Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
ATAD3A	55210	genome.wustl.edu	37	1	1451455	1451455	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_018188.3	+1	validated	p.Q90R	1.000	20	0%	58	37.9%	8	25%	benign(0.048)	tolerated(0.11)	neutral(0.275)	NULL
GABRD	2563	genome.wustl.edu	37	1	1960557	1960557	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_000815.4	+1	reviewed	p.Q233	0.999	12	0%	27	22.2%	0	-	-	-	-	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD
PTCHD2	57540	genome.wustl.edu	37	1	11561569	11561569	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_020780.1	+1	validated	p.V174I	0.000	8	0.000	11	0.545	1	100%	benign(0)	tolerated(0.24)	neutral(0.037)	NULL
PRDM2	7799	genome.wustl.edu	37	1	14057606	14057606	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_012231.4	+1	reviewed	p.R41W	1.000	34	0%	34	47.1%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain
CELA2A	63036	genome.wustl.edu	37	1	15792498	15792498	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_033440.2	+1	reviewed	p.N166	0.876	44	0%	94	23.4%	0	-	-	-	-	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
RAP1GAP	5909	genome.wustl.edu	37	1	21977931	21977931	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	ENST00000374757	-1	known	p.R78C	0.001	8	0.000	5	0.800	0	-	unknown(0)	-	-	NULL
USP48	84196	genome.wustl.edu	37	1	22056252	22056252	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_032236.5	-1	reviewed	p.M415I	1.000	209	0%	258	41.9%	34	44.1%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_UCH,superfamily_Cysteine proteinases
MYOM3	127294	genome.wustl.edu	37	1	24397702	24397702	+	Nonsense_Mutation	SNP	G	G	A	rs183674235	by1000genomes	TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_152372.3	-1	validated	p.R1019*	0.086	52	0%	79	31.6%	1	0%	-	-	-	HMMSmart_SM00409,superfamily_Immunoglobulin
RBBP4	5928	genome.wustl.edu	37	1	33117531	33117531	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	ENST00000401893	+1	known	p.Q32R	0.970	76	0%	94	40.4%	37	48.6%	-	-	-	NULL
RNF19B	127544	genome.wustl.edu	37	1	33402734	33402734	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_153341.2	-1	validated	p.E624D	0.894	57	0%	79	44.3%	27	37%	benign(0.004)	deleterious(0.01)	neutral(0.406)	NULL
CSMD2	114784	genome.wustl.edu	37	1	33998830	33998830	+	Splice_Site	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_052896.3	-1	validated	e63-1	1.000	12	0%	29	31%	1	0%	-	-	-	-
ZNF684	127396	genome.wustl.edu	37	1	41012248	41012248	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_152373.3	+1	validated	p.L85V	0.000	75	0%	85	31.8%	2	0%	benign(0.143)	tolerated(0.35)	neutral(0.033)	NULL
HIVEP3	59269	genome.wustl.edu	37	1	42048495	42048495	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_024503.3	-1	validated	p.Y658*	0.731	118	0%	105	41%	0	-	-	-	-	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
SLC6A9	6536	genome.wustl.edu	37	1	44476454	44476454	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_201649.2	-1	validated	p.A117D	1.000	60	0%	134	38.1%	8	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SNF
HPDL	84842	genome.wustl.edu	37	1	45793688	45793688	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_032756.2	+1	validated	p.Q290*	1.000	31	0%	33	30.3%	0	-	-	-	-	superfamily_Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
MKNK1	8569	genome.wustl.edu	37	1	47027214	47027214	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_003684.4	-1	validated	p.L355P	1.000	89	0%	115	42.6%	21	33.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
CPT2	1376	genome.wustl.edu	37	1	53679117	53679117	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_000098.2	+1	reviewed	p.G609	1.000	100	0%	155	41.9%	25	32%	-	-	-	HMMPfam_Carn_acyltransf,superfamily_CoA-dependent acyltransferases
USP24	23358	genome.wustl.edu	37	1	55591192	55591192	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_015306.2	-1	validated	p.T1094M	0.726	213	0%	196	38.3%	6	50%	benign(0.073)	tolerated(0.08)	neutral(0.305)	NULL
NFIA	4774	genome.wustl.edu	37	1	61869839	61869839	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_001145512.1	+1	reviewed	p.G425V	1.000	133	0.8%	160	34.4%	15	46.6%	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	HMMPfam_CTF_NFI
DIRAS3	9077	genome.wustl.edu	37	1	68512685	68512685	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_004675.2	-1	reviewed	p.R99H	0.536	22	0%	42	47.6%	3	0%	probably_damaging(0.994)	deleterious(0.03)	deleterious(0.817)	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,superfamily_P-loop containing nucleoside triphosphate hydrolases
HS2ST1	9653	genome.wustl.edu	37	1	87570305	87570305	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_012262.3	+1	reviewed	p.R333*	0.999	75	0%	81	22.2%	5	20%	-	-	-	HMMPfam_HS2ST
COL11A1	1301	genome.wustl.edu	37	1	103491841	103491841	+	Silent	SNP	T	T	G	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_001854.3	-1	reviewed	p.A276	1.000	273	0%	299	28.4%	0	-	-	-	-	NULL
CELSR2	1952	genome.wustl.edu	37	1	109801502	109801502	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_001408.2	+1	reviewed	p.A1253	1.000	10	0%	37	35.1%	4	25%	-	-	-	HMMPfam_EGF,HMMSmart_EGF,superfamily_SSF57196
SETDB1	9869	genome.wustl.edu	37	1	150921904	150921904	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_001145415.1	+1	reviewed	p.R495*	1.000	100	0%	145	42.8%	5	20%	-	-	-	NULL
KPRP	448834	genome.wustl.edu	37	1	152732925	152732925	+	Silent	SNP	C	C	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_001025231.1	+1	provisional	p.P287	0.001	29	0%	31	35.5%	0	-	-	-	-	NULL
ZBTB7B	51043	genome.wustl.edu	37	1	154988705	154988705	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_015872.2	+1	validated	p.K388N	1.000	10	0%	47	34%	46	32.6%	possibly_damaging(0.947)	tolerated(0.12)	deleterious(0.651)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
MNDA	4332	genome.wustl.edu	37	1	158813155	158813155	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_002432.1	+1	reviewed	p.A118T	0.000	39	0%	56	33.9%	4	0%	benign(0.003)	tolerated(1)	-	NULL
IGSF9	57549	genome.wustl.edu	37	1	159900121	159900121	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_001135050.1	-1	validated	p.L641P	0.994	12	0%	36	33.3%	14	78.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
KIFAP3	22920	genome.wustl.edu	37	1	170003518	170003520	+	In_Frame_Del	DEL	TTC	TTC	-	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	TTC	TTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_014970.2	-1	reviewed	p.K246in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_KAP,superfamily_ARM repeat
ZNF648	127665	genome.wustl.edu	37	1	182025535	182025535	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_001009992.1	-1	provisional	p.C537	0.997	71	0%	160	40.6%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
NCF2	4688	genome.wustl.edu	37	1	183536457	183536457	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_000433.3	-1	reviewed	p.R246H	0.997	87	0%	88	40.9%	3	0%	probably_damaging(0.997)	deleterious(0.04)	deleterious(0.815)	HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3
CDC73	79577	genome.wustl.edu	37	1	193111167	193111167	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_024529.4	+1	reviewed	p.R234*	1.000	101	0%	71	40.8%	12	16.6%	-	-	-	HMMPfam_CDC73
KIF21B	23046	genome.wustl.edu	37	1	200972744	200972744	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_017596.2	-1	provisional	p.R394	0.991	79	0%	134	37.3%	0	-	-	-	-	NULL
LGR6	59352	genome.wustl.edu	37	1	202245472	202245472	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_001017403.1	+1	reviewed	p.R156K	1.000	25	0%	28	42.9%	1	0%	benign(0.001)	tolerated(0.6)	neutral(0.004)	HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00364,superfamily_RNI-like
NFASC	23114	genome.wustl.edu	37	1	204966470	204966470	+	Silent	SNP	T	T	C	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	ENST00000367172	+1	known	p.A1092	0.381	191	0%	397	41.6%	0	-	-	-	-	NULL
PFKFB2	5208	genome.wustl.edu	37	1	207242777	207242777	+	Silent	SNP	T	T	C	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_006212.2	+1	reviewed	p.C332	0.896	102	0%	103	31.1%	2	0%	-	-	-	HMMPfam_PGAM,superfamily_Phosphoglycerate mutase-like
ACTA1	58	genome.wustl.edu	37	1	229568041	229568041	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_001100.3	-1	reviewed	p.R198C	1.000	16	0%	29	34.5%	0	-	possibly_damaging(0.593)	-	-	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
OR14C36	127066	genome.wustl.edu	37	1	248512079	248512079	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_001001918.1	+1	provisional	p.M1I	0.722	88	0%	89	36%	0	-	possibly_damaging(0.664)	deleterious(0.01)	deleterious(0.641)	superfamily_SSF81321
LOC729769	729769	genome.wustl.edu	37	2	26217722	26217722	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	XM_001131246.3	+1	model	p.E38	0.912	94	0%	121	44.6%	0	-	-	-	-	superfamily_Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
CEBPZ	10153	genome.wustl.edu	37	2	37455613	37455613	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_005760.2	-1	validated	p.S241	0.000	102	1%	117	45.3%	9	55.5%	-	-	-	NULL
GALM	130589	genome.wustl.edu	37	2	38908466	38908466	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_138801.2	+1	reviewed	p.S130	0.001	45	0%	34	38.2%	28	46.4%	-	-	-	HMMPfam_Aldose_epim,superfamily_Galactose mutarotase-like
TMEM178	130733	genome.wustl.edu	37	2	39944377	39944377	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_152390.2	+1	validated	p.D294Y	1.000	91	0%	102	40.2%	86	53.4%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ZFP36L2	678	genome.wustl.edu	37	2	43452495	43452496	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_006887.4	-1	reviewed	p.N149fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
