Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
PRAMEF12	390999	genome.wustl.edu	37	1	12835286	12835286	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0MU-01A-11D-A10B-09	TCGA-BG-A0MU-10A-02D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ccf4fd2-7f79-43a4-9743-320e93b28e1b	b6349770-b4e0-435d-b127-6e90c2af457f	NM_001080830.1	+1	provisional	p.K92	0.129	74	0%	155	38.1%	0	-	-	-	-	superfamily_SSF52047
MAN1C1	57134	genome.wustl.edu	37	1	26012988	26012988	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MU-01A-11D-A10B-09	TCGA-BG-A0MU-10A-02D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ccf4fd2-7f79-43a4-9743-320e93b28e1b	b6349770-b4e0-435d-b127-6e90c2af457f	NM_020379.2	+1	validated	p.R200C	1.000	107	0%	210	43.8%	6	66.6%	possibly_damaging(0.865)	deleterious(0)	deleterious(0.780)	HMMPfam_Glyco_hydro_47,superfamily_Glyco_hydro_47
GJB5	2709	genome.wustl.edu	37	1	35223223	35223223	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MU-01A-11D-A10B-09	TCGA-BG-A0MU-10A-02D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ccf4fd2-7f79-43a4-9743-320e93b28e1b	b6349770-b4e0-435d-b127-6e90c2af457f	NM_005268.2	+1	provisional	p.R98W	1.000	65	0%	180	43.3%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Connexin
KCNC4	3749	genome.wustl.edu	37	1	110754204	110754204	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BG-A0MU-01A-11D-A10B-09	TCGA-BG-A0MU-10A-02D-A10B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ccf4fd2-7f79-43a4-9743-320e93b28e1b	b6349770-b4e0-435d-b127-6e90c2af457f	NM_004978.3	+1	reviewed	p.E28V	1.000	41	0%	128	39.8%	1	0%	probably_damaging(0.99)	deleterious(0.04)	deleterious(0.790)	NULL
GJA8	2703	genome.wustl.edu	37	1	147380446	147380446	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MU-01A-11D-A10B-09	TCGA-BG-A0MU-10A-02D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ccf4fd2-7f79-43a4-9743-320e93b28e1b	b6349770-b4e0-435d-b127-6e90c2af457f	NM_005267.4	+1	reviewed	p.G122S	0.988	57	0%	241	31.5%	0	-	benign(0.007)	tolerated(0.6)	neutral(0.004)	HMMPfam_Connexin
SEMA6C	10500	genome.wustl.edu	37	1	151112557	151112557	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MU-01A-11D-A10B-09	TCGA-BG-A0MU-10A-02D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ccf4fd2-7f79-43a4-9743-320e93b28e1b	b6349770-b4e0-435d-b127-6e90c2af457f	NM_030913.4	-1	reviewed	p.P43L	0.964	27	0%	135	32.6%	1	0%	benign(0.009)	tolerated(0.31)	neutral(0.028)	superfamily_Sema domain
SNX27	81609	genome.wustl.edu	37	1	151665938	151665938	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MU-01A-11D-A10B-09	TCGA-BG-A0MU-10A-02D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ccf4fd2-7f79-43a4-9743-320e93b28e1b	b6349770-b4e0-435d-b127-6e90c2af457f	NM_030918.5	+1	reviewed	p.C519	1.000	285	0%	909	12.9%	1	0%	-	-	-	NULL
PGBD5	79605	genome.wustl.edu	37	1	230492779	230492779	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MU-01A-11D-A10B-09	TCGA-BG-A0MU-10A-02D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ccf4fd2-7f79-43a4-9743-320e93b28e1b	b6349770-b4e0-435d-b127-6e90c2af457f	NM_024554.3	-1	reviewed	p.R237H	1.000	26	0%	156	33.3%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
XDH	7498	genome.wustl.edu	37	2	31621529	31621529	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0MU-01A-11D-A10B-09	TCGA-BG-A0MU-10A-02D-A10B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ccf4fd2-7f79-43a4-9743-320e93b28e1b	b6349770-b4e0-435d-b127-6e90c2af457f	NM_000379.3	-1	reviewed	p.F115L	0.999	73	0%	102	41.2%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Fer2_2,superfamily_2Fe-2S_bind
