Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ABCD1	0	genome.wustl.edu	37	X	152991469	152991469	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	X	152991469	152991469	G	A	SNP	ABCD1	NM_000033.3	human	genbank	58_37c	+1	reviewed	missense	c.748	p.V250M	1.000	HMMPfam_ABC_membrane_2	HMMPfam_ABC_tran,HMMSmart_AAA,HMMPfam_ABC_membrane_2,PatternScan_ABC_TRANSPORTER_1,superfamily_SSF52540	-	no_errors
ADCY8	0	genome.wustl.edu	37	8	132051949	132051949	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	8	132051949	132051949	G	T	SNP	ADCY8	NM_001115.2	human	genbank	58_37c	-1	reviewed	missense	c.631	p.L211I	0.816	NULL	HMMPfam_Guanylate_cyc,HMMSmart_CYCc,superfamily_A/G_cyclase,HMMPfam_DUF1053,PatternScan_GUANYLATE_CYCLASE_1	-	no_errors
AFAP1L1	0	genome.wustl.edu	37	5	148702277	148702277	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	5	148702277	148702277	T	C	SNP	AFAP1L1	NM_152406.2	human	genbank	58_37c	+1	validated	missense	c.1807	p.S603P	1.000	NULL	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like	-	no_errors
AGPAT4	0	genome.wustl.edu	37	6	161575278	161575278	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	6	161575278	161575278	A	G	SNP	AGPAT4	NM_020133.2	human	genbank	58_37c	-1	reviewed	missense	c.413	p.F138S	1.000	HMMPfam_Acyltransferase,HMMSmart_PlsC,superfamily_SSF69593	HMMPfam_Acyltransferase,HMMSmart_PlsC,superfamily_SSF69593	-	no_errors
ANKRD20A4	0	genome.wustl.edu	37	9	69423641	69423641	+	Missense_Mutation	SNP	T	T	G	rs78815814	unknown	TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	9	69423641	69423641	T	G	SNP	ANKRD20A4	NM_001098805.1	human	genbank	58_37c	+1	provisional	missense	c.1937	p.M646R	0.903	NULL	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK	-	no_errors
ARHGEF6	0	genome.wustl.edu	37	X	135750295	135750295	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	X	135750295	135750295	C	T	SNP	ARHGEF6	NM_004840.2	human	genbank	58_37c	-1	reviewed	missense	c.2224	p.E742K	1.000	NULL	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_CH,HMMSmart_SM00033,HMMPfam_PH,HMMSmart_SM00233,superfamily_Calponin-homology domain CH-domain,superfamily_PH domain-like	-	no_errors
ARL6IP1	0	genome.wustl.edu	37	16	18810156	18810156	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	16	18810156	18810156	C	G	SNP	ARL6IP1	NM_015161.1	human	genbank	58_37c	-1	provisional	missense	c.37	p.A13P	1.000	NULL	HMMPfam_Reticulon	-	no_errors
ATP10A	0	genome.wustl.edu	37	15	25953412	25953412	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	15	25953412	25953412	T	C	SNP	ATP10A	NM_024490.3	human	genbank	58_37c	-1	reviewed	missense	c.2380	p.S794G	0.565	superfamily_SSF56784,superfamily_SSF81660	HMMPfam_E1-E2_ATPase,HMMPfam_Hydrolase_3,PatternScan_ATPASE_E1_E2,superfamily_SSF56784,superfamily_SSF81653,superfamily_SSF81660	-	no_errors
AUTS2	0	genome.wustl.edu	37	7	69364341	69364341	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	7	69364341	69364341	G	T	SNP	AUTS2	NM_015570.2	human	genbank	58_37c	+1	validated	nonsense	c.379	p.E127*	1.000	NULL	NULL	-	no_errors
AUTS2	0	genome.wustl.edu	37	7	70252256	70252256	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	7	70252256	70252256	C	T	SNP	AUTS2	NM_015570.2	human	genbank	58_37c	+1	validated	silent	c.2370	p.H790	1.000	NULL	NULL	-	no_errors
C15orf55	0	genome.wustl.edu	37	15	34646055	34646055	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	15	34646055	34646055	G	C	SNP	C15orf55	NM_175741.1	human	genbank	58_37c	+1	validated	missense	c.973	p.E325Q	1.000	NULL	NULL	-	no_errors