THADA	63892	genome.wustl.edu	37	2	43802152	43802152	+	Missense_Mutation	SNP	G	G	A	rs138256193	by1000genomes	TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_001083953.1	-1	validated	p.T351M	0.997	88	0%	69	37.7%	5	0%	probably_damaging(0.978)	deleterious(0)	deleterious(0.865)	NULL
PSME4	23198	genome.wustl.edu	37	2	54146372	54146372	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_014614.2	-1	validated	p.L811P	0.995	99	0%	130	34.6%	15	40%	possibly_damaging(0.657)	tolerated(0.25)	neutral(0.269)	NULL
SPTBN1	6711	genome.wustl.edu	37	2	54851941	54851941	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_003128.2	+1	reviewed	p.A395T	1.000	25	0%	33	36.4%	14	42.8%	possibly_damaging(0.575)	deleterious(0)	deleterious(0.641)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
EML6	400954	genome.wustl.edu	37	2	55186384	55186384	+	Silent	SNP	C	C	T	rs182241171	by1000genomes	TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_001039753.2	+1	validated	p.G1613	0.003	32	0%	46	30.4%	0	-	-	-	-	HMMSmart_SM00320,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase
SLC1A4	6509	genome.wustl.edu	37	2	65243638	65243638	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_003038.3	+1	validated	p.V289M	0.149	68	0%	112	34.8%	20	35%	benign(0.002)	tolerated(0.16)	neutral(0.059)	HMMPfam_SDF
ALMS1	7840	genome.wustl.edu	37	2	73679192	73679192	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_015120.4	+1	reviewed	p.L1845	0.000	65	0%	47	42.6%	0	-	-	-	-	NULL
C2orf81	388963	genome.wustl.edu	37	2	74642070	74642070	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_001145054.1	-1	predicted	p.E385K	0.000	9	0.000	18	0.222	14	28.5%	benign(0.004)	tolerated(0.33)	neutral(0.024)	NULL
FAM176A	84141	genome.wustl.edu	37	2	75720574	75720574	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_001135032.1	-1	validated	p.D83N	1.000	13	0%	39	38.5%	3	0%	probably_damaging(1)	tolerated(0.16)	deleterious(0.559)	NULL
RMND5A	64795	genome.wustl.edu	37	2	86997177	86997180	+	Frame_Shift_Del	DEL	TTAA	TTAA	-	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	TTAA	TTAA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_022780.3	+1	validated	p.I297fs	0.578:0.996:0.996:1.000	-	-	-	-	-	-	-	-	-	HMMSmart_SM00757
INPP4A	3631	genome.wustl.edu	37	2	99154342	99154342	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_001134224.1	+1	reviewed	p.R162C	1.000	44	0%	76	39.5%	2	50%	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	NULL
AFF3	3899	genome.wustl.edu	37	2	100623168	100623168	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_001025108.1	-1	reviewed	p.V292I	0.301	20	0%	41	19.5%	0	-	possibly_damaging(0.808)	tolerated(0.54)	neutral(0.311)	HMMPfam_AF-4
IL1R1	3554	genome.wustl.edu	37	2	102793124	102793124	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_000877.2	+1	reviewed	p.P539S	1.000	42	0%	46	30.4%	14	35.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00255,superfamily_Toll/Interleukin receptor TIR domain
SAP130	79595	genome.wustl.edu	37	2	128699728	128699728	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_024545.3	-1	validated	p.Q1000R	1.000	146	0.7%	128	42.2%	30	40%	benign(0.25)	deleterious(0)	deleterious(0.470)	NULL
EPC2	26122	genome.wustl.edu	37	2	149542570	149542571	+	Frame_Shift_Ins	INS	-	-	GT	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_015630.3	+1	validated	p.E785fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_E_Pc_C
RIF1	55183	genome.wustl.edu	37	2	152279514	152279514	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	ENST00000414861	+1	known	p.R240C	0.879	105	0%	117	40.2%	1	100%	-	-	-	superfamily_ARM repeat
LY75	4065	genome.wustl.edu	37	2	160735160	160735160	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_002349.2	-1	validated	p.L530V	1.000	182	0%	173	35.3%	1	0%	probably_damaging(1)	tolerated(0.56)	deleterious(0.506)	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like
DPP4	1803	genome.wustl.edu	37	2	162868382	162868382	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_001935.3	-1	reviewed	p.Y585H	1.000	115	0%	127	40.9%	8	37.5%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Peptidase_S9,superfamily_alpha/beta-Hydrolases
XIRP2	129446	genome.wustl.edu	37	2	168100558	168100558	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_152381.4	+1	validated	p.A886S	0.003	34	0%	34	47.1%	0	-	possibly_damaging(0.897)	tolerated(0.19)	neutral(0.403)	NULL
XIRP2	129446	genome.wustl.edu	37	2	168103376	168103376	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_152381.4	+1	validated	p.Q1825R	0.134	64	0%	65	35.4%	0	-	possibly_damaging(0.896)	tolerated(0.26)	neutral(0.387)	HMMPfam_Xin
LRP2	4036	genome.wustl.edu	37	2	170139451	170139451	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_004525.2	-1	reviewed	p.R368H	0.007	59	0%	104	10.6%	0	-	benign(0)	tolerated(0.06)	neutral(0.323)	HMMSmart_EGF,superfamily_Grow_fac_recept
TTN	7273	genome.wustl.edu	37	2	179497357	179497357	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	ENST00000356127	-1	known	p.G11891D	1.000	187	0%	172	43%	0	-	benign(0.29)	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179594422	179594422	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	ENST00000356127	-1	known	p.T4942	0.019	70	0%	84	11.9%	0	-	-	-	-	HMMSmart_SM00409,HMMPfam_I-set
ZNF804A	91752	genome.wustl.edu	37	2	185802718	185802718	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_194250.1	+1	provisional	p.I865	0.000	59	0%	49	57.1%	0	-	-	-	-	NULL
SPAG16	79582	genome.wustl.edu	37	2	215274985	215274985	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_024532.3	+1	validated	p.D614	0.000	98	0%	125	36.8%	0	-	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
GIGYF2	26058	genome.wustl.edu	37	2	233620987	233620987	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_001103147.1	+1	reviewed	p.G108R	1.000	73	0%	108	10.2%	6	0%	probably_damaging(0.989)	deleterious(0.02)	deleterious(0.823)	NULL
CHL1	10752	genome.wustl.edu	37	3	423919	423919	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_006614.2	+1	reviewed	p.R645Q	1.000	79	0%	78	38.5%	0	-	benign(0.013)	tolerated(0.65)	neutral(0.004)	HMMSmart_SM00060,superfamily_Fibronectin type III
TSEN2	80746	genome.wustl.edu	37	3	12545080	12545080	+	Missense_Mutation	SNP	G	G	A	rs186223564	by1000genomes	TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_001145392.1	+1	reviewed	p.V210M	0.000	58	0%	64	35.9%	10	50%	benign(0)	tolerated(0.15)	neutral(0.241)	NULL
SUSD5	26032	genome.wustl.edu	37	3	33195452	33195452	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_015551.1	-1	validated	p.M224I	0.995	47	0%	40	50%	0	-	benign(0.024)	deleterious(0)	neutral(0.446)	NULL
NKTR	4820	genome.wustl.edu	37	3	42672685	42672685	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_005385.3	+1	reviewed	p.V143F	1.000	208	0%	223	30.9%	7	28.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pro_isomerase,superfamily_CSA_PPIase
PTPN23	25930	genome.wustl.edu	37	3	47454419	47454419	+	Missense_Mutation	SNP	T	T	C	rs150037620	by1000genomes	TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_015466.2	+1	validated	p.L1552P	0.871	4	0.000	32	0.438	12	25%	unknown(0)	tolerated(0.11)	-	NULL
UBA7	7318	genome.wustl.edu	37	3	49845239	49845239	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_003335.2	-1	reviewed	p.R882H	1.000	43	0%	104	34.6%	126	42.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_MoeB,HMMPfam_UBA_e1_C
RBM15B	29890	genome.wustl.edu	37	3	51430210	51430210	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_013286.3	+1	validated	p.Y460	0.600	23	0%	50	42%	34	50%	-	-	-	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928
VPRBP	9730	genome.wustl.edu	37	3	51457723	51457723	+	Silent	SNP	G	G	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_014703.2	-1	validated	p.R848	1.000	64	0%	118	38.1%	12	58.3%	-	-	-	NULL
GRM2	2912	genome.wustl.edu	37	3	51749898	51749898	+	Silent	SNP	G	G	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_000839.3	+1	reviewed	p.P703	0.029	15	0%	35	40%	0	-	-	-	-	HMMPfam_7tm_3
NISCH	11188	genome.wustl.edu	37	3	52521346	52521346	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_007184.3	+1	validated	p.A613V	0.976	25	0%	54	35.2%	9	22.2%	possibly_damaging(0.8)	deleterious(0)	deleterious(0.746)	NULL
CACNA1D	776	genome.wustl.edu	37	3	53842766	53842766	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_000720.2	+1	validated	p.T1967M	1.000	13	0%	34	44.1%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SNTN	132203	genome.wustl.edu	37	3	63645470	63645470	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_001080537.1	+1	provisional	p.D72G	1.000	155	0%	158	43%	19	36.8%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_SSF47473
BBX	56987	genome.wustl.edu	37	3	107493571	107493571	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_001142568.1	+1	validated	p.R641*	1.000	99	0%	108	42.6%	6	16.6%	-	-	-	NULL
HCLS1	3059	genome.wustl.edu	37	3	121353189	121353191	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_005335.4	-1	validated	p.E256in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
MCM2	4171	genome.wustl.edu	37	3	127339622	127339622	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_004526.2	+1	reviewed	p.R783W	1.000	49	0%	45	46.7%	48	45.8%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_MCM,HMMSmart_MCM,superfamily_SSF52540
ACPP	55	genome.wustl.edu	37	3	132061395	132061395	+	Splice_Site	SNP	G	G	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_001134194.1	+1	reviewed	e6-1	1.000	323	0%	268	35.4%	0	-	-	-	-	-
ZBBX	79740	genome.wustl.edu	37	3	167068281	167068283	+	In_Frame_Del	DEL	TCT	TCT	-	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	TCT	TCT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_024687.2	-1	validated	p.E151in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_zf-B_box
