.edu	37	2	96780986	96780987	+	In_Frame_Ins	INS	-	-	TCCTCCTCT	novel	unknown	TCGA-E9-A229-01A-31D-A17G-09	TCGA-E9-A229-10B-01D-A159-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a27fa57d-d1ad-4534-a933-0fdcc5f06a8c	32df7bac-7bb4-4538-800f-893a1ab3d28c	2	96780986	96780987	-	TCCTCCTCT	INS	ADRA2B	ENST00000409345	human	ensembl	58_37c	-1	known	in_frame_ins	c.903_902	p.305in_frame_insEEE	0.205:0.289	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
ARL6IP6	0	genome.wustl.edu	37	2	153575506	153575508	+	In_Frame_Del	DEL	TCC	TCC	-	novel	unknown	TCGA-E9-A229-01A-31D-A17G-09	TCGA-E9-A229-10B-01D-A159-09	TCC	TCC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a27fa57d-d1ad-4534-a933-0fdcc5f06a8c	32df7bac-7bb4-4538-800f-893a1ab3d28c	2	153575506	153575508	TCC	-	DEL	ARL6IP6	NM_152522.4	human	genbank	58_37c	+1	validated	in_frame_del	c.368_370	p.L125in_frame_del	0.946:0.969:0.994	NULL	NULL	-	no_errors
C1QL2	0	genome.wustl.edu	37	2	119915594	119915594	+	Silent	SNP	C	T	T	novel	unknown	TCGA-E9-A229-01A-31D-A17G-09	TCGA-E9-A229-10B-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a27fa57d-d1ad-4534-a933-0fdcc5f06a8c	32df7bac-7bb4-4538-800f-893a1ab3d28c	2	119915594	119915594	C	T	SNP	C1QL2	NM_182528.3	human	genbank	58_37c	-1	validated	silent	c.252	p.P84	0.915	HMMPfam_Collagen	HMMPfam_C1q,HMMSmart_SM00110,HMMPfam_Collagen,superfamily_TNF-like	-	no_errors
CASS4	0	genome.wustl.edu	37	20	55021046	55021046	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A229-01A-31D-A17G-09	TCGA-E9-A229-10B-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a27fa57d-d1ad-4534-a933-0fdcc5f06a8c	32df7bac-7bb4-4538-800f-893a1ab3d28c	20	55021046	55021046	G	A	SNP	CASS4	NM_020356.3	human	genbank	58_37c	+1	validated	missense	c.550	p.V184M	0.000	NULL	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_Serine_rich	-	no_errors
CBX3	0	genome.wustl.edu	37	7	26248161	26248165	+	Frame_Shift_Del	DEL	AAGAA	AAGAA	-	novel	unknown	TCGA-E9-A229-01A-31D-A17G-09	TCGA-E9-A229-10B-01D-A159-09	AAGAA	AAGAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a27fa57d-d1ad-4534-a933-0fdcc5f06a8c	32df7bac-7bb4-4538-800f-893a1ab3d28c	7	26248161	26248165	AAGAA	-	DEL	CBX3	NM_007276.3	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.316_320	p.K107fs	1.000:1.000:1.000:1.000:1.000	superfamily_Chromo domain-like	HMMPfam_Chromo,HMMSmart_SM00298,PatternScan_CHROMO_1,HMMPfam_Chromo_shadow,superfamily_Chromo domain-like,HMMSmart_SM00300	-	no_errors
CHD1	0	genome.wustl.edu	37	5	98240749	98240749	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E9-A229-01A-31D-A17G-09	TCGA-E9-A229-10B-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a27fa57d-d1ad-4534-a933-0fdcc5f06a8c	32df7bac-7bb4-4538-800f-893a1ab3d28c	5	98240749	98240749	G	C	SNP	CHD1	NM_001270.2	human	genbank	58_37c	-1	reviewed	missense	c.107	p.S36C	1.000	NULL	HMMPfam_SNF2_N,HMMPfam_Chromo,HMMSmart_SM00298,PatternScan_CHROMO_1,HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_Homeodomain-like,HMMSmart_SM00487,superfamily_Chromo domain-like,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