BCL11A	53335	genome.wustl.edu	37	2	60688811	60688811	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0MU-01A-11D-A10B-09	TCGA-BG-A0MU-10A-02D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ccf4fd2-7f79-43a4-9743-320e93b28e1b	b6349770-b4e0-435d-b127-6e90c2af457f	NM_022893.3	-1	reviewed	p.H412	1.000	28	0%	159	47.2%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ADRA2B	151	genome.wustl.edu	37	2	96780986	96780987	+	In_Frame_Ins	INS	-	-	TCCTCCTCT	rs4426564	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-BG-A0MU-01A-11D-A10B-09	TCGA-BG-A0MU-10A-02D-A10B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ccf4fd2-7f79-43a4-9743-320e93b28e1b	b6349770-b4e0-435d-b127-6e90c2af457f	ENST00000409345	-1	known	p.305in_frame_insEEE	0.205:0.289	-	-	-	-	-	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
UNC80	285175	genome.wustl.edu	37	2	210858874	210858874	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0MU-01A-11D-A10B-09	TCGA-BG-A0MU-10A-02D-A10B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ccf4fd2-7f79-43a4-9743-320e93b28e1b	b6349770-b4e0-435d-b127-6e90c2af457f	NM_032504.1	+1	validated	p.Q3132	0.768	37	0%	73	31.5%	0	-	-	-	-	NULL
CTNNB1	1499	genome.wustl.edu	37	3	41266103	41266103	+	Missense_Mutation	SNP	G	G	A	rs121913399		TCGA-BG-A0MU-01A-11D-A10B-09	TCGA-BG-A0MU-10A-02D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ccf4fd2-7f79-43a4-9743-320e93b28e1b	b6349770-b4e0-435d-b127-6e90c2af457f	NM_001098209.1	+1	reviewed	p.G34R	1.000	90	0%	89	41.6%	59	35.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FAM3D	131177	genome.wustl.edu	37	3	58652301	58652387	+	Splice_Site	DEL	GGGGGACGTACCCGAGGGCTCGAGGCTCCCACTTCCCTGCTTCGATGGAGAAGGCGAGGTGGTCCAGCAGGTGCCGTAGGTCCCTGA	GGGGGACGTACCCGAGGGCTCGAGGCTCCCACTTCCCTGCTTCGATGGAGAAGGCGAGGTGGTCCAGCAGGTGCCGTAGGTCCCTGA	-	novel		TCGA-BG-A0MU-01A-11D-A10B-09	TCGA-BG-A0MU-10A-02D-A10B-09	GGGGGACGTACCCGAGGGCTCGAGGCTCCCACTTCCCTGCTTCGATGGAGAAGGCGAGGTGGTCCAGCAGGTGCCGTAGGTCCCTGA	GGGGGACGTACCCGAGGGCTCGAGGCTCCCACTTCCCTGCTTCGATGGAGAAGGCGAGGTGGTCCAGCAGGTGCCGTAGGTCCCTGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ccf4fd2-7f79-43a4-9743-320e93b28e1b	b6349770-b4e0-435d-b127-6e90c2af457f	NM_138805.2	-1	validated	e0+1	0.989:1.000	-	-	-	-	-	-	-	-	-	-
CLDN11	5010	genome.wustl.edu	37	3	170150485	170150485	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MU-01A-11D-A10B-09	TCGA-BG-A0MU-10A-02D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ccf4fd2-7f79-43a4-9743-320e93b28e1b	b6349770-b4e0-435d-b127-6e90c2af457f	NM_005602.5	+1	reviewed	p.R189C	1.000	134	0%	264	45.8%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FNDC3B	64778	genome.wustl.edu	37	3	171969146	171969146	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0MU-01A-11D-A10B-09	TCGA-BG-A0MU-10A-02D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ccf4fd2-7f79-43a4-9743-320e93b28e1b	b6349770-b4e0-435d-b127-6e90c2af457f	NM_001135095.1	+1	validated	p.R202L	1.000	118	0%	91	48.4%	4	50%	probably_damaging(0.992)	tolerated(0.27)	deleterious(0.481)	NULL
ENSG00000206932	0	genome.wustl.edu	37	3	180949578	180949578	+	RNA	SNP	G	G	T	novel		TCGA-BG-A0MU-01A-11D-A10B-09	TCGA-BG-A0MU-10A-02D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ccf4fd2-7f79-43a4-9743-320e93b28e1b	b6349770-b4e0-435d-b127-6e90c2af457f	ENST00000384205	+1	known	NULL	0.000	217	0%	82	13.4%	1	0%	-	-	-	-
GABRB1	2560	genome.wustl.edu	37	4	47405580	47405580	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0MU-01A-11D-A10B-09	TCGA-BG-A0MU-10A-02D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ccf4fd2-7f79-43a4-9743-320e93b28e1b	b6349770-b4e0-435d-b127-6e90c2af457f	NM_000812.3	+1	reviewed	p.A229	0.892	263	0%	419	44.2%	0	-	-	-	-	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD
ADAMTS3	9508	genome.wustl.edu	37	4	73179418	73179418	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MU-01A-11D-A10B-09	TCGA-BG-A0MU-10A-02D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ccf4fd2-7f79-43a4-9743-320e93b28e1b	b6349770-b4e0-435d-b127-6e90c2af457f	NM_014243.1	-1	reviewed	p.R574K	1.000	126	0%	86	45.3%	0	-	probably_damaging(0.999)	tolerated(0.12)	deleterious(0.751)	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
