Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ABCA6	0	genome.wustl.edu	37	17	67081246	67081246	+	Silent	SNP	C	C	T	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	17	67081246	67081246	C	T	SNP	ABCA6	NM_080284.2	human	genbank	58_37c	-1	reviewed	silent	c.4107	p.L1369	1.000	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ACIN1	0	genome.wustl.edu	37	14	23564377	23564377	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	14	23564377	23564377	C	A	SNP	ACIN1	NM_014977.3	human	genbank	58_37c	-1	validated	missense	c.119	p.R40L	1.000	NULL	HMMPfam_SAP,HMMSmart_SM00513,superfamily_RNA-binding domain RBD,superfamily_SAP domain	-	no_errors
ADAM19	0	genome.wustl.edu	37	5	156957818	156957818	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	5	156957818	156957818	A	G	SNP	ADAM19	NM_033274.2	human	genbank	58_37c	-1	reviewed	missense	c.404	p.I135T	0.984	HMMPfam_Pep_M12B_propep	"HMMPfam_Reprolysin,HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin),HMMPfam_Pep_M12B_propep,HMMPfam_ADAM_CR,HMMSmart_SM00608,PatternScan_EGF_2,HMMPfam_EGF_2,PatternScan_DISINTEGRIN_1,superfamily_Metalloproteases (""zincins"") catalytic domain"	-	no_errors
ADAMTS19	0	genome.wustl.edu	37	5	129040064	129040064	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	5	129040064	129040064	C	T	SNP	ADAMTS19	NM_133638.3	human	genbank	58_37c	+1	reviewed	nonsense	c.3274	p.R1092*	1.000	HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat	"HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMPfam_Reprolysin,HMMPfam_Pep_M12B_propep,PatternScan_ZINC_PROTEASE,HMMSmart_SM00608,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_ADAM_spacer1,HMMPfam_PLAC,superfamily_Metalloproteases (""zincins"") catalytic domain"	-	no_errors
ADAMTS2	0	genome.wustl.edu	37	5	178552030	178552030	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	5	178552030	178552030	G	A	SNP	ADAMTS2	NM_014244.2	human	genbank	58_37c	-1	reviewed	missense	c.2902	p.R968W	1.000	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat	"HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMPfam_Reprolysin,HMMPfam_Pep_M12B_propep,HMMPfam_ADAM_spacer1,superfamily_Metalloproteases (""zincins"") catalytic domain"	-	no_errors
ARHGEF6	0	genome.wustl.edu	37	X	135767916	135767916	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	X	135767916	135767916	C	G	SNP	ARHGEF6	NM_004840.2	human	genbank	58_37c	-1	reviewed	missense	c.1312	p.A438P	1.000	superfamily_PH domain-like	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_CH,HMMSmart_SM00033,HMMPfam_PH,HMMSmart_SM00233,superfamily_Calponin-homology domain CH-domain,superfamily_PH domain-like	-	no_errors
BAI1	0	genome.wustl.edu	37	8	143561149	143561149	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	8	143561149	143561149	G	A	SNP	BAI1	NM_001702.2	human	genbank	58_37c	+1	reviewed	missense	c.1822	p.A608T	1.000	HMMPfam_HRM,HMMSmart_SM00008	HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2,HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMPfam_HRM,HMMSmart_SM00008	-	no_errors
BEND2	0	genome.wustl.edu	37	X	18221806	18221806	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	X	18221806	18221806	G	C	SNP	BEND2	NM_153346.4	human	genbank	58_37c	-1	validated	missense	c.722	p.A241G	0.000	NULL	HMMPfam_BEN	-	no_errors
BTNL3	0	genome.wustl.edu	37	5	180429676	180429676	+	Silent	SNP	G	G	A	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	5	180429676	180429676	G	A	SNP	BTNL3	NM_197975.1	human	genbank	58_37c	+1	validated	silent	c.678	p.T226	0.000	NULL	HMMSmart_IG,HMMPfam_SPRY,HMMSmart_PRY,HMMPfam_V-set,HMMSmart_SPRY,superfamily_SSF48726	-	no_errors
BVES	0	genome.wustl.edu	37	6	105581324	105581324	+	Silent	SNP	C	C	A	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	6	105581324	105581324	C	A	SNP	BVES	NM_007073.3	human	genbank	58_37c	-1	reviewed	silent	c.129	p.L43	0.993	NULL	HMMPfam_Popeye,superfamily_cAMP-binding domain-like	-	no_errors
BZW2	0	genome.wustl.edu	37	7	16744257	16744257	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	7	16744257	16744257	G	T	SNP	BZW2	NM_014038.2	human	genbank	58_37c	+1	validated	missense	c.1194	p.M398I	1.000	HMMPfam_W2,HMMSmart_SM00515,superfamily_ARM repeat	HMMPfam_W2,HMMSmart_SM00515,superfamily_ARM repeat	-	no_errors
C19orf76	0	genome.wustl.edu	37	19	50193508	50193508	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	19	50193508	50193508	C	G	SNP	C19orf76	NM_001101340.1	human	genbank	58_37c	+1	validated	missense	c.220	p.P74A	0.986	NULL	NULL	-	no_errors
C6orf103	0	genome.wustl.edu	37	6	147122985	147122985	+	Silent	SNP	G	G	A	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	6	147122985	147122985	G	A	SNP	C6orf103	NM_024694.3	human	genbank	58_37c	+1	provisional	silent	c.4656	p.L1552	0.030	NULL	HMMPfam_IQ,HMMSmart_SM00230,superfamily_Cysteine proteinases	-	no_errors
CACNA1F	0	genome.wustl.edu	37	X	49074448	49074448	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	X	49074448	49074448	A	T	SNP	CACNA1F	NM_005183.2	human	genbank	58_37c	-1	reviewed	missense	c.2978	p.V993E	1.000	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels	HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ,superfamily_Voltage-gated potassium channels	-	no_errors
CCDC108	0	genome.wustl.edu	37	2	219873785	219873785	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	2	219873785	219873785	G	C	SNP	CCDC108	NM_194302.2	human	genbank	58_37c	-1	provisional	missense	c.4658	p.T1553S	1.000	NULL	PatternScan_MGMT,superfamily_PapD-like	-	no_errors