C20orf24	0	genome.wustl.edu	37	20	35236207	35236207	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	20	35236207	35236207	C	T	SNP	C20orf24	NM_199483.1	human	genbank	58_37c	+1	validated	silent	c.204	p.F68	1.000	HMMPfam_Rab5ip	HMMPfam_Rab5ip	-	no_errors
C9orf150	0	genome.wustl.edu	37	9	12775861	12775862	+	In_Frame_Ins	INS	-	-	GGCGGCGGC	novel	unknown	TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	9	12775861	12775862	-	GGCGGCGGC	INS	C9orf150	NM_203403.1	human	genbank	58_37c	+1	validated	in_frame_ins	c.147_148	p.53in_frame_insGGG	0.005:0.005	NULL	NULL	-	no_errors
CR1	0	genome.wustl.edu	37	1	207791576	207791576	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	1	207791576	207791576	G	A	SNP	CR1	NM_000651.4	human	genbank	58_37c	+1	reviewed	silent	c.7050	p.L2350	0.000	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain	-	no_errors
CUL7	0	genome.wustl.edu	37	6	43019030	43019030	+	Silent	SNP	C	C	G	novel	unknown	TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	6	43019030	43019030	C	G	SNP	CUL7	NM_014780.4	human	genbank	58_37c	-1	reviewed	silent	c.909	p.L303	1.000	NULL	HMMPfam_Cullin,HMMPfam_APC10,superfamily_Gal_bind_like,PatternScan_CULLIN_1,superfamily_Cullin_homology,superfamily_SSF46785	-	no_errors
CXorf22	0	genome.wustl.edu	37	X	35989890	35989890	+	Splice_Site	SNP	G	G	C	novel	unknown	TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	X	35989890	35989890	G	C	SNP	CXorf22	NM_152632.3	human	genbank	58_37c	+1	validated	splice_site	c.2157+1	e12+1	0.996	-	-	-	no_errors
DENND5A	0	genome.wustl.edu	37	11	9202357	9202357	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	11	9202357	9202357	C	T	SNP	DENND5A	NM_015213.2	human	genbank	58_37c	-1	validated	missense	c.1412	p.R471Q	1.000	NULL	HMMPfam_PLAT,HMMPfam_DENN,HMMSmart_SM00799,HMMPfam_RUN,HMMSmart_SM00593,HMMPfam_dDENN,HMMSmart_SM00801,HMMPfam_uDENN,HMMSmart_SM00800,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain)	-	no_errors
DIP2B	0	genome.wustl.edu	37	12	51108327	51108327	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	12	51108327	51108327	G	C	SNP	DIP2B	NM_173602.2	human	genbank	58_37c	+1	validated	missense	c.2799	p.M933I	1.000	NULL	HMMPfam_AMP-binding,HMMPfam_DMAP_binding,superfamily_Acetyl-CoA synthetase-like	-	no_errors
DMD	0	genome.wustl.edu	37	X	32716093	32716093	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	X	32716093	32716093	C	A	SNP	DMD	NM_004006.2	human	genbank	58_37c	-1	reviewed	missense	c.854	p.G285V	1.000	NULL	HMMPfam_ZZ,HMMSmart_SM00291,PatternScan_ZF_ZZ_1,HMMPfam_WW,HMMSmart_SM00456,PatternScan_WW_DOMAIN_1,superfamily_WW domain,PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_SM00033,HMMPfam_Spectrin,superfamily_Prefoldin,superfamily_t-snare proteins,HMMPfam_efhand_1,HMMPfam_efhand_2,superfamily_Calponin-homology domain CH-domain,HMMSmart_SM00150,superfamily_Spectrin repeat,superfamily_EF-hand	-	no_errors
ELMOD3	0	genome.wustl.edu	37	2	85617353	85617353	+	Missense_Mutation	SNP	G	G	A	rs148789800	unknown	TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	2	85617353	85617353	G	A	SNP	ELMOD3	NM_032213.4	human	genbank	58_37c	+1	validated	missense	c.908	p.R303Q	0.998	HMMPfam_ELMO_CED12	HMMPfam_ELMO_CED12	-	no_errors
ENSG00000198786	0	genome.wustl.edu	37	MT	13488	13488	+	Silent	SNP	T	T	C	novel	unknown	TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	MT	13488	13488	T	C	SNP	ENSG00000198786	ENST00000361567	human	ensembl	58_37c	+1	known	silent	c.1152	p.P384	NULL	HMMPfam_Oxidored_q1	HMMPfam_Oxidored_q1_N,HMMPfam_Oxidored_q1,HMMPfam_NADH5_C	-	mismatch_between_exon_seq_and_reference