PIK3CA	5290	genome.wustl.edu	37	3	178916946	178916946	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_006218.2	+1	reviewed	p.K111N	1.000	64	0%	47	31.9%	1	100%	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	superfamily_SSF54236
PIK3CA	5290	genome.wustl.edu	37	3	178952077	178952077	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_006218.2	+1	reviewed	p.N1044K	1.000	113	0%	84	29.8%	5	20%	probably_damaging(0.983)	tolerated(0.05)	deleterious(0.774)	HMMSmart_PI3Kc,superfamily_Kinase_like
YEATS2	55689	genome.wustl.edu	37	3	183508704	183508704	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	ENST00000432781	+1	known	p.R197C	0.016	35	0%	65	29.2%	6	16.6%	-	-	-	NULL
CLDN16	10686	genome.wustl.edu	37	3	190120186	190120186	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_006580.3	+1	reviewed	p.R129C	1.000	92	0%	114	40.4%	0	-	probably_damaging(0.999)	tolerated(0.16)	deleterious(0.550)	HMMPfam_PMP22_Claudin,PatternScan_CLAUDIN
TMEM175	84286	genome.wustl.edu	37	4	949246	949246	+	Silent	SNP	C	C	G	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	ENST00000505148	+1	known	p.R64G	0.087	37	0%	91	44%	27	37%	-	-	-	NULL
MXD4	10608	genome.wustl.edu	37	4	2252954	2252954	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_006454.2	-1	reviewed	p.R110H	1.000	10	0%	19	47.4%	70	27.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_HLH,superfamily_HLH_basic
SEL1L3	23231	genome.wustl.edu	37	4	25836857	25836857	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_015187.3	-1	validated	p.E274D	1.000	35	0%	55	25.5%	17	52.9%	possibly_damaging(0.765)	tolerated(0.16)	neutral(0.343)	NULL
PHOX2B	8929	genome.wustl.edu	37	4	41748145	41748145	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	ENST00000510424	-1	known	p.A148V	0.547	16	0%	21	38.1%	0	-	-	-	-	NULL
AASDH	132949	genome.wustl.edu	37	4	57211380	57211380	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_181806.2	-1	validated	p.A855	0.826	182	0%	255	34.1%	11	27.2%	-	-	-	HMMPfam_PQQ,superfamily_Quinoprotein alcohol dehydrogenase-like
LPHN3	23284	genome.wustl.edu	37	4	62758462	62758462	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_015236.4	+1	reviewed	p.T455	0.999	79	0%	96	41.7%	2	0%	-	-	-	NULL
SEPT11	55752	genome.wustl.edu	37	4	77932928	77932928	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_018243.2	+1	validated	p.A127T	1.000	93	0%	116	30.2%	13	0%	benign(0.001)	tolerated(0.25)	neutral(0.037)	HMMPfam_Septin,superfamily_SSF52540
AFF1	4299	genome.wustl.edu	37	4	87967977	87967977	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_005935.2	+1	validated	p.P90Q	0.815	45	0%	58	36.2%	1	100%	probably_damaging(0.969)	deleterious(0)	deleterious(0.856)	HMMPfam_AF-4
MANBA	4126	genome.wustl.edu	37	4	103556160	103556160	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_005908.3	-1	reviewed	p.R734C	0.000	47	0%	56	37.5%	13	46.1%	possibly_damaging(0.771)	tolerated(0.17)	neutral(0.345)	NULL
SH3RF1	57630	genome.wustl.edu	37	4	170190013	170190013	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_020870.3	-1	reviewed	p.G117	0.979	13	0%	22	40.9%	12	41.6%	-	-	-	superfamily_SH3-domain
ODZ3	55714	genome.wustl.edu	37	4	183673132	183673132	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_001080477.1	+1	provisional	p.A1270V	1.000	39	0%	41	53.7%	0	-	benign(0.142)	tolerated(0.13)	neutral(0.265)	superfamily_ConA_like_lec_gl,superfamily_SSF101898
CDH10	1008	genome.wustl.edu	37	5	24537735	24537735	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_006727.2	-1	reviewed	p.S94P	1.000	138	0%	129	41.9%	0	-	possibly_damaging(0.512)	deleterious(0.02)	deleterious(0.555)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
SPEF2	79925	genome.wustl.edu	37	5	35763777	35763777	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_024867.3	+1	validated	p.Q1258	0.995	103	0%	120	35%	3	33.3%	-	-	-	NULL
NIPBL	25836	genome.wustl.edu	37	5	36976473	36976473	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_133433.3	+1	reviewed	p.R488	1.000	76	0%	55	36.4%	3	33.3%	-	-	-	superfamily_ARM repeat
C5orf34	375444	genome.wustl.edu	37	5	43502519	43502519	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_198566.1	-1	predicted	p.L369S	0.842	100	0%	152	35.5%	2	50%	-	-	-	NULL
ZNF366	167465	genome.wustl.edu	37	5	71752353	71752353	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_152625.1	-1	provisional	p.V468M	1.000	85	0%	130	46.2%	1	0%	benign(0.33)	tolerated(0.37)	neutral(0.122)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
HMGCR	3156	genome.wustl.edu	37	5	74646666	74646668	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_000859.2	+1	reviewed	p.P279in_frame_del	1.000:0.983:0.993	-	-	-	-	-	-	-	-	-	NULL
RASA1	5921	genome.wustl.edu	37	5	86564866	86564866	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_022650.1	+1	reviewed	p.M1T	0.001	213	0%	192	36.5%	0	-	benign(0.008)	deleterious(0)	neutral(0.445)	NULL
MCC	4163	genome.wustl.edu	37	5	112384918	112384918	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_001085377.1	-1	reviewed	p.R843W	1.000	15	0%	32	46.9%	11	54.5%	possibly_damaging(0.827)	tolerated(0.11)	deleterious(0.586)	NULL
HSPA4	3308	genome.wustl.edu	37	5	132440003	132440003	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_002154.3	+1	validated	p.A800T	0.044	52	0%	57	31.6%	221	42.9%	benign(0)	tolerated(0.2)	neutral(0.049)	NULL
NDUFA2	4695	genome.wustl.edu	37	5	140027161	140027161	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_002488.4	-1	reviewed	p.A3V	0.991	10	0%	13	53.8%	166	35.5%	possibly_damaging(0.801)	deleterious(0.01)	deleterious(0.707)	NULL
PCDHA5	56143	genome.wustl.edu	37	5	140203361	140203361	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_018908.2	+1	reviewed	p.S667	0.573	13	0%	26	26.9%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA10	56139	genome.wustl.edu	37	5	140236991	140236991	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_018901.2	+1	reviewed	p.A453V	0.000	13	0%	25	80%	0	-	benign(0.012)	tolerated(0.6)	neutral(0.005)	superfamily_Cadherin-like
PCDHB5	26167	genome.wustl.edu	37	5	140516543	140516543	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_015669.2	+1	reviewed	p.N509	0.044	31	0%	74	36.5%	1	0%	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHGA5	56110	genome.wustl.edu	37	5	140745574	140745574	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_018918.2	+1	reviewed	p.T559	0.000	73	0%	107	50.5%	3	33.3%	-	-	-	HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like
ADRA1B	147	genome.wustl.edu	37	5	159344145	159344145	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_000679.3	+1	reviewed	p.T78M	1.000	24	0%	33	42.4%	1	0%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ODZ2	57451	genome.wustl.edu	37	5	167674569	167674569	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_001122679.1	+1	inferred	p.G2200W	1.000	54	0%	45	33.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RHS_repeat
SLIT3	6586	genome.wustl.edu	37	5	168093591	168093591	+	Silent	SNP	C	C	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_003062.2	-1	validated	p.G1480	0.999	24	0%	52	48.1%	7	0%	-	-	-	HMMSmart_SM00041
BOD1	91272	genome.wustl.edu	37	5	173040242	173040242	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_138369.2	-1	validated	p.L85P	1.000	222	0%	241	39%	20	55%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
RREB1	6239	genome.wustl.edu	37	6	7231912	7231912	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_001003699.3	+1	reviewed	p.S1194G	1.000	10	0%	15	53.3%	8	50%	possibly_damaging(0.775)	tolerated(0.06)	deleterious(0.611)	NULL
HIVEP1	3096	genome.wustl.edu	37	6	12124685	12124685	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_002114.2	+1	validated	p.E1553K	0.108	84	0%	89	36%	1	0%	benign(0)	tolerated(0.98)	-	NULL
HLA-F	3134	genome.wustl.edu	37	6	29693059	29693059	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_001098479.1	+1	reviewed	p.P288S	0.707	24	0%	51	41.2%	310	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_C1-set,HMMSmart_IGc1,superfamily_SSF48726
TAPBP	6892	genome.wustl.edu	37	6	33272871	33272871	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_003190.4	-1	reviewed	p.T255S	0.985	31	0%	56	39.3%	30	23.3%	benign(0.026)	tolerated(1)	neutral(0.001)	NULL
SRPK1	6732	genome.wustl.edu	37	6	35825086	35825086	+	Silent	SNP	G	G	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_003137.3	-1	reviewed	p.I524	0.927	200	0%	246	40.2%	16	37.5%	-	-	-	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
TRERF1	55809	genome.wustl.edu	37	6	42237131	42237131	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_033502.2	-1	reviewed	p.G66	0.991	62	0%	111	11.7%	1	0%	-	-	-	NULL
CUL7	9820	genome.wustl.edu	37	6	43017310	43017310	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_014780.4	-1	reviewed	p.S554G	0.709	63	0%	106	34%	5	20%	possibly_damaging(0.9)	deleterious(0.02)	deleterious(0.740)	NULL
KLC4	89953	genome.wustl.edu	37	6	43029183	43029183	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_201523.1	+1	validated	p.R55H	1.000	11	0%	32	40.6%	8	75%	benign(0.021)	tolerated(0.08)	neutral(0.301)	NULL
CDC5L	988	genome.wustl.edu	37	6	44413549	44413549	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_001253.2	+1	reviewed	p.R750H	0.976	148	0%	145	38.6%	53	35.8%	benign(0.004)	tolerated(0.13)	neutral(0.253)	NULL
UBE3D	90025	genome.wustl.edu	37	6	83732184	83732184	+	Silent	SNP	T	T	C	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_198920.1	-1	provisional	p.K278	0.006	53	0%	51	31.4%	2	50%	-	-	-	HMMPfam_DUF2351
GJA10	84694	genome.wustl.edu	37	6	90604244	90604244	+	Silent	SNP	C	C	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_032602.1	+1	validated	p.T19	0.982	81	0%	74	36.5%	1	0%	-	-	-	HMMPfam_Connexin
AIM1	202	genome.wustl.edu	37	6	107011704	107011704	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_001624.2	+1	validated	p.L1660	1.000	42	0%	59	42.4%	8	0%	-	-	-	HMMPfam_Ricin_B_lectin,HMMSmart_RICIN,superfamily_RicinB_like