CD96	0	genome.wustl.edu	37	3	111319651	111319651	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	3	111319651	111319651	G	T	SNP	CD96	NM_198196.2	human	genbank	58_37c	+1	reviewed	missense	c.1025	p.S342I	0.000	NULL	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin	-	no_errors
CDH1	0	genome.wustl.edu	37	16	68847304	68847304	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	16	68847304	68847304	G	T	SNP	CDH1	NM_004360.3	human	genbank	58_37c	+1	reviewed	missense	c.1226	p.W409L	1.000	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like	HMMPfam_Cadherin_C,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_pro,superfamily_Cadherin-like	-	no_errors
CHD6	0	genome.wustl.edu	37	20	40118637	40118637	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	20	40118637	40118637	C	G	SNP	CHD6	NM_032221.3	human	genbank	58_37c	-1	reviewed	missense	c.1461	p.E487D	1.000	HMMPfam_SNF2_N,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_SNF2_N,HMMPfam_Chromo,HMMSmart_SM00298,HMMPfam_Helicase_C,HMMSmart_SM00490,PatternScan_DEAH_ATP_HELICASE,HMMPfam_BRK,HMMSmart_SM00592,HMMSmart_SM00487,superfamily_Chromo domain-like,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
COL4A6	0	genome.wustl.edu	37	X	107436869	107436869	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	X	107436869	107436869	G	T	SNP	COL4A6	NM_001847.2	human	genbank	58_37c	-1	reviewed	missense	c.1064	p.A355D	0.995	NULL	HMMPfam_C4,HMMSmart_SM00111,HMMPfam_Collagen,superfamily_C-type lectin-like	-	no_errors
CSMD1	0	genome.wustl.edu	37	8	3200906	3200906	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	8	3200906	3200906	G	T	SNP	CSMD1	NM_033225.5	human	genbank	58_37c	-1	validated	missense	c.3544	p.L1182M	0.000	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain	HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,PatternScan_GLYCOSYL_HYDROL_F10,superfamily_Complement control module/SCR domain	-	no_errors
DDX60L	0	genome.wustl.edu	37	4	169317267	169317267	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	4	169317267	169317267	T	A	SNP	DDX60L	NM_001012967.1	human	genbank	58_37c	-1	validated	missense	c.3500	p.K1167I	0.005	superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_Helicase_C,HMMSmart_SM00490,HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
DGCR2	0	genome.wustl.edu	37	22	19052401	19052401	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	22	19052401	19052401	C	A	SNP	DGCR2	NM_005137.2	human	genbank	58_37c	-1	reviewed	missense	c.508	p.D170Y	1.000	HMMSmart_CLECT,superfamily_C-type_lectin_fold	HMMSmart_VWC,PatternScan_VWFC_1,HMMSmart_CLECT,HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1,superfamily_LDL_rcpt_classA_cys-rich,superfamily_C-type_lectin_fold	-	no_errors
DNAH11	0	genome.wustl.edu	37	7	21775366	21775366	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	7	21775366	21775366	A	G	SNP	DNAH11	NM_003777.3	human	genbank	58_37c	+1	reviewed	missense	c.7570	p.T2524A	1.000	HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases	PatternScan_THIOL_PROTEASE_HIS,HMMSmart_SM00382,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,PatternScan_WD_REPEATS_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
DNAH12	0	genome.wustl.edu	37	3	57419473	57419473	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	3	57419473	57419473	G	A	SNP	DNAH12	NM_178504.4	human	genbank	58_37c	-1	validated	missense	c.4669	p.H1557Y	0.931	HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00382,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
DNAH17	0	genome.wustl.edu	37	17	76567383	76567383	+	Silent	SNP	G	G	A	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	17	76567383	76567383	G	A	SNP	DNAH17	ENST00000389840	human	ensembl	58_37c	-1	known	silent	c.810	p.N270	0.012	HMMPfam_DHC_N1	PatternScan_THIOL_PROTEASE_HIS,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,PatternScan_WD_REPEATS_1,superfamily_Spectrin repeat,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
DOCK10	0	genome.wustl.edu	37	2	225738767	225738767	+	Silent	SNP	G	G	T	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	2	225738767	225738767	G	T	SNP	DOCK10	NM_014689.2	human	genbank	58_37c	-1	validated	silent	c.1203	p.L401	1.000	NULL	HMMPfam_PH,HMMSmart_SM00233,HMMPfam_Ded_cyto,superfamily_PH domain-like	-	no_errors
DPF3	0	genome.wustl.edu	37	14	73198577	73198577	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	14	73198577	73198577	G	A	SNP	DPF3	NM_012074.3	human	genbank	58_37c	-1	provisional	missense	c.367	p.R123C	0.998	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
ENSG00000175985	0	genome.wustl.edu	37	14	69969563	69969563	+	Silent	SNP	C	C	G	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	14	69969563	69969563	C	G	SNP	ENSG00000175985	ENST00000322564	human	ensembl	58_37c	+1	known	silent	c.522	p.T174	0.001	NULL	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729	-	no_errors
ENSG00000198786	0	genome.wustl.edu	37	MT	13841	13841	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	MT	13841	13841	T	C	SNP	ENSG00000198786	ENST00000361567	human	ensembl	58_37c	+1	known	missense	c.1505	p.L502P	NULL	HMMPfam_NADH5_C	HMMPfam_Oxidored_q1_N,HMMPfam_Oxidored_q1,HMMPfam_NADH5_C	-	mismatch_between_exon_seq_and_reference
ENSG00000210082	0	genome.wustl.edu	37	MT	2975	2975	+	RNA	SNP	G	G	A	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	MT	2975	2975	G	A	SNP	ENSG00000210082	ENST00000387347	human	ensembl	58_37c	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors
