Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
NOC2L	26155	genome.wustl.edu	37	1	887795	887795	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015658.3	-1	validated	p.K396N	1.000	39	0%	86	43%	195	41.5%	benign(0.235)	deleterious(0)	neutral(0.468)	HMMPfam_Noc2
PLEKHN1	84069	genome.wustl.edu	37	1	905738	905738	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032129.2	+1	validated	p.P89S	0.859	90	0%	108	38%	1	0%	possibly_damaging(0.513)	tolerated(0.63)	neutral(0.176)	superfamily_SSF50729
CCNL2	81669	genome.wustl.edu	37	1	1330823	1330823	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_030937.4	-1	validated	p.R182Q	1.000	280	0%	350	41.4%	81	50.6%	probably_damaging(0.976)	deleterious(0)	deleterious(0.863)	HMMSmart_SM00385,HMMPfam_Cyclin_N,superfamily_Cyclin-like
MRPL20	55052	genome.wustl.edu	37	1	1337530	1337530	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017971.3	-1	reviewed	p.F128C	0.994	77	0%	91	26.4%	180	31.6%	possibly_damaging(0.626)	tolerated(0.11)	deleterious(0.490)	NULL
CDK11A	728642	genome.wustl.edu	37	1	1650877	1650877	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024011.2	-1	reviewed	p.S82Y	1.000	490	0%	637	19.9%	10	10%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	NULL
KIAA1751	85452	genome.wustl.edu	37	1	1888104	1888104	+	Silent	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001080484.1	-1	predicted	p.A657	0.000	79	0%	138	39.9%	0	-	-	-	-	NULL
KIAA1751	85452	genome.wustl.edu	37	1	1918435	1918435	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001080484.1	-1	predicted	p.I112	0.000	24	0%	23	43.5%	1	100%	-	-	-	NULL
C1orf86	199990	genome.wustl.edu	37	1	2129535	2129535	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000378545	-1	known	p.A94	0.000	358	0%	464	45%	2	0%	-	-	-	NULL
PLCH2	9651	genome.wustl.edu	37	1	2411650	2411650	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014638.2	+1	provisional	p.D182N	0.998	57	0%	48	43.8%	3	33.3%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00054,PatternScan_EF_HAND_1,HMMPfam_efhand
ACTRT2	140625	genome.wustl.edu	37	1	2938643	2938643	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_080431.4	+1	reviewed	p.F131	0.909	47	0%	62	12.9%	0	-	-	-	-	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
CCDC27	148870	genome.wustl.edu	37	1	3683172	3683172	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152492.2	+1	validated	p.R509Q	1.000	113	0%	159	47.8%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
CEP104	9731	genome.wustl.edu	37	1	3750433	3750433	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014704.3	-1	validated	p.F551C	0.999	153	0%	208	48.6%	6	50%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	superfamily_ARM repeat
DFFB	1677	genome.wustl.edu	37	1	3782441	3782441	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004402.2	+1	reviewed	p.A103T	0.965	31	0%	45	35.6%	5	40%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	superfamily_His-Me finger endonucleases
C1orf174	339448	genome.wustl.edu	37	1	3807506	3807506	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_207356.2	-1	validated	p.S82Y	0.016	104	0%	134	54.5%	45	53.3%	possibly_damaging(0.902)	deleterious(0)	deleterious(0.801)	NULL
NPHP4	261734	genome.wustl.edu	37	1	6021860	6021860	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015102.2	-1	reviewed	p.E223K	0.959	112	0%	115	38.3%	1	100%	benign(0.418)	tolerated(0.33)	neutral(0.160)	NULL
NPHP4	261734	genome.wustl.edu	37	1	6027397	6027397	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015102.2	-1	reviewed	p.R160I	0.999	67	0%	65	12.3%	2	50%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
CHD5	26038	genome.wustl.edu	37	1	6172218	6172218	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015557.1	-1	provisional	p.A1708T	1.000	235	0%	282	49.6%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
ZBTB48	3104	genome.wustl.edu	37	1	6641284	6641284	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005341.2	+1	validated	p.K205N	0.998	25	0%	34	50%	2	50%	probably_damaging(0.978)	tolerated(0.25)	neutral(0.457)	NULL
CAMTA1	23261	genome.wustl.edu	37	1	7798196	7798196	+	Missense_Mutation	SNP	C	C	A	rs34424518		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015215.1	+1	validated	p.S1279Y	1.000	91	0%	101	54.5%	0	-	possibly_damaging(0.801)	deleterious(0)	deleterious(0.746)	NULL
ERRFI1	54206	genome.wustl.edu	37	1	8073738	8073738	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018948.3	-1	validated	p.S307	0.263	271	0%	315	44.1%	29	31%	-	-	-	NULL