DNAH5	1767	genome.wustl.edu	37	5	13839593	13839593	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BG-A0MU-01A-11D-A10B-09	TCGA-BG-A0MU-10A-02D-A10B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ccf4fd2-7f79-43a4-9743-320e93b28e1b	b6349770-b4e0-435d-b127-6e90c2af457f	NM_001369.2	-1	reviewed	p.K1918N	1.000	136	0%	132	31.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PIK3R1	5295	genome.wustl.edu	37	5	67591143	67591145	+	In_Frame_Del	DEL	AAT	AAT	-	novel		TCGA-BG-A0MU-01A-11D-A10B-09	TCGA-BG-A0MU-10A-02D-A10B-09	AAT	AAT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ccf4fd2-7f79-43a4-9743-320e93b28e1b	b6349770-b4e0-435d-b127-6e90c2af457f	NM_181523.1	+1	reviewed	p.QY579in_frame_delH	1.000:0.989:1.000	-	-	-	-	-	-	-	-	-	NULL
PCDHGA4	56111	genome.wustl.edu	37	5	140735310	140735310	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MU-01A-11D-A10B-09	TCGA-BG-A0MU-10A-02D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ccf4fd2-7f79-43a4-9743-320e93b28e1b	b6349770-b4e0-435d-b127-6e90c2af457f	NM_018917.2	+1	reviewed	p.D181	0.002	89	1.1%	197	45.7%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
GRIA1	2890	genome.wustl.edu	37	5	153190730	153190730	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MU-01A-11D-A10B-09	TCGA-BG-A0MU-10A-02D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ccf4fd2-7f79-43a4-9743-320e93b28e1b	b6349770-b4e0-435d-b127-6e90c2af457f	NM_000827.3	+1	reviewed	p.S889L	1.000	54	0%	67	46.3%	0	-	benign(0.002)	deleterious(0.01)	neutral(0.406)	NULL
CYFIP2	26999	genome.wustl.edu	37	5	156734821	156734821	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0MU-01A-11D-A10B-09	TCGA-BG-A0MU-10A-02D-A10B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ccf4fd2-7f79-43a4-9743-320e93b28e1b	b6349770-b4e0-435d-b127-6e90c2af457f	NM_001037332.2	+1	validated	p.K283R	1.000	162	0%	293	44.4%	0	-	benign(0.325)	tolerated(0.21)	neutral(0.146)	HMMPfam_FragX_IP
HIST1H2BL	8340	genome.wustl.edu	37	6	27775672	27775672	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MU-01A-11D-A10B-09	TCGA-BG-A0MU-10A-02D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ccf4fd2-7f79-43a4-9743-320e93b28e1b	b6349770-b4e0-435d-b127-6e90c2af457f	NM_003519.3	-1	reviewed	p.A5T	0.995	127	0%	415	41%	0	-	benign(0.092)	deleterious(0.04)	neutral(0.356)	superfamily_Histone-fold
DEF6	50619	genome.wustl.edu	37	6	35280146	35280146	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BG-A0MU-01A-11D-A10B-09	TCGA-BG-A0MU-10A-02D-A10B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ccf4fd2-7f79-43a4-9743-320e93b28e1b	b6349770-b4e0-435d-b127-6e90c2af457f	NM_022047.3	+1	validated	p.E164A	1.000	54	0%	129	34.1%	5	0%	benign(0.003)	tolerated(0.07)	neutral(0.319)	superfamily_SSF47473
TULP1	7287	genome.wustl.edu	37	6	35478782	35478782	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MU-01A-11D-A10B-09	TCGA-BG-A0MU-10A-02D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ccf4fd2-7f79-43a4-9743-320e93b28e1b	b6349770-b4e0-435d-b127-6e90c2af457f	NM_003322.3	-1	reviewed	p.E119K	0.157	49	0%	147	44.2%	0	-	benign(0.039)	deleterious(0.03)	neutral(0.366)	NULL
DNAH8	1769	genome.wustl.edu	37	6	38840725	38840725	+	Silent	SNP	C	C	A	novel		TCGA-BG-A0MU-01A-11D-A10B-09	TCGA-BG-A0MU-10A-02D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ccf4fd2-7f79-43a4-9743-320e93b28e1b	b6349770-b4e0-435d-b127-6e90c2af457f	NM_001371.2	+1	validated	p.I2210	0.996	165	0%	136	39%	0	-	-	-	-	HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases
FBXL4	26235	genome.wustl.edu	37	6	99322298	99322298	+	Silent	SNP	C	C	A	novel		TCGA-BG-A0MU-01A-11D-A10B-09	TCGA-BG-A0MU-10A-02D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ccf4fd2-7f79-43a4-9743-320e93b28e1b	b6349770-b4e0-435d-b127-6e90c2af457f	NM_012160.3	-1	reviewed	p.P574	0.002	175	0%	110	34.5%	14	50%	-	-	-	superfamily_SSF52047