ARMC2	84071	genome.wustl.edu	37	6	109220943	109220943	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_032131.4	+1	validated	p.D265	0.045	70	0%	70	30%	2	0%	-	-	-	superfamily_ARM-type_fold
DCBLD1	285761	genome.wustl.edu	37	6	117861857	117861857	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_173674.1	+1	provisional	p.R376	0.927	74	0%	90	23.3%	6	33.3%	-	-	-	HMMPfam_F5_F8_type_C,HMMSmart_SM00231,superfamily_Galactose-binding domain-like
ENPP3	5169	genome.wustl.edu	37	6	131995375	131995375	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_005021.3	+1	reviewed	p.L239H	1.000	46	0%	79	41.8%	2	100%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Phosphodiest,superfamily_Alkaline_phosphatase_core
ALDH8A1	64577	genome.wustl.edu	37	6	135254110	135254110	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_022568.2	-1	reviewed	p.L218P	1.000	23	0%	18	55.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Aldedh,superfamily_ALDH-like
NHSL1	57224	genome.wustl.edu	37	6	138752680	138752682	+	In_Frame_Del	DEL	AGG	AGG	-	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	AGG	AGG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_001144060.1	-1	validated	p.P934in_frame_del	0.111:0.417:0.393	-	-	-	-	-	-	-	-	-	NULL
RAET1L	154064	genome.wustl.edu	37	6	150343269	150343269	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_130900.2	-1	validated	p.C66R	0.009	199	0%	204	36.3%	5	20%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_MHC_I/II-like_Ag-recog
DNAH11	8701	genome.wustl.edu	37	7	21744219	21744219	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_003777.3	+1	reviewed	p.L2154	1.000	46	0%	63	34.9%	1	0%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
CCDC126	90693	genome.wustl.edu	37	7	23651024	23651024	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_138771.3	+1	validated	p.L30	0.987	173	0.6%	187	40.6%	7	42.8%	-	-	-	NULL
SFRP4	6424	genome.wustl.edu	37	7	37953987	37953987	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_003014.3	-1	reviewed	p.R172C	1.000	180	0%	182	36.3%	66	0%	probably_damaging(0.986)	tolerated(0.07)	deleterious(0.754)	superfamily_TIMP_like
VPS41	27072	genome.wustl.edu	37	7	38813752	38813752	+	Silent	SNP	T	T	C	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_014396.3	-1	reviewed	p.R325	0.998	123	0%	135	45.2%	4	75%	-	-	-	superfamily_WD40 repeat-like
VOPP1	81552	genome.wustl.edu	37	7	55559980	55559980	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_030796.3	-1	validated	p.G108D	0.492	17	0%	57	36.8%	33	42.4%	unknown(0)	tolerated(0.12)	-	NULL
POM121	9883	genome.wustl.edu	37	7	72397411	72397411	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_172020.1	+1	reviewed	p.T46I	0.998	362	0%	424	43.4%	7	42.8%	possibly_damaging(0.815)	tolerated(0.14)	deleterious(0.557)	NULL
IMMP2L	83943	genome.wustl.edu	37	7	110303688	110303688	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_032549.2	-1	provisional	p.E166	1.000	68	0%	77	33.8%	5	40%	-	-	-	NULL
IFRD1	3475	genome.wustl.edu	37	7	112096997	112096997	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_001007245.1	+1	validated	p.G105C	1.000	138	0%	167	40.7%	20	25%	probably_damaging(0.971)	tolerated(0.06)	deleterious(0.736)	HMMPfam_IFRD,superfamily_ARM repeat
FOXP2	93986	genome.wustl.edu	37	7	114269985	114269985	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_148898.2	+1	reviewed	p.Q199	0.894	28	0%	50	26%	0	-	-	-	-	NULL
TMEM229A	730130	genome.wustl.edu	37	7	123672783	123672783	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_001136002.1	-1	validated	p.Y92C	1.000	13	0%	21	57.1%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
POT1	25913	genome.wustl.edu	37	7	124481050	124481050	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_015450.2	-1	reviewed	p.N449S	0.995	202	0%	184	42.9%	14	64.2%	benign(0)	tolerated(0.94)	-	NULL
TRBV6-5	28602	genome.wustl.edu	37	7	142180948	142180948	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	ENST00000390368	-1	known	p.M1I	0.246	74	0%	87	42.5%	1	0%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
KEL	3792	genome.wustl.edu	37	7	142651360	142651360	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_000420.2	-1	reviewed	p.T279A	0.250	67	0%	69	47.8%	0	-	possibly_damaging(0.677)	deleterious(0.01)	deleterious(0.647)	"HMMPfam_Peptidase_M13_N,superfamily_Metalloproteases (""zincins"") catalytic domain"
SSPO	23145	genome.wustl.edu	37	7	149503140	149503140	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	ENST00000378016	+1	known	p.C2882R	1.000	20	0%	35	31.4%	0	-	-	-	-	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,superfamily_Serine proterase inhibitors
GIMAP8	155038	genome.wustl.edu	37	7	150174508	150174508	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_175571.2	+1	reviewed	p.A546	0.000	61	0%	91	35.2%	3	0%	-	-	-	HMMPfam_AIG1,superfamily_SSF52540
DPP6	1804	genome.wustl.edu	37	7	154595584	154595584	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	ENST00000377770	+1	known	p.S473N	1.000	39	0%	81	35.8%	0	-	possibly_damaging(0.575)	tolerated(0.26)	neutral(0.231)	HMMPfam_DPPIV_N,superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain
UBE3C	9690	genome.wustl.edu	37	7	157049657	157049657	+	Silent	SNP	G	G	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_014671.2	+1	validated	p.V1000	0.433	146	0%	150	36%	24	41.6%	-	-	-	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
CLU	1191	genome.wustl.edu	37	8	27462760	27462760	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_001831.2	-1	reviewed	p.T222	0.016	38	0%	52	38.5%	63	38%	-	-	-	HMMPfam_Clusterin,HMMSmart_CLb
KCNU1	157855	genome.wustl.edu	37	8	36780144	36780144	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_001031836.2	+1	validated	p.A911	1.000	136	0%	152	46.1%	0	-	-	-	-	NULL
ANK1	286	genome.wustl.edu	37	8	41552244	41552244	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_001142446.1	-1	reviewed	p.I1106V	1.000	49	0%	91	34.1%	1	100%	benign(0)	tolerated(1)	-	NULL
TRAM1	23471	genome.wustl.edu	37	8	71495485	71495485	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_014294.5	-1	reviewed	p.R322M	1.000	195	0%	205	43.9%	104	36.5%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMSmart_SM00724
LOC392232	392232	genome.wustl.edu	37	8	73157172	73157172	+	RNA	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	XR_037363.2	-1	model	NULL	0.996	93	0%	80	27.5%	0	-	-	-	-	-
ODF1	4956	genome.wustl.edu	37	8	103564084	103564084	+	Silent	SNP	C	C	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_024410.3	+1	reviewed	p.P43	0.022	97	0%	182	36.8%	0	-	-	-	-	NULL
SAMD12	401474	genome.wustl.edu	37	8	119593052	119593052	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_207506.2	-1	validated	p.G32C	1.000	88	0%	82	37.8%	0	-	probably_damaging(0.997)	deleterious(0.02)	deleterious(0.849)	NULL
KCNK9	51305	genome.wustl.edu	37	8	140630833	140630833	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_016601.2	-1	reviewed	p.A265T	0.877	18	0%	22	45.5%	0	-	benign(0)	tolerated(0.52)	neutral(0.009)	superfamily_SSF81324
TRAPPC9	83696	genome.wustl.edu	37	8	140743314	140743314	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_031466.5	-1	reviewed	p.A1244V	0.926	16	0%	31	41.9%	45	40%	benign(0.013)	tolerated(0.06)	neutral(0.323)	NULL
UBE2R2	54926	genome.wustl.edu	37	9	33886954	33886954	+	Missense_Mutation	SNP	A	A	G	rs112637167		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_017811.3	+1	reviewed	p.N85D	1.000	104	0%	121	34.7%	54	51.8%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMPfam_UQ_con,HMMSmart_SM00212,PatternScan_UBIQUITIN_CONJUGAT_1,superfamily_UBC-like
KIAA1161	57462	genome.wustl.edu	37	9	34372047	34372047	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	ENST00000297625	-1	known	p.R265C	1.000	10	0%	24	25%	2	50%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Glyco_hydro_31,superfamily_(Trans)glycosidases
ALDH1B1	219	genome.wustl.edu	37	9	38396907	38396907	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_000692.3	+1	reviewed	p.G388R	1.000	60	0%	75	41.3%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Aldedh,superfamily_ALDH-like
TRPM6	140803	genome.wustl.edu	37	9	77386635	77386635	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_017662.4	-1	reviewed	p.R1174*	1.000	146	0%	183	31.7%	0	-	-	-	-	NULL
TRPM6	140803	genome.wustl.edu	37	9	77411798	77411798	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_017662.4	-1	reviewed	p.S750	0.985	156	0%	138	30.4%	0	-	-	-	-	NULL
TDRD7	23424	genome.wustl.edu	37	9	100227188	100227188	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_014290.2	+1	validated	p.S503G	1.000	108	0%	121	38.8%	8	37.5%	benign(0.024)	tolerated(0.32)	neutral(0.025)	HMMPfam_TUDOR
TBC1D2	55357	genome.wustl.edu	37	9	100965684	100965684	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_018421.3	-1	validated	p.A719	0.511	26	0%	48	41.7%	16	56.2%	-	-	-	HMMPfam_TBC,HMMSmart_TBC,superfamily_RabGAP_TBC
PTPN3	5774	genome.wustl.edu	37	9	112172595	112172595	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_002829.3	-1	reviewed	p.G472C	0.975	63	0%	70	30%	0	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
KIAA0368	23392	genome.wustl.edu	37	9	114133913	114133913	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_001080398.1	-1	provisional	p.T1753	0.697	93	0%	130	35.4%	62	40.3%	-	-	-	superfamily_ARM repeat
PPP2R4	5524	genome.wustl.edu	37	9	131904842	131904842	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	ENST00000435305	+1	known	p.G40D	0.071	22	0%	34	23.5%	2	100%	benign(0.349)	tolerated(0.11)	neutral(0.382)	NULL
NUP214	8021	genome.wustl.edu	37	9	134051001	134051001	+	Missense_Mutation	SNP	G	G	T	rs150292060	by1000genomes	TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_005085.2	+1	reviewed	p.Q1104H	0.415	24	0%	36	30.6%	7	71.4%	probably_damaging(0.959)	deleterious(0)	deleterious(0.847)	NULL