CP110	0	genome.wustl.edu	37	16	19556523	19556523	+	Silent	SNP	C	C	G	novel	unknown	TCGA-E9-A229-01A-31D-A17G-09	TCGA-E9-A229-10B-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a27fa57d-d1ad-4534-a933-0fdcc5f06a8c	32df7bac-7bb4-4538-800f-893a1ab3d28c	16	19556523	19556523	C	G	SNP	CP110	NM_014711.4	human	genbank	58_37c	+1	validated	silent	c.2694	p.L898	1.000	NULL	NULL	-	no_errors
CYBASC3	0	genome.wustl.edu	37	11	61120579	61120579	+	Silent	SNP	G	G	C	novel	unknown	TCGA-E9-A229-01A-31D-A17G-09	TCGA-E9-A229-10B-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a27fa57d-d1ad-4534-a933-0fdcc5f06a8c	32df7bac-7bb4-4538-800f-893a1ab3d28c	11	61120579	61120579	G	C	SNP	CYBASC3	NM_153611.4	human	genbank	58_37c	-1	validated	silent	c.426	p.P142	1.000	HMMPfam_Cytochrom_B561,HMMSmart_B561	HMMPfam_Cytochrom_B561,HMMSmart_B561	-	no_errors
DRD4	0	genome.wustl.edu	37	11	637537	637549	+	Frame_Shift_Del	DEL	CCGCCGACCTCCT	CCGCCGACCTCCT	-	novel	unknown	TCGA-E9-A229-01A-31D-A17G-09	TCGA-E9-A229-10B-01D-A159-09	CCGCCGACCTCCT	CCGCCGACCTCCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a27fa57d-d1ad-4534-a933-0fdcc5f06a8c	32df7bac-7bb4-4538-800f-893a1ab3d28c	11	637537	637549	CCGCCGACCTCCT	-	DEL	DRD4	NM_000797.3	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.233_245	p.A79fs	1.000:1.000:1.000:1.000:0.949:1.000:1.000:1.000:1.000:1.000:0.915:0.937:0.937	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
DSPP	0	genome.wustl.edu	37	4	88537444	88537444	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A229-01A-31D-A17G-09	TCGA-E9-A229-10B-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a27fa57d-d1ad-4534-a933-0fdcc5f06a8c	32df7bac-7bb4-4538-800f-893a1ab3d28c	4	88537444	88537444	C	T	SNP	DSPP	ENST00000432448	human	ensembl	58_37c	+1	known	missense	c.2030	p.A677V	0.279	HMMPfam_Nitroreductase,HMMPfam_COX1,HMMPfam_DUF81,HMMPfam_Peptidase_M20,HMMPfam_OPT,HMMPfam_Na_H_Exchanger,HMMPfam_MFS_1	HMMPfam_Nitroreductase,HMMPfam_COX1,HMMPfam_DUF81,HMMPfam_Peptidase_M20,HMMPfam_CitMHS,HMMPfam_C4dic_mal_tran,HMMPfam_OPT,HMMPfam_TerC,HMMPfam_Na_H_Exchanger,HMMPfam_MFS_1,HMMPfam_DUF2339	-	no_start_codon:no_stop_codon
ENSG00000176134	0	genome.wustl.edu	37	9	69653122	69653122	+	Silent	SNP	C	C	T	rs62549735	unknown	TCGA-E9-A229-01A-31D-A17G-09	TCGA-E9-A229-10B-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a27fa57d-d1ad-4534-a933-0fdcc5f06a8c	32df7bac-7bb4-4538-800f-893a1ab3d28c	9	69653122	69653122	C	T	SNP	ENSG00000176134	ENST00000322495	human	ensembl	58_37c	+1	known	silent	c.51	p.A17	0.953	HMMPfam_FTHFS,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_FTHFS,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_start_codon:no_stop_codon
ENSG00000210082	0	genome.wustl.edu	37	MT	1981	1981	+	RNA	SNP	G	G	A	novel	unknown	TCGA-E9-A229-01A-31D-A17G-09	TCGA-E9-A229-10B-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a27fa57d-d1ad-4534-a933-0fdcc5f06a8c	32df7bac-7bb4-4538-800f-893a1ab3d28c	MT	1981	1981	G	A	SNP	ENSG00000210082	ENST00000387347	human	ensembl	58_37c	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors
ENSG00000232657	0	genome.wustl.edu	37	4	49110441	49110441	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E9-A229-01A-31D-A17G-09	TCGA-E9-A229-10B-01D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a27fa57d-d1ad-4534-a933-0fdcc5f06a8c	32df7bac-7bb4-4538-800f-893a1ab3d28c	4	49110441	49110441	T	C	SNP	ENSG00000232657	ENST00000417204	human	ensembl	58_37c	-1	known	missense	c.61	p.M21V	0.000	NULL	NULL	-	no_stop_codon
