Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
PUSL1	126789	genome.wustl.edu	37	1	1245114	1245116	+	In_Frame_Del	DEL	ACG	ACG	-	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	ACG	ACG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_153339.1	+1	provisional	p.D177in_frame_del	0.645:0.628:0.734	-	-	-	-	-	-	-	-	-	HMMPfam_PseudoU_synth_1,superfamily_Pseudouridine synthase
PRDM16	63976	genome.wustl.edu	37	1	3334391	3334391	+	Splice_Site	SNP	G	G	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_022114.3	+1	reviewed	e11-1	1.000	69	0%	50	10%	0	-	-	-	-	-
ARHGEF16	27237	genome.wustl.edu	37	1	3386075	3386075	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_014448.3	+1	reviewed	p.K314E	0.002	95	0%	86	26.7%	5	20%	benign(0)	tolerated(1)	-	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
CHD5	26038	genome.wustl.edu	37	1	6219478	6219480	+	In_Frame_Del	DEL	TTC	TTC	-	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	TTC	TTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_015557.1	-1	provisional	p.K102in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
RPL22	6146	ucsc.edu	37	1	6257785	6257785	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_000983.3	-1	reviewed	p.K15fs	1	-	-	-	-	-	-	-	-	-	HMMPfam_Ribosomal_L22e
SLC45A1	50651	genome.wustl.edu	37	1	8385362	8385362	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_001080397.1	+1	provisional	p.F134L	1.000	335	0.3%	297	33.7%	0	-	benign(0.114)	tolerated(0.25)	neutral(0.046)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
TMEM51	55092	genome.wustl.edu	37	1	15545972	15545972	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_001136216.1	+1	validated	p.T165	0.043	90	0%	83	12%	16	18.7%	-	-	-	NULL
RAP1GAP	5909	genome.wustl.edu	37	1	21936748	21936748	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_001145658.1	-1	validated	p.I352	1.000	31	0%	38	18.4%	7	14.2%	-	-	-	HMMPfam_Rap_GAP,superfamily_Rap/Ran-GAP (Pfam 02145)
STIL	6491	genome.wustl.edu	37	1	47761497	47761497	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_001048166.1	-1	reviewed	p.R242H	1.000	244	0%	254	12.6%	0	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	NULL
TTC39A	22996	genome.wustl.edu	37	1	51778523	51778523	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_001144832.1	-1	validated	p.A84V	1.000	161	0%	161	13%	2	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Deme6
ZFYVE9	9372	genome.wustl.edu	37	1	52704103	52704103	+	Silent	SNP	T	T	C	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_004799.2	+1	reviewed	p.P338	0.965	90	0%	83	28.9%	1	100%	-	-	-	NULL
SSX2IP	117178	genome.wustl.edu	37	1	85113146	85113146	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_014021.3	-1	reviewed	p.N605	0.000	300	0%	312	17.3%	10	30%	-	-	-	NULL
EPHX4	253152	genome.wustl.edu	37	1	92518203	92518203	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_173567.4	+1	validated	p.R282Q	1.000	198	0.5%	148	59.5%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Abhydrolase_1,superfamily_SSF53474
LIX1L	128077	genome.wustl.edu	37	1	145497468	145497468	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_153713.1	+1	provisional	p.K225Q	1.000	110	0%	113	35.4%	1	0%	possibly_damaging(0.926)	deleterious(0.01)	deleterious(0.780)	NULL
FCGR1A	2209	genome.wustl.edu	37	1	149761868	149761868	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_000566.3	+1	reviewed	p.S273N	0.995	141	0%	137	22.6%	12	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00409,superfamily_Immunoglobulin
BCAN	63827	genome.wustl.edu	37	1	156622041	156622041	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_021948.3	+1	validated	p.E433D	0.911	70	0%	93	20.4%	0	-	possibly_damaging(0.902)	tolerated(0.11)	deleterious(0.629)	NULL
KIRREL	55243	genome.wustl.edu	37	1	158057861	158057861	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_018240.5	+1	validated	p.Y278C	1.000	114	0%	89	30.3%	0	-	probably_damaging(0.966)	deleterious(0.02)	deleterious(0.791)	HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
LAMC1	3915	genome.wustl.edu	37	1	183090976	183090976	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_002293.3	+1	reviewed	p.M703I	0.133	403	0.2%	330	31.5%	2	0%	benign(0)	deleterious(0.02)	neutral(0.383)	PatternScan_EGF_LAM_1,superfamily_Grow_fac_recept,PatternScan_EGF_2
KDM5B	10765	genome.wustl.edu	37	1	202710776	202710776	+	Silent	SNP	C	C	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_006618.3	-1	validated	p.A888	0.017	123	0%	127	34.6%	4	0%	-	-	-	HMMPfam_PLU-1
NFASC	23114	genome.wustl.edu	37	1	204948153	204948153	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_015090.3	+1	reviewed	p.R641Q	0.980	26	0%	27	25.9%	0	-	benign(0.121)	tolerated(0.37)	neutral(0.028)	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like,superfamily_SSF48726
USH2A	7399	genome.wustl.edu	37	1	216019173	216019173	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_206933.2	-1	reviewed	p.C3016	0.002	203	0%	145	23.4%	0	-	-	-	-	NULL
TRIM67	440730	genome.wustl.edu	37	1	231349681	231349681	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_001004342.3	+1	validated	p.D748	0.451	89	0%	81	39.5%	0	-	-	-	-	HMMPfam_SPRY,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00449
LYST	1130	genome.wustl.edu	37	1	235956908	235956908	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_000081.2	-1	reviewed	p.C1337	1.000	219	0%	188	36.7%	0	-	-	-	-	NULL
OR2B11	127623	genome.wustl.edu	37	1	247614947	247614947	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_001004492.1	-1	provisional	p.C113Y	0.000	72	0%	61	34.4%	0	-	probably_damaging(0.986)	deleterious(0.01)	deleterious(0.840)	HMMPfam_7tm_1,superfamily_SSF81321
OR2T12	127064	genome.wustl.edu	37	1	248458625	248458625	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_001004692.1	-1	provisional	p.G86R	0.007	186	0%	171	26.9%	0	-	possibly_damaging(0.951)	tolerated(0.06)	deleterious(0.717)	HMMPfam_7tm_1,superfamily_SSF81321
APOB	338	genome.wustl.edu	37	2	21228846	21228846	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_000384.2	-1	reviewed	p.R3632G	0.203	171	0%	123	37.4%	0	-	benign(0.059)	-	-	NULL
KLHL29	114818	genome.wustl.edu	37	2	23865262	23865262	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	ENST00000486442	+1	known	p.A161V	1.000	28	0%	26	34.6%	0	-	benign(0.004)	deleterious(0)	neutral(0.445)	NULL
GPR113	165082	genome.wustl.edu	37	2	26532957	26532957	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_001145168.1	-1	validated	p.R1032H	0.008	130	0%	87	16.1%	0	-	benign(0.046)	tolerated(0.17)	neutral(0.061)	NULL
GPR113	165082	genome.wustl.edu	37	2	26537311	26537311	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_001145168.1	-1	validated	p.A368V	0.054	116	0%	117	32.5%	0	-	benign(0.001)	tolerated(0.44)	neutral(0.013)	NULL
THADA	63892	genome.wustl.edu	37	2	43520117	43520117	+	Silent	SNP	T	T	C	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_001083953.1	-1	validated	p.S1558	0.181	81	0%	90	18.9%	9	0%	-	-	-	NULL
KANSL3	55683	genome.wustl.edu	37	2	97275253	97275253	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_001115016.1	-1	validated	p.V456M	1.000	712	0%	543	11.2%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_SSF53474
HS6ST1	9394	genome.wustl.edu	37	2	129025860	129025860	+	Missense_Mutation	SNP	C	C	T	rs147436494	by1000genomes	TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_004807.2	-1	reviewed	p.R371H	1.000	30	3.3%	25	24%	4	0%	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	HMMPfam_HS6ST
TUBA3E	112714	genome.wustl.edu	37	2	130951559	130951559	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_207312.2	-1	validated	p.L286	1.000	228	0%	193	21.8%	0	-	-	-	-	superfamily_Tub_FtsZ_C,HMMPfam_Tubulin_C
LOC100127989	100127989	genome.wustl.edu	37	2	132294420	132294420	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	XM_001724172.1	-1	model	p.I78T	1.000	76	1.3%	72	15.3%	0	-	-	-	-	NULL
BAZ2B	29994	genome.wustl.edu	37	2	160206389	160206389	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_013450.2	-1	validated	p.R1565*	0.996	213	0%	218	17%	0	-	-	-	-	NULL
XIRP2	129446	genome.wustl.edu	37	2	168067298	168067298	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_152381.4	+1	validated	p.R206W	0.000	119	0%	111	38.7%	0	-	benign(0)	deleterious(0.04)	neutral(0.349)	NULL
XIRP2	129446	genome.wustl.edu	37	2	168115175	168115177	+	In_Frame_Del	DEL	AAT	AAT	-	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	AAT	AAT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_001079810.2	+1	validated	p.N710in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
MYO3B	140469	genome.wustl.edu	37	2	171258202	171258202	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	ENST00000317915	+1	known	p.W709*	1.000	53	0%	56	33.9%	0	-	-	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
RAPGEF4	11069	genome.wustl.edu	37	2	173883403	173883403	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_007023.3	+1	validated	p.C676	1.000	294	0%	218	30.7%	0	-	-	-	-	HMMPfam_RA,superfamily_Ras GEF
OSBPL6	114880	genome.wustl.edu	37	2	179226510	179226510	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_145739.1	+1	reviewed	p.Q423*	0.996	157	0%	140	20.7%	0	-	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179643956	179643956	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_133379.3	-1	reviewed	p.K1321N	1.000	146	0.7%	100	36%	0	-	benign(0.29)	-	-	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726