ESR1	2099	genome.wustl.edu	37	6	152419926	152419926	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0MU-01A-11D-A10B-09	TCGA-BG-A0MU-10A-02D-A10B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ccf4fd2-7f79-43a4-9743-320e93b28e1b	b6349770-b4e0-435d-b127-6e90c2af457f	NM_000125.3	+1	reviewed	p.D538G	1.000	95	0%	231	42%	38	60.5%	benign(0.033)	deleterious(0)	neutral(0.446)	HMMPfam_Hormone_recep,superfamily_Nuclear receptor ligand-binding domain
PRKAR1B	5575	genome.wustl.edu	37	7	716925	716925	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MU-01A-11D-A10B-09	TCGA-BG-A0MU-10A-02D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ccf4fd2-7f79-43a4-9743-320e93b28e1b	b6349770-b4e0-435d-b127-6e90c2af457f	NM_002735.2	-1	validated	p.A127	0.794	65	0%	335	45.4%	32	53.1%	-	-	-	superfamily_cNMP_binding
POM121L12	285877	genome.wustl.edu	37	7	53104173	53104173	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MU-01A-11D-A10B-09	TCGA-BG-A0MU-10A-02D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ccf4fd2-7f79-43a4-9743-320e93b28e1b	b6349770-b4e0-435d-b127-6e90c2af457f	NM_182595.3	+1	validated	p.A270V	0.000	21	0%	100	45%	0	-	probably_damaging(0.988)	-	-	NULL
RFC2	5982	genome.wustl.edu	37	7	73663357	73663357	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0MU-01A-11D-A10B-09	TCGA-BG-A0MU-10A-02D-A10B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ccf4fd2-7f79-43a4-9743-320e93b28e1b	b6349770-b4e0-435d-b127-6e90c2af457f	NM_181471.1	-1	reviewed	p.N106S	1.000	55	0%	172	41.9%	20	30%	possibly_damaging(0.821)	deleterious(0)	deleterious(0.755)	HMMSmart_SM00382,HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases
TAS2R3	50831	genome.wustl.edu	37	7	141464155	141464155	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BG-A0MU-01A-11D-A10B-09	TCGA-BG-A0MU-10A-02D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ccf4fd2-7f79-43a4-9743-320e93b28e1b	b6349770-b4e0-435d-b127-6e90c2af457f	NM_016943.2	+1	reviewed	p.S66T	0.000	245	0%	272	39.7%	0	-	benign(0)	tolerated(0.84)	neutral(0.001)	HMMPfam_TAS2R,superfamily_Family A G protein-coupled receptor-like
BMP1	649	genome.wustl.edu	37	8	22033748	22033748	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MU-01A-11D-A10B-09	TCGA-BG-A0MU-10A-02D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ccf4fd2-7f79-43a4-9743-320e93b28e1b	b6349770-b4e0-435d-b127-6e90c2af457f	NM_006129.4	+1	reviewed	p.R119W	0.990	50	0%	241	46.1%	8	50%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ZCCHC7	84186	genome.wustl.edu	37	9	37126625	37126625	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BG-A0MU-01A-11D-A10B-09	TCGA-BG-A0MU-10A-02D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ccf4fd2-7f79-43a4-9743-320e93b28e1b	b6349770-b4e0-435d-b127-6e90c2af457f	NM_032226.2	+1	validated	p.S99T	1.000	163	0%	250	46.8%	3	33.3%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
SARDH	1757	genome.wustl.edu	37	9	136582508	136582508	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MU-01A-11D-A10B-09	TCGA-BG-A0MU-10A-02D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ccf4fd2-7f79-43a4-9743-320e93b28e1b	b6349770-b4e0-435d-b127-6e90c2af457f	NM_001134707.1	-1	reviewed	p.A364T	1.000	85	0%	284	41.5%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_DAO,superfamily_SSF51905,superfamily_SSF54373
PTEN	5728	genome.wustl.edu	37	10	89692904	89692904	+	Missense_Mutation	SNP	C	C	G	rs121909224	byCluster	TCGA-BG-A0MU-01A-11D-A10B-09	TCGA-BG-A0MU-10A-02D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ccf4fd2-7f79-43a4-9743-320e93b28e1b	b6349770-b4e0-435d-b127-6e90c2af457f	ENST00000371953	+1	known	p.R130G	1.000	272	0%	228	86%	27	88.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DSPc,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II