EPHA6	0	genome.wustl.edu	37	3	97167503	97167503	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	3	97167503	97167503	A	C	SNP	EPHA6	NM_001080448.2	human	genbank	58_37c	+1	provisional	missense	c.1823	p.H608P	0.986	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III	HMMPfam_Ephrin_lbd,HMMSmart_SM00615,HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,PatternScan_RECEPTOR_TYR_KIN_V_1,PatternScan_RECEPTOR_TYR_KIN_V_2,HMMPfam_SAM_1,HMMSmart_SM00454,HMMSmart_SM00220,HMMPfam_fn3,HMMSmart_SM00060,PatternScan_PROTEIN_KINASE_TYR,superfamily_Fibronectin type III,superfamily_Galactose-binding domain-like,superfamily_Growth factor receptor domain,superfamily_SAM/Pointed domain,superfamily_Protein kinase-like (PK-like),PatternScan_EGF_2,PatternScan_PROTEIN_KINASE_ATP	-	no_errors
FAM157C	0	genome.wustl.edu	37	16	90168699	90168700	+	Frame_Shift_Del	DEL	CA	CA	-	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	CA	CA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	16	90168699	90168700	CA	-	DEL	FAM157C	XM_001714162.2	human	genbank	58_37c	+1	model	frame_shift_del	c.220_221	p.Q74fs	0.022:0.021	NULL	NULL	-	no_errors
FAM160B1	0	genome.wustl.edu	37	10	116602860	116602860	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	10	116602860	116602860	C	T	SNP	FAM160B1	NM_020940.3	human	genbank	58_37c	+1	validated	nonsense	c.691	p.Q231*	0.272	HMMPfam_RAI16-like	HMMPfam_RAI16-like	-	no_errors
FAM170B	0	genome.wustl.edu	37	10	50340195	50340195	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	10	50340195	50340195	A	T	SNP	FAM170B	ENST00000311787	human	ensembl	58_37c	-1	known	missense	c.315	p.S105R	0.001	NULL	NULL	-	no_errors
FAM48B1	0	genome.wustl.edu	37	X	24382956	24382956	+	Silent	SNP	G	G	A	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	X	24382956	24382956	G	A	SNP	FAM48B1	NM_001136234.1	human	genbank	58_37c	+1	inferred	silent	c.2079	p.S693	0.000	NULL	NULL	-	no_errors
FAT1	0	genome.wustl.edu	37	4	187628565	187628565	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	4	187628565	187628565	C	T	SNP	FAT1	NM_005245.3	human	genbank	58_37c	-1	reviewed	missense	c.2417	p.R806H	0.956	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like	PatternScan_ASX_HYDROXYL,HMMSmart_SM00282,HMMSmart_SM00179,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_Cadherin-like,PatternScan_EGF_CA,superfamily_EGF/Laminin	-	no_errors
FER1L6	0	genome.wustl.edu	37	8	125131850	125131850	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	8	125131850	125131850	G	A	SNP	FER1L6	NM_001039112.2	human	genbank	58_37c	+1	validated	missense	c.5393	p.R1798H	1.000	NULL	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_FerB,HMMPfam_FerI	-	no_errors
FGFR2	0	genome.wustl.edu	37	10	123258049	123258049	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	10	123258049	123258049	G	C	SNP	FGFR2	NM_022970.3	human	genbank	58_37c	-1	reviewed	missense	c.1635	p.H545Q	1.000	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,HMMSmart_IGc2,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,HMMPfam_I-set,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF48726	-	no_errors
FHAD1	0	genome.wustl.edu	37	1	15702190	15702190	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	1	15702190	15702190	G	C	SNP	FHAD1	ENST00000444385	human	ensembl	58_37c	+1	known	missense	c.1559	p.R520P	0.002	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
FLJ45248	0	genome.wustl.edu	37	8	103821468	103821472	+	RNA	DEL	GAGCA	GAGCA	-	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	GAGCA	GAGCA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	8	103821468	103821472	GAGCA	-	DEL	FLJ45248	XR_078393.1	human	genbank	58_37c	+1	model	rna	NULL	NULL	0.000:0.001:0.002:0.001:0.000	-	-	-	no_errors
FZD9	0	genome.wustl.edu	37	7	72849811	72849811	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	7	72849811	72849811	G	A	SNP	FZD9	NM_003508.2	human	genbank	58_37c	+1	reviewed	missense	c.1474	p.G492R	0.962	HMMPfam_Frizzled	superfamily_Frizzled_Cys-rich,HMMPfam_Frizzled,HMMPfam_Fz,HMMSmart_FRI	-	no_errors
GIGYF2	0	genome.wustl.edu	37	2	233712227	233712229	+	In_Frame_Del	DEL	ACA	ACA	-	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	ACA	ACA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	2	233712227	233712229	ACA	-	DEL	GIGYF2	NM_001103147.1	human	genbank	58_37c	+1	reviewed	in_frame_del	c.3693_3695	p.Q1235in_frame_del	0.057:0.094:0.124	NULL	HMMPfam_GYF,HMMSmart_GYF,superfamily_GYF	-	no_errors
GPR128	0	genome.wustl.edu	37	3	100373936	100373936	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	3	100373936	100373936	T	A	SNP	GPR128	NM_032787.2	human	genbank	58_37c	+1	validated	missense	c.1637	p.L546H	0.976	HMMPfam_7tm_2	HMMPfam_GPS,HMMSmart_GPS,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2	-	no_errors
GRIA3	0	genome.wustl.edu	37	X	122319694	122319694	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	X	122319694	122319694	C	A	SNP	GRIA3	NM_000828.4	human	genbank	58_37c	+1	reviewed	nonsense	c.119	p.S40*	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
GUCY2C	0	genome.wustl.edu	37	12	14849213	14849213	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	12	14849213	14849213	G	A	SNP	GUCY2C	NM_004963.3	human	genbank	58_37c	-1	validated	missense	c.170	p.A57V	0.013	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I	HMMPfam_Guanylate_cyc,HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain,HMMSmart_SM00219,HMMPfam_ANF_receptor,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,PatternScan_GUANYLATE_CYCLASE_1,superfamily_Periplasmic binding protein-like I	-	no_errors