ENSG00000198888	0	genome.wustl.edu	37	MT	3592	3592	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	MT	3592	3592	G	A	SNP	ENSG00000198888	ENST00000361390	human	ensembl	58_37c	+1	known	missense	c.286	p.V96I	NULL	HMMPfam_NADHdh	HMMPfam_NADHdh,PatternScan_COMPLEX1_ND1_1,PatternScan_COMPLEX1_ND1_2	-	no_stop_codon:mismatch_between_exon_seq_and_reference
ENSG00000198888	0	genome.wustl.edu	37	MT	3965	3965	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	MT	3965	3965	T	C	SNP	ENSG00000198888	ENST00000361390	human	ensembl	58_37c	+1	known	missense	c.659	p.F220S	NULL	HMMPfam_NADHdh	HMMPfam_NADHdh,PatternScan_COMPLEX1_ND1_1,PatternScan_COMPLEX1_ND1_2	-	no_stop_codon:mismatch_between_exon_seq_and_reference
ENSG00000226511	0	genome.wustl.edu	37	16	33752878	33752878	+	Missense_Mutation	SNP	C	C	A	rs684999	byFrequency	TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	16	33752878	33752878	C	A	SNP	ENSG00000226511	ENST00000450856	human	ensembl	58_37c	-1	known	missense	c.10	p.G4W	0.105	NULL	HMMSmart_SM00406,HMMPfam_V-set,superfamily_Immunoglobulin	-	no_stop_codon
EXT2	0	genome.wustl.edu	37	11	44130752	44130752	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	11	44130752	44130752	G	A	SNP	EXT2	NM_000401.3	human	genbank	58_37c	+1	reviewed	missense	c.584	p.R195Q	1.000	HMMPfam_Exostosin	HMMPfam_Exostosin,HMMPfam_Glyco_transf_64,superfamily_Nucleotide-diphospho-sugar transferases	-	no_errors
FAM157C	0	genome.wustl.edu	37	16	90168699	90168700	+	Frame_Shift_Del	DEL	CA	CA	-	novel	unknown	TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	CA	CA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	16	90168699	90168700	CA	-	DEL	FAM157C	XM_001714162.2	human	genbank	58_37c	+1	model	frame_shift_del	c.220_221	p.Q74fs	0.022:0.021	NULL	NULL	-	no_errors
FBXW8	0	genome.wustl.edu	37	12	117426610	117426610	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	12	117426610	117426610	A	C	SNP	FBXW8	NM_153348.2	human	genbank	58_37c	+1	reviewed	missense	c.1175	p.D392A	1.000	superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase	HMMSmart_SM00320,HMMPfam_F-box,HMMSmart_SM00256,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,PatternScan_WD_REPEATS_1,HMMPfam_WD40,superfamily_F-box domain	-	no_errors
FGG	0	genome.wustl.edu	37	4	155533233	155533233	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	4	155533233	155533233	C	A	SNP	FGG	NM_021870.2	human	genbank	58_37c	-1	reviewed	nonsense	c.244	p.E82*	0.967	HMMPfam_Fib_gamma	HMMPfam_Fibrinogen_C,HMMSmart_SM00186,PatternScan_FIBRIN_AG_C_DOMAIN,superfamily_Fibrinogen C-terminal domain-like,HMMPfam_Fib_gamma	-	no_errors
FOXP1	0	genome.wustl.edu	37	3	71027086	71027087	+	Frame_Shift_Del	DEL	AG	AG	-	novel	unknown	TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	AG	AG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	3	71027086	71027087	AG	-	DEL	FOXP1	NM_032682.4	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.1241_1240	p.L414fs	1.000:1.000	NULL	"HMMPfam_Fork_head,HMMSmart_SM00339,PatternScan_ZINC_FINGER_C2H2_1,PatternScan_FORK_HEAD_2,superfamily_""Winged helix"" DNA-binding domain"	-	no_errors
GLP2R	0	genome.wustl.edu	37	17	9774137	9774137	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	17	9774137	9774137	G	C	SNP	GLP2R	NM_004246.1	human	genbank	58_37c	+1	reviewed	missense	c.1130	p.R377T	1.000	HMMPfam_7tm_2	HMMPfam_7tm_2,HMMPfam_HRM,PatternScan_G_PROTEIN_RECEP_F2_1,PatternScan_G_PROTEIN_RECEP_F2_2,superfamily_SSF111418	-	no_errors