CCDC150	284992	genome.wustl.edu	37	2	197590730	197590730	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_001080539.1	+1	provisional	p.A821	0.942	135	0%	144	35.4%	0	-	-	-	-	NULL
ALS2CR11	151254	genome.wustl.edu	37	2	202430506	202430506	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_152525.5	-1	validated	p.S308C	0.000	217	0%	218	27.1%	0	-	possibly_damaging(0.945)	deleterious(0.05)	deleterious(0.735)	NULL
ACADL	33	genome.wustl.edu	37	2	211085422	211085422	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_001608.3	-1	reviewed	p.R61Q	1.000	365	0.3%	288	18.1%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_Acyl-CoA_dh_N,superfamily_AcylCoA_dehyd_NM
FN1	2335	genome.wustl.edu	37	2	216288935	216288935	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_212482.1	-1	reviewed	p.L384I	1.000	114	0%	96	31.2%	1	0%	benign(0.076)	deleterious(0)	neutral(0.450)	HMMPfam_fn2,HMMSmart_SM00059,PatternScan_FN2_1,superfamily_Kringle-like
UGT1A1	54658	genome.wustl.edu	37	2	234669256	234669256	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_000463.2	+1	reviewed	p.R108H	0.000	156	0%	132	29.5%	0	-	possibly_damaging(0.939)	tolerated(0.12)	deleterious(0.645)	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
ITPR1	3708	genome.wustl.edu	37	3	4824380	4824380	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_001099952.2	+1	reviewed	p.A2107	0.783	179	0%	164	32.9%	0	-	-	-	-	NULL
C3orf32	51066	genome.wustl.edu	37	3	8672579	8672579	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_015931.1	-1	predicted	p.P124H	0.994	162	0%	112	18.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CPNE9	151835	genome.wustl.edu	37	3	9760283	9760283	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_153635.2	+1	validated	p.A413V	1.000	179	0%	170	17.6%	0	-	probably_damaging(0.973)	deleterious(0)	deleterious(0.859)	HMMSmart_VWA,HMMPfam_Copine,superfamily_SSF53300
CAND2	23066	genome.wustl.edu	37	3	12861680	12861680	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_012298.2	+1	validated	p.A921T	0.998	365	0.3%	296	30.4%	0	-	possibly_damaging(0.688)	deleterious(0.01)	deleterious(0.651)	superfamily_ARM-type_fold
IQSEC1	9922	genome.wustl.edu	37	3	12942646	12942646	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	ENST00000435445	-1	known	p.G1061S	0.002	12	0%	12	41.7%	0	-	unknown(0)	-	-	NULL
LIMD1	8994	genome.wustl.edu	37	3	45636431	45636431	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_014240.2	+1	validated	p.M20I	1.000	79	0%	95	29.5%	2	100%	benign(0.029)	deleterious(0)	neutral(0.446)	NULL
LTF	4057	genome.wustl.edu	37	3	46497857	46497857	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_002343.2	-1	reviewed	p.G80D	0.155	114	0%	119	13.4%	13	0%	possibly_damaging(0.532)	deleterious(0)	deleterious(0.625)	HMMPfam_Transferrin,HMMSmart_TR_FER,superfamily_SSF53850
DHX30	22907	genome.wustl.edu	37	3	47887785	47887785	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_138615.2	+1	reviewed	p.A408V	0.017	37	0%	42	33.3%	6	33.3%	benign(0.03)	tolerated(0.08)	neutral(0.301)	NULL
CELSR3	1951	genome.wustl.edu	37	3	48697842	48697842	+	Silent	SNP	G	G	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_001407.2	-1	reviewed	p.V742	0.995	43	0%	36	36.1%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
FHIT	2272	genome.wustl.edu	37	3	59737980	59737980	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_002012.2	-1	reviewed	p.A139V	0.948	68	0%	47	21.3%	15	13.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_HIT-like
GOLGB1	2804	genome.wustl.edu	37	3	121413318	121413318	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_004487.3	-1	validated	p.L2013	0.998	409	0%	281	17.4%	8	0%	-	-	-	superfamily_Prefoldin
GATA2	2624	genome.wustl.edu	37	3	128199957	128199957	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_001145661.1	-1	reviewed	p.G450R	0.998	119	0%	125	15.2%	15	13.3%	probably_damaging(0.997)	deleterious(0.02)	deleterious(0.849)	NULL
ANKUB1	389161	genome.wustl.edu	37	3	149485656	149485656	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_001144960.1	-1	predicted	p.L265	0.980	129	0%	140	16.4%	2	0%	-	-	-	HMMSmart_SM00248,superfamily_Ankyrin repeat
IGSF10	285313	genome.wustl.edu	37	3	151164292	151164292	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_178822.4	-1	validated	p.N1159	0.000	305	0%	302	33.1%	0	-	-	-	-	NULL
MFSD1	64747	genome.wustl.edu	37	3	158519835	158519835	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	ENST00000415822	+1	known	p.S14N	0.034	27	0%	16	37.5%	0	-	benign(0)	-	-	NULL
WDR49	151790	genome.wustl.edu	37	3	167293741	167293741	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_178824.3	-1	provisional	p.V151I	0.987	181	0%	180	18.9%	3	33.3%	benign(0.287)	tolerated(0.48)	neutral(0.099)	HMMSmart_SM00320,superfamily_WD40 repeat-like
LRRIQ4	344657	genome.wustl.edu	37	3	169540030	169540032	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_001080460.1	+1	provisional	p.S110in_frame_del	0.000:0.000:0.000	-	-	-	-	-	-	-	-	-	superfamily_SSF52058
ACTL6A	86	genome.wustl.edu	37	3	179304362	179304362	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_004301.3	+1	reviewed	p.N384I	1.000	248	0%	253	37.2%	38	31.5%	benign(0.215)	deleterious(0.01)	neutral(0.427)	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
TRA2B	6434	genome.wustl.edu	37	3	185639878	185639878	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_004593.2	-1	validated	p.R187C	1.000	400	0.3%	430	27%	29	20.6%	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
DGKG	1608	genome.wustl.edu	37	3	185867951	185867951	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_001346.2	-1	reviewed	p.A768	0.954	177	0%	184	34.2%	0	-	-	-	-	NULL
BCL6	604	genome.wustl.edu	37	3	187442758	187442758	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_001130845.1	-1	reviewed	p.R650*	1.000	186	0%	125	16%	8	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
MFSD10	10227	genome.wustl.edu	37	4	2934096	2934096	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	ENST00000503596	-1	known	p.R191H	0.969	55	0%	35	31.4%	71	49.2%	unknown(0)	-	-	NULL
BST1	683	genome.wustl.edu	37	4	15704840	15704840	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_004334.2	+1	validated	p.L25	0.002	6	0.000	6	0.833	0	-	-	-	-	NULL
LCORL	254251	genome.wustl.edu	37	4	17886221	17886223	+	In_Frame_Del	DEL	GAA	GAA	-	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	GAA	GAA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	ENST00000382226	-1	known	p.L310in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
PACRGL	133015	genome.wustl.edu	37	4	20715115	20715115	+	Missense_Mutation	SNP	G	G	A	rs183601092	by1000genomes	TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_145048.3	+1	validated	p.V188I	0.011	433	0%	419	17.2%	6	0%	benign(0.001)	tolerated(0.37)	neutral(0.019)	HMMPfam_ParcG
TBC1D1	23216	genome.wustl.edu	37	4	38029475	38029475	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_015173.2	+1	validated	p.Q426R	1.000	186	0%	168	10.1%	3	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
GABRB1	2560	genome.wustl.edu	37	4	47405721	47405721	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_000812.3	+1	reviewed	p.V276	0.139	283	0%	245	34.3%	0	-	-	-	-	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
ADAMTS3	9508	genome.wustl.edu	37	4	73149115	73149115	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_014243.1	-1	reviewed	p.R1119K	0.124	202	0%	196	11.7%	0	-	benign(0.059)	deleterious(0)	neutral(0.449)	NULL
NAP1L5	266812	genome.wustl.edu	37	4	89618520	89618520	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_153757.2	-1	validated	p.G129V	0.950	223	0.4%	189	16.4%	1	0%	probably_damaging(0.979)	tolerated(0.08)	deleterious(0.722)	HMMPfam_NAP
ENPEP	2028	genome.wustl.edu	37	4	111397775	111397775	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_001977.3	+1	validated	p.G69C	0.005	132	0%	144	17.4%	1	0%	benign(0.159)	deleterious(0.04)	neutral(0.363)	NULL
FAT4	79633	genome.wustl.edu	37	4	126240668	126240668	+	Silent	SNP	C	C	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_024582.4	+1	validated	p.T1034	0.995	147	0%	94	37.2%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
FAM160A1	729830	genome.wustl.edu	37	4	152507836	152507836	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_001109977.1	+1	predicted	p.T259I	0.997	178	0%	154	14.9%	0	-	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	HMMPfam_RAI16-like
RNF175	285533	genome.wustl.edu	37	4	154631573	154631573	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_173662.2	-1	validated	p.P312H	1.000	205	0.5%	235	16.2%	6	33.3%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
SFRP2	6423	genome.wustl.edu	37	4	154709612	154709612	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_003013.2	-1	reviewed	p.A126T	1.000	99	0%	84	40.5%	0	-	benign(0.094)	tolerated(0.52)	neutral(0.015)	superfamily_Frizzled cysteine-rich domain,HMMPfam_Fz,HMMSmart_SM00063
RXFP1	59350	genome.wustl.edu	37	4	159573021	159573021	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_021634.2	+1	provisional	p.W696C	0.999	209	0%	166	38.6%	7	71.4%	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	superfamily_Family A G protein-coupled receptor-like