SORCS3	22986	genome.wustl.edu	37	10	106982945	106982945	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0MU-01A-11D-A10B-09	TCGA-BG-A0MU-10A-02D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ccf4fd2-7f79-43a4-9743-320e93b28e1b	b6349770-b4e0-435d-b127-6e90c2af457f	NM_014978.1	+1	reviewed	p.V936F	0.795	206	0%	189	47.6%	0	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	superfamily_PKD
OR4A15	81328	genome.wustl.edu	37	11	55136063	55136063	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0MU-01A-11D-A10B-09	TCGA-BG-A0MU-10A-02D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ccf4fd2-7f79-43a4-9743-320e93b28e1b	b6349770-b4e0-435d-b127-6e90c2af457f	NM_001005275.1	+1	provisional	p.C235F	0.004	281	0%	275	43.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
OR5D14	219436	genome.wustl.edu	37	11	55563545	55563545	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MU-01A-11D-A10B-09	TCGA-BG-A0MU-10A-02D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ccf4fd2-7f79-43a4-9743-320e93b28e1b	b6349770-b4e0-435d-b127-6e90c2af457f	NM_001004735.1	+1	provisional	p.G172R	0.015	246	0%	376	40.7%	0	-	benign(0.085)	tolerated(0.33)	neutral(0.030)	HMMPfam_7tm_1,superfamily_SSF81321
ODZ4	26011	genome.wustl.edu	37	11	78775836	78775836	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0MU-01A-11D-A10B-09	TCGA-BG-A0MU-10A-02D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ccf4fd2-7f79-43a4-9743-320e93b28e1b	b6349770-b4e0-435d-b127-6e90c2af457f	NM_001098816.2	-1	validated	p.R147L	1.000	31	0%	103	33%	0	-	probably_damaging(0.966)	deleterious(0.01)	deleterious(0.814)	HMMPfam_Ten_N
C11orf63	79864	genome.wustl.edu	37	11	122756861	122756861	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BG-A0MU-01A-11D-A10B-09	TCGA-BG-A0MU-10A-02D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ccf4fd2-7f79-43a4-9743-320e93b28e1b	b6349770-b4e0-435d-b127-6e90c2af457f	NM_024806.2	+1	validated	p.E102fs	0.000	-	-	-	-	-	-	-	-	-	NULL
OR8B8	26493	genome.wustl.edu	37	11	124310940	124310940	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0MU-01A-11D-A10B-09	TCGA-BG-A0MU-10A-02D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ccf4fd2-7f79-43a4-9743-320e93b28e1b	b6349770-b4e0-435d-b127-6e90c2af457f	NM_012378.1	-1	provisional	p.L14	0.817	78	0%	127	44.1%	0	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
CLSTN3	9746	genome.wustl.edu	37	12	7287934	7287948	+	In_Frame_Del	DEL	ATGTGCGGGTCAACG	ATGTGCGGGTCAACG	-	novel		TCGA-BG-A0MU-01A-11D-A10B-09	TCGA-BG-A0MU-10A-02D-A10B-09	ATGTGCGGGTCAACG	ATGTGCGGGTCAACG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ccf4fd2-7f79-43a4-9743-320e93b28e1b	b6349770-b4e0-435d-b127-6e90c2af457f	NM_014718.3	+1	validated	p.RVNDV134in_frame_del	0.999:0.394:1.000:1.000:0.998:1.000:1.000:0.988:1.000:1.000:0.984:1.000:0.998:0.043:0.998	-	-	-	-	-	-	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
KLRC4	8302	genome.wustl.edu	37	12	10560952	10560952	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0MU-01A-11D-A10B-09	TCGA-BG-A0MU-10A-02D-A10B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ccf4fd2-7f79-43a4-9743-320e93b28e1b	b6349770-b4e0-435d-b127-6e90c2af457f	NM_013431.2	-1	reviewed	p.S106P	0.000	175	0%	169	55%	1	0%	probably_damaging(0.971)	tolerated(0.1)	deleterious(0.700)	NULL
ENSG00000183935	0	genome.wustl.edu	37	12	13153388	13153389	+	In_Frame_Ins	INS	-	-	GCAGCAGTCCAGCAGTGCAGCAGT	rs77117939		TCGA-BG-A0MU-01A-11D-A10B-09	TCGA-BG-A0MU-10A-02D-A10B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ccf4fd2-7f79-43a4-9743-320e93b28e1b	b6349770-b4e0-435d-b127-6e90c2af457f	ENST00000331998	+1	known	p.129in_frame_insPAVQQCSS	0.055:0.003	-	-	-	-	-	-	-	-	-	NULL
SLC4A8	9498	genome.wustl.edu	37	12	51864212	51864212	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MU-01A-11D-A10B-09	TCGA-BG-A0MU-10A-02D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ccf4fd2-7f79-43a4-9743-320e93b28e1b	b6349770-b4e0-435d-b127-6e90c2af457f	NM_001039960.1	+1	validated	p.G521R	1.000	358	0%	295	43.4%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HCO3_cotransp