EPHA2	0	genome.wustl.edu	37	1	16475203	16475203	+	Missense_Mutation	SNP	C	C	T	rs150790360	byFrequency	TCGA-E9-A229-01A-31D-A17G-09	TCGA-E9-A229-10B-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a27fa57d-d1ad-4534-a933-0fdcc5f06a8c	32df7bac-7bb4-4538-800f-893a1ab3d28c	1	16475203	16475203	C	T	SNP	EPHA2	NM_004431.3	human	genbank	58_37c	-1	reviewed	missense	c.493	p.V165M	1.000	HMMPfam_Ephrin_lbd,HMMSmart_EPH_lbd,superfamily_Gal_bind_like	HMMPfam_Ephrin_lbd,HMMSmart_EPH_lbd,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_RECEPTOR_TYR_KIN_V_1,PatternScan_RECEPTOR_TYR_KIN_V_2,HMMPfam_SAM_1,HMMSmart_SAM,HMMPfam_fn3,HMMSmart_FN3,PatternScan_PROTEIN_KINASE_TYR,superfamily_FN_III-like,superfamily_Gal_bind_like,superfamily_Grow_fac_recept,superfamily_SAM_homology,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP	-	no_errors
FAM157B	0	genome.wustl.edu	37	9	141107536	141107537	+	In_Frame_Ins	INS	-	-	GCA	novel	unknown	TCGA-E9-A229-01A-31D-A17G-09	TCGA-E9-A229-10B-01D-A159-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a27fa57d-d1ad-4534-a933-0fdcc5f06a8c	32df7bac-7bb4-4538-800f-893a1ab3d28c	9	141107536	141107537	-	GCA	INS	FAM157B	NM_001145249.1	human	genbank	58_37c	+1	inferred	in_frame_ins	c.218_219	p.77in_frame_insQ	0.033:0.036	NULL	NULL	-	no_errors
FOXA3	0	genome.wustl.edu	37	19	46376175	46376175	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E9-A229-01A-31D-A17G-09	TCGA-E9-A229-10B-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a27fa57d-d1ad-4534-a933-0fdcc5f06a8c	32df7bac-7bb4-4538-800f-893a1ab3d28c	19	46376175	46376175	C	T	SNP	FOXA3	NM_004497.2	human	genbank	58_37c	+1	reviewed	silent	c.912	p.F304	1.000	HMMPfam_HNF_C	HMMPfam_Fork_head,HMMSmart_FH,HMMPfam_Fork_head_N,PatternScan_FORK_HEAD_1,PatternScan_FORK_HEAD_2,HMMPfam_HNF_C,superfamily_SSF46785	-	no_errors
FRG1B	0	genome.wustl.edu	37	20	29625924	29625925	+	In_Frame_Ins	INS	-	-	CTT	novel	unknown	TCGA-E9-A229-01A-31D-A17G-09	TCGA-E9-A229-10B-01D-A159-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a27fa57d-d1ad-4534-a933-0fdcc5f06a8c	32df7bac-7bb4-4538-800f-893a1ab3d28c	20	29625924	29625925	-	CTT	INS	FRG1B	ENST00000278882	human	ensembl	58_37c	+1	known	in_frame_ins	c.168_169	p.57in_frame_insL	0.996:0.999	superfamily_Actin_crosslink,HMMPfam_FRG1	superfamily_Actin_crosslink,HMMPfam_FRG1	-	no_errors
FXR2	0	genome.wustl.edu	37	17	7496417	7496417	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E9-A229-01A-31D-A17G-09	TCGA-E9-A229-10B-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a27fa57d-d1ad-4534-a933-0fdcc5f06a8c	32df7bac-7bb4-4538-800f-893a1ab3d28c	17	7496417	7496417	C	T	SNP	FXR2	NM_004860.3	human	genbank	58_37c	-1	reviewed	silent	c.1413	p.R471	0.981	NULL	HMMSmart_SM00322,HMMPfam_Agenet,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I)	-	no_errors
GIGYF2	0	genome.wustl.edu	37	2	233712227	233712229	+	In_Frame_Del	DEL	ACA	ACA	-	novel	unknown	TCGA-E9-A229-01A-31D-A17G-09	TCGA-E9-A229-10B-01D-A159-09	ACA	ACA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a27fa57d-d1ad-4534-a933-0fdcc5f06a8c	32df7bac-7bb4-4538-800f-893a1ab3d28c	2	233712227	233712229	ACA	-	DEL	GIGYF2	NM_001103147.1	human	genbank	58_37c	+1	reviewed	in_frame_del	c.3693_3695	p.Q1235in_frame_del	0.057:0.094:0.124	NULL	HMMPfam_GYF,HMMSmart_GYF,superfamily_GYF	-	no_errors