RAPGEF1	2889	genome.wustl.edu	37	9	134514084	134514084	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_198679.1	-1	reviewed	p.E198*	1.000	82	0%	150	44%	8	37.5%	-	-	-	NULL
ANAPC2	29882	genome.wustl.edu	37	9	140076259	140076259	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_013366.3	-1	reviewed	p.G448R	1.000	14	0%	22	36.4%	23	56.5%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_Cullin
UPF2	26019	genome.wustl.edu	37	10	12006066	12006066	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_015542.2	-1	reviewed	p.T709K	1.000	64	0%	70	37.1%	6	33.3%	possibly_damaging(0.95)	deleterious(0.03)	deleterious(0.758)	HMMPfam_MIF4G,HMMSmart_SM00543,superfamily_ARM repeat
CUBN	8029	genome.wustl.edu	37	10	17153024	17153024	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_001081.3	-1	reviewed	p.C303	0.329	86	0%	105	39%	1	0%	-	-	-	HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF_CA,superfamily_EGF/Laminin
GPR158	57512	genome.wustl.edu	37	10	25839963	25839963	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_020752.2	+1	validated	p.R488H	1.000	245	0%	224	35.7%	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_7tm_3
NRP1	8829	genome.wustl.edu	37	10	33491894	33491894	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_003873.5	-1	validated	p.G597R	0.996	96	0%	132	43.2%	54	38.8%	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	NULL
CUL2	8453	genome.wustl.edu	37	10	35300793	35300793	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_003591.2	-1	provisional	p.N697Y	1.000	114	0%	130	37.7%	64	43.7%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	"HMMPfam_Cullin_Nedd8,superfamily_""Winged helix"" DNA-binding domain"
BMS1	9790	genome.wustl.edu	37	10	43316001	43316001	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_014753.3	+1	reviewed	p.R939*	0.996	32	0%	27	37%	8	25%	-	-	-	HMMPfam_DUF663
GDF2	2658	genome.wustl.edu	37	10	48416492	48416492	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_016204.1	-1	reviewed	p.R68C	1.000	26	0%	50	28%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TGFb_propeptide
ANK3	288	genome.wustl.edu	37	10	61831383	61831383	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_020987.2	-1	reviewed	p.G3086R	1.000	74	0%	71	40.8%	0	-	probably_damaging(0.998)	-	-	NULL
COL13A1	1305	genome.wustl.edu	37	10	71654307	71654307	+	Splice_Site	SNP	G	G	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_001130103.1	+1	reviewed	e10-1	1.000	105	0%	140	43.6%	0	-	-	-	-	-
PRF1	5551	genome.wustl.edu	37	10	72358323	72358323	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_001083116.1	-1	reviewed	p.R385Q	0.084	6	0.000	11	0.545	4	0%	benign(0.001)	tolerated(0.58)	neutral(0.005)	NULL
ADAMTS14	140766	genome.wustl.edu	37	10	72513635	72513635	+	Missense_Mutation	SNP	C	C	A	rs12774070	byCluster;byFrequency;by1000genomes	TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_139155.2	+1	reviewed	p.L940M	1.000	1	0.000	16	1.000	1	0%	probably_damaging(0.954)	tolerated(0.07)	deleterious(0.717)	HMMPfam_TSP_1,HMMSmart_TSP1,superfamily_TSP1
PTEN	5728	genome.wustl.edu	37	10	89692905	89692905	+	Missense_Mutation	SNP	G	G	A	rs121913292		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	ENST00000371953	+1	known	p.R130Q	1.000	155	0%	139	73.4%	31	87%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DSPc,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II
PCGF5	84333	genome.wustl.edu	37	10	92982723	92982723	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_032373.3	+1	provisional	p.T32M	1.000	125	0%	138	34.8%	51	45%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00184,HMMPfam_zf-C3HC4,superfamily_RING/U-box
ERLIN1	10613	genome.wustl.edu	37	10	101912096	101912096	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_001100626.1	-1	validated	p.P280L	1.000	96	0%	90	31.1%	25	36%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ATRNL1	26033	genome.wustl.edu	37	10	116930836	116930836	+	Silent	SNP	T	T	C	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_207303.2	+1	validated	p.D378	0.235	133	0%	125	43.2%	5	80%	-	-	-	superfamily_Galactose oxidase central domain,HMMPfam_Kelch_2
MUC5B	727897	genome.wustl.edu	37	11	1262540	1262540	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_002458.1	+1	validated	p.T1480M	0.000	26	0%	49	44.9%	1	0%	probably_damaging(0.985)	-	-	NULL
DNHD1	144132	genome.wustl.edu	37	11	6568714	6568714	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_144666.2	+1	provisional	p.A2182V	0.998	24	0%	19	36.8%	4	50%	benign(0.047)	tolerated(0.9)	neutral(0.003)	NULL
DCHS1	8642	genome.wustl.edu	37	11	6645097	6645097	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_003737.2	-1	reviewed	p.R2604*	0.985	17	0%	36	38.9%	7	0%	-	-	-	superfamily_Cadherin
OR2AG2	338755	genome.wustl.edu	37	11	6790159	6790159	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_001004490.1	-1	provisional	p.S10	0.079	101	0%	135	45.2%	0	-	-	-	-	superfamily_SSF81321
MRVI1	10335	genome.wustl.edu	37	11	10673658	10673658	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_001098579.1	-1	reviewed	p.S38P	0.998	4	0.000	15	0.400	1	0%	possibly_damaging(0.913)	deleterious(0)	deleterious(0.809)	NULL
SLC6A5	9152	genome.wustl.edu	37	11	20623176	20623176	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_004211.3	+1	reviewed	p.V169M	1.000	10	0%	36	47.2%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
OR5F1	338674	genome.wustl.edu	37	11	55761496	55761496	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_003697.1	-1	provisional	p.L202F	0.000	45	0%	35	40%	0	-	benign(0)	tolerated(1)	-	HMMPfam_7tm_1,superfamily_SSF81321
OR5T1	390155	genome.wustl.edu	37	11	56043716	56043716	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_001004745.1	+1	provisional	p.C201F	0.411	301	0%	229	38.4%	0	-	benign(0.03)	deleterious(0)	neutral(0.446)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
GPR137	56834	genome.wustl.edu	37	11	64055322	64055322	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_020155.3	+1	validated	p.S179	1.000	22	0%	39	48.7%	37	13.5%	-	-	-	NULL
SPDYC	387778	genome.wustl.edu	37	11	64939753	64939753	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_001008778.1	+1	provisional	p.A99T	0.821	22	0%	40	35%	1	100%	probably_damaging(0.999)	tolerated(0.05)	deleterious(0.836)	NULL
ANKRD13D	338692	genome.wustl.edu	37	11	67068773	67068773	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_207354.2	+1	validated	p.L331F	1.000	42	0%	97	35.1%	68	42.6%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
CABP4	57010	genome.wustl.edu	37	11	67223186	67223186	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_145200.3	+1	reviewed	p.R98*	1.000	5	0.000	6	0.833	0	-	-	-	-	superfamily_EF-hand
NUDT8	254552	genome.wustl.edu	37	11	67396482	67396482	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_181843.1	-1	provisional	p.V79L	1.000	10	0%	15	33.3%	13	53.8%	benign(0.045)	tolerated(0.19)	neutral(0.052)	HMMPfam_NUDIX,superfamily_NUDIX_hydrolase
FAM168A	23201	genome.wustl.edu	37	11	73130955	73130955	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_015159.1	-1	predicted	p.E81K	1.000	68	0%	106	37.7%	4	25%	possibly_damaging(0.895)	deleterious(0.01)	deleterious(0.758)	NULL
FAT3	120114	genome.wustl.edu	37	11	92600253	92600253	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_001008781.2	+1	validated	p.R4002H	1.000	4	0.000	11	0.455	0	-	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	superfamily_Concanavalin A-like lectins/glucanases
EXPH5	23086	genome.wustl.edu	37	11	108384916	108384916	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_015065.2	-1	validated	p.D440N	1.000	89	0%	93	33.3%	4	50%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
PAFAH1B2	5049	genome.wustl.edu	37	11	117038293	117038293	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_002572.3	+1	validated	p.D190N	1.000	32	0%	62	30.6%	24	29.1%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	HMMPfam_Lipase_GDSL,superfamily_SGNH hydrolase
MFRP	83552	genome.wustl.edu	37	11	119212624	119212625	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_031433.2	-1	reviewed	p.N486fs	1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_Frizzled cysteine-rich domain,HMMPfam_Fz,HMMSmart_SM00063
MIR100	406892	genome.wustl.edu	37	11	122022973	122022973	+	RNA	SNP	G	G	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	ENST00000385259	-1	known	NULL	0.006	121	0%	161	31.1%	0	-	-	-	-	-
CDON	50937	genome.wustl.edu	37	11	125875684	125875684	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_016952.4	-1	validated	p.P607	0.994	41	0%	58	37.9%	2	50%	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
WNT5B	81029	genome.wustl.edu	37	12	1755243	1755243	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_030775.2	+1	reviewed	p.R302H	1.000	11	0%	26	26.9%	9	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_wnt,HMMSmart_SM00097
ATF7IP	55729	genome.wustl.edu	37	12	14650859	14650859	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_018179.3	+1	validated	p.L1222R	1.000	67	0%	76	42.1%	30	33.3%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_fn3,superfamily_Fibronectin type III
ST8SIA1	6489	genome.wustl.edu	37	12	22354788	22354788	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_003034.3	-1	reviewed	p.R257C	1.000	42	0%	43	25.6%	1	0%	probably_damaging(0.991)	deleterious(0.05)	deleterious(0.789)	HMMPfam_Glyco_transf_29
KRAS	3845	genome.wustl.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	C	G	rs121913529	byCluster	TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_033360.2	-1	reviewed	p.G12A	1.000	93	0%	143	46.9%	3	66.6%	possibly_damaging(0.434)	deleterious(0.03)	deleterious(0.506)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