HELZ	0	genome.wustl.edu	37	17	65074605	65074605	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	17	65074605	65074605	G	A	SNP	HELZ	NM_014877.3	human	genbank	58_37c	-1	validated	silent	c.5592	p.G1864	1.000	NULL	HMMPfam_zf-CCCH,HMMSmart_ZnF_C3H1,HMMPfam_PAM2,superfamily_SSF52540,superfamily_SSF90229	-	no_errors
IGKV1D-17	0	genome.wustl.edu	37	2	90121682	90121682	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	2	90121682	90121682	C	A	SNP	IGKV1D-17	ENST00000483379	human	ensembl	58_37c	+1	known	missense	c.25	p.L9I	0.819	NULL	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin	-	no_stop_codon
IL17RD	0	genome.wustl.edu	37	3	57132299	57132299	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	3	57132299	57132299	C	T	SNP	IL17RD	NM_017563.3	human	genbank	58_37c	-1	validated	missense	c.1432	p.V478I	1.000	HMMPfam_SEFIR	HMMPfam_SEFIR	-	no_errors
INTS4	0	genome.wustl.edu	37	11	77702202	77702202	+	Silent	SNP	C	C	T	rs145060099	byFrequency	TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	11	77702202	77702202	C	T	SNP	INTS4	NM_033547.3	human	genbank	58_37c	-1	validated	silent	c.198	p.A66	0.958	NULL	HMMPfam_HEAT,superfamily_ARM repeat	-	no_errors
KIF21B	0	genome.wustl.edu	37	1	200944041	200944041	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	1	200944041	200944041	G	T	SNP	KIF21B	NM_017596.2	human	genbank	58_37c	-1	provisional	missense	c.4576	p.Q1526K	1.000	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40	HMMSmart_WD40,HMMPfam_Kinesin,HMMSmart_KISc,superfamily_Prefoldin,superfamily_WD40_like,PatternScan_WD_REPEATS_1,HMMPfam_WD40,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_SSF52540	-	no_errors
KRT83	0	genome.wustl.edu	37	12	52714811	52714811	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	12	52714811	52714811	G	A	SNP	KRT83	NM_002282.3	human	genbank	58_37c	-1	reviewed	silent	c.309	p.N103	0.986	NULL	HMMPfam_Filament,PatternScan_IF	-	no_errors
KRTAP10-7	0	genome.wustl.edu	37	21	46021138	46021138	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	21	46021138	46021138	T	C	SNP	KRTAP10-7	ENST00000380102	human	ensembl	58_37c	+1	known	missense	c.617	p.I206T	0.049	NULL	HMMPfam_Keratin_B2	-	no_errors
L1TD1	0	genome.wustl.edu	37	1	62673207	62673207	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	1	62673207	62673207	G	T	SNP	L1TD1	NM_019079.4	human	genbank	58_37c	+1	validated	missense	c.907	p.A303S	0.003	HMMPfam_Transposase_22	HMMPfam_Transposase_22	-	no_errors
LOC100129231	0	genome.wustl.edu	37	X	123338476	123338476	+	RNA	SNP	G	G	T	novel	unknown	TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	X	123338476	123338476	G	T	SNP	LOC100129231	XR_078598.1	human	genbank	58_37c	-1	model	rna	NULL	NULL	1.000	-	-	-	no_errors
LOC644548	0	genome.wustl.edu	37	4	63684481	63684481	+	RNA	SNP	G	G	C	novel	unknown	TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	4	63684481	63684481	G	C	SNP	LOC644548	XR_078302.1	human	genbank	58_37c	+1	model	rna	NULL	NULL	0.992	-	-	-	pseudogene
LOC728532	0	genome.wustl.edu	37	10	52026181	52026181	+	RNA	SNP	T	T	A	novel	unknown	TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	10	52026181	52026181	T	A	SNP	LOC728532	XR_015428.3	human	genbank	58_37c	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
LOC729057	0	genome.wustl.edu	37	22	16123616	16123616	+	RNA	SNP	C	C	G	novel	unknown	TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	22	16123616	16123616	C	G	SNP	LOC729057	XR_042044.2	human	genbank	58_37c	+1	model	rna	NULL	NULL	0.992	-	-	-	no_errors