GLI1	0	genome.wustl.edu	37	12	57863448	57863448	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A229-01A-31D-A17G-09	TCGA-E9-A229-10B-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a27fa57d-d1ad-4534-a933-0fdcc5f06a8c	32df7bac-7bb4-4538-800f-893a1ab3d28c	12	57863448	57863448	C	T	SNP	GLI1	NM_005269.2	human	genbank	58_37c	+1	reviewed	missense	c.1543	p.R515W	1.000	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
HEATR5B	0	genome.wustl.edu	37	2	37306265	37306265	+	Silent	SNP	T	T	C	novel	unknown	TCGA-E9-A229-01A-31D-A17G-09	TCGA-E9-A229-10B-01D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a27fa57d-d1ad-4534-a933-0fdcc5f06a8c	32df7bac-7bb4-4538-800f-893a1ab3d28c	2	37306265	37306265	T	C	SNP	HEATR5B	NM_019024.1	human	genbank	58_37c	-1	validated	silent	c.336	p.K112	1.000	superfamily_ARM repeat	HMMPfam_HEAT,superfamily_ARM repeat	-	no_errors
HEPACAM	0	genome.wustl.edu	37	11	124794753	124794753	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A229-01A-31D-A17G-09	TCGA-E9-A229-10B-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a27fa57d-d1ad-4534-a933-0fdcc5f06a8c	32df7bac-7bb4-4538-800f-893a1ab3d28c	11	124794753	124794753	G	A	SNP	HEPACAM	NM_152722.4	human	genbank	58_37c	-1	validated	nonsense	c.298	p.R100*	0.950	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
LOC100133855	0	genome.wustl.edu	37	9	58396	58396	+	RNA	SNP	G	A	A	novel	unknown	TCGA-E9-A229-01A-31D-A17G-09	TCGA-E9-A229-10B-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a27fa57d-d1ad-4534-a933-0fdcc5f06a8c	32df7bac-7bb4-4538-800f-893a1ab3d28c	9	58396	58396	G	A	SNP	LOC100133855	XR_038060.2	human	genbank	58_37c	-1	model	rna	NULL	NULL	0.175	-	-	-	pseudogene
LOC643387	0	genome.wustl.edu	37	2	239141518	239141518	+	RNA	SNP	G	G	A	novel	unknown	TCGA-E9-A229-01A-31D-A17G-09	TCGA-E9-A229-10B-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a27fa57d-d1ad-4534-a933-0fdcc5f06a8c	32df7bac-7bb4-4538-800f-893a1ab3d28c	2	239141518	239141518	G	A	SNP	LOC643387	NR_026923.1	human	genbank	58_37c	+1	provisional	rna	NULL	NULL	1.000	-	-	-	pseudogene
MEF2A	0	genome.wustl.edu	37	15	100252710	100252715	+	In_Frame_Del	DEL	CAGCAG	CAGCAG	-	novel	unknown	TCGA-E9-A229-01A-31D-A17G-09	TCGA-E9-A229-10B-01D-A159-09	CAGCAG	CAGCAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a27fa57d-d1ad-4534-a933-0fdcc5f06a8c	32df7bac-7bb4-4538-800f-893a1ab3d28c	15	100252710	100252715	CAGCAG	-	DEL	MEF2A	NM_005587.2	human	genbank	58_37c	+1	reviewed	in_frame_del	c.1234_1239	p.QQ415in_frame_del	1.000:1.000:1.000:1.000:1.000:1.000	NULL	HMMPfam_SRF-TF,HMMSmart_MADS,PatternScan_MADS_BOX_1,superfamily_TF_MADSbox	-	no_errors
MMACHC	0	genome.wustl.edu	37	1	45974548	45974548	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E9-A229-01A-31D-A17G-09	TCGA-E9-A229-10B-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a27fa57d-d1ad-4534-a933-0fdcc5f06a8c	32df7bac-7bb4-4538-800f-893a1ab3d28c	1	45974548	45974548	G	A	SNP	MMACHC	NM_015506.2	human	genbank	58_37c	+1	reviewed	silent	c.510	p.E170	0.999	NULL	NULL	-	no_errors