SPSB1	80176	genome.wustl.edu	37	1	9416618	9416618	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_025106.3	+1	validated	p.R223Q	1.000	123	0%	168	43.5%	24	25%	benign(0.019)	deleterious(0.02)	neutral(0.384)	HMMPfam_SPRY,HMMSmart_SPRY
KIF1B	23095	genome.wustl.edu	37	1	10421883	10421883	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015074.3	+1	reviewed	p.S1389L	1.000	98	0%	123	46.3%	12	41.6%	benign(0.309)	tolerated(0.09)	neutral(0.393)	NULL
CORT	1325	genome.wustl.edu	37	1	10510278	10510278	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001302.3	+1	reviewed	p.K50E	0.000	48	0%	63	38.1%	3	66.6%	unknown(0)	deleterious(0)	-	NULL
PEX14	5195	genome.wustl.edu	37	1	10687419	10687419	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004565.2	+1	reviewed	p.R226W	1.000	107	0%	137	45.3%	40	37.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
EXOSC10	5394	genome.wustl.edu	37	1	11134347	11134347	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001001998.1	-1	validated	p.T675A	0.955	440	0%	511	38.9%	24	50%	benign(0.311)	tolerated(0.24)	neutral(0.135)	NULL
MTOR	2475	genome.wustl.edu	37	1	11190804	11190804	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004958.3	-1	reviewed	p.E1799K	1.000	216	0%	282	44.7%	122	45%	possibly_damaging(0.722)	tolerated(0.17)	neutral(0.321)	HMMPfam_FAT,superfamily_ARM-type_fold
MTOR	2475	genome.wustl.edu	37	1	11316174	11316174	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004958.3	-1	reviewed	p.I194V	1.000	68	0%	77	45.5%	29	58.6%	probably_damaging(0.973)	tolerated(0.07)	deleterious(0.734)	superfamily_ARM-type_fold
VPS13D	55187	genome.wustl.edu	37	1	12337268	12337274	+	Frame_Shift_Del	DEL	GTAGCAC	GTAGCAC	-	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	GTAGCAC	GTAGCAC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015378.2	+1	reviewed	p.S1209fs	1.000:0.001:0.960:0.951:0.905:0.839:0.052	-	-	-	-	-	-	-	-	-	NULL
VPS13D	55187	genome.wustl.edu	37	1	12414055	12414055	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015378.2	+1	reviewed	p.E3152D	0.999	235	0.9%	291	34.7%	3	66.6%	benign(0.018)	tolerated(0.06)	neutral(0.323)	NULL
VPS13D	55187	genome.wustl.edu	37	1	12439596	12439596	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000011700	+1	known	p.R2534H	0.099	127	0%	185	44.9%	5	80%	-	-	-	NULL
PRAMEF12	390999	genome.wustl.edu	37	1	12835246	12835246	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001080830.1	+1	provisional	p.R79Q	0.000	146	0%	212	11.8%	0	-	benign(0)	tolerated(1)	-	superfamily_SSF52047
PRAMEF10	343071	genome.wustl.edu	37	1	12952872	12952872	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001039361.3	-1	validated	p.R434W	0.000	63	0%	106	44.3%	0	-	benign(0.004)	deleterious(0.04)	neutral(0.349)	superfamily_SSF52047
PRAMEF7	441871	genome.wustl.edu	37	1	12978753	12978753	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001012277.1	+1	provisional	p.L287F	0.175	108	0%	173	22%	2	50%	probably_damaging(0.966)	tolerated(0.25)	neutral(0.445)	superfamily_RNI-like
FHAD1	114827	genome.wustl.edu	37	1	15687121	15687121	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_052929.1	+1	provisional	p.E940K	0.322	147	0%	226	48.2%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
FHAD1	114827	genome.wustl.edu	37	1	15707241	15707241	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_052929.1	+1	provisional	p.E1228D	0.838	79	0%	115	44.3%	2	50%	possibly_damaging(0.664)	tolerated(0.21)	neutral(0.279)	NULL
CTRC	11330	genome.wustl.edu	37	1	15767060	15767060	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007272.2	+1	reviewed	p.F68	0.012	69	0%	110	40%	0	-	-	-	-	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
CELA2B	51032	genome.wustl.edu	37	1	15813931	15813931	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015849.2	+1	reviewed	p.S264L	0.001	89	0%	94	27.7%	0	-	benign(0.025)	tolerated(0.12)	neutral(0.262)	superfamily_Pept_Ser_Cys
DNAJC16	23341	genome.wustl.edu	37	1	15873342	15873342	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015291.2	+1	provisional	p.T280	0.989	257	0%	291	22%	2	0%	-	-	-	superfamily_Thioredoxin-like
DDI2	84301	genome.wustl.edu	37	1	15976267	15976267	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032341.3	+1	provisional	p.E314D	0.998	282	0%	371	24.3%	3	33.3%	possibly_damaging(0.663)	tolerated(0.1)	deleterious(0.521)	superfamily_Acid proteases,HMMPfam_Asp_protease
PLEKHM2	23207	genome.wustl.edu	37	1	16045109	16045109	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015164.2	+1	validated	p.E152K	1.000	116	0%	117	46.2%	73	32.8%	benign(0.046)	tolerated(0.16)	neutral(0.062)	HMMPfam_RUN,HMMSmart_RUN