MAP3K4	0	genome.wustl.edu	37	6	161510422	161510422	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	6	161510422	161510422	G	A	SNP	MAP3K4	NM_005922.2	human	genbank	58_37c	+1	reviewed	silent	c.2892	p.Q964	1.000	NULL	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
MBTPS2	0	genome.wustl.edu	37	X	21887782	21887782	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	X	21887782	21887782	G	A	SNP	MBTPS2	NM_015884.3	human	genbank	58_37c	+1	reviewed	missense	c.956	p.S319N	1.000	HMMPfam_Peptidase_M50	PatternScan_ZINC_PROTEASE,HMMPfam_Peptidase_M50	-	no_errors
MFAP5	0	genome.wustl.edu	37	12	8814696	8814696	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	12	8814696	8814696	G	A	SNP	MFAP5	NM_003480.2	human	genbank	58_37c	-1	reviewed	missense	c.5	p.S2L	0.891	HMMPfam_MAGP	HMMPfam_MAGP	-	no_errors
MGAT5	0	genome.wustl.edu	37	2	135107444	135107444	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	2	135107444	135107444	C	T	SNP	MGAT5	NM_002410.3	human	genbank	58_37c	+1	validated	missense	c.1181	p.S394L	0.999	NULL	NULL	-	no_errors
MUC4	0	genome.wustl.edu	37	3	195486130	195486130	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	3	195486130	195486130	G	T	SNP	MUC4	NM_018406.5	human	genbank	58_37c	-1	reviewed	missense	c.14467	p.Q4823K	0.972	NULL	HMMPfam_VWD,HMMSmart_SM00216,HMMPfam_NIDO,HMMSmart_SM00539,HMMPfam_AMOP,HMMSmart_SM00723,PatternScan_SUGAR_TRANSPORT_2,HMMSmart_SM00181,PatternScan_EGF_1,superfamily_EGF/Laminin	-	no_errors
MYH7B	0	genome.wustl.edu	37	20	33585277	33585277	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	20	33585277	33585277	C	A	SNP	MYH7B	NM_020884.3	human	genbank	58_37c	+1	reviewed	missense	c.3707	p.A1236D	1.000	HMMPfam_Myosin_tail_1	PatternScan_THIOL_PROTEASE_HIS,HMMPfam_Myosin_head,HMMSmart_SM00242,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_Prefoldin,superfamily_tRNA-binding arm,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
NBEA	0	genome.wustl.edu	37	13	35716469	35716469	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	13	35716469	35716469	G	T	SNP	NBEA	NM_015678.4	human	genbank	58_37c	+1	validated	missense	c.2400	p.L800F	1.000	superfamily_ARM repeat	HMMPfam_Beach,superfamily_BEACH domain,HMMSmart_SM00320,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_DUF1088,superfamily_WD40 repeat-like,superfamily_ARM repeat,HMMPfam_WD40,superfamily_PH domain-like	-	no_errors
NLGN4X	0	genome.wustl.edu	37	X	5811039	5811039	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	X	5811039	5811039	G	T	SNP	NLGN4X	NM_020742.2	human	genbank	58_37c	-1	reviewed	missense	c.2270	p.P757Q	0.998	NULL	HMMPfam_COesterase,PatternScan_CARBOXYLESTERASE_B_2,superfamily_alpha/beta-Hydrolases	-	no_errors
NOS1	0	genome.wustl.edu	37	12	117662851	117662851	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	12	117662851	117662851	G	T	SNP	NOS1	NM_000620.2	human	genbank	58_37c	-1	reviewed	missense	c.3796	p.Q1266K	1.000	HMMPfam_NAD_binding_1,superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain	HMMPfam_NAD_binding_1,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_FAD_binding_1,HMMPfam_NO_synthase,PatternScan_NOS,superfamily_Nitric oxide (NO) synthase oxygenase domain,HMMPfam_Flavodoxin_1,superfamily_Riboflavin synthase domain-like,superfamily_Flavoproteins,superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain	-	no_errors