NCOR2	0	genome.wustl.edu	37	12	124887058	124887059	+	In_Frame_Ins	INS	-	-	GCT	novel	unknown	TCGA-E9-A229-01A-31D-A17G-09	TCGA-E9-A229-10B-01D-A159-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a27fa57d-d1ad-4534-a933-0fdcc5f06a8c	32df7bac-7bb4-4538-800f-893a1ab3d28c	12	124887058	124887059	-	GCT	INS	NCOR2	NM_006312.3	human	genbank	58_37c	-1	validated	in_frame_ins	c.1532_1531	p.511in_frame_insQ	0.999:1.000	NULL	HMMSmart_SM00717,superfamily_Homeodomain-like,HMMPfam_Myb_DNA-binding	-	no_errors
NUP98	0	genome.wustl.edu	37	11	3803284	3803284	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E9-A229-01A-31D-A17G-09	TCGA-E9-A229-10B-01D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a27fa57d-d1ad-4534-a933-0fdcc5f06a8c	32df7bac-7bb4-4538-800f-893a1ab3d28c	11	3803284	3803284	T	C	SNP	NUP98	NM_016320.4	human	genbank	58_37c	-1	reviewed	missense	c.64	p.T22A	1.000	NULL	HMMPfam_Nucleoporin2,superfamily_Peptidase_S59,superfamily_SSF88633	-	no_errors
OSBPL6	0	genome.wustl.edu	37	2	179213982	179213982	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A229-01A-31D-A17G-09	TCGA-E9-A229-10B-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a27fa57d-d1ad-4534-a933-0fdcc5f06a8c	32df7bac-7bb4-4538-800f-893a1ab3d28c	2	179213982	179213982	G	A	SNP	OSBPL6	NM_145739.1	human	genbank	58_37c	+1	reviewed	missense	c.1031	p.R344H	1.000	NULL	HMMPfam_Oxysterol_BP,HMMPfam_PH,HMMSmart_PH,PatternScan_OSBP,superfamily_SSF50729	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	rs121913279	byCluster	TCGA-E9-A229-01A-31D-A17G-09	TCGA-E9-A229-10B-01D-A159-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a27fa57d-d1ad-4534-a933-0fdcc5f06a8c	32df7bac-7bb4-4538-800f-893a1ab3d28c	3	178952085	178952085	A	G	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047R	1.000	HMMSmart_PI3Kc,superfamily_Kinase_like	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
PLK4	0	genome.wustl.edu	37	4	128804491	128804491	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E9-A229-01A-31D-A17G-09	TCGA-E9-A229-10B-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a27fa57d-d1ad-4534-a933-0fdcc5f06a8c	32df7bac-7bb4-4538-800f-893a1ab3d28c	4	128804491	128804491	G	A	SNP	PLK4	NM_014264.3	human	genbank	58_37c	+1	reviewed	silent	c.201	p.L67	1.000	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase	HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,HMMPfam_Sak_Polo,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,superfamily_SSF82615	-	no_errors
PSTPIP2	0	genome.wustl.edu	37	18	43579418	43579418	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A229-01A-31D-A17G-09	TCGA-E9-A229-10B-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a27fa57d-d1ad-4534-a933-0fdcc5f06a8c	32df7bac-7bb4-4538-800f-893a1ab3d28c	18	43579418	43579418	G	A	SNP	PSTPIP2	NM_024430.3	human	genbank	58_37c	-1	validated	missense	c.500	p.P167L	0.078	NULL	HMMPfam_FCH,HMMSmart_SM00055	-	no_errors
RTN3	0	genome.wustl.edu	37	11	63525654	63525654	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A229-01A-31D-A17G-09	TCGA-E9-A229-10B-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a27fa57d-d1ad-4534-a933-0fdcc5f06a8c	32df7bac-7bb4-4538-800f-893a1ab3d28c	11	63525654	63525654	C	T	SNP	RTN3	NM_201428.1	human	genbank	58_37c	+1	validated	missense	c.3023	p.A1008V	1.000	NULL	HMMPfam_Reticulon	-	no_errors