LPCAT1	79888	genome.wustl.edu	37	5	1463948	1463948	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_024830.3	-1	validated	p.D475N	0.991	136	0%	140	42.1%	0	-	possibly_damaging(0.707)	tolerated(0.27)	neutral(0.288)	HMMSmart_EFh,superfamily_SSF47473
DHX29	54505	genome.wustl.edu	37	5	54557246	54557248	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_019030.2	-1	validated	p.E1303in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
IPO11	51194	genome.wustl.edu	37	5	61826566	61826566	+	Silent	SNP	T	T	C	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_001134779.1	+1	validated	p.I721	0.995	463	0%	413	14.3%	0	-	-	-	-	superfamily_ARM repeat
RASA1	5921	genome.wustl.edu	37	5	86627310	86627310	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_002890.1	+1	reviewed	p.H229Y	1.000	407	0%	337	31.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain
APC	324	genome.wustl.edu	37	5	112163652	112163652	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_000038.4	+1	reviewed	p.C525	1.000	302	0%	302	14.2%	1	0%	-	-	-	HMMPfam_Arm,HMMSmart_SM00185,superfamily_ARM repeat
APC	324	genome.wustl.edu	37	5	112179627	112179627	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_000038.4	+1	reviewed	p.A2779V	1.000	129	0%	110	15.5%	7	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_EB1_binding
GDF9	2661	genome.wustl.edu	37	5	132200035	132200035	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_005260.3	-1	reviewed	p.A64V	0.951	166	0%	161	32.3%	1	100%	benign(0.011)	tolerated(0.06)	neutral(0.323)	NULL
SLC23A1	9963	genome.wustl.edu	37	5	138713985	138713985	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_152685.3	-1	reviewed	p.T416S	0.446	65	0%	56	30.4%	5	20%	benign(0.032)	deleterious(0.04)	neutral(0.350)	HMMPfam_Xan_ur_permease
PCDHGB1	56104	genome.wustl.edu	37	5	140731618	140731618	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_018922.2	+1	reviewed	p.N597	0.975	28	0%	24	29.2%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
CAMK2A	815	genome.wustl.edu	37	5	149610868	149610868	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_015981.3	-1	reviewed	p.T381M	1.000	151	0%	132	22%	0	-	probably_damaging(0.983)	deleterious(0)	deleterious(0.873)	superfamily_Protein kinase-like (PK-like),HMMPfam_CaMKII_AD
CCNJL	79616	genome.wustl.edu	37	5	159707673	159707673	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_024565.5	-1	validated	p.T47A	1.000	49	0%	69	15.9%	0	-	benign(0.019)	tolerated(1)	neutral(0.001)	HMMSmart_SM00385,HMMPfam_Cyclin_N,superfamily_Cyclin-like
ATP10B	23120	genome.wustl.edu	37	5	159996612	159996612	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_025153.2	-1	validated	p.V1277I	0.327	157	0%	154	37.7%	0	-	possibly_damaging(0.592)	tolerated(0.1)	deleterious(0.491)	NULL
HMMR	3161	genome.wustl.edu	37	5	162902651	162902651	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_001142556.1	+1	reviewed	p.L414S	0.071	278	0.4%	209	32.1%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
RANBP17	64901	genome.wustl.edu	37	5	170319411	170319411	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_022897.2	+1	provisional	p.V93M	1.000	263	0.4%	231	31.2%	0	-	possibly_damaging(0.455)	deleterious(0)	deleterious(0.594)	HMMPfam_IBN_N,superfamily_ARM repeat
GNB2L1	10399	genome.wustl.edu	37	5	180665102	180665102	+	Silent	SNP	G	G	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	ENST00000507756	-1	known	p.S189Y	1.000	127	0%	152	35.5%	4272	44.6%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
GPLD1	2822	genome.wustl.edu	37	6	24437437	24437437	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_001503.2	-1	reviewed	p.A701T	0.000	101	0%	124	37.1%	0	-	benign(0)	tolerated(1)	-	superfamily_Integrin alpha N-terminal domain
DNAH8	1769	genome.wustl.edu	37	6	38877486	38877486	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_001371.2	+1	validated	p.M3019V	0.199	167	0%	185	38.9%	0	-	benign(0)	tolerated(0.51)	neutral(0.009)	superfamily_P-loop containing nucleoside triphosphate hydrolases
TDRD6	221400	genome.wustl.edu	37	6	46657424	46657425	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	TG	TG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_001010870.2	+1	validated	p.C521fs	0.987:0.950	-	-	-	-	-	-	-	-	-	HMMPfam_TUDOR
DPPA5	340168	genome.wustl.edu	37	6	74063670	74063670	+	Silent	SNP	G	G	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_001025290.1	-1	provisional	p.T66	0.384	39	0%	44	34.1%	0	-	-	-	-	superfamily_SSF54791
FILIP1	27145	genome.wustl.edu	37	6	76022259	76022259	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_015687.2	-1	validated	p.V1097M	0.011	130	0.8%	146	21.2%	2	0%	benign(0.296)	tolerated(0.09)	neutral(0.388)	NULL
NCOA7	135112	genome.wustl.edu	37	6	126203642	126203642	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_181782.3	+1	validated	p.E215G	1.000	138	0%	147	37.4%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
MED23	9439	genome.wustl.edu	37	6	131948559	131948559	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_004830.2	-1	reviewed	p.Q46*	1.000	215	0%	199	29.6%	1	0%	-	-	-	NULL
ADGB	79747	genome.wustl.edu	37	6	147055153	147055153	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_024694.3	+1	provisional	p.K927	0.982	253	0%	270	17.8%	0	-	-	-	-	HMMPfam_IQ
TIAM2	26230	genome.wustl.edu	37	6	155451422	155451422	+	Silent	SNP	C	C	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_012454.3	+1	reviewed	p.S355	0.999	116	0.9%	94	29.8%	0	-	-	-	-	NULL
DLL1	28514	genome.wustl.edu	37	6	170592538	170592538	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_005618.3	-1	reviewed	p.T610M	0.994	336	0%	278	10.4%	4	0%	probably_damaging(0.999)	tolerated(0.05)	deleterious(0.836)	NULL
SDK1	221935	genome.wustl.edu	37	7	4014109	4014109	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_152744.3	+1	validated	p.I642	0.998	176	0%	169	14.2%	1	0%	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
TBX20	57057	genome.wustl.edu	37	7	35288447	35288447	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_001077653.2	-1	reviewed	p.M129I	1.000	74	0%	66	30.3%	0	-	possibly_damaging(0.642)	deleterious(0)	deleterious(0.669)	HMMPfam_T-box,HMMSmart_TBOX,superfamily_P53_like_DNA_bnd
PKD1L1	168507	genome.wustl.edu	37	7	47933563	47933563	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_138295.2	-1	reviewed	p.H789Y	0.987	58	0%	77	18.2%	0	-	possibly_damaging(0.915)	tolerated(0.35)	neutral(0.387)	HMMPfam_REJ
ELN	2006	genome.wustl.edu	37	7	73458249	73458249	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_000501.2	+1	reviewed	p.P156	0.997	150	0.7%	175	21.7%	1	0%	-	-	-	NULL
LAT2	7462	genome.wustl.edu	37	7	73639055	73639055	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_014146.3	+1	reviewed	p.A239P	0.012	26	0%	39	12.8%	3	0%	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	NULL
LMTK2	22853	genome.wustl.edu	37	7	97816231	97816231	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_014916.3	+1	reviewed	p.R307G	0.999	249	0%	189	30.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
TRRAP	8295	genome.wustl.edu	37	7	98575901	98575901	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_003496.2	+1	validated	p.P2793L	1.000	209	0%	201	34.8%	2	50%	benign(0.001)	tolerated(0.62)	neutral(0.004)	superfamily_ARM repeat,superfamily_Protein prenylyltransferase
LAMB1	3912	genome.wustl.edu	37	7	107605115	107605115	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_002291.2	-1	reviewed	p.G527D	1.000	168	0%	158	20.9%	6	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin
CADPS2	93664	genome.wustl.edu	37	7	122120908	122120908	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_017954.10	-1	reviewed	p.K620R	1.000	240	0%	197	28.9%	0	-	benign(0)	tolerated(0.83)	neutral(0.001)	NULL
HIPK2	28996	genome.wustl.edu	37	7	139299155	139299155	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	ENST00000263551	-1	known	p.S623A	1.000	230	0.4%	194	13.9%	4	0%	benign(0.001)	tolerated(0.39)	neutral(0.016)	NULL
EPHA1	2041	genome.wustl.edu	37	7	143088764	143088764	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_005232.4	-1	reviewed	p.F934Y	1.000	51	0%	37	24.3%	37	43.2%	probably_damaging(0.955)	deleterious(0.01)	deleterious(0.804)	HMMPfam_SAM_1,HMMSmart_SM00454,superfamily_SAM/Pointed domain
SLC4A2	6522	genome.wustl.edu	37	7	150765087	150765087	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_003040.3	+1	validated	p.V365M	1.000	70	0%	39	46.2%	5	40%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_Band_3_cyto,superfamily_Phoshotransferase/anion transport protein
UBE3C	9690	genome.wustl.edu	37	7	157060444	157060444	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_014671.2	+1	validated	p.S1083G	1.000	170	0%	140	32.9%	8	37.5%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_HECT,HMMSmart_SM00119
NCAPG2	54892	genome.wustl.edu	37	7	158476040	158476040	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	ENST00000441982	-1	known	p.T94M	0.200	163	0%	161	33.5%	1	100%	-	-	-	NULL
DLGAP2	9228	genome.wustl.edu	37	8	1645418	1645418	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_004745.3	+1	reviewed	p.R888W	1.000	23	0%	24	29.2%	0	-	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	HMMPfam_GKAP