LATS2	26524	genome.wustl.edu	37	13	21619928	21619928	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BG-A0MU-01A-11D-A10B-09	TCGA-BG-A0MU-10A-02D-A10B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ccf4fd2-7f79-43a4-9743-320e93b28e1b	b6349770-b4e0-435d-b127-6e90c2af457f	NM_014572.2	-1	reviewed	p.I80fs	1.000	-	-	-	-	-	-	-	-	-	NULL
SPTB	6710	genome.wustl.edu	37	14	65250971	65250971	+	Silent	SNP	G	G	T	novel		TCGA-BG-A0MU-01A-11D-A10B-09	TCGA-BG-A0MU-10A-02D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ccf4fd2-7f79-43a4-9743-320e93b28e1b	b6349770-b4e0-435d-b127-6e90c2af457f	NM_001024858.2	-1	reviewed	p.I1332	0.003	192	0%	495	46.5%	0	-	-	-	-	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
RBM25	58517	genome.wustl.edu	37	14	73550246	73550246	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MU-01A-11D-A10B-09	TCGA-BG-A0MU-10A-02D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ccf4fd2-7f79-43a4-9743-320e93b28e1b	b6349770-b4e0-435d-b127-6e90c2af457f	NM_021239.2	+1	validated	p.S123	0.999	436	0%	638	38.9%	13	30.7%	-	-	-	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
YY1	7528	genome.wustl.edu	37	14	100705864	100705865	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-BG-A0MU-01A-11D-A10B-09	TCGA-BG-A0MU-10A-02D-A10B-09	AC	AC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ccf4fd2-7f79-43a4-9743-320e93b28e1b	b6349770-b4e0-435d-b127-6e90c2af457f	NM_003403.3	+1	reviewed	p.T95fs	0.567:0.550	-	-	-	-	-	-	-	-	-	NULL
AKT1	207	genome.wustl.edu	37	14	105239693	105239693	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MU-01A-11D-A10B-09	TCGA-BG-A0MU-10A-02D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ccf4fd2-7f79-43a4-9743-320e93b28e1b	b6349770-b4e0-435d-b127-6e90c2af457f	NM_001014431.1	-1	reviewed	p.K284	1.000	98	0%	391	38.6%	120	43.3%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
C15orf2	23742	genome.wustl.edu	37	15	24921898	24921898	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MU-01A-11D-A10B-09	TCGA-BG-A0MU-10A-02D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ccf4fd2-7f79-43a4-9743-320e93b28e1b	b6349770-b4e0-435d-b127-6e90c2af457f	NM_018958.2	+1	reviewed	p.P295L	0.001	10	0%	49	40.8%	1	0%	benign(0)	-	-	NULL
TLN2	83660	genome.wustl.edu	37	15	63084881	63084881	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MU-01A-11D-A10B-09	TCGA-BG-A0MU-10A-02D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ccf4fd2-7f79-43a4-9743-320e93b28e1b	b6349770-b4e0-435d-b127-6e90c2af457f	NM_015059.2	+1	reviewed	p.H1926	0.970	24	0%	53	50.9%	2	50%	-	-	-	HMMPfam_VBS
COG7	91949	genome.wustl.edu	37	16	23400367	23400367	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MU-01A-11D-A10B-09	TCGA-BG-A0MU-10A-02D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ccf4fd2-7f79-43a4-9743-320e93b28e1b	b6349770-b4e0-435d-b127-6e90c2af457f	NM_153603.3	-1	reviewed	p.P729	0.027	66	0%	223	44.4%	44	38.6%	-	-	-	HMMPfam_COG7
SLC5A2	6524	genome.wustl.edu	37	16	31499713	31499713	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MU-01A-11D-A10B-09	TCGA-BG-A0MU-10A-02D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ccf4fd2-7f79-43a4-9743-320e93b28e1b	b6349770-b4e0-435d-b127-6e90c2af457f	NM_003041.3	+1	reviewed	p.A344V	0.966	16	0%	70	45.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SSF
LOC729264	729264	genome.wustl.edu	37	16	32264832	32264832	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MU-01A-11D-A10B-09	TCGA-BG-A0MU-10A-02D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ccf4fd2-7f79-43a4-9743-320e93b28e1b	b6349770-b4e0-435d-b127-6e90c2af457f	XM_001133674.2	+1	model	p.S53L	0.400	255	0%	738	14%	0	-	-	-	-	NULL