HECTD1	0	genome.wustl.edu	37	14	31598424	31598424	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	14	31598424	31598424	T	G	SNP	HECTD1	NM_015382.2	human	genbank	58_37c	-1	validated	missense	c.4153	p.S1385R	1.000	NULL	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,superfamily_Galactose-binding domain-like,HMMPfam_MIB_HERC2,HMMPfam_Sad1_UNC,superfamily_ARM repeat	-	no_errors
HECW1	0	genome.wustl.edu	37	7	43484164	43484164	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	7	43484164	43484164	G	T	SNP	HECW1	NM_015052.3	human	genbank	58_37c	+1	validated	missense	c.1393	p.G465C	0.053	NULL	HMMPfam_C2,HMMSmart_C2,HMMPfam_HECT,HMMSmart_HECTc,superfamily_HECT,HMMPfam_WW,HMMSmart_WW,PatternScan_WW_DOMAIN_1,superfamily_WW_Rsp5_WWP,superfamily_C2_CaLB	-	no_errors
HMCN1	0	genome.wustl.edu	37	1	186026400	186026400	+	Silent	SNP	T	T	C	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	1	186026400	186026400	T	C	SNP	HMCN1	NM_031935.2	human	genbank	58_37c	+1	reviewed	silent	c.7179	p.P2393	0.998	HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin	PatternScan_ASX_HYDROXYL,PatternScan_CECROPIN,HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00179,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_EGF,HMMSmart_SM00181,HMMPfam_G2F,HMMSmart_SM00682,superfamily_GFP-like,PatternScan_EGF_2,HMMPfam_EGF_CA,HMMPfam_I-set,HMMPfam_ig,PatternScan_EGF_CA,superfamily_Immunoglobulin,superfamily_vWA-like,superfamily_EGF/Laminin	-	no_errors
HMGCR	0	genome.wustl.edu	37	5	74640149	74640149	+	Silent	SNP	A	A	G	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	5	74640149	74640149	A	G	SNP	HMGCR	NM_000859.2	human	genbank	58_37c	+1	reviewed	silent	c.357	p.T119	0.994	superfamily_Multidrug efflux transporter AcrB transmembrane domain	HMMPfam_HMG-CoA_red,PatternScan_HMG_COA_REDUCTASE_1,PatternScan_HMG_COA_REDUCTASE_2,PatternScan_HMG_COA_REDUCTASE_3,superfamily_NAD-binding domain of HMG-CoA reductase,superfamily_Substrate-binding domain of HMG-CoA reductase,superfamily_Multidrug efflux transporter AcrB transmembrane domain	-	no_errors
IL11RA	0	genome.wustl.edu	37	9	34657465	34657465	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	9	34657465	34657465	G	A	SNP	IL11RA	NM_001142784.1	human	genbank	58_37c	+1	reviewed	missense	c.527	p.G176E	0.992	HMMSmart_SM00060,superfamily_Fibronectin type III	PatternScan_HEMATOPO_REC_L_F3,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
IL6ST	0	genome.wustl.edu	37	5	55248110	55248110	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	5	55248110	55248110	G	C	SNP	IL6ST	NM_002184.2	human	genbank	58_37c	-1	reviewed	missense	c.1520	p.P507R	0.123	HMMPfam_fn3,superfamily_Fibronectin type III	PatternScan_HEMATOPO_REC_L_F2,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_Lep_receptor_Ig	-	no_errors
IPO5	0	genome.wustl.edu	37	13	98671984	98671984	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	13	98671984	98671984	T	C	SNP	IPO5	NM_002271.4	human	genbank	58_37c	+1	reviewed	missense	c.3040	p.W1014R	1.000	superfamily_ARM-type_fold	HMMPfam_HEAT,superfamily_ARM-type_fold	-	no_errors
ITSN1	0	genome.wustl.edu	37	21	35258721	35258721	+	Silent	SNP	C	C	G	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	21	35258721	35258721	C	G	SNP	ITSN1	NM_003024.2	human	genbank	58_37c	+1	reviewed	silent	c.4974	p.V1658	0.563	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	HMMPfam_C2,HMMSmart_SM00239,HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),HMMSmart_SM00027,PatternScan_DH_1,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00054,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_EF-hand,superfamily_PH domain-like	-	no_errors
KLHL25	0	genome.wustl.edu	37	15	86311723	86311723	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	15	86311723	86311723	A	C	SNP	KLHL25	NM_022480.3	human	genbank	58_37c	-1	validated	missense	c.1319	p.V440G	1.000	HMMPfam_Kelch_1,HMMSmart_Kelch,superfamily_Gal_oxid_central	HMMSmart_BTB,HMMPfam_Kelch_1,HMMSmart_Kelch,superfamily_Gal_oxid_central,superfamily_BTB/POZ_fold,HMMPfam_BACK,HMMPfam_BTB	-	no_errors
KNG1	0	genome.wustl.edu	37	3	186459878	186459878	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	3	186459878	186459878	G	A	SNP	KNG1	NM_001102416.2	human	genbank	58_37c	+1	reviewed	missense	c.1693	p.D565N	0.986	NULL	HMMPfam_Cystatin,HMMSmart_SM00043,PatternScan_CYSTATIN,superfamily_Cystatin/monellin	-	no_errors
KRT32	0	genome.wustl.edu	37	17	39622349	39622349	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	17	39622349	39622349	G	T	SNP	KRT32	NM_002278.3	human	genbank	58_37c	-1	reviewed	missense	c.548	p.A183D	0.999	HMMPfam_Filament	HMMPfam_Filament,PatternScan_IF	-	no_errors
KRT38	0	genome.wustl.edu	37	17	39596964	39596964	+	Silent	SNP	C	C	T	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	17	39596964	39596964	C	T	SNP	KRT38	NM_006771.3	human	genbank	58_37c	-1	reviewed	silent	c.210	p.P70	0.002	NULL	HMMPfam_Filament,PatternScan_IF	-	no_errors
LAMB1	0	genome.wustl.edu	37	7	107572731	107572731	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	7	107572731	107572731	C	T	SNP	LAMB1	NM_002291.2	human	genbank	58_37c	-1	reviewed	missense	c.4280	p.G1427E	1.000	NULL	HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,HMMSmart_SM00181,HMMPfam_Laminin_N,HMMSmart_SM00136,superfamily_Prefoldin,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_EGF/Laminin	-	no_errors