ADAMTS20	80070	genome.wustl.edu	37	12	43944910	43944910	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_025003.3	-1	validated	p.Y85	1.000	21	0%	44	34.1%	0	-	-	-	-	HMMPfam_Pep_M12B_propep
RAPGEF3	10411	genome.wustl.edu	37	12	48140501	48140501	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	ENST00000395358	-1	known	p.G580R	0.000	13	0%	12	58.3%	1	100%	unknown(0)	-	-	NULL
MCRS1	10445	genome.wustl.edu	37	12	49952700	49952700	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_001012300.1	-1	validated	p.R423W	0.998	35	0%	46	41.3%	100	53%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_FHA,HMMSmart_FHA,superfamily_SMAD_FHA
CSRNP2	81566	genome.wustl.edu	37	12	51461454	51461454	+	Splice_Site	SNP	A	A	C	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_030809.1	-1	provisional	e3+2	0.998	32	0%	62	33.9%	8	100%	-	-	-	-
GPR84	53831	genome.wustl.edu	37	12	54757111	54757111	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_020370.2	-1	validated	p.G175	0.998	67	0%	74	36.5%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
GLS2	27165	genome.wustl.edu	37	12	56865411	56865411	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_013267.2	-1	reviewed	p.L557	1.000	73	0%	82	34.1%	1	100%	-	-	-	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
MBD6	114785	genome.wustl.edu	37	12	57922970	57922970	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_052897.3	+1	validated	p.R989C	1.000	31	0%	67	46.3%	60	50%	unknown(0)	-	-	NULL
SRGAP1	57522	genome.wustl.edu	37	12	64536344	64536344	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_020762.2	+1	validated	p.L1050	1.000	68	0%	68	35.3%	0	-	-	-	-	NULL
PTPRB	5787	genome.wustl.edu	37	12	70986277	70986277	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_001109754.1	-1	reviewed	p.T522I	0.991	51	0%	45	26.7%	1	0%	probably_damaging(0.96)	tolerated(0.16)	neutral(0.463)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
TPH2	121278	genome.wustl.edu	37	12	72388231	72388231	+	Silent	SNP	T	T	C	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_173353.3	+1	reviewed	p.H318	0.999	166	0%	164	36.6%	0	-	-	-	-	PatternScan_BIOPTERIN_HYDROXYL,HMMPfam_Biopterin_H,superfamily_Aaa_hydroxylase
CLIP1	6249	genome.wustl.edu	37	12	122757587	122757587	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_002956.2	-1	validated	p.C1373	1.000	93	0%	165	39.4%	69	50.7%	-	-	-	NULL
ULK1	8408	genome.wustl.edu	37	12	132392048	132392048	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_003565.2	+1	validated	p.N96	0.955	11	0%	33	30.3%	8	37.5%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
EP400	57634	genome.wustl.edu	37	12	132547144	132547144	+	Silent	SNP	G	G	A	rs66689119		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_015409.3	+1	validated	p.Q2743	0.724	13	0%	37	40.5%	5	40%	-	-	-	NULL
NBEA	26960	genome.wustl.edu	37	13	36223895	36223895	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_015678.4	+1	validated	p.A2604V	1.000	90	0%	100	36%	2	50%	possibly_damaging(0.521)	deleterious(0)	deleterious(0.620)	superfamily_WD40 repeat-like
RFXAP	5994	genome.wustl.edu	37	13	37394020	37394022	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_000538.3	+1	reviewed	p.K178in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
AKAP11	11215	genome.wustl.edu	37	13	42874613	42874613	+	Silent	SNP	C	C	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_016248.2	+1	reviewed	p.T577	1.000	65	0%	79	36.7%	1	100%	-	-	-	NULL
ESD	2098	genome.wustl.edu	37	13	47365503	47365503	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_001984.1	-1	reviewed	p.Q16*	1.000	117	0%	168	32.7%	70	30%	-	-	-	HMMPfam_Esterase,superfamily_SSF53474
RB1	5925	genome.wustl.edu	37	13	48916757	48916757	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_000321.2	+1	reviewed	p.K96R	1.000	97	0%	118	37.3%	6	50%	benign(0.134)	deleterious(0.01)	neutral(0.417)	NULL
MYCBP2	23077	genome.wustl.edu	37	13	77671636	77671636	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_015057.4	-1	validated	p.R3180K	0.998	90	0%	117	35%	0	-	possibly_damaging(0.794)	tolerated(0.52)	neutral(0.306)	NULL
CDC16	8881	genome.wustl.edu	37	13	115027421	115027424	+	Splice_Site	DEL	TAAG	TAAG	-	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	TAAG	TAAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_001078645.1	+1	reviewed	e16-1	0.397:0.999:1.000:1.000	-	-	-	-	-	-	-	-	-	-
PSMB11	122706	genome.wustl.edu	37	14	23512254	23512254	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_001099780.1	+1	validated	p.A274T	0.000	12	0%	33	42.4%	1	100%	benign(0.014)	tolerated(0.17)	neutral(0.059)	NULL
LRRC16B	90668	genome.wustl.edu	37	14	24524345	24524345	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_138360.3	+1	validated	p.W177C	1.000	101	0%	135	40%	0	-	unknown(0)	deleterious(0)	-	superfamily_RNI-like
SNX6	58533	genome.wustl.edu	37	14	35036979	35036979	+	Splice_Site	SNP	T	T	C	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_152233.2	-1	reviewed	e13-2	1.000	200	0%	212	40.6%	0	-	-	-	-	-
ESR2	2100	genome.wustl.edu	37	14	64723981	64723981	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_001437.2	-1	reviewed	p.G352C	1.000	71	0%	101	37.6%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain
RCOR1	23186	genome.wustl.edu	37	14	103187678	103187678	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_015156.2	+1	validated	p.R382C	1.000	53	0%	80	46.3%	13	69.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SANT,superfamily_Homeodomain_like,HMMPfam_Myb_DNA-binding
KIF26A	26153	genome.wustl.edu	37	14	104641543	104641543	+	Silent	SNP	C	C	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_015656.1	+1	validated	p.T806	0.022	7	0.000	14	0.429	0	-	-	-	-	NULL
PACS2	23241	genome.wustl.edu	37	14	105847387	105847387	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_001100913.1	+1	validated	p.P407S	0.980	4	0.000	21	0.429	23	17.3%	probably_damaging(1)	tolerated(0.65)	deleterious(0.503)	NULL
IGHV1-2	28474	genome.wustl.edu	37	14	106452899	106452899	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	ENST00000390594	-1	known	p.C41	0.860	106	0%	129	37.2%	1	0%	-	-	-	HMMSmart_SM00406,HMMPfam_V-set,superfamily_Immunoglobulin
FAN1	22909	genome.wustl.edu	37	15	31221496	31221496	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_014967.4	+1	reviewed	p.E895K	0.000	24	0%	44	45.5%	8	12.5%	benign(0.002)	tolerated(0.09)	neutral(0.296)	HMMPfam_VRR_NUC
PRTG	283659	genome.wustl.edu	37	15	55972270	55972270	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_173814.4	-1	validated	p.A319T	1.000	43	0%	53	47.2%	0	-	benign(0.35)	deleterious(0.01)	deleterious(0.517)	superfamily_SSF48726
MYO9A	4649	genome.wustl.edu	37	15	72338513	72338513	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_006901.2	-1	validated	p.R131H	1.000	86	0%	76	38.2%	0	-	possibly_damaging(0.938)	tolerated(0.07)	deleterious(0.703)	superfamily_P-loop containing nucleoside triphosphate hydrolases
C15orf42	90381	genome.wustl.edu	37	15	90169017	90169017	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_152259.3	+1	validated	p.G1826C	0.994	15	0%	15	26.7%	9	44.4%	probably_damaging(0.998)	tolerated(0.08)	deleterious(0.774)	NULL
IDH2	3418	genome.wustl.edu	37	15	90630682	90630682	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_002168.2	-1	reviewed	p.E268D	0.998	92	0%	130	41.5%	483	33.3%	benign(0)	tolerated(0.26)	neutral(0.034)	HMMPfam_Iso_dh,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like
UNC45A	55898	genome.wustl.edu	37	15	91479661	91479661	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_018671.3	+1	validated	p.R133W	1.000	46	0%	75	38.7%	18	55.5%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	superfamily_TPR-like
IGF1R	3480	genome.wustl.edu	37	15	99467107	99467107	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_000875.3	+1	reviewed	p.G830*	1.000	57	0%	72	34.7%	3	33.3%	-	-	-	superfamily_FN_III-like
RAB11FIP3	9727	genome.wustl.edu	37	16	553005	553005	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_014700.3	+1	validated	p.Y435N	1.000	27	0%	57	49.1%	39	41%	benign(0.01)	tolerated(0.18)	neutral(0.057)	NULL
RPS2	6187	genome.wustl.edu	37	16	2012222	2012222	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_002952.3	-1	reviewed	p.P253	0.939	67	1.5%	151	35.1%	3631	40.7%	-	-	-	HMMPfam_Ribosomal_S5_C,superfamily_Ribosomal protein S5 domain 2-like
PKMYT1	9088	genome.wustl.edu	37	16	3024386	3024386	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_004203.3	-1	reviewed	p.M338V	0.998	8	0.000	11	0.545	26	50%	benign(0.004)	tolerated(0.31)	neutral(0.027)	superfamily_Kinase_like,HMMPfam_Pkinase
SLX4	84464	genome.wustl.edu	37	16	3647549	3647549	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_032444.2	-1	provisional	p.A505V	0.000	50	0%	59	52.5%	1	0%	possibly_damaging(0.61)	deleterious(0.05)	deleterious(0.557)	NULL
CREBBP	1387	genome.wustl.edu	37	16	3820640	3820640	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_004380.2	-1	reviewed	p.P937	0.224	18	0%	94	36.2%	3	0%	-	-	-	NULL
CLEC16A	23274	genome.wustl.edu	37	16	11076761	11076761	+	Silent	SNP	G	G	A	rs192627479	by1000genomes	TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_015226.2	+1	validated	p.P328	0.627	260	0%	263	41.4%	8	37.5%	-	-	-	NULL
ZNF646	9726	genome.wustl.edu	37	16	31090567	31090567	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_014699.3	+1	validated	p.E974	0.992	19	0%	20	35%	8	0%	-	-	-	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
CHD9	80205	genome.wustl.edu	37	16	53272404	53272404	+	Missense_Mutation	SNP	G	G	A	rs181647712	by1000genomes	TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_025134.4	+1	validated	p.R928H	1.000	198	0%	213	47.9%	0	-	possibly_damaging(0.579)	deleterious(0.02)	deleterious(0.582)	HMMPfam_SNF2_N,HMMSmart_DEXDc,superfamily_SSF52540