HEATR6	63897	genome.wustl.edu	37	17	58134571	58134571	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MU-01A-11D-A10B-09	TCGA-BG-A0MU-10A-02D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ccf4fd2-7f79-43a4-9743-320e93b28e1b	b6349770-b4e0-435d-b127-6e90c2af457f	NM_022070.4	-1	validated	p.T639	0.061	102	0%	131	50.4%	1	0%	-	-	-	superfamily_ARM-type_fold
SIRT7	51547	genome.wustl.edu	37	17	79872257	79872257	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MU-01A-11D-A10B-09	TCGA-BG-A0MU-10A-02D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ccf4fd2-7f79-43a4-9743-320e93b28e1b	b6349770-b4e0-435d-b127-6e90c2af457f	NM_016538.1	-1	reviewed	p.G243	0.968	20	0%	151	40.4%	32	43.7%	-	-	-	HMMPfam_SIR2,superfamily_DHS-like NAD/FAD-binding domain
TUBB4A	10382	genome.wustl.edu	37	19	6495749	6495749	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0MU-01A-11D-A10B-09	TCGA-BG-A0MU-10A-02D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ccf4fd2-7f79-43a4-9743-320e93b28e1b	b6349770-b4e0-435d-b127-6e90c2af457f	NM_006087.2	-1	provisional	p.A254D	1.000	24	0%	164	40.2%	0	-	probably_damaging(0.995)	-	-	superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C
ILVBL	10994	genome.wustl.edu	37	19	15226213	15226213	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MU-01A-11D-A10B-09	TCGA-BG-A0MU-10A-02D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ccf4fd2-7f79-43a4-9743-320e93b28e1b	b6349770-b4e0-435d-b127-6e90c2af457f	NM_006844.3	-1	reviewed	p.G583	0.999	41	0%	154	34.4%	74	52.7%	-	-	-	HMMPfam_TPP_enzyme_C,superfamily_Thiamin diphosphate-binding fold (THDP-binding)
NOVA2	4858	genome.wustl.edu	37	19	46457171	46457171	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MU-01A-11D-A10B-09	TCGA-BG-A0MU-10A-02D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ccf4fd2-7f79-43a4-9743-320e93b28e1b	b6349770-b4e0-435d-b127-6e90c2af457f	NM_002516.2	-1	validated	p.T88M	1.000	191	0%	643	44.2%	4	0%	unknown(0)	deleterious(0)	-	HMMSmart_KH,HMMPfam_KH_1,superfamily_SSF54791
PRR12	57479	genome.wustl.edu	37	19	50104897	50104897	+	Missense_Mutation	SNP	C	C	T	rs189937355	by1000genomes	TCGA-BG-A0MU-01A-11D-A10B-09	TCGA-BG-A0MU-10A-02D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ccf4fd2-7f79-43a4-9743-320e93b28e1b	b6349770-b4e0-435d-b127-6e90c2af457f	NM_020719.1	+1	validated	p.P1499S	0.010	4	0.000	34	0.500	5	100%	unknown(0)	tolerated(0.24)	-	NULL
GPR32	2854	genome.wustl.edu	37	19	51274442	51274442	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BG-A0MU-01A-11D-A10B-09	TCGA-BG-A0MU-10A-02D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ccf4fd2-7f79-43a4-9743-320e93b28e1b	b6349770-b4e0-435d-b127-6e90c2af457f	NM_001506.1	+1	provisional	p.F195L	0.236	76	0%	237	43%	0	-	possibly_damaging(0.435)	deleterious(0.04)	deleterious(0.491)	HMMPfam_7tm_1,superfamily_SSF81321
C20orf152	140894	genome.wustl.edu	37	20	34572591	34572591	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MU-01A-11D-A10B-09	TCGA-BG-A0MU-10A-02D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ccf4fd2-7f79-43a4-9743-320e93b28e1b	b6349770-b4e0-435d-b127-6e90c2af457f	NM_080834.1	+1	predicted	p.V203I	1.000	174	0%	323	41.5%	0	-	probably_damaging(0.988)	tolerated(0.24)	deleterious(0.475)	HMMPfam_cNMP_binding,HMMSmart_cNMP,superfamily_cNMP_binding
EP300	2033	genome.wustl.edu	37	22	41553288	41553288	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0MU-01A-11D-A10B-09	TCGA-BG-A0MU-10A-02D-A10B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ccf4fd2-7f79-43a4-9743-320e93b28e1b	b6349770-b4e0-435d-b127-6e90c2af457f	NM_001429.3	+1	reviewed	p.N1126S	1.000	244	0%	218	39.9%	4	50%	unknown(0)	deleterious(0.01)	-	HMMPfam_Bromodomain,HMMSmart_BROMO,superfamily_Bromodomain,PatternScan_BROMODOMAIN_1
ENSG00000238643	0	genome.wustl.edu	37	GL000229.1	17347	17347	+	RNA	SNP	G	G	A	novel		TCGA-BG-A0MU-01A-11D-A10B-09	TCGA-BG-A0MU-10A-02D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ccf4fd2-7f79-43a4-9743-320e93b28e1b	b6349770-b4e0-435d-b127-6e90c2af457f	ENST00000459109	+1	novel	NULL	NULL	10	0%	64	21.9%	0	-	-	-	-	-