LCE4A	0	genome.wustl.edu	37	1	152681654	152681654	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	1	152681654	152681654	C	T	SNP	LCE4A	NM_178356.2	human	genbank	58_37c	+1	validated	missense	c.103	p.P35S	0.001	NULL	PatternScan_EGF_1	-	no_errors
LOC284900	0	genome.wustl.edu	37	22	28397319	28397319	+	RNA	SNP	C	C	A	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	22	28397319	28397319	C	A	SNP	LOC284900	NR_026963.1	human	genbank	58_37c	+1	validated	rna	NULL	NULL	0.000	-	-	-	no_errors
LOC728211	0	genome.wustl.edu	37	18	12075725	12075725	+	RNA	SNP	G	G	A	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	18	12075725	12075725	G	A	SNP	LOC728211	XR_015403.2	human	genbank	58_37c	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
LRBA	0	genome.wustl.edu	37	4	151749586	151749586	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	4	151749586	151749586	C	T	SNP	LRBA	ENST00000509835	human	ensembl	58_37c	-1	known	missense	c.875	p.R292K	1.000	NULL	HMMPfam_Beach,superfamily_BEACH domain,HMMSmart_SM00320,HMMPfam_DUF1088,superfamily_WD40 repeat-like,HMMPfam_WD40,superfamily_PH domain-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
LRP6	0	genome.wustl.edu	37	12	12300444	12300444	+	Missense_Mutation	SNP	G	G	A	rs143966208	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	12	12300444	12300444	G	A	SNP	LRP6	NM_002336.2	human	genbank	58_37c	-1	reviewed	missense	c.3253	p.R1085W	1.000	HMMPfam_Ldl_recept_b,HMMSmart_SM00135,superfamily_YWTD domain	HMMPfam_Ldl_recept_b,HMMSmart_SM00135,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_LDL receptor-like module,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_2,superfamily_EGF/Laminin,superfamily_YWTD domain	-	no_errors
LRRC16A	0	genome.wustl.edu	37	6	25600888	25600888	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	6	25600888	25600888	C	T	SNP	LRRC16A	NM_017640.5	human	genbank	58_37c	+1	validated	missense	c.3466	p.R1156W	0.995	NULL	superfamily_SSF52047	-	no_errors
LRRTM4	0	genome.wustl.edu	37	2	77746784	77746784	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	2	77746784	77746784	T	A	SNP	LRRTM4	NM_001134745.1	human	genbank	58_37c	-1	validated	missense	c.211	p.N71Y	1.000	superfamily_L domain-like	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like	-	no_errors
MAGI2	0	genome.wustl.edu	37	7	77756528	77756528	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	7	77756528	77756528	A	T	SNP	MAGI2	NM_012301.3	human	genbank	58_37c	-1	reviewed	missense	c.3409	p.Y1137N	1.000	superfamily_PDZ domain-like	HMMPfam_WW,HMMSmart_SM00456,PatternScan_WW_DOMAIN_1,superfamily_WW domain,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_Guanylate_kin,HMMSmart_SM00072,PatternScan_GUANYLATE_KINASE_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
MARK1	0	genome.wustl.edu	37	1	220752703	220752703	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	1	220752703	220752703	C	G	SNP	MARK1	NM_018650.3	human	genbank	58_37c	+1	validated	missense	c.59	p.S20C	1.000	NULL	HMMPfam_UBA,HMMSmart_SM00219,HMMPfam_KA1,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00165,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,superfamily_Kinase associated domain 1 KA1	-	no_errors
MDM4	0	genome.wustl.edu	37	1	204506608	204506608	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	1	204506608	204506608	A	T	SNP	MDM4	NM_002393.3	human	genbank	58_37c	+1	validated	missense	c.394	p.S132C	1.000	NULL	PatternScan_ZF_RANBP2_1,HMMPfam_SWIB,superfamily_SWIB/MDM2 domain,superfamily_RING/U-box	-	no_errors
MEI1	0	genome.wustl.edu	37	22	42177711	42177711	+	Silent	SNP	C	C	T	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	22	42177711	42177711	C	T	SNP	MEI1	NM_152513.3	human	genbank	58_37c	+1	validated	silent	c.2949	p.S983	0.579	NULL	superfamily_ARM repeat	-	no_errors
MOXD1	0	genome.wustl.edu	37	6	132618423	132618423	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	6	132618423	132618423	C	G	SNP	MOXD1	NM_015529.2	human	genbank	58_37c	-1	validated	missense	c.1711	p.E571Q	0.006	NULL	HMMPfam_Cu2_monooxygen,HMMSmart_SM00664,superfamily_PHM/PNGase F,HMMPfam_DOMON,HMMPfam_Cu2_monoox_C	-	no_errors
MSRA	0	genome.wustl.edu	37	8	10285774	10285774	+	Silent	SNP	C	C	T	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	8	10285774	10285774	C	T	SNP	MSRA	NM_012331.3	human	genbank	58_37c	+1	reviewed	silent	c.660	p.C220	0.446	HMMPfam_PMSR,superfamily_Peptide methionine sulfoxide reductase	HMMPfam_PMSR,superfamily_Peptide methionine sulfoxide reductase	-	no_errors
MUC12	0	genome.wustl.edu	37	7	100647835	100647835	+	Nonsense_Mutation	SNP	C	C	G	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	7	100647835	100647835	C	G	SNP	MUC12	ENST00000379442	human	ensembl	58_37c	+1	known	nonsense	c.14420	p.S4807*	0.127	NULL	HMMPfam_SEA,HMMSmart_SEA,PatternScan_EGF_1,PatternScan_EGF_2	-	no_errors
MUC4	0	genome.wustl.edu	37	3	195480096	195480096	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	3	195480096	195480096	C	A	SNP	MUC4	NM_018406.5	human	genbank	58_37c	-1	reviewed	missense	c.14950	p.G4984W	0.699	NULL	HMMPfam_VWD,HMMSmart_SM00216,HMMPfam_NIDO,HMMSmart_SM00539,HMMPfam_AMOP,HMMSmart_SM00723,PatternScan_SUGAR_TRANSPORT_2,HMMSmart_SM00181,PatternScan_EGF_1,superfamily_EGF/Laminin	-	no_errors
NBPF1	0	genome.wustl.edu	37	1	16912063	16912063	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	1	16912063	16912063	T	A	SNP	NBPF1	NM_017940.3	human	genbank	58_37c	-1	predicted	missense	c.909	p.K303N	0.026	NULL	HMMPfam_DUF1220	-	no_errors