KIAA1456	57604	genome.wustl.edu	37	8	12878653	12878653	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_020844.2	+1	validated	p.D155E	0.972	122	0%	114	12.3%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
DLC1	10395	genome.wustl.edu	37	8	12957996	12957996	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_182643.2	-1	reviewed	p.R617Q	0.997	35	0%	30	33.3%	0	-	benign(0.117)	tolerated(0.48)	neutral(0.020)	NULL
CDCA2	157313	genome.wustl.edu	37	8	25364162	25364162	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_152562.2	+1	validated	p.C660	0.001	59	0%	51	27.5%	3	0%	-	-	-	NULL
ADRA1A	148	genome.wustl.edu	37	8	26722358	26722358	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_033303.3	-1	reviewed	p.G43	0.963	158	0%	146	31.5%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
MTFR1	9650	genome.wustl.edu	37	8	66619444	66619444	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_014637.3	+1	reviewed	p.L239	0.983	124	0%	124	18.5%	3	33.3%	-	-	-	HMMPfam_DUF729
KCNB2	9312	genome.wustl.edu	37	8	73480055	73480055	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_004770.2	+1	reviewed	p.R29Q	0.998	84	0%	84	34.5%	0	-	benign(0.396)	tolerated(0.06)	neutral(0.450)	NULL
ZFHX4	79776	genome.wustl.edu	37	8	77767476	77767476	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_024721.4	+1	validated	p.F2728L	0.264	95	0%	73	32.9%	0	-	benign(0.019)	-	-	NULL
RALYL	138046	genome.wustl.edu	37	8	85441646	85441646	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_001100391.1	+1	validated	p.T43	0.970	146	0%	183	30.6%	0	-	-	-	-	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
SLC7A13	157724	genome.wustl.edu	37	8	87226684	87226684	+	Silent	SNP	T	T	C	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_138817.2	-1	validated	p.Q457	0.201	281	0%	237	16%	0	-	-	-	-	NULL
PLEKHF2	79666	genome.wustl.edu	37	8	96166622	96166622	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_024613.3	+1	validated	p.T117M	1.000	154	0%	118	34.7%	2	50%	possibly_damaging(0.857)	tolerated(0.06)	deleterious(0.653)	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
SAMD12	401474	genome.wustl.edu	37	8	119452147	119452147	+	Silent	SNP	G	G	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_207506.2	-1	validated	p.V82	1.000	222	0%	205	18.5%	0	-	-	-	-	HMMSmart_SAM,superfamily_SAM_homology,HMMPfam_SAM_2
KCNQ3	3786	genome.wustl.edu	37	8	133186491	133186491	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_004519.2	-1	reviewed	p.P347S	1.000	108	0%	99	37.4%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Ion_trans,superfamily_SSF81324
COL22A1	169044	genome.wustl.edu	37	8	139618624	139618624	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	ENST00000341807	-1	known	p.G597R	1.000	111	0%	103	13.6%	1	0%	-	-	-	HMMPfam_Collagen
KIAA1797	54914	genome.wustl.edu	37	9	20946762	20946762	+	Silent	SNP	T	T	C	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_017794.3	+1	validated	p.A1206	0.003	440	0%	423	15.1%	1	0%	-	-	-	superfamily_ARM-type_fold
TEK	7010	genome.wustl.edu	37	9	27212761	27212761	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_000459.3	+1	reviewed	p.R915C	1.000	68	0%	56	17.9%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
TAF1L	138474	genome.wustl.edu	37	9	32634873	32634873	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_153809.2	-1	provisional	p.M235I	1.000	299	0.3%	217	16.1%	0	-	possibly_damaging(0.916)	deleterious(0.04)	deleterious(0.716)	NULL
KIAA1161	57462	genome.wustl.edu	37	9	34372729	34372729	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	ENST00000297625	-1	known	p.A37	0.006	93	0%	102	13.7%	0	-	-	-	-	NULL
CNTNAP3	79937	genome.wustl.edu	37	9	39088452	39088452	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_033655.3	-1	reviewed	p.E1063G	0.993	244	0.4%	212	25.9%	0	-	benign(0.422)	tolerated(0.07)	neutral(0.456)	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
TJP2	9414	genome.wustl.edu	37	9	71844136	71844136	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_004817.3	+1	reviewed	p.R497H	0.994	606	0%	527	16.7%	3	66.6%	possibly_damaging(0.87)	tolerated(0.13)	deleterious(0.591)	superfamily_PDZ domain-like
TMC1	117531	genome.wustl.edu	37	9	75441850	75441850	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_138691.2	+1	reviewed	p.A690V	0.743	504	0%	315	33%	4	50%	benign(0.039)	tolerated(0.36)	neutral(0.022)	NULL
NTRK2	4915	genome.wustl.edu	37	9	87636328	87636328	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_006180.3	+1	reviewed	p.P831	0.000	164	0%	101	21.8%	0	-	-	-	-	superfamily_Kinase_like
OMD	4958	genome.wustl.edu	37	9	95177651	95177651	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_005014.2	-1	validated	p.I350T	1.000	563	0%	519	34.1%	0	-	benign(0.043)	tolerated(0.17)	neutral(0.061)	superfamily_L domain-like
NCBP1	4686	genome.wustl.edu	37	9	100405586	100405587	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_002486.4	+1	reviewed	p.R110fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_MIF4G,HMMSmart_MIF4G,superfamily_ARM-type_fold
COL15A1	1306	genome.wustl.edu	37	9	101804353	101804353	+	Silent	SNP	T	T	G	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_001855.3	+1	reviewed	p.T846	0.988	185	0%	169	16%	7	0%	-	-	-	HMMPfam_Collagen
GRIN3A	116443	genome.wustl.edu	37	9	104449173	104449173	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_133445.2	-1	reviewed	p.R337W	0.998	199	0%	190	18.9%	0	-	possibly_damaging(0.952)	tolerated(0.19)	neutral(0.445)	superfamily_SSF53822
ABCA1	19	genome.wustl.edu	37	9	107547723	107547723	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_005502.2	-1	reviewed	p.R2200Q	1.000	326	0%	306	18.3%	0	-	benign(0.149)	tolerated(0.57)	neutral(0.019)	NULL
IKBKAP	8518	genome.wustl.edu	37	9	111659470	111659470	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_003640.3	-1	reviewed	p.C820Y	1.000	245	0%	257	16.3%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_IKI3
DFNB31	25861	genome.wustl.edu	37	9	117186676	117186676	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_015404.3	-1	reviewed	p.G452S	0.901	56	0%	59	37.3%	3	33.3%	benign(0.037)	deleterious(0)	neutral(0.447)	NULL
PSMD5	5711	genome.wustl.edu	37	9	123586788	123586788	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_005047.2	-1	reviewed	p.Q330H	1.000	141	0%	121	31.4%	7	42.8%	probably_damaging(0.991)	tolerated(0.53)	neutral(0.452)	superfamily_ARM-type_fold,HMMPfam_Proteasom_PSMB
SET	6418	genome.wustl.edu	37	9	131446266	131446266	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_001122821.1	+1	validated	p.A31V	0.000	104	0%	119	18.5%	8	12.5%	benign(0)	tolerated(0.29)	neutral(0.029)	NULL
CRAT	1384	genome.wustl.edu	37	9	131864771	131864773	+	In_Frame_Del	DEL	AGG	AGG	-	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	AGG	AGG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_000755.3	-1	reviewed	p.S179in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Carn_acyltransf,superfamily_CoA-dependent acyltransferases
GPR158	57512	genome.wustl.edu	37	10	25883268	25883268	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_020752.2	+1	validated	p.Y647C	1.000	508	0%	445	14.8%	0	-	benign(0.002)	deleterious(0.03)	neutral(0.364)	HMMPfam_7tm_3
WDFY4	57705	genome.wustl.edu	37	10	50025297	50025297	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_020945.1	+1	validated	p.A1783V	0.967	44	0%	34	35.3%	0	-	benign(0.002)	tolerated(0.35)	neutral(0.021)	NULL
ANXA7	310	genome.wustl.edu	37	10	75158114	75158114	+	Silent	SNP	A	A	C	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_004034.2	-1	reviewed	p.P28	0.298	57	0%	65	32.3%	10	10%	-	-	-	NULL
SH2D4B	387694	genome.wustl.edu	37	10	82331325	82331325	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_207372.2	+1	validated	p.E162D	0.994	65	0%	63	39.7%	0	-	probably_damaging(0.973)	tolerated(0.25)	neutral(0.452)	NULL
PTEN	5728	genome.wustl.edu	37	10	89692792	89692792	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	ENST00000371953	+1	known	p.D92E	1.000	399	0%	324	29.6%	11	18.1%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
PTEN	5728	genome.wustl.edu	37	10	89720805	89720808	+	Frame_Shift_Del	DEL	CTTT	CTTT	-	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	CTTT	CTTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	ENST00000371953	+1	known	p.T319fs	1.000:0.999:1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2
LIPA	3988	genome.wustl.edu	37	10	91007396	91007396	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_000235.2	-1	reviewed	p.R4W	0.009	289	0%	267	17.2%	1	0%	benign(0.001)	tolerated(0.05)	neutral(0.345)	NULL
DOCK1	1793	genome.wustl.edu	37	10	129179611	129179611	+	Silent	SNP	T	T	G	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	ENST00000398025	+1	known	p.L1307	0.981	279	0%	245	35.9%	7	0%	-	-	-	NULL
TTC40	54777	genome.wustl.edu	37	10	134743283	134743283	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_173572.3	-1	validated	p.R298C	0.080	89	0%	68	30.9%	2	50%	probably_damaging(0.997)	deleterious(0.04)	deleterious(0.815)	NULL
SCUBE2	57758	genome.wustl.edu	37	11	9100947	9100947	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_020974.2	-1	validated	p.D122	0.982	233	0%	171	11.1%	0	-	-	-	-	HMMSmart_SM00179,HMMSmart_SM00181,PatternScan_EGF_2,superfamily_EGF/Laminin
USH1C	10083	genome.wustl.edu	37	11	17531968	17531968	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_153676.3	-1	reviewed	p.D505G	1.000	125	0%	119	16.8%	0	-	benign(0.011)	deleterious(0)	neutral(0.445)	NULL