CBFB	865	genome.wustl.edu	37	16	67070625	67070625	+	Silent	SNP	A	A	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_022845.2	+1	reviewed	p.R83	0.988	94	0%	114	36%	28	57.1%	-	-	-	HMMPfam_CBF_beta,superfamily_CBF_beta
ZFHX3	463	genome.wustl.edu	37	16	72831069	72831069	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_006885.3	-1	reviewed	p.Q1838*	1.000	42	0%	68	50%	3	33.3%	-	-	-	NULL
RFWD3	55159	genome.wustl.edu	37	16	74683060	74683060	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_018124.3	-1	validated	p.C254	0.002	54	0%	73	46.6%	5	20%	-	-	-	NULL
SLC43A2	124935	genome.wustl.edu	37	17	1494633	1494633	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_152346.1	-1	provisional	p.A287	0.001	10	0%	22	45.5%	23	43.4%	-	-	-	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
LOC100288674	100288674	genome.wustl.edu	37	17	2601426	2601426	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	XM_002343499.1	+1	model	p.V296I	0.015	10	0%	38	42.1%	20	45%	-	-	-	NULL
ZZEF1	23140	genome.wustl.edu	37	17	3981220	3981220	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_015113.3	-1	validated	p.T982	0.000	30	0%	49	30.6%	2	0%	-	-	-	NULL
FBXO39	162517	genome.wustl.edu	37	17	6683921	6683921	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_153230.2	+1	validated	p.C245Y	0.686	35	0%	48	35.4%	0	-	benign(0.293)	deleterious(0.02)	deleterious(0.474)	superfamily_SSF52047
SLC35G6	643664	genome.wustl.edu	37	17	7385733	7385733	+	Missense_Mutation	SNP	G	G	A	rs71360886		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_001102614.1	+1	provisional	p.V144I	0.406	65	1.5%	106	28.3%	0	-	benign(0)	tolerated(1)	-	superfamily_SSF103481
NTN1	9423	genome.wustl.edu	37	17	9143107	9143107	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_004822.2	+1	reviewed	p.C546Y	1.000	4	0.000	20	0.250	7	42.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_TIMP_like,HMMPfam_NTR,HMMSmart_C345C
RAI1	10743	genome.wustl.edu	37	17	17699775	17699775	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_030665.3	+1	reviewed	p.C1171	0.992	8	0.000	22	0.318	6	66.6%	-	-	-	NULL
MYO15A	51168	genome.wustl.edu	37	17	18082109	18082109	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	ENST00000359910	+1	known	p.R539C	0.902	55	0%	164	15.2%	0	-	-	-	-	NULL
LOC645139	645139	genome.wustl.edu	37	17	18553810	18553810	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	XM_928169.3	+1	model	p.A141V	0.026	102	0%	108	30.6%	0	-	-	-	-	HMMPfam_PAM2
MAP2K3	5606	genome.wustl.edu	37	17	21207794	21207794	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_145109.2	+1	reviewed	p.F209V	1.000	154	0%	257	16%	56	41%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
SEZ6	124925	genome.wustl.edu	37	17	27290983	27290983	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_178860.4	-1	validated	p.I413V	0.993	25	0%	51	45.1%	0	-	benign(0.002)	tolerated(1)	-	superfamily_Complement control module/SCR domain
LRRC37B	114659	genome.wustl.edu	37	17	30348907	30348907	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_052888.2	+1	validated	p.P248S	0.001	38	0%	21	61.9%	4	75%	possibly_damaging(0.456)	tolerated(0.08)	neutral(0.450)	NULL
CCL16	6360	genome.wustl.edu	37	17	34304625	34304625	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_004590.2	-1	reviewed	p.P114S	0.000	187	0%	244	38.5%	0	-	probably_damaging(0.974)	deleterious(0)	deleterious(0.861)	superfamily_Chemokine_IL8
ORMDL3	94103	genome.wustl.edu	37	17	38080439	38080439	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_139280.1	-1	provisional	p.A6	0.002	26	0%	68	45.6%	43	30.2%	-	-	-	NULL
KRT33B	3884	genome.wustl.edu	37	17	39521751	39521751	+	Missense_Mutation	SNP	C	C	T	rs143499346	by1000genomes	TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_002279.3	-1	reviewed	p.A215T	0.998	77	0%	117	38.5%	0	-	benign(0.006)	tolerated(0.1)	neutral(0.286)	HMMPfam_Filament
PSMC3IP	29893	genome.wustl.edu	37	17	40726182	40726182	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_016556.2	-1	validated	p.G91D	0.998	32	0%	52	38.5%	15	53.3%	benign(0)	tolerated(0.67)	neutral(0.003)	HMMPfam_TBPIP
MAPT	4137	genome.wustl.edu	37	17	44101427	44101427	+	Missense_Mutation	SNP	C	C	T	rs63750424	byCluster	TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_001123066.3	+1	validated	p.R741W	0.998	24	0%	26	34.6%	2	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
WNT3	7473	genome.wustl.edu	37	17	44845833	44845833	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_030753.3	-1	reviewed	p.I307	0.077	31	0%	53	11.3%	1	0%	-	-	-	HMMPfam_wnt,HMMSmart_WNT1
OSBPL7	114881	genome.wustl.edu	37	17	45893819	45893819	+	Missense_Mutation	SNP	C	C	T	rs191850189	by1000genomes	TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_145798.2	-1	reviewed	p.A320T	0.993	39	0%	58	37.9%	2	0%	benign(0.009)	tolerated(1)	neutral(0.001)	NULL
CACNA1G	8913	genome.wustl.edu	37	17	48681531	48681531	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_018896.3	+1	validated	p.A1395	0.995	68	0%	163	41.7%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
NME1-NME2	654364	genome.wustl.edu	37	17	49247315	49247315	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_001018136.1	+1	validated	p.N197	0.998	72	0%	135	11.1%	1750	7.5%	-	-	-	HMMPfam_NDK,HMMSmart_NDK,superfamily_NDK
BRIP1	83990	genome.wustl.edu	37	17	59821816	59821816	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_032043.1	-1	reviewed	p.A745V	1.000	289	0%	294	30.6%	1	0%	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	HMMSmart_SM00491
AXIN2	8313	genome.wustl.edu	37	17	63530162	63530162	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_004655.3	-1	reviewed	p.A758V	0.009	51	0%	59	39%	6	50%	benign(0.051)	deleterious(0.04)	neutral(0.352)	NULL
UNC13D	201294	genome.wustl.edu	37	17	73829050	73829050	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_199242.2	-1	reviewed	p.S815N	1.000	15	0%	39	25.6%	6	50%	benign(0)	tolerated(1)	-	HMMPfam_Membr_traf_MHD
CCDC40	55036	genome.wustl.edu	37	17	78013916	78013916	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_017950.2	+1	validated	p.S133	0.000	21	0%	28	42.9%	7	85.7%	-	-	-	NULL
ARHGDIA	396	genome.wustl.edu	37	17	79826890	79826890	+	Silent	SNP	C	C	G	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_004309.4	-1	validated	p.L159	1.000	14	0%	36	25%	425	34.1%	-	-	-	HMMPfam_Rho_GDI,superfamily_E set domains
ANKRD12	23253	genome.wustl.edu	37	18	9208794	9208794	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_015208.3	+1	validated	p.N148	1.000	89	0%	118	10.2%	0	-	-	-	-	superfamily_Ankyrin repeat
MYO5B	4645	genome.wustl.edu	37	18	47511145	47511145	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_001080467.2	-1	reviewed	p.E297K	1.000	96	0%	124	37.1%	4	25%	benign(0.006)	tolerated(0.18)	neutral(0.056)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
STARD6	147323	genome.wustl.edu	37	18	51858145	51858145	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_139171.1	-1	provisional	p.K118E	0.991	92	0%	124	32.3%	0	-	probably_damaging(0.998)	tolerated(0.12)	deleterious(0.735)	HMMPfam_START,HMMSmart_START,superfamily_SSF55961
ATP8B1	5205	genome.wustl.edu	37	18	55315860	55315860	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_005603.4	-1	reviewed	p.R1206C	1.000	7	0.000	13	0.462	27	14.8%	probably_damaging(0.973)	deleterious(0)	deleterious(0.859)	NULL
SBNO2	22904	genome.wustl.edu	37	19	1111540	1111540	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_014963.2	-1	validated	p.Q925P	0.569	15	0%	43	41.9%	50	44%	possibly_damaging(0.538)	tolerated(0.4)	neutral(0.198)	NULL
C19orf26	255057	genome.wustl.edu	37	19	1235500	1235501	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_152769.2	-1	validated	p.D97fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
GAMT	2593	genome.wustl.edu	37	19	1399536	1399536	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_138924.1	-1	reviewed	p.D126	0.079	28	0%	61	39.3%	29	24.1%	-	-	-	superfamily_SSF53335
PTPRS	5802	genome.wustl.edu	37	19	5243987	5243987	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_002850.3	-1	reviewed	p.V499M	0.997	8	0.000	32	0.281	18	50%	possibly_damaging(0.908)	deleterious(0.01)	deleterious(0.767)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
OR1M1	125963	genome.wustl.edu	37	19	9204457	9204457	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_001004456.1	+1	provisional	p.C179	0.998	35	0%	44	45.5%	1	0%	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ZNF317	57693	genome.wustl.edu	37	19	9270942	9270942	+	Silent	SNP	G	G	A	rs145788166	by1000genomes	TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_020933.3	+1	provisional	p.P207	0.000	40	0%	43	32.6%	13	30.7%	-	-	-	superfamily_C2H2 and C2HC zinc fingers
ZNF563	147837	genome.wustl.edu	37	19	12430075	12430075	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_145276.2	-1	validated	p.C255Y	0.224	144	0%	171	31%	3	66.6%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
SUGP2	10147	genome.wustl.edu	37	19	19130026	19130026	+	Missense_Mutation	SNP	C	C	T	rs186157014	by1000genomes	TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_001017392.3	-1	reviewed	p.R581Q	1.000	48	0%	79	25.3%	18	27.7%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_Surp module (SWAP domain Pfam 01805)
ZNF536	9745	genome.wustl.edu	37	19	30936439	30936439	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_014717.1	+1	provisional	p.R657L	1.000	16	0%	32	43.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF57667
HKR1	284459	genome.wustl.edu	37	19	37854109	37854109	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_181786.2	+1	provisional	p.C471Y	0.565	62	0%	98	42.9%	25	60%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
CATSPERG	57828	genome.wustl.edu	37	19	38857898	38857898	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_021185.4	+1	validated	p.Y906D	0.689	69	0%	95	43.2%	3	66.6%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