SARDH	0	genome.wustl.edu	37	9	136531950	136531950	+	Silent	SNP	G	G	T	novel	unknown	TCGA-E9-A229-01A-31D-A17G-09	TCGA-E9-A229-10B-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a27fa57d-d1ad-4534-a933-0fdcc5f06a8c	32df7bac-7bb4-4538-800f-893a1ab3d28c	9	136531950	136531950	G	T	SNP	SARDH	NM_001134707.1	human	genbank	58_37c	-1	reviewed	silent	c.2538	p.G846	0.876	HMMPfam_GCV_T_C,superfamily_SSF101790	HMMPfam_DAO,HMMPfam_GCV_T,HMMPfam_GCV_T_C,superfamily_SSF101790,superfamily_SSF103025,superfamily_SSF51905,superfamily_SSF54373	-	no_errors
SIP1	0	genome.wustl.edu	37	14	39584053	39584053	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A229-01A-31D-A17G-09	TCGA-E9-A229-10B-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a27fa57d-d1ad-4534-a933-0fdcc5f06a8c	32df7bac-7bb4-4538-800f-893a1ab3d28c	14	39584053	39584053	C	T	SNP	SIP1	NM_003616.2	human	genbank	58_37c	+1	reviewed	missense	c.191	p.P64L	1.000	HMMPfam_SIP1	HMMPfam_SIP1	-	no_errors
SPTA1	0	genome.wustl.edu	37	1	158583566	158583566	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E9-A229-01A-31D-A17G-09	TCGA-E9-A229-10B-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a27fa57d-d1ad-4534-a933-0fdcc5f06a8c	32df7bac-7bb4-4538-800f-893a1ab3d28c	1	158583566	158583566	C	A	SNP	SPTA1	NM_003126.2	human	genbank	58_37c	-1	reviewed	nonsense	c.6934	p.E2312*	1.000	superfamily_EF-hand	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_Spectrin,HMMPfam_efhand_Ca_insen,HMMSmart_SM00150,superfamily_Spectrin repeat,superfamily_EF-hand	-	no_errors
TNP2	0	genome.wustl.edu	37	16	11362818	11362818	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A229-01A-31D-A17G-09	TCGA-E9-A229-10B-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a27fa57d-d1ad-4534-a933-0fdcc5f06a8c	32df7bac-7bb4-4538-800f-893a1ab3d28c	16	11362818	11362818	C	T	SNP	TNP2	NM_005425.4	human	genbank	58_37c	-1	validated	missense	c.302	p.R101H	0.036	HMMPfam_TP2	HMMPfam_TP2,PatternScan_TP2_1,PatternScan_TP2_2	-	no_errors
TRPV2	0	genome.wustl.edu	37	17	16335490	16335492	+	In_Frame_Del	DEL	TGC	TGC	-	novel	unknown	TCGA-E9-A229-01A-31D-A17G-09	TCGA-E9-A229-10B-01D-A159-09	TGC	TGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a27fa57d-d1ad-4534-a933-0fdcc5f06a8c	32df7bac-7bb4-4538-800f-893a1ab3d28c	17	16335490	16335492	TGC	-	DEL	TRPV2	NM_016113.3	human	genbank	58_37c	+1	reviewed	in_frame_del	c.1865_1867	p.L626in_frame_del	1.000:1.000:1.000	HMMPfam_Ion_trans	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK,HMMPfam_Ion_trans	-	no_errors
XCL1	0	genome.wustl.edu	37	1	168550428	168550440	+	Frame_Shift_Del	DEL	GACCAATACAGCT	GACCAATACAGCT	-	novel	unknown	TCGA-E9-A229-01A-31D-A17G-09	TCGA-E9-A229-10B-01D-A159-09	GACCAATACAGCT	GACCAATACAGCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a27fa57d-d1ad-4534-a933-0fdcc5f06a8c	32df7bac-7bb4-4538-800f-893a1ab3d28c	1	168550428	168550440	GACCAATACAGCT	-	DEL	XCL1	NM_002995.1	human	genbank	58_37c	+1	provisional	frame_shift_del	c.315_327	p.T106fs	0.013:0.017:0.019:0.004:0.000:0.000:0.000:0.005:0.001:0.001:0.000:0.000:0.000	superfamily_Chemokine_IL8	HMMPfam_IL8,HMMSmart_SCY,superfamily_Chemokine_IL8	-	no_errors