MRGPRX4	117196	genome.wustl.edu	37	11	18195757	18195757	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_054032.3	+1	validated	p.S318	0.001	134	0%	127	14.2%	0	-	-	-	-	NULL
WT1	7490	genome.wustl.edu	37	11	32410656	32410656	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_024426.3	-1	reviewed	p.R501H	1.000	442	0%	446	14.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF408	79797	genome.wustl.edu	37	11	46726563	46726563	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_024741.2	+1	validated	p.A438V	0.003	28	0.000	8	0.500	3	0%	benign(0)	tolerated(0.89)	-	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667
F2	2147	genome.wustl.edu	37	11	46745000	46745000	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_000506.3	+1	reviewed	p.T164S	0.009	51	0%	47	36.2%	0	-	benign(0)	tolerated(0.63)	neutral(0.004)	HMMPfam_Kringle,HMMSmart_KR,superfamily_Kringle-like,PatternScan_KRINGLE_1
MYBPC3	4607	genome.wustl.edu	37	11	47372955	47372955	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_000256.3	-1	reviewed	p.Q43*	1.000	37	2.7%	36	27.8%	0	-	-	-	-	HMMSmart_IG,HMMPfam_I-set,superfamily_SSF48726
OR4B1	119765	genome.wustl.edu	37	11	48238504	48238504	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_001005470.1	+1	provisional	p.S48N	0.000	346	0%	340	39.4%	0	-	benign(0)	tolerated(0.3)	neutral(0.029)	HMMPfam_7tm_1,superfamily_SSF81321
OR10AG1	282770	genome.wustl.edu	37	11	55735602	55735602	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_001005491.1	-1	provisional	p.R113H	0.997	201	0.5%	138	35.5%	0	-	benign(0.422)	deleterious(0)	deleterious(0.582)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like
OR5F1	338674	genome.wustl.edu	37	11	55761441	55761441	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_003697.1	-1	provisional	p.V221I	0.002	101	0%	51	11.8%	0	-	benign(0.001)	tolerated(1)	-	HMMPfam_7tm_1,superfamily_SSF81321
PLAC1L	219990	genome.wustl.edu	37	11	59811021	59811021	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_173801.3	+1	provisional	p.A48	0.081	413	0%	333	32.7%	0	-	-	-	-	NULL
MS4A4A	51338	genome.wustl.edu	37	11	60070112	60070112	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_148975.1	+1	reviewed	p.A156	0.000	434	0.2%	372	31.2%	3	0%	-	-	-	HMMPfam_CD20
CYBASC3	220002	genome.wustl.edu	37	11	61124702	61124702	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	ENST00000426130	-1	known	p.K3N	0.002	186	0%	162	14.8%	0	-	unknown(0)	-	-	NULL
DAGLA	747	genome.wustl.edu	37	11	61490401	61490401	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_006133.1	+1	validated	p.C126	1.000	181	0%	126	11.9%	0	-	-	-	-	NULL
INCENP	3619	genome.wustl.edu	37	11	61912539	61912539	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_001040694.1	+1	validated	p.R564Q	1.000	123	0%	122	27%	5	60%	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	NULL
NRXN2	9379	genome.wustl.edu	37	11	64434867	64434867	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_015080.2	-1	reviewed	p.A551	0.983	33	0%	34	26.5%	0	-	-	-	-	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
SIPA1	6494	genome.wustl.edu	37	11	65418141	65418141	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_006747.3	+1	reviewed	p.L1028	0.982	18	0%	25	52%	135	38.5%	-	-	-	NULL
SYT12	91683	genome.wustl.edu	37	11	66807405	66807405	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_177963.3	+1	reviewed	p.R118W	1.000	60	0%	58	48.3%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CLCF1	23529	genome.wustl.edu	37	11	67132979	67132979	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_013246.2	-1	reviewed	p.R102	0.988	105	0%	84	31%	13	53.8%	-	-	-	superfamily_4_helix_cytokine,HMMPfam_PRF
CPT1A	1374	genome.wustl.edu	37	11	68564359	68564359	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_001876.3	-1	reviewed	p.G246W	0.938	79	0%	71	31%	2	0%	probably_damaging(0.972)	deleterious(0)	deleterious(0.859)	HMMPfam_Carn_acyltransf,superfamily_CoA-dependent acyltransferases
CCND1	595	genome.wustl.edu	37	11	69457918	69457918	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_053056.2	+1	reviewed	p.C106	1.000	44	0%	36	25%	20	35%	-	-	-	HMMSmart_SM00385,HMMPfam_Cyclin_N,superfamily_Cyclin-like
SLCO2B1	11309	genome.wustl.edu	37	11	74915591	74915591	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_007256.3	+1	validated	p.G699V	0.000	91	0%	94	13.8%	1	0%	benign(0.155)	tolerated(0.06)	neutral(0.336)	NULL
MYO7A	4647	genome.wustl.edu	37	11	76886420	76886420	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_000260.3	+1	reviewed	p.G699	0.003	61	0%	44	15.9%	1	0%	-	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
C11orf67	28971	genome.wustl.edu	37	11	77583269	77583269	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_024684.2	+1	predicted	p.R93W	0.209	242	0%	266	15.8%	58	5.1%	probably_damaging(0.997)	tolerated(0.18)	deleterious(0.522)	HMMPfam_DUF498,superfamily_Hypothetical protein MT938 (MTH938)
ENSG00000234376	0	genome.wustl.edu	37	11	89486663	89486663	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	ENST00000411859	-1	known	p.Q158*	0.084	291	0%	237	26.6%	0	-	-	-	-	HMMPfam_HMG_box,HMMSmart_SM00398,superfamily_HMG-box
FAT3	120114	genome.wustl.edu	37	11	92087472	92087472	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_001008781.2	+1	validated	p.D732N	0.999	130	0.8%	144	34.7%	0	-	benign(0.081)	tolerated(0.19)	neutral(0.056)	HMMPfam_Cadherin,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
KIAA1731	85459	genome.wustl.edu	37	11	93430160	93430160	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_033395.1	+1	validated	p.R694	0.000	153	0%	138	37%	0	-	-	-	-	NULL
KIAA1731	85459	genome.wustl.edu	37	11	93432146	93432146	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_033395.1	+1	validated	p.E1356	0.569	76	0%	51	31.4%	0	-	-	-	-	NULL
KIAA1377	57562	genome.wustl.edu	37	11	101833644	101833645	+	Frame_Shift_Del	DEL	CA	CA	-	rs7109233	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_020802.2	+1	validated	p.I627fs	0.001:0.094	-	-	-	-	-	-	-	-	-	NULL
DYNC2H1	79659	genome.wustl.edu	37	11	102991255	102991255	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_001080463.1	+1	reviewed	p.R360Q	1.000	247	0%	179	19.6%	0	-	benign(0.001)	tolerated(0.72)	neutral(0.002)	HMMPfam_DHC_N1
TMPRSS5	80975	genome.wustl.edu	37	11	113567609	113567609	+	Silent	SNP	T	T	C	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_030770.2	-1	reviewed	p.G183	0.000	250	0%	231	22.1%	0	-	-	-	-	superfamily_SRCR-like
CD3E	916	genome.wustl.edu	37	11	118184455	118184455	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_000733.3	+1	reviewed	p.S129L	0.000	120	0%	100	37%	8	0%	benign(0.023)	tolerated(0.36)	neutral(0.021)	NULL
CD3D	915	genome.wustl.edu	37	11	118210185	118210185	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_000732.4	-1	reviewed	p.R144K	0.002	379	0%	482	33%	20	0%	benign(0.001)	tolerated(0.9)	-	NULL
MLL	4297	genome.wustl.edu	37	11	118376962	118376962	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_005933.2	+1	validated	p.H3449P	0.926	85	0%	67	17.9%	1	0%	benign(0.001)	-	-	NULL
SLC2A3	6515	genome.wustl.edu	37	12	8085589	8085589	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_006931.2	-1	validated	p.F88S	1.000	128	0%	97	34%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Sugar_tr,superfamily_MFS general substrate transporter
RIMKLB	57494	genome.wustl.edu	37	12	8906617	8906617	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_020734.2	+1	validated	p.V209M	1.000	411	0.5%	424	26.2%	1	100%	benign(0.217)	deleterious(0)	neutral(0.466)	HMMPfam_RimK,superfamily_Glutathione synthetase ATP-binding domain-like
KRAS	3845	genome.wustl.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	C	T	rs121913529	byCluster	TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_033360.2	-1	reviewed	p.G12D	1.000	274	0%	333	15.3%	0	-	possibly_damaging(0.886)	deleterious(0)	deleterious(0.791)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
METTL20	254013	genome.wustl.edu	37	12	31815091	31815091	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_001135863.1	+1	validated	p.Q68	0.014	138	0%	112	35.7%	0	-	-	-	-	NULL
SCAF11	9169	genome.wustl.edu	37	12	46322089	46322089	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_004719.2	-1	validated	p.D465	0.061	280	0%	233	12%	2	0%	-	-	-	NULL
MLL2	8085	genome.wustl.edu	37	12	49447314	49447314	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_003482.3	-1	validated	p.A262T	0.998	86	0%	72	25%	0	-	unknown(0)	-	-	HMMSmart_SM00184,HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD
SCN8A	6334	genome.wustl.edu	37	12	52200893	52200893	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_014191.2	+1	reviewed	p.A1875T	1.000	48	0%	49	24.5%	0	-	probably_damaging(0.99)	tolerated(0.07)	deleterious(0.760)	NULL
DCD	117159	genome.wustl.edu	37	12	55039005	55039005	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_053283.2	-1	reviewed	p.G81R	0.000	591	0%	492	11.8%	0	-	unknown(0)	deleterious(0)	-	NULL
CKAP4	10970	genome.wustl.edu	37	12	106634089	106634089	+	Silent	SNP	G	G	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_006825.3	-1	validated	p.S174	0.059	59	0%	51	35.3%	8	25%	-	-	-	NULL
TRPV4	59341	genome.wustl.edu	37	12	110232236	110232236	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_021625.4	-1	reviewed	p.W463*	1.000	132	0%	133	15.8%	4	0%	-	-	-	NULL