NCR2	0	genome.wustl.edu	37	6	41303645	41303647	+	In_Frame_Del	DEL	CTG	CTG	-	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	CTG	CTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	6	41303645	41303647	CTG	-	DEL	NCR2	NM_004828.3	human	genbank	58_37c	+1	validated	in_frame_del	c.31_33	p.L14in_frame_del	0.922:0.985:0.992	NULL	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin	-	no_errors
NDUFV1	0	genome.wustl.edu	37	11	67375917	67375917	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	11	67375917	67375917	T	G	SNP	NDUFV1	NM_007103.3	human	genbank	58_37c	+1	reviewed	missense	c.123	p.I41M	0.987	NULL	PatternScan_COMPLEX1_51K_1,PatternScan_COMPLEX1_51K_2,HMMPfam_Complex1_51K,HMMPfam_SLBB,HMMPfam_NADH_4Fe-4S	-	no_errors
NLGN4X	0	genome.wustl.edu	37	X	5821686	5821686	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	X	5821686	5821686	C	T	SNP	NLGN4X	NM_020742.2	human	genbank	58_37c	-1	reviewed	missense	c.1033	p.D345N	1.000	HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases	HMMPfam_COesterase,PatternScan_CARBOXYLESTERASE_B_2,superfamily_alpha/beta-Hydrolases	-	no_errors
NR1H2	0	genome.wustl.edu	37	19	50881822	50881823	+	In_Frame_Ins	INS	-	-	CAG	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	19	50881822	50881823	-	CAG	INS	NR1H2	NM_007121.4	human	genbank	58_37c	+1	validated	in_frame_ins	c.516_517	p.175in_frame_insQ	0.999:1.000	superfamily_Nuclear receptor ligand-binding domain,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	HMMPfam_Hormone_recep,HMMSmart_SM00430,HMMPfam_zf-C4,HMMSmart_SM00399,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
NUB1	0	genome.wustl.edu	37	7	151071305	151071305	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	7	151071305	151071305	C	T	SNP	NUB1	ENST00000480714	human	ensembl	58_37c	+1	known	missense	c.181	p.R61W	0.026	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
NXF1	0	genome.wustl.edu	37	11	62561771	62561771	+	Silent	SNP	T	T	C	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	11	62561771	62561771	T	C	SNP	NXF1	NM_006362.4	human	genbank	58_37c	-1	reviewed	silent	c.1719	p.A573	0.108	HMMPfam_TAP_C,HMMSmart_TAP_C,superfamily_UBA_like	HMMPfam_LRR_1,HMMPfam_NTF2,HMMSmart_LRRcap,HMMPfam_TAP_C,HMMSmart_TAP_C,superfamily_UBA_like,HMMPfam_Tap-RNA_bind,superfamily_SSF52058,superfamily_SSF54427,superfamily_SSF54928	-	no_errors
OBSCN	0	genome.wustl.edu	37	1	228495195	228495195	+	Silent	SNP	A	A	T	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	1	228495195	228495195	A	T	SNP	OBSCN	NM_001098623.1	human	genbank	58_37c	+1	reviewed	silent	c.12429	p.T4143	0.047	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin	HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),HMMSmart_SM00219,HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00220,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,PatternScan_PROTEIN_KINASE_TYR,PatternScan_PROTEIN_KINASE_ST,superfamily_Fibronectin type III,superfamily_Protein kinase-like (PK-like),HMMPfam_I-set,HMMPfam_V-set,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,PatternScan_GLYCOSYL_HYDROL_F5,superfamily_Immunoglobulin,superfamily_PH domain-like	-	no_errors
OR2L1P	0	genome.wustl.edu	37	1	248153842	248153842	+	RNA	SNP	C	C	A	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	1	248153842	248153842	C	A	SNP	OR2L1P	NR_002145.1	human	genbank	58_37c	+1	provisional	rna	NULL	NULL	0.089	-	-	-	pseudogene
OR52K2	0	genome.wustl.edu	37	11	4470851	4470851	+	Silent	SNP	A	A	T	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	11	4470851	4470851	A	T	SNP	OR52K2	NM_001005172.2	human	genbank	58_37c	+1	validated	silent	c.282	p.I94	0.001	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
OTOF	0	genome.wustl.edu	37	2	26693990	26693990	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	2	26693990	26693990	A	C	SNP	OTOF	NM_194248.2	human	genbank	58_37c	-1	reviewed	missense	c.3893	p.V1298G	1.000	NULL	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_FerB,HMMPfam_FerI	-	no_errors
PCDHGA1	0	genome.wustl.edu	37	5	140710475	140710475	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	5	140710475	140710475	T	C	SNP	PCDHGA1	NM_018912.2	human	genbank	58_37c	+1	reviewed	missense	c.224	p.F75S	0.996	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like	-	no_errors
PHF8	0	genome.wustl.edu	37	X	53966853	53966853	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	X	53966853	53966853	T	A	SNP	PHF8	NM_015107.2	human	genbank	58_37c	-1	reviewed	missense	c.2746	p.T916S	0.012	NULL	HMMSmart_SM00249,HMMSmart_SM00558,superfamily_FYVE/PHD zinc finger,PatternScan_EGF_2,HMMPfam_JmjC,PatternScan_ZF_PHD_1,HMMPfam_PHD,superfamily_Clavaminate synthase-like	-	no_errors
PHKA2	0	genome.wustl.edu	37	X	18961899	18961899	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	X	18961899	18961899	C	A	SNP	PHKA2	NM_000292.2	human	genbank	58_37c	-1	reviewed	missense	c.646	p.D216Y	1.000	HMMPfam_PHK_AB,superfamily_Six-hairpin glycosidases	HMMPfam_PHK_AB,superfamily_Six-hairpin glycosidases	-	no_errors
PLCH1	0	genome.wustl.edu	37	3	155210555	155210555	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	3	155210555	155210555	G	A	SNP	PLCH1	NM_001130960.1	human	genbank	58_37c	-1	validated	missense	c.2234	p.P745L	1.000	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	HMMPfam_C2,HMMSmart_SM00239,HMMPfam_PI-PLC-X,HMMSmart_SM00148,HMMPfam_PI-PLC-Y,HMMSmart_SM00149,HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00054,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_efhand_like,superfamily_PLC-like phosphodiesterases,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_EF-hand,superfamily_PH domain-like	-	no_errors