ENSG00000211459	0	genome.wustl.edu	37	MT	1443	1443	+	RNA	SNP	T	T	C	novel		TCGA-BG-A0MU-01A-11D-A10B-09	TCGA-BG-A0MU-10A-02D-A10B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ccf4fd2-7f79-43a4-9743-320e93b28e1b	b6349770-b4e0-435d-b127-6e90c2af457f	ENST00000389680	+1	known	NULL	NULL	19	0%	34	35.3%	493	27.5%	-	-	-	-
OFD1	8481	genome.wustl.edu	37	X	13774709	13774709	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0MU-01A-11D-A10B-09	TCGA-BG-A0MU-10A-02D-A10B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ccf4fd2-7f79-43a4-9743-320e93b28e1b	b6349770-b4e0-435d-b127-6e90c2af457f	NM_003611.2	+1	reviewed	p.S412P	0.999	161	0%	114	50.9%	8	12.5%	probably_damaging(0.975)	tolerated(0.07)	deleterious(0.736)	NULL
POLA1	5422	genome.wustl.edu	37	X	24766992	24766992	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MU-01A-11D-A10B-09	TCGA-BG-A0MU-10A-02D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ccf4fd2-7f79-43a4-9743-320e93b28e1b	b6349770-b4e0-435d-b127-6e90c2af457f	NM_016937.3	+1	reviewed	p.D943	1.000	284	0%	451	46.3%	1	100%	-	-	-	HMMPfam_DNA_pol_B,HMMSmart_POLBc,superfamily_SSF56672
BCOR	54880	genome.wustl.edu	37	X	39921444	39921444	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0MU-01A-11D-A10B-09	TCGA-BG-A0MU-10A-02D-A10B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ccf4fd2-7f79-43a4-9743-320e93b28e1b	b6349770-b4e0-435d-b127-6e90c2af457f	NM_001123385.1	-1	reviewed	p.N1459S	1.000	88	0%	335	45.4%	11	90.9%	probably_damaging(0.985)	deleterious(0)	deleterious(0.877)	superfamily_Ankyrin repeat
UBQLN2	29978	genome.wustl.edu	37	X	56591469	56591469	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MU-01A-11D-A10B-09	TCGA-BG-A0MU-10A-02D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ccf4fd2-7f79-43a4-9743-320e93b28e1b	b6349770-b4e0-435d-b127-6e90c2af457f	NM_013444.3	+1	reviewed	p.S388L	1.000	48	0%	137	54%	22	0%	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	HMMSmart_SM00727
PJA1	64219	genome.wustl.edu	37	X	68381424	68381424	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MU-01A-11D-A10B-09	TCGA-BG-A0MU-10A-02D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ccf4fd2-7f79-43a4-9743-320e93b28e1b	b6349770-b4e0-435d-b127-6e90c2af457f	NM_145119.3	-1	reviewed	p.A553V	0.175	50	0%	249	37.8%	29	79.3%	probably_damaging(0.979)	deleterious(0.01)	deleterious(0.828)	NULL
DLG3	1741	genome.wustl.edu	37	X	69717042	69717042	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BG-A0MU-01A-11D-A10B-09	TCGA-BG-A0MU-10A-02D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ccf4fd2-7f79-43a4-9743-320e93b28e1b	b6349770-b4e0-435d-b127-6e90c2af457f	NM_020730.2	+1	reviewed	p.S292C	1.000	237	0%	426	41.1%	5	0%	probably_damaging(0.986)	tolerated(0.12)	deleterious(0.695)	superfamily_SH3-domain
POF1B	79983	genome.wustl.edu	37	X	84600884	84600884	+	Silent	SNP	T	T	C	novel		TCGA-BG-A0MU-01A-11D-A10B-09	TCGA-BG-A0MU-10A-02D-A10B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ccf4fd2-7f79-43a4-9743-320e93b28e1b	b6349770-b4e0-435d-b127-6e90c2af457f	NM_024921.3	-1	reviewed	p.S235	0.021	347	0%	229	43.7%	0	-	-	-	-	NULL
TIMM8A	1678	genome.wustl.edu	37	X	100601556	100601556	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BG-A0MU-01A-11D-A10B-09	TCGA-BG-A0MU-10A-02D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ccf4fd2-7f79-43a4-9743-320e93b28e1b	b6349770-b4e0-435d-b127-6e90c2af457f	NM_004085.3	-1	reviewed	p.Q75H	1.000	154	0%	395	12.9%	9	0%	possibly_damaging(0.906)	tolerated(0.27)	neutral(0.393)	HMMPfam_zf-Tim10_DDP
NRK	203447	genome.wustl.edu	37	X	105168952	105168952	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0MU-01A-11D-A10B-09	TCGA-BG-A0MU-10A-02D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5ccf4fd2-7f79-43a4-9743-320e93b28e1b	b6349770-b4e0-435d-b127-6e90c2af457f	NM_198465.2	+1	validated	p.E1081*	0.027	146	0%	137	46%	0	-	-	-	-	NULL