OAS3	4940	genome.wustl.edu	37	12	113405812	113405812	+	Silent	SNP	C	C	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_006187.2	+1	reviewed	p.A979	1.000	105	0%	83	19.3%	0	-	-	-	-	HMMPfam_OAS1_C,superfamily_PAP/OAS1 substrate-binding domain
MED13L	23389	genome.wustl.edu	37	12	116429262	116429262	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_015335.3	-1	validated	p.A1166V	1.000	146	0%	122	37.7%	1	0%	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	NULL
MED13L	23389	genome.wustl.edu	37	12	116446488	116446488	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_015335.3	-1	validated	p.P577H	1.000	142	0%	137	32.8%	0	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	NULL
FBXW8	26259	genome.wustl.edu	37	12	117448239	117448239	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_153348.2	+1	reviewed	p.G451S	0.998	88	0%	101	15.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00320,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase
FLT3	2322	genome.wustl.edu	37	13	28592607	28592607	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_004119.2	-1	reviewed	p.G846	1.000	229	0%	196	10.2%	1	0%	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
FRY	10129	genome.wustl.edu	37	13	32653101	32653101	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_023037.2	+1	validated	p.L67	1.000	257	0%	239	29.3%	1	100%	-	-	-	NULL
OR5AU1	390445	genome.wustl.edu	37	14	21623948	21623948	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_001004731.1	-1	provisional	p.F79	0.000	92	0%	95	44.2%	0	-	-	-	-	superfamily_SSF81321
MYH7	4625	genome.wustl.edu	37	14	23902428	23902428	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_000257.2	-1	reviewed	p.T70	0.006	273	0%	238	17.6%	0	-	-	-	-	HMMPfam_Myosin_N,superfamily_P-loop containing nucleoside triphosphate hydrolases
HECTD1	25831	genome.wustl.edu	37	14	31575871	31575871	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_015382.2	-1	validated	p.L2403F	1.000	207	0%	165	32.7%	12	33.3%	probably_damaging(0.976)	deleterious(0.01)	deleterious(0.824)	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
LRFN5	145581	genome.wustl.edu	37	14	42356253	42356253	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_152447.3	+1	validated	p.A142V	1.000	181	0%	187	39.6%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52058
LRFN5	145581	genome.wustl.edu	37	14	42356273	42356273	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_152447.3	+1	validated	p.L149I	1.000	190	0%	183	33.3%	0	-	possibly_damaging(0.678)	tolerated(0.05)	deleterious(0.587)	HMMPfam_LRR_1,superfamily_SSF52058
FANCM	57697	genome.wustl.edu	37	14	45669075	45669075	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_020937.2	+1	reviewed	p.S2004L	1.000	164	0%	153	35.9%	10	60%	benign(0.182)	deleterious(0)	neutral(0.461)	superfamily_RuvA domain 2-like
SNAPC1	6617	genome.wustl.edu	37	14	62235384	62235384	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_003082.3	+1	validated	p.R154*	0.051	230	0.4%	186	33.3%	0	-	-	-	-	HMMPfam_SNAPc_SNAP43
C14orf166B	145497	genome.wustl.edu	37	14	77332326	77332326	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_194287.2	+1	validated	p.H423Y	0.000	315	0%	298	29.5%	0	-	benign(0.118)	tolerated(0.09)	neutral(0.306)	NULL
ATP10A	57194	genome.wustl.edu	37	15	25924530	25924530	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_024490.3	-1	reviewed	p.D1486	0.000	64	1.6%	68	17.6%	2	0%	-	-	-	NULL
GABRG3	2567	genome.wustl.edu	37	15	27773095	27773095	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_033223.4	+1	validated	p.S360F	1.000	202	0%	188	32.4%	0	-	benign(0.045)	deleterious(0.04)	neutral(0.351)	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
RYR3	6263	genome.wustl.edu	37	15	33893707	33893707	+	Silent	SNP	C	C	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_001036.3	+1	validated	p.R626	1.000	266	0%	307	30.3%	0	-	-	-	-	HMMPfam_RYDR_ITPR
SPTBN5	51332	genome.wustl.edu	37	15	42143986	42143986	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_016642.2	-1	validated	p.G3514	0.000	36	0%	22	27.3%	1	0%	-	-	-	HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00150,superfamily_PH domain-like
UBR1	197131	genome.wustl.edu	37	15	43328731	43328731	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_174916.2	-1	reviewed	p.L695F	1.000	225	0%	161	32.9%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TMEM62	80021	genome.wustl.edu	37	15	43476729	43476729	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_024956.3	+1	provisional	p.N626T	0.033	153	0%	136	12.5%	15	6.6%	benign(0.134)	tolerated(0.26)	neutral(0.045)	NULL
MAP1A	4130	genome.wustl.edu	37	15	43814382	43814382	+	Silent	SNP	T	T	C	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_002373.5	+1	reviewed	p.A237	0.965	118	0.8%	131	17.6%	1	0%	-	-	-	NULL
LOC100287308	100287308	genome.wustl.edu	37	15	65391911	65391911	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	XM_002343349.1	-1	model	p.A56T	0.989	55	0%	71	16.9%	1	0%	possibly_damaging(0.893)	tolerated(0.54)	neutral(0.359)	NULL
PDCD7	10081	genome.wustl.edu	37	15	65421378	65421378	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_005707.1	-1	reviewed	p.A334V	0.471	409	0%	323	35.9%	1	0%	probably_damaging(0.99)	tolerated(0.16)	deleterious(0.501)	NULL
ISLR	3671	genome.wustl.edu	37	15	74468340	74468340	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_005545.3	+1	validated	p.P381S	0.010	74	0%	78	15.4%	36	0%	possibly_damaging(0.903)	deleterious(0)	deleterious(0.802)	NULL
SIN3A	25942	genome.wustl.edu	37	15	75693185	75693185	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_001145357.1	-1	reviewed	p.G541	1.000	331	0.3%	285	15.4%	1	100%	-	-	-	NULL
ADAMTS7	11173	genome.wustl.edu	37	15	79060540	79060540	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_014272.3	-1	reviewed	p.H860	0.744	30	0%	29	27.6%	1	0%	-	-	-	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
MEX3B	84206	genome.wustl.edu	37	15	82335676	82335676	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_032246.3	-1	provisional	p.R512H	0.280	58	0%	53	13.2%	0	-	probably_damaging(0.999)	tolerated(0.17)	deleterious(0.549)	superfamily_RING/U-box
AKAP13	11214	genome.wustl.edu	37	15	86122493	86122493	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_006738.4	+1	reviewed	p.D398	0.000	99	0%	98	13.3%	1	0%	-	-	-	NULL
PAM16	51025	genome.wustl.edu	37	16	4393291	4393291	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_016069.8	-1	provisional	p.A2V	1.000	34	0%	22	31.8%	40	40%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Pam16
CDR2	1039	genome.wustl.edu	37	16	22358317	22358317	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_001802.1	-1	validated	p.T445I	0.899	518	0%	424	15.8%	6	16.6%	possibly_damaging(0.84)	tolerated(0.07)	deleterious(0.641)	NULL
EARS2	124454	genome.wustl.edu	37	16	23555992	23555992	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_001083614.1	-1	provisional	p.G110S	0.998	53	0%	54	38.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_tRNA-synt_1c,superfamily_SSF52374
TNRC6A	27327	genome.wustl.edu	37	16	24801003	24801003	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_014494.2	+1	reviewed	p.T347S	1.000	123	0%	119	11.8%	0	-	possibly_damaging(0.442)	tolerated(0.16)	neutral(0.204)	NULL
PHKB	5257	genome.wustl.edu	37	16	47698877	47698877	+	Silent	SNP	T	T	C	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_000293.2	+1	reviewed	p.H806	1.000	231	0%	257	30.7%	1	0%	-	-	-	HMMPfam_PHK_AB
ZNF423	23090	genome.wustl.edu	37	16	49672492	49672492	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_015069.2	-1	reviewed	p.D191N	1.000	46	2.2%	45	35.6%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	superfamily_SSF57667
BEAN	146227	genome.wustl.edu	37	16	66514579	66514579	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_001136106.3	+1	reviewed	p.T68	0.000	26	0%	16	43.8%	0	-	-	-	-	NULL
PHLPP2	23035	genome.wustl.edu	37	16	71724484	71724484	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_015020.2	-1	validated	p.V183I	1.000	152	0%	86	64%	0	-	probably_damaging(0.984)	tolerated(0.06)	deleterious(0.753)	superfamily_PH domain-like
TAF1C	9013	genome.wustl.edu	37	16	84213875	84213875	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_005679.2	-1	reviewed	p.L488F	0.034	29	0%	23	39.1%	3	100%	benign(0.006)	tolerated(0.17)	neutral(0.059)	NULL
P2RX1	5023	genome.wustl.edu	37	17	3802962	3802962	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_002558.2	-1	reviewed	p.E281K	0.936	208	0%	169	30.8%	0	-	benign(0.069)	tolerated(0.84)	neutral(0.005)	HMMPfam_P2X_receptor
WSCD1	23302	genome.wustl.edu	37	17	6023672	6023672	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_015253.1	+1	validated	p.S473	0.869	71	0%	40	32.5%	0	-	-	-	-	superfamily_SSF52540
TNK1	8711	genome.wustl.edu	37	17	7288008	7288008	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_003985.3	+1	validated	p.R358C	0.987	29	0%	30	33.3%	2	50%	probably_damaging(0.974)	deleterious(0.01)	deleterious(0.822)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
DHRS7B	25979	genome.wustl.edu	37	17	21087118	21087118	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_015510.3	+1	validated	p.T174M	0.998	339	0.6%	351	34.5%	51	43.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_adh_short,superfamily_NAD(P)-bd