NUAK1	0	genome.wustl.edu	37	12	106480580	106480580	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	12	106480580	106480580	G	T	SNP	NUAK1	NM_014840.2	human	genbank	58_37c	-1	validated	missense	c.445	p.R149S	0.694	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
NXF5	0	genome.wustl.edu	37	X	101096303	101096303	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	X	101096303	101096303	C	A	SNP	NXF5	NM_032946.2	human	genbank	58_37c	-1	reviewed	splice_site	c.322-1	e5-1	1.000	-	-	-	no_errors
OBSCN	0	genome.wustl.edu	37	1	228482539	228482539	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	1	228482539	228482539	G	A	SNP	OBSCN	NM_001098623.1	human	genbank	58_37c	+1	reviewed	silent	c.11454	p.T3818	0.000	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin	HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),HMMSmart_SM00219,HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00220,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,PatternScan_PROTEIN_KINASE_TYR,PatternScan_PROTEIN_KINASE_ST,superfamily_Fibronectin type III,superfamily_Protein kinase-like (PK-like),HMMPfam_I-set,HMMPfam_V-set,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,PatternScan_GLYCOSYL_HYDROL_F5,superfamily_Immunoglobulin,superfamily_PH domain-like	-	no_errors
OR10AD1	0	genome.wustl.edu	37	12	48596743	48596743	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	12	48596743	48596743	G	A	SNP	OR10AD1	NM_001004134.1	human	genbank	58_37c	-1	provisional	silent	c.333	p.A111	0.438	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
OR2L13	0	genome.wustl.edu	37	1	248262934	248262934	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	1	248262934	248262934	C	A	SNP	OR2L13	NM_175911.2	human	genbank	58_37c	+1	provisional	missense	c.257	p.S86Y	0.000	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
OR4C46	0	genome.wustl.edu	37	11	51515861	51515861	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	11	51515861	51515861	G	T	SNP	OR4C46	NM_001004703.1	human	genbank	58_37c	+1	provisional	nonsense	c.580	p.E194*	0.003	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
PAK2	0	genome.wustl.edu	37	3	196547338	196547338	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	3	196547338	196547338	G	A	SNP	PAK2	NM_002577.4	human	genbank	58_37c	+1	reviewed	missense	c.1250	p.R417Q	1.000	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase	HMMPfam_PBD,HMMSmart_PBD,HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
PCDHB12	0	genome.wustl.edu	37	5	140589271	140589271	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	5	140589271	140589271	C	T	SNP	PCDHB12	NM_018932.3	human	genbank	58_37c	+1	reviewed	silent	c.792	p.V264	0.021	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin	HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin	-	no_errors
PDZRN4	0	genome.wustl.edu	37	12	41966546	41966546	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	12	41966546	41966546	T	A	SNP	PDZRN4	NM_013377.3	human	genbank	58_37c	+1	validated	missense	c.1191	p.N397K	0.016	NULL	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ	-	no_errors
PHACTR2	0	genome.wustl.edu	37	6	144033228	144033228	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	6	144033228	144033228	G	T	SNP	PHACTR2	NM_001100164.1	human	genbank	58_37c	+1	validated	missense	c.122	p.R41I	1.000	NULL	HMMPfam_RPEL,HMMSmart_SM00707	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	T	rs121913279	byCluster	TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	3	178952085	178952085	A	T	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047L	1.000	HMMSmart_PI3Kc,superfamily_Kinase_like	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