PLEKHM3	0	genome.wustl.edu	37	2	208865794	208865794	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	2	208865794	208865794	C	A	SNP	PLEKHM3	NM_001080475.2	human	genbank	58_37c	-1	validated	missense	c.570	p.L190F	0.000	NULL	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like	-	no_errors
POGZ	0	genome.wustl.edu	37	1	151377893	151377893	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	1	151377893	151377893	C	G	SNP	POGZ	NM_015100.2	human	genbank	58_37c	-1	reviewed	missense	c.3618	p.E1206D	1.000	HMMPfam_DDE	HMMPfam_DDE,HMMSmart_SM00674,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Homeodomain-like,HMMPfam_CenpB-DNA-bind,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
PRDM10	0	genome.wustl.edu	37	11	129817174	129817174	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	11	129817174	129817174	C	A	SNP	PRDM10	NM_020228.2	human	genbank	58_37c	-1	reviewed	missense	c.386	p.R129I	0.765	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
RAP2B	0	genome.wustl.edu	37	3	152880777	152880777	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	3	152880777	152880777	C	T	SNP	RAP2B	NM_002886.2	human	genbank	58_37c	+1	reviewed	nonsense	c.295	p.Q99*	1.000	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
RNASE9	0	genome.wustl.edu	37	14	21024763	21024763	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	14	21024763	21024763	C	T	SNP	RNASE9	NM_001001673.3	human	genbank	58_37c	-1	provisional	missense	c.466	p.E156K	0.000	superfamily_RNase A-like	superfamily_RNase A-like	-	no_errors
ROS1	0	genome.wustl.edu	37	6	117632212	117632212	+	Silent	SNP	G	G	C	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	6	117632212	117632212	G	C	SNP	ROS1	NM_002944.2	human	genbank	58_37c	-1	reviewed	silent	c.6204	p.V2068	0.999	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like	HMMSmart_LY,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_RECEPTOR_TYR_KIN_II,HMMPfam_fn3,HMMSmart_FN3,PatternScan_PROTEIN_KINASE_TYR,superfamily_FN_III-like,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF63825	-	no_errors
RYR3	0	genome.wustl.edu	37	15	33955918	33955918	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	15	33955918	33955918	C	T	SNP	RYR3	NM_001036.3	human	genbank	58_37c	+1	validated	missense	c.5599	p.R1867C	1.000	NULL	HMMPfam_RYDR_ITPR,HMMPfam_RyR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_SPRY,HMMPfam_Ion_trans,HMMPfam_RR_TM4-6,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMPfam_efhand,HMMSmart_SM00449,superfamily_EF-hand	-	no_errors
SCML2	0	genome.wustl.edu	37	X	18342120	18342120	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	X	18342120	18342120	T	C	SNP	SCML2	NM_006089.2	human	genbank	58_37c	-1	validated	missense	c.256	p.I86V	0.394	HMMPfam_MBT,HMMSmart_SM00561,superfamily_Tudor/PWWP/MBT	HMMPfam_SAM_1,HMMSmart_SM00454,HMMPfam_MBT,HMMSmart_SM00561,superfamily_SAM/Pointed domain,superfamily_Tudor/PWWP/MBT	-	no_errors
SEMA4F	0	genome.wustl.edu	37	2	74883757	74883757	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	2	74883757	74883757	C	T	SNP	SEMA4F	NM_004263.3	human	genbank	58_37c	+1	provisional	missense	c.242	p.A81V	1.000	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain,HMMPfam_PSI,HMMSmart_SM00423,superfamily_Plexin repeat	-	no_errors
SLC24A4	0	genome.wustl.edu	37	14	92792293	92792293	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	14	92792293	92792293	C	A	SNP	SLC24A4	NM_153646.2	human	genbank	58_37c	+1	validated	missense	c.161	p.T54K	0.969	NULL	HMMPfam_Na_Ca_ex	-	no_errors
SMEK2	0	genome.wustl.edu	37	2	55795499	55795499	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	2	55795499	55795499	C	T	SNP	SMEK2	NM_001122964.1	human	genbank	58_37c	-1	validated	missense	c.1766	p.C589Y	1.000	superfamily_ARM repeat	HMMPfam_DUF625,superfamily_ARM repeat,superfamily_PH domain-like	-	no_errors
SNX7	0	genome.wustl.edu	37	1	99157223	99157223	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	1	99157223	99157223	G	C	SNP	SNX7	NM_015976.3	human	genbank	58_37c	+1	reviewed	missense	c.607	p.D203H	1.000	HMMPfam_PX,HMMSmart_PX,superfamily_PX	HMMPfam_PX,HMMSmart_PX,superfamily_PX	-	no_errors
SRM	0	genome.wustl.edu	37	1	11119330	11119330	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	1	11119330	11119330	C	G	SNP	SRM	NM_003132.2	human	genbank	58_37c	-1	validated	missense	c.240	p.Q80H	1.000	HMMPfam_Spermine_synth,superfamily_S-adenosyl-L-methionine-dependent methyltransferases	HMMPfam_Spermine_synth,PatternScan_SPERMIDINE_SYNTHASE_1,superfamily_S-adenosyl-L-methionine-dependent methyltransferases	-	no_errors
SSTR5	0	genome.wustl.edu	37	16	1129135	1129135	+	Silent	SNP	C	C	T	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	16	1129135	1129135	C	T	SNP	SSTR5	NM_001053.3	human	genbank	58_37c	+1	reviewed	silent	c.267	p.Y89	1.000	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
STK31	0	genome.wustl.edu	37	7	23793941	23793941	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	7	23793941	23793941	G	T	SNP	STK31	NM_031414.3	human	genbank	58_37c	+1	reviewed	missense	c.1141	p.D381Y	0.135	NULL	HMMSmart_SM00220,HMMSmart_SM00333,HMMPfam_TUDOR,superfamily_Protein kinase-like (PK-like),superfamily_Tudor/PWWP/MBT	-	no_errors