KCNJ12	3768	genome.wustl.edu	37	17	21319360	21319360	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_021012.4	+1	validated	p.R236W	0.036	101	1%	75	12%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_IRK,superfamily_Ig_E-set
ENSG00000167524	0	genome.wustl.edu	37	17	26940566	26940566	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	ENST00000301037	-1	known	p.A72	0.396	167	0%	117	35.9%	0	-	-	-	-	NULL
NSRP1	84081	genome.wustl.edu	37	17	28499584	28499584	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_032141.2	+1	validated	p.R47G	1.000	142	0%	130	35.4%	4	75%	probably_damaging(0.995)	deleterious(0.04)	deleterious(0.806)	NULL
ATAD5	79915	genome.wustl.edu	37	17	29185249	29185249	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_024857.3	+1	provisional	p.N955S	1.000	236	0%	191	17.3%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ACACA	31	genome.wustl.edu	37	17	35445880	35445880	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_198834.1	-1	reviewed	p.I2341F	1.000	405	0%	342	35.1%	10	30%	probably_damaging(0.994)	deleterious(0.02)	deleterious(0.835)	NULL
PNMT	5409	genome.wustl.edu	37	17	37826423	37826425	+	In_Frame_Del	DEL	CCT	CCT	-	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	CCT	CCT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_002686.3	+1	reviewed	p.L213in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_NNMT_PNMT_TEMT,superfamily_SSF53335
ZPBP2	124626	genome.wustl.edu	37	17	38027751	38027751	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_199321.2	+1	validated	p.Q93H	0.999	270	0%	259	13.1%	0	-	benign(0.008)	tolerated(0.07)	neutral(0.319)	HMMPfam_Sp38
NR1D1	9572	genome.wustl.edu	37	17	38251980	38251980	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_021724.2	-1	provisional	p.S322N	0.995	172	0%	204	34.3%	5	20%	benign(0.001)	tolerated(0.36)	neutral(0.020)	NULL
ENSG00000245085	0	genome.wustl.edu	37	17	38497436	38497436	+	RNA	SNP	A	A	G	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	ENST00000501561	-1	known	NULL	0.994	58	1.7%	66	16.7%	7	14.2%	-	-	-	-
KRTAP17-1	83902	genome.wustl.edu	37	17	39471619	39471619	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_031964.1	-1	reviewed	p.C95Y	1.000	227	0%	181	25.4%	0	-	unknown(0)	-	-	NULL
C17orf53	78995	genome.wustl.edu	37	17	42225982	42225982	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_024032.3	+1	validated	p.Q271*	0.000	115	0%	97	21.6%	2	0%	-	-	-	NULL
NMT1	4836	genome.wustl.edu	37	17	43175900	43175900	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_021079.3	+1	provisional	p.K289fs	1.000	-	-	-	-	-	-	-	-	-	HMMPfam_NMT,superfamily_Acyl-CoA N-acyltransferases (Nat)
SPPL2C	162540	genome.wustl.edu	37	17	43923818	43923818	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_175882.2	+1	validated	p.A516P	1.000	43	0%	31	32.3%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMSmart_SM00730,HMMPfam_Peptidase_A22B
GOSR2	9570	genome.wustl.edu	37	17	45009562	45009562	+	Silent	SNP	T	T	C	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_054022.2	+1	reviewed	p.T111	0.367	86	0%	73	17.8%	23	8.6%	-	-	-	HMMPfam_V-SNARE
FAM117A	81558	genome.wustl.edu	37	17	47797766	47797766	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_030802.3	-1	validated	p.T165	0.964	93	0%	80	46.3%	2	0%	-	-	-	NULL
ITGA3	3675	genome.wustl.edu	37	17	48153809	48153809	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_005501.2	+1	reviewed	p.N598	1.000	69	0%	56	16.1%	12	16.6%	-	-	-	HMMPfam_Integrin_alpha2,superfamily_Integrin domains
BRIP1	83990	genome.wustl.edu	37	17	59853825	59853825	+	Silent	SNP	T	T	C	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_032043.1	-1	reviewed	p.A678	0.943	116	0%	155	19.4%	0	-	-	-	-	NULL
LRRC37A3	374819	genome.wustl.edu	37	17	62856436	62856436	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_199340.2	-1	provisional	p.T1276	0.001	417	0%	396	34.1%	3	33.3%	-	-	-	NULL
CACNG5	27091	genome.wustl.edu	37	17	64881156	64881156	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_145811.1	+1	reviewed	p.M209I	1.000	76	0%	57	40.4%	0	-	benign(0)	tolerated(0.14)	neutral(0.249)	NULL
GPR142	350383	genome.wustl.edu	37	17	72366756	72366756	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_181790.1	+1	provisional	p.P152L	0.959	173	0.6%	149	16.1%	0	-	benign(0.026)	tolerated(0.07)	neutral(0.320)	superfamily_SSF81321
CD300LF	146722	genome.wustl.edu	37	17	72691274	72691274	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_139018.3	-1	validated	p.P278	0.000	86	0%	82	30.5%	3	0%	-	-	-	NULL
OTOP3	347741	genome.wustl.edu	37	17	72945386	72945386	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_178233.1	+1	provisional	p.G556R	0.869	74	0%	72	33.3%	0	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_DUF270
EVPL	2125	genome.wustl.edu	37	17	74005789	74005789	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_001988.2	-1	validated	p.N1166fs	0.008	-	-	-	-	-	-	-	-	-	NULL
EVPL	2125	genome.wustl.edu	37	17	74019391	74019391	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_001988.2	-1	validated	p.R154	0.000	125	0%	94	11.7%	1	0%	-	-	-	NULL
DNAH17	8632	genome.wustl.edu	37	17	76471383	76471383	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	ENST00000389840	-1	known	p.G2816C	1.000	50	0%	59	28.8%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH17	8632	genome.wustl.edu	37	17	76533473	76533473	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	ENST00000389840	-1	known	p.G923S	0.649	117	0%	87	12.6%	0	-	benign(0.001)	tolerated(0.27)	neutral(0.034)	NULL
SLC38A10	124565	genome.wustl.edu	37	17	79219977	79219977	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_001037984.1	-1	validated	p.L913	0.000	39	0%	42	26.2%	36	33.3%	-	-	-	NULL
STRA13	201254	genome.wustl.edu	37	17	79977189	79977189	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_144998.2	-1	validated	p.E53K	1.000	30	0%	25	20%	34	11.7%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_DUF2008
YES1	7525	genome.wustl.edu	37	18	732851	732851	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_005433.3	-1	reviewed	p.G469fs	1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
DSG1	1828	genome.wustl.edu	37	18	28913559	28913559	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_001942.2	+1	reviewed	p.G231D	0.102	176	0%	164	24.4%	0	-	benign(0.004)	tolerated(0.08)	neutral(0.300)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
TRAPPC8	22878	genome.wustl.edu	37	18	29437772	29437772	+	Silent	SNP	T	T	C	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_014939.3	-1	validated	p.S973	0.972	127	0%	119	10.1%	3	0%	-	-	-	NULL
FECH	2235	genome.wustl.edu	37	18	55218560	55218560	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_001012515.2	-1	reviewed	p.P381Q	1.000	241	0%	172	28.5%	3	0%	probably_damaging(0.978)	tolerated(0.06)	deleterious(0.743)	HMMPfam_Ferrochelatase,superfamily_Chelatase
POLRMT	5442	genome.wustl.edu	37	19	629936	629936	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_005035.3	-1	reviewed	p.A142	0.000	44	0%	46	13%	1	0%	-	-	-	NULL
C19orf21	126353	genome.wustl.edu	37	19	758475	758475	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_173481.2	+1	predicted	p.R510Q	0.208	47	0%	25	44%	26	38.4%	benign(0)	tolerated(0.4)	neutral(0.016)	NULL
ZNF554	115196	genome.wustl.edu	37	19	2823051	2823051	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_001102651.1	+1	validated	p.G23*	0.001	95	0%	100	40%	0	-	-	-	-	NULL
VAV1	7409	genome.wustl.edu	37	19	6772959	6772959	+	Silent	SNP	T	T	C	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_005428.2	+1	reviewed	p.L47	1.000	96	0%	77	33.8%	0	-	-	-	-	HMMPfam_CH,HMMSmart_CH,superfamily_Calponin-homology
CAMSAP3	57662	genome.wustl.edu	37	19	7675602	7675602	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_001080429.2	+1	validated	p.M333T	1.000	198	0%	165	33.3%	4	75%	benign(0)	deleterious(0)	neutral(0.445)	superfamily_Calponin-homology domain CH-domain
KANK3	256949	genome.wustl.edu	37	19	8398950	8398961	+	In_Frame_Del	DEL	TCGCTGTCGCCA	TCGCTGTCGCCA	-	rs111751275	byCluster;by1000genomes	TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	TCGCTGTCGCCA	TCGCTGTCGCCA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_198471.2	-1	validated	p.DGDS489in_frame_del	0.002:0.046:0.028:0.025:0.017:0.004:0.003:0.002:0.000:0.001:0.003:0.001	-	-	-	-	-	-	-	-	-	NULL
COL5A3	50509	genome.wustl.edu	37	19	10081652	10081652	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_015719.3	-1	reviewed	p.P1294L	0.964	289	0.3%	368	31.5%	0	-	unknown(0)	deleterious(0)	-	HMMPfam_Collagen
WIZ	58525	genome.wustl.edu	37	19	15537872	15537872	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_021241.2	-1	validated	p.P334	0.027	140	0%	83	41%	4	25%	-	-	-	NULL
CPAMD8	27151	genome.wustl.edu	37	19	17132956	17132956	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_015692.2	-1	validated	p.A90E	0.521	52	0%	84	38.1%	0	-	possibly_damaging(0.604)	tolerated(0.22)	neutral(0.252)	HMMPfam_A2M_N
SLC27A1	376497	genome.wustl.edu	37	19	17599708	17599708	+	Silent	SNP	T	T	C	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_198580.1	+1	provisional	p.A282	0.000	26	0%	33	57.6%	1	0%	-	-	-	HMMPfam_AMP-binding,superfamily_SSF56801