PRAMEF12	0	genome.wustl.edu	37	1	12837483	12837483	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	1	12837483	12837483	G	A	SNP	PRAMEF12	NM_001080830.1	human	genbank	58_37c	+1	provisional	missense	c.1193	p.R398H	0.000	superfamily_SSF52047	superfamily_SSF52047	-	no_errors
PTPRJ	0	genome.wustl.edu	37	11	48175418	48175418	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	11	48175418	48175418	G	A	SNP	PTPRJ	NM_002843.3	human	genbank	58_37c	+1	reviewed	missense	c.3209	p.R1070H	1.000	HMMPfam_Y_phosphatase,HMMSmart_PTPc,superfamily_SSF52799	HMMPfam_Y_phosphatase,HMMSmart_PTPc,HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like,PatternScan_TYR_PHOSPHATASE_1,superfamily_SSF52799	-	no_errors
RNF214	0	genome.wustl.edu	37	11	117109661	117109661	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	11	117109661	117109661	A	C	SNP	RNF214	NM_001077239.1	human	genbank	58_37c	+1	validated	missense	c.452	p.E151A	1.000	NULL	superfamily_RING/U-box	-	no_errors
RNF8	0	genome.wustl.edu	37	6	37349063	37349063	+	Silent	SNP	T	T	C	novel	unknown	TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	6	37349063	37349063	T	C	SNP	RNF8	NM_003958.3	human	genbank	58_37c	+1	reviewed	silent	c.1374	p.N458	0.997	superfamily_RING/U-box	HMMPfam_FHA,HMMSmart_SM00240,HMMSmart_SM00184,superfamily_SMAD/FHA domain,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_RING/U-box	-	no_errors
SAGE1	0	genome.wustl.edu	37	X	134988302	134988302	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	X	134988302	134988302	G	T	SNP	SAGE1	NM_018666.2	human	genbank	58_37c	+1	reviewed	missense	c.574	p.A192S	0.002	NULL	NULL	-	no_errors
SCN9A	0	genome.wustl.edu	37	2	167163024	167163024	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	2	167163024	167163024	C	T	SNP	SCN9A	NM_002977.3	human	genbank	58_37c	-1	reviewed	missense	c.463	p.V155I	1.000	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels	HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,superfamily_Voltage-gated potassium channels	-	no_errors
SEC16B	0	genome.wustl.edu	37	1	177929522	177929522	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	1	177929522	177929522	G	T	SNP	SEC16B	NM_033127.2	human	genbank	58_37c	-1	validated	missense	c.953	p.S318Y	0.650	NULL	PatternScan_PHOSPHOPANTETHEINE	-	no_errors
TBC1D8	0	genome.wustl.edu	37	2	101650087	101650087	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	2	101650087	101650087	G	C	SNP	TBC1D8	NM_001102426.1	human	genbank	58_37c	-1	validated	missense	c.1692	p.F564L	1.000	HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p	HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p,HMMPfam_GRAM,HMMSmart_SM00568,superfamily_EF-hand	-	no_errors
THAP10	0	genome.wustl.edu	37	15	71175114	71175114	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	15	71175114	71175114	C	T	SNP	THAP10	NM_020147.2	human	genbank	58_37c	-1	provisional	missense	c.563	p.R188H	0.129	NULL	HMMPfam_THAP,HMMSmart_SM00692	-	no_errors
TMED1	0	genome.wustl.edu	37	19	10943683	10943683	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	19	10943683	10943683	C	T	SNP	TMED1	NM_006858.2	human	genbank	58_37c	-1	reviewed	silent	c.672	p.P224	0.000	NULL	HMMPfam_EMP24_GP25L,superfamily_SSF101576	-	no_errors
TRPM3	0	genome.wustl.edu	37	9	73152199	73152199	+	Missense_Mutation	SNP	G	G	A	rs142899826	unknown	TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	9	73152199	73152199	G	A	SNP	TRPM3	NM_001007471.2	human	genbank	58_37c	-1	reviewed	missense	c.3794	p.T1265M	0.997	NULL	HMMPfam_Ion_trans	-	no_errors