ITPKC	80271	genome.wustl.edu	37	19	41245294	41245294	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_025194.2	+1	reviewed	p.D627	1.000	10	0%	15	40%	16	37.5%	-	-	-	HMMPfam_IPK,superfamily_SSF56104
CYP2F1	1572	genome.wustl.edu	37	19	41631419	41631419	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_000774.3	+1	reviewed	p.L392I	0.171	229	0%	333	16.2%	0	-	possibly_damaging(0.932)	tolerated(0.07)	deleterious(0.698)	HMMPfam_p450,superfamily_Cytochrome P450
CIC	23152	genome.wustl.edu	37	19	42794635	42794635	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_015125.3	+1	validated	p.R572Q	0.988	19	0%	33	51.5%	20	40%	possibly_damaging(0.772)	deleterious(0)	deleterious(0.732)	NULL
PPP1R13L	10848	genome.wustl.edu	37	19	45900258	45900258	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_001142502.1	-1	validated	p.R86Q	0.999	4	0.000	21	0.476	16	68.7%	benign(0.297)	tolerated(0.45)	neutral(0.104)	NULL
LRRC4B	94030	genome.wustl.edu	37	19	51022292	51022292	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_001080457.1	-1	provisional	p.T226	0.983	20	0%	45	37.8%	5	0%	-	-	-	HMMPfam_LRR_1,superfamily_SSF52058
ZNF808	388558	genome.wustl.edu	37	19	53058551	53058551	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_001039886.3	+1	validated	p.T794	0.000	124	0.8%	152	40.1%	1	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF548	147694	genome.wustl.edu	37	19	57909924	57909924	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_152909.3	+1	validated	p.G90D	0.000	83	0%	90	41.1%	3	66.6%	probably_damaging(0.967)	tolerated(0.19)	neutral(0.458)	NULL
C20orf141	128653	genome.wustl.edu	37	20	2796272	2796272	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_080739.2	+1	validated	p.L117I	0.000	17	0%	38	36.8%	0	-	benign(0.14)	tolerated(0.42)	neutral(0.026)	NULL
RASSF2	9770	genome.wustl.edu	37	20	4773237	4773237	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_014737.2	-1	reviewed	p.Q108H	1.000	62	0%	113	41.6%	0	-	benign(0.206)	tolerated(0.24)	neutral(0.057)	NULL
C20orf26	26074	genome.wustl.edu	37	20	20150031	20150031	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_015585.3	+1	validated	p.V438M	0.991	140	0%	160	28.7%	1	0%	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	NULL
TTI1	9675	genome.wustl.edu	37	20	36612029	36612029	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_014657.1	-1	predicted	p.H1033	0.991	18	0%	29	44.8%	43	51.1%	-	-	-	superfamily_ARM-type_fold
TGM2	7052	genome.wustl.edu	37	20	36776425	36776425	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_004613.2	-1	reviewed	p.A207T	0.000	21	4.8%	23	47.8%	31	16.1%	benign(0.231)	deleterious(0.02)	neutral(0.406)	superfamily_Cysteine proteinases
RTEL1	51750	genome.wustl.edu	37	20	62320997	62320997	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_032957.3	+1	reviewed	p.G674D	0.001	6	0.000	22	0.455	7	71.4%	probably_damaging(0.986)	tolerated(0.63)	neutral(0.438)	HMMSmart_HELICc2
URB1	9875	genome.wustl.edu	37	21	33720038	33720038	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_014825.2	-1	validated	p.P1032L	1.000	7	0.000	9	0.556	3	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SON	6651	genome.wustl.edu	37	21	34925673	34925673	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	ENST00000436227	+1	known	p.R374*	0.002	45	0%	96	37.5%	27	40.7%	benign(0.202)	tolerated(0.11)	neutral(0.291)	NULL
RNF185	91445	genome.wustl.edu	37	22	31601284	31601284	+	RNA	SNP	G	G	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NR_024209.1	+1	validated	NULL	0.000	65	0%	52	44.2%	10	60%	-	-	-	-
RBFOX2	23543	genome.wustl.edu	37	22	36164315	36164315	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_001082578.1	-1	reviewed	p.R249C	1.000	72	0%	125	36%	19	52.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928
IL2RB	3560	genome.wustl.edu	37	22	37531452	37531452	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_000878.2	-1	reviewed	p.G245D	0.000	37	0%	38	28.9%	1	0%	benign(0.051)	tolerated(0.3)	neutral(0.032)	NULL
BAIAP2L2	80115	genome.wustl.edu	37	22	38483155	38483156	+	In_Frame_Ins	INS	-	-	TCATGGGTG	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_025045.4	-1	validated	p.412in_frame_insTPM	0.001:0.006	-	-	-	-	-	-	-	-	-	superfamily_SH3-domain
MPPED1	758	genome.wustl.edu	37	22	43870813	43870813	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_001044370.1	+1	validated	p.R202W	0.999	42	0%	49	26.5%	0	-	benign(0.013)	tolerated(0.21)	neutral(0.044)	HMMPfam_Metallophos,superfamily_Metallo-dependent phosphatases
BRD1	23774	genome.wustl.edu	37	22	50217488	50217488	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_014577.1	-1	reviewed	p.E160K	1.000	35	0%	25	76%	8	37.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_EPL1
FRMPD4	9758	genome.wustl.edu	37	X	12516883	12516883	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_014728.3	+1	reviewed	p.T42	1.000	41	0%	55	14.5%	0	-	-	-	-	NULL
PPEF1	5475	genome.wustl.edu	37	X	18807278	18807278	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_006240.2	+1	reviewed	p.D318H	0.000	108	0%	124	34.7%	0	-	benign(0)	tolerated(0.17)	neutral(0.059)	HMMPfam_Metallophos,HMMSmart_SM00156,superfamily_Metallo-dependent phosphatases
PTCHD1	139411	genome.wustl.edu	37	X	23397939	23397939	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_173495.2	+1	validated	p.V195I	0.998	59	0%	43	37.2%	0	-	probably_damaging(0.994)	deleterious(0.04)	deleterious(0.801)	HMMPfam_Patched
DMD	1756	genome.wustl.edu	37	X	31697652	31697652	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_004006.2	-1	reviewed	p.R2571Q	1.000	317	0%	371	34%	3	66.6%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
FAM47A	158724	genome.wustl.edu	37	X	34149095	34149096	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_203408.3	-1	validated	p.S434fs	0.006:0.005	-	-	-	-	-	-	-	-	-	NULL
RPGR	6103	genome.wustl.edu	37	X	38129023	38129023	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_000328.2	-1	reviewed	p.P768	0.009	262	0%	246	36.6%	31	0%	-	-	-	NULL
SSX3	10214	genome.wustl.edu	37	X	48213484	48213484	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_021014.2	-1	reviewed	p.T77I	0.000	371	0%	424	33.3%	0	-	benign(0.368)	tolerated(0.24)	neutral(0.154)	HMMSmart_KRAB,superfamily_Krueppel-associated_box
SUV39H1	6839	genome.wustl.edu	37	X	48557342	48557342	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_003173.2	+1	reviewed	p.C23	1.000	55	0%	121	44.6%	4	100%	-	-	-	NULL
HDAC6	10013	genome.wustl.edu	37	X	48676794	48676794	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_006044.2	+1	reviewed	p.R721H	0.809	23	0%	29	34.5%	19	89.4%	benign(0.128)	tolerated(0.31)	neutral(0.037)	HMMPfam_Hist_deacetyl,superfamily_SSF52768
ITIH6	347365	genome.wustl.edu	37	X	54784113	54784114	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	TG	TG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_198510.2	-1	reviewed	p.T798fs	0.000:0.000	-	-	-	-	-	-	-	-	-	NULL
PCDH11X	27328	genome.wustl.edu	37	X	91132425	91132425	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_032968.3	+1	reviewed	p.V396M	1.000	184	0%	162	38.9%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
GPRASP1	9737	genome.wustl.edu	37	X	101909836	101909836	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_001099410.1	+1	reviewed	p.R332K	0.993	45	0%	38	44.7%	3	0%	benign(0.213)	tolerated(0.27)	neutral(0.055)	NULL
MUM1L1	139221	genome.wustl.edu	37	X	105450493	105450493	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	ENST00000337685	+1	known	p.D356E	0.000	48	0%	39	43.6%	0	-	benign(0.246)	tolerated(1)	neutral(0.025)	NULL
MORC4	79710	genome.wustl.edu	37	X	106185268	106185268	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_024657.4	-1	reviewed	p.Q854*	0.993	368	0%	340	31.8%	38	0%	-	-	-	NULL
ALG13	79868	genome.wustl.edu	37	X	110928195	110928195	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_018466.4	+1	reviewed	p.A83T	1.000	128	0%	123	36.6%	23	100%	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	HMMPfam_Glyco_tran_28_C,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
KLHL13	90293	genome.wustl.edu	37	X	117033093	117033093	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_033495.3	-1	reviewed	p.V582	0.459	284	0%	270	36.7%	8	0%	-	-	-	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
SLC25A5	292	genome.wustl.edu	37	X	118603727	118603727	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_001152.4	+1	reviewed	p.R72H	1.000	124	0%	137	32.8%	196	91.8%	possibly_damaging(0.845)	deleterious(0)	deleterious(0.768)	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr
DCAF12L2	340578	genome.wustl.edu	37	X	125298905	125298905	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_001013628.2	-1	reviewed	p.R335C	0.938	10	0%	10	60%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_WD40_like
ACTRT1	139741	genome.wustl.edu	37	X	127185676	127185676	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_138289.3	-1	reviewed	p.E170D	0.994	81	0%	86	31.4%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Actin,HMMSmart_ACTIN,superfamily_SSF53067
GPR112	139378	genome.wustl.edu	37	X	135429185	135429185	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_153834.3	+1	reviewed	p.T1107I	0.069	78	0%	53	26.4%	0	-	possibly_damaging(0.811)	deleterious(0.01)	deleterious(0.711)	NULL
MAGEC3	139081	genome.wustl.edu	37	X	140983288	140983288	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_138702.1	+1	reviewed	p.Q356fs	0.007	-	-	-	-	-	-	-	-	-	NULL
PDZD4	57595	genome.wustl.edu	37	X	153069915	153069915	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VZ-01A-11D-A10G-09	TCGA-BG-A0VZ-10A-02D-A117-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	74e72344-e693-4757-a05b-dadad40b1e64	914c4b1c-efa2-4782-8fd3-3b71a39d4f95	NM_032512.2	-1	provisional	p.M401I	1.000	8	0.000	17	0.353	0	-	benign(0.016)	tolerated(0.08)	neutral(0.300)	NULL