PIK3R2	5296	genome.wustl.edu	37	19	18273784	18273784	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_005027.2	+1	validated	p.G373R	0.998	109	0%	108	32.4%	7	14.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain
TSHZ3	57616	genome.wustl.edu	37	19	31768835	31768835	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_020856.2	-1	validated	p.A622T	0.998	78	0%	60	25%	0	-	probably_damaging(0.955)	tolerated(0.33)	neutral(0.423)	NULL
KCTD15	79047	genome.wustl.edu	37	19	34297827	34297828	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_001129994.1	+1	validated	p.I103fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_POZ domain
MLL4	9757	genome.wustl.edu	37	19	36216171	36216171	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_014727.1	+1	reviewed	p.L1193	1.000	78	0%	54	35.2%	0	-	-	-	-	NULL
SPHK2	56848	genome.wustl.edu	37	19	49132784	49132784	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_020126.3	+1	provisional	p.S573	0.016	17	0%	18	27.8%	7	28.5%	-	-	-	NULL
LHB	3972	genome.wustl.edu	37	19	49519457	49519457	+	Silent	SNP	G	G	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_000894.2	-1	reviewed	p.P98	0.604	85	0%	92	35.9%	1	0%	-	-	-	HMMSmart_GHB,HMMPfam_Cys_knot,superfamily_SSF57501
PPP2R1A	5518	genome.wustl.edu	37	19	52719116	52719116	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_014225.5	+1	reviewed	p.V298L	1.000	88	0%	71	32.4%	60	45%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HEAT,superfamily_ARM repeat
SSC5D	284297	genome.wustl.edu	37	19	56012113	56012113	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_001144950.1	+1	provisional	p.S853	0.000	36	0%	49	36.7%	1	0%	-	-	-	HMMPfam_SRCR,HMMSmart_SM00202,superfamily_SRCR-like
CHMP2A	27243	genome.wustl.edu	37	19	59063699	59063699	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_014453.2	-1	validated	p.T92I	1.000	101	0%	135	35.6%	341	42.2%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_Snf7
LAMP5	24141	genome.wustl.edu	37	20	9498736	9498736	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_012261.2	+1	validated	p.P175	0.987	113	0%	132	19.7%	1	0%	-	-	-	HMMPfam_Lamp
DZANK1	55184	genome.wustl.edu	37	20	18429707	18429707	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_001099407.1	-1	validated	p.G184S	0.818	270	0%	255	14.1%	0	-	benign(0.009)	tolerated(0.28)	neutral(0.032)	NULL
XRN2	22803	genome.wustl.edu	37	20	21324736	21324736	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_012255.3	+1	reviewed	p.S473	0.462	129	0%	152	36.2%	5	0%	-	-	-	NULL
CD93	22918	genome.wustl.edu	37	20	23066104	23066106	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_012072.3	-1	reviewed	p.E242in_frame_del	0.048:0.087:0.110	-	-	-	-	-	-	-	-	-	NULL
BPIFB1	92747	genome.wustl.edu	37	20	31876632	31876632	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_033197.2	+1	reviewed	p.A67	0.000	28	0%	29	41.4%	0	-	-	-	-	HMMPfam_LBP_BPI_CETP,HMMSmart_SM00328
E2F1	1869	genome.wustl.edu	37	20	32264598	32264598	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_005225.2	-1	reviewed	p.G418	0.019	25	0%	27	29.6%	9	22.2%	-	-	-	NULL
C20orf118	140711	genome.wustl.edu	37	20	35509095	35509095	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_080628.1	+1	predicted	p.S127N	1.000	307	0%	279	19.4%	0	-	probably_damaging(0.998)	deleterious(0.05)	deleterious(0.820)	HMMPfam_TLD,HMMSmart_TLDc
LPIN3	64900	genome.wustl.edu	37	20	39974539	39974539	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_022896.1	+1	validated	p.D32	0.960	75	0%	82	12.2%	0	-	-	-	-	HMMPfam_Lipin_N
JPH2	57158	genome.wustl.edu	37	20	42788525	42788525	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_020433.4	-1	reviewed	p.S301L	1.000	75	0%	44	20.5%	1	0%	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	HMMPfam_MORN,HMMSmart_SM00698,superfamily_Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain
CASS4	57091	genome.wustl.edu	37	20	55027850	55027850	+	Missense_Mutation	SNP	C	C	T	rs186338077	by1000genomes	TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_020356.3	+1	validated	p.R540C	0.002	163	0%	106	11.3%	0	-	benign(0.001)	tolerated(0.34)	neutral(0.023)	HMMPfam_Serine_rich
CASS4	57091	genome.wustl.edu	37	20	55028000	55028000	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_020356.3	+1	validated	p.R590W	0.924	159	0%	124	30.6%	0	-	probably_damaging(0.967)	deleterious(0.02)	deleterious(0.792)	HMMPfam_Serine_rich
COL20A1	57642	genome.wustl.edu	37	20	61956676	61956676	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	ENST00000326996	+1	known	p.G1124D	1.000	50	0%	37	29.7%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_Collagen
CLDN17	26285	genome.wustl.edu	37	21	31538422	31538422	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_012131.2	-1	reviewed	p.A172T	0.000	213	0%	187	19.3%	0	-	benign(0.001)	tolerated(0.18)	neutral(0.056)	HMMPfam_PMP22_Claudin
IFNAR1	3454	genome.wustl.edu	37	21	34715932	34715932	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_000629.2	+1	reviewed	p.T208M	0.000	282	0%	257	31.5%	2	0%	possibly_damaging(0.551)	tolerated(0.27)	neutral(0.221)	superfamily_Fibronectin type III
KCNJ6	3763	genome.wustl.edu	37	21	39086686	39086686	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_002240.2	-1	reviewed	p.T258	0.020	175	0%	174	19%	0	-	-	-	-	HMMPfam_IRK,superfamily_Ig_E-set
UFD1L	7353	genome.wustl.edu	37	22	19463043	19463043	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_005659.6	-1	reviewed	p.S29F	1.000	265	0%	308	17.5%	52	19.2%	probably_damaging(0.971)	deleterious(0)	deleterious(0.857)	HMMPfam_UFD1
IGLC7	28834	genome.wustl.edu	37	22	23264778	23264778	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	ENST00000390331	+1	known	p.L5	0.002	147	0%	138	34.8%	176	0.5%	benign(0.001)	tolerated(0.18)	neutral(0.056)	superfamily_Immunoglobulin
APOBEC3H	164668	genome.wustl.edu	37	22	39498030	39498030	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_181773.3	+1	reviewed	p.R176W	0.007	61	0%	57	33.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RABL2B	11158	genome.wustl.edu	37	22	51220636	51220636	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_001130923.1	-1	reviewed	p.D29	1.000	848	0%	843	20.5%	3	33.3%	-	-	-	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
ARHGAP6	395	genome.wustl.edu	37	X	11157568	11157568	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_013427.2	-1	reviewed	p.W780*	0.981	15	0%	15	26.7%	0	-	-	-	-	NULL
TLR7	51284	genome.wustl.edu	37	X	12904696	12904696	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_016562.3	+1	reviewed	p.R357C	0.474	101	0%	85	36.5%	0	-	possibly_damaging(0.783)	tolerated(0.11)	deleterious(0.565)	superfamily_L domain-like
MAP3K15	389840	genome.wustl.edu	37	X	19389135	19389135	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_001001671.3	-1	validated	p.F589	1.000	68	0%	46	21.7%	0	-	-	-	-	NULL
DMD	1756	genome.wustl.edu	37	X	32509516	32509516	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_004006.2	-1	reviewed	p.A834T	0.998	349	0.6%	253	33.6%	0	-	benign(0.001)	tolerated(0.6)	neutral(0.004)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
FAM47C	442444	genome.wustl.edu	37	X	37028374	37028374	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_001013736.2	+1	validated	p.R631C	0.000	211	0%	143	26.6%	0	-	possibly_damaging(0.579)	tolerated(0.06)	deleterious(0.522)	NULL
BCOR	54880	genome.wustl.edu	37	X	39921444	39921444	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_001123385.1	-1	reviewed	p.N1459S	1.000	142	0%	129	36.4%	5	60%	probably_damaging(0.985)	deleterious(0)	deleterious(0.877)	superfamily_Ankyrin repeat
ZNF630	57232	genome.wustl.edu	37	X	47918043	47918043	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_001037735.2	-1	validated	p.E596	1.000	362	0%	293	35.5%	2	100%	-	-	-	superfamily_SSF57667
GRIPAP1	56850	genome.wustl.edu	37	X	48832711	48832711	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_020137.3	-1	reviewed	p.A709V	0.999	25	0%	24	33.3%	14	71.4%	possibly_damaging(0.5)	tolerated(0.28)	neutral(0.199)	NULL
GPKOW	27238	genome.wustl.edu	37	X	48980024	48980024	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_015698.4	-1	validated	p.A17T	0.146	84	0%	53	18.9%	3	66.6%	benign(0.372)	tolerated(0.07)	neutral(0.438)	NULL
ARHGEF9	23229	genome.wustl.edu	37	X	62875576	62875576	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_015185.2	-1	reviewed	p.I366	1.000	360	0%	343	13.4%	7	14.2%	-	-	-	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
LOC100289421	100289421	genome.wustl.edu	37	X	77359752	77359752	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	XM_002343831.1	-1	model	p.C63S	0.000	49	0%	42	38.1%	4	75%	-	-	-	NULL
RGAG1	57529	genome.wustl.edu	37	X	109695579	109695579	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_020769.2	+1	validated	p.P578	0.124	174	0%	150	18%	0	-	-	-	-	NULL
GPR112	139378	genome.wustl.edu	37	X	135430848	135430848	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_153834.3	+1	reviewed	p.T1661	0.001	129	0%	132	31.8%	0	-	-	-	-	NULL
ATP11C	286410	genome.wustl.edu	37	X	138878543	138878543	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VW-01A-11D-A122-09	TCGA-BG-A0VW-10A-01D-A122-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ae8e34ed-9c5c-4407-ac52-8e8d78cbbc39	a9cd1596-89b6-46fd-9864-8a62f47d1f8b	NM_173694.4	-1	validated	p.M368I	1.000	153	0%	168	11.3%	1	0%	possibly_damaging(0.887)	deleterious(0.02)	deleterious(0.730)	NULL