TRPS1	0	genome.wustl.edu	37	8	116426722	116426722	+	Silent	SNP	C	C	A	novel	unknown	TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	8	116426722	116426722	C	A	SNP	TRPS1	NM_014112.2	human	genbank	58_37c	-1	reviewed	silent	c.3414	p.P1138	1.000	NULL	HMMPfam_GATA,HMMSmart_ZnF_GATA,PatternScan_GATA_ZN_FINGER_1,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57716	-	no_errors
TTN	0	genome.wustl.edu	37	2	179604866	179604866	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	2	179604866	179604866	G	T	SNP	TTN	ENST00000342175	human	ensembl	58_37c	-1	known	missense	c.12581	p.A4194E	0.000	NULL	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_IG_MHC,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMSmart_SM00060,PatternScan_PROTEIN_KINASE_TYR,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1	-	no_errors
WDR35	0	genome.wustl.edu	37	2	20145695	20145695	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	2	20145695	20145695	G	C	SNP	WDR35	NM_001006657.1	human	genbank	58_37c	-1	reviewed	missense	c.1730	p.T577R	0.231	superfamily_WD40 repeat-like	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40	-	no_errors
XBP1	0	genome.wustl.edu	37	22	29195125	29195126	+	Frame_Shift_Del	DEL	CT	CT	-	novel	unknown	TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	CT	CT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	22	29195125	29195126	CT	-	DEL	XBP1	NM_001079539.1	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.244_243	p.R81fs	1.000:1.000	HMMSmart_BRLZ,PatternScan_BZIP_BASIC,HMMPfam_bZIP_2	HMMSmart_BRLZ,PatternScan_BZIP_BASIC,HMMPfam_bZIP_2	-	no_errors
XIRP2	0	genome.wustl.edu	37	2	168104572	168104572	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	2	168104572	168104572	G	T	SNP	XIRP2	NM_152381.4	human	genbank	58_37c	+1	validated	nonsense	c.6670	p.E2224*	0.094	NULL	HMMPfam_Xin	-	no_errors
XYLT1	0	genome.wustl.edu	37	16	17202698	17202698	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	16	17202698	17202698	C	T	SNP	XYLT1	NM_022166.3	human	genbank	58_37c	-1	reviewed	missense	c.2734	p.G912R	0.160	NULL	HMMPfam_Branch	-	no_errors
ZNF251	0	genome.wustl.edu	37	8	145948581	145948581	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	8	145948581	145948581	A	G	SNP	ZNF251	NM_138367.1	human	genbank	58_37c	-1	validated	missense	c.464	p.L155S	0.273	NULL	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF267	0	genome.wustl.edu	37	16	31926615	31926615	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	16	31926615	31926615	C	G	SNP	ZNF267	NM_003414.4	human	genbank	58_37c	+1	validated	missense	c.1045	p.P349A	0.996	superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF528	0	genome.wustl.edu	37	19	52919654	52919654	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	19	52919654	52919654	G	T	SNP	ZNF528	NM_032423.2	human	genbank	58_37c	+1	validated	nonsense	c.1549	p.G517*	0.998	superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF546	0	genome.wustl.edu	37	19	40521668	40521668	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A295-01A-11D-A16D-09	TCGA-E9-A295-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f3d5e986-046f-4f75-8abc-67a3b99f742d	cd761feb-9a20-4495-8943-c6243532a5cf	19	40521668	40521668	G	T	SNP	ZNF546	NM_178544.3	human	genbank	58_37c	+1	validated	nonsense	c.2491	p.E831*	1.000	superfamily_SSF57667	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