TTN	0	genome.wustl.edu	37	2	179442485	179442485	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	2	179442485	179442485	T	C	SNP	TTN	ENST00000356127	human	ensembl	58_37c	-1	known	missense	c.60958	p.K20320E	1.000	HMMPfam_fn3,HMMSmart_SM00060	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_IG_MHC,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_PPAK,PatternScan_PROTEIN_KINASE_TYR,HMMPfam_I-set,HMMPfam_ig,HMMPfam_Titin_Z,HMMPfam_Pkinase,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1	-	no_errors
TTN	0	genome.wustl.edu	37	2	179474059	179474059	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	2	179474059	179474059	G	T	SNP	TTN	ENST00000356127	human	ensembl	58_37c	-1	known	missense	c.44274	p.N14758K	0.077	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_IG_MHC,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_PPAK,PatternScan_PROTEIN_KINASE_TYR,HMMPfam_I-set,HMMPfam_ig,HMMPfam_Titin_Z,HMMPfam_Pkinase,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1	-	no_errors
TTPA	0	genome.wustl.edu	37	8	63978530	63978530	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	8	63978530	63978530	C	A	SNP	TTPA	NM_000370.3	human	genbank	58_37c	-1	reviewed	missense	c.485	p.G162V	0.999	HMMPfam_CRAL_TRIO,HMMSmart_SEC14,superfamily_CRAL_TRIO_C	HMMPfam_CRAL_TRIO,HMMSmart_SEC14,superfamily_CRAL_TRIO_C,HMMPfam_CRAL_TRIO_N,superfamily_Sec14p_like_N	-	no_errors
USP3	0	genome.wustl.edu	37	15	63866266	63866266	+	Silent	SNP	C	C	T	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	15	63866266	63866266	C	T	SNP	USP3	NM_006537.2	human	genbank	58_37c	+1	validated	silent	c.930	p.V310	1.000	HMMPfam_UCH,superfamily_SSF54001	HMMPfam_UCH,HMMPfam_zf-UBP,PatternScan_UCH_2_1,PatternScan_UCH_2_2,superfamily_SSF54001	-	no_errors
USP3	0	genome.wustl.edu	37	15	63866545	63866545	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	15	63866545	63866545	C	T	SNP	USP3	NM_006537.2	human	genbank	58_37c	+1	validated	nonsense	c.1039	p.Q347*	1.000	HMMPfam_UCH,superfamily_SSF54001	HMMPfam_UCH,HMMPfam_zf-UBP,PatternScan_UCH_2_1,PatternScan_UCH_2_2,superfamily_SSF54001	-	no_errors
USP39	0	genome.wustl.edu	37	2	85850804	85850804	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	2	85850804	85850804	G	A	SNP	USP39	NM_006590.2	human	genbank	58_37c	+1	validated	missense	c.469	p.V157I	1.000	HMMSmart_SM00290	HMMPfam_UCH,HMMSmart_SM00290,superfamily_Cysteine proteinases	-	no_errors
USP48	0	genome.wustl.edu	37	1	22084163	22084163	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	1	22084163	22084163	C	G	SNP	USP48	NM_032236.5	human	genbank	58_37c	-1	reviewed	missense	c.248	p.R83T	1.000	superfamily_Cysteine proteinases	HMMPfam_UCH,PatternScan_UCH_2_2,superfamily_Cysteine proteinases,superfamily_Ubiquitin-like	-	no_errors
VPS26B	0	genome.wustl.edu	37	11	134104810	134104810	+	Silent	SNP	G	G	T	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	11	134104810	134104810	G	T	SNP	VPS26B	NM_052875.3	human	genbank	58_37c	+1	validated	silent	c.243	p.G81	0.997	HMMPfam_Vps26	HMMPfam_Vps26	-	no_errors
WDR59	0	genome.wustl.edu	37	16	74946204	74946204	+	Silent	SNP	G	G	C	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	16	74946204	74946204	G	C	SNP	WDR59	NM_030581.3	human	genbank	58_37c	-1	validated	silent	c.1281	p.V427	0.996	HMMSmart_SM00591	HMMSmart_SM00320,PatternScan_EGF_LAM_1,HMMSmart_SM00591,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
ZC3H13	0	genome.wustl.edu	37	13	46619585	46619585	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	13	46619585	46619585	T	G	SNP	ZC3H13	NM_015070.3	human	genbank	58_37c	-1	validated	missense	c.58	p.T20P	1.000	NULL	HMMPfam_zf-CCCH,HMMSmart_ZnF_C3H1,superfamily_SSF90229	-	no_errors
ZNF333	0	genome.wustl.edu	37	19	14805918	14805918	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	19	14805918	14805918	G	C	SNP	ZNF333	NM_032433.2	human	genbank	58_37c	+1	validated	missense	c.100	p.D34H	0.013	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
ZNF333	0	genome.wustl.edu	37	19	14829928	14829928	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	19	14829928	14829928	C	T	SNP	ZNF333	NM_032433.2	human	genbank	58_37c	+1	validated	nonsense	c.1789	p.R597*	0.877	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
ZNF431	0	genome.wustl.edu	37	19	21365513	21365513	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	19	21365513	21365513	A	G	SNP	ZNF431	NM_133473.2	human	genbank	58_37c	+1	validated	missense	c.407	p.K136R	0.001	NULL	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF720P1	0	genome.wustl.edu	37	16	31613582	31613582	+	Silent	SNP	T	T	A	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	16	31613582	31613582	T	A	SNP	ZNF720P1	ENST00000398707	human	ensembl	58_37c	-1	known	silent	c.444	p.G148	1.000	superfamily_C2H2 and C2HC zinc fingers	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_start_codon:no_stop_codon
ZNF841	0	genome.wustl.edu	37	19	52579393	52579393	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	19	52579393	52579393	T	G	SNP	ZNF841	NM_001136499.1	human	genbank	58_37c	-1	validated	missense	c.175	p.M59L	0.000	HMMSmart_KRAB,superfamily_Krueppel-associated_box	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,PatternScan_IG_MHC,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
ZNF853	0	genome.wustl.edu	37	7	6661429	6661429	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-GI-A2C8-01A-11D-A16D-09	TCGA-GI-A2C8-11A-22D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	535a899d-67ca-4500-8dda-63a331a3611c	2ec9bc9e-0d87-48ed-bccf-679c08d9c5a4	7	6661429	6661429	G	T	SNP	ZNF853	NM_017560.1	human	genbank	58_37c	+1	provisional	missense	c.807	p.Q269H	0.035	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