PLEKHM2	23207	genome.wustl.edu	37	1	16056295	16056295	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015164.2	+1	validated	p.F693L	1.000	54	0%	57	56.1%	60	43.3%	benign(0.001)	tolerated(0.75)	neutral(0.002)	NULL
PLEKHM2	23207	genome.wustl.edu	37	1	16060385	16060385	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015164.2	+1	validated	p.D1006N	1.000	19	0%	24	45.8%	106	30.1%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
TMEM82	388595	genome.wustl.edu	37	1	16074113	16074113	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001013641.1	+1	provisional	p.S340A	0.000	73	0%	103	14.6%	0	-	unknown(0)	tolerated(0.39)	-	NULL
SPEN	23013	genome.wustl.edu	37	1	16247460	16247460	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015001.2	+1	reviewed	p.I577	0.707	263	0%	373	44.8%	0	-	-	-	-	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928
CLCNKA	1187	genome.wustl.edu	37	1	16349147	16349147	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004070.3	+1	reviewed	p.F11L	0.921	111	0%	121	43%	0	-	benign(0.002)	tolerated(0.41)	neutral(0.015)	NULL
RSG1	79363	genome.wustl.edu	37	1	16560198	16560198	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000434014	-1	known	p.L31I	1.000	31	0%	52	42.3%	14	42.8%	unknown(0)	-	-	NULL
SPATA21	374955	genome.wustl.edu	37	1	16727334	16727334	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_198546.1	-1	provisional	p.A352V	0.000	106	0%	166	48.8%	0	-	benign(0.073)	deleterious(0.04)	neutral(0.354)	NULL
NBPF1	55672	genome.wustl.edu	37	1	16913590	16913590	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017940.3	-1	predicted	p.E245*	0.001	704	0.1%	927	36.8%	4	25%	-	-	-	NULL
PADI3	51702	genome.wustl.edu	37	1	17599940	17599940	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016233.2	+1	reviewed	p.L385M	1.000	55	0%	75	30.7%	0	-	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	HMMPfam_PAD,superfamily_SSF55909
ARHGEF10L	55160	genome.wustl.edu	37	1	17934453	17934453	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018125.3	+1	validated	p.R197Q	1.000	26	0%	38	44.7%	22	59%	possibly_damaging(0.886)	deleterious(0.03)	deleterious(0.711)	NULL
ARHGEF10L	55160	genome.wustl.edu	37	1	18014076	18014076	+	Silent	SNP	C	C	T	rs61749347		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018125.3	+1	validated	p.F1006	0.982	34	0%	49	49%	38	47.3%	-	-	-	superfamily_WD40 repeat-like
ACTL8	81569	genome.wustl.edu	37	1	18149830	18149830	+	Splice_Site	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000325482	+1	known	e2-2	0.000	20	0%	27	51.9%	0	-	-	-	-	-
PAX7	5081	genome.wustl.edu	37	1	18960970	18960970	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002584.2	+1	reviewed	p.L87I	1.000	45	0%	59	35.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PAX,HMMSmart_SM00351,superfamily_Homeodomain-like
IFFO2	126917	genome.wustl.edu	37	1	19244924	19244924	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001136265.1	-1	validated	p.D299N	1.000	132	0%	229	27.9%	7	42.8%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_Filament
UBR4	23352	genome.wustl.edu	37	1	19439188	19439188	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020765.2	-1	validated	p.S3877	0.110	110	0%	160	17.5%	55	21.8%	-	-	-	superfamily_ARM repeat
PLA2G2F	64600	genome.wustl.edu	37	1	20465983	20465983	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_022819.3	+1	validated	p.F21L	0.755	104	0%	117	43.6%	0	-	benign(0)	tolerated(0.17)	neutral(0.059)	NULL
PINK1	65018	genome.wustl.edu	37	1	20975577	20975577	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032409.2	+1	reviewed	p.F447	0.895	61	0%	75	49.3%	131	36.6%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
KIF17	57576	genome.wustl.edu	37	1	20998548	20998548	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020816.2	-1	validated	p.R869C	1.000	82	0%	113	47.8%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
HP1BP3	50809	genome.wustl.edu	37	1	21103120	21103120	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016287.3	-1	validated	p.E107G	1.000	564	0.2%	718	41.4%	20	60%	unknown(0)	deleterious(0)	-	NULL
EIF4G3	8672	genome.wustl.edu	37	1	21296085	21296085	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003760.3	-1	validated	p.R143I	1.000	283	0%	368	46.5%	1	100%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
NBPF3	84224	genome.wustl.edu	37	1	21807442	21807442	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032264.2	+1	validated	p.E467D	0.006	85	0%	116	18.1%	8	0%	probably_damaging(0.979)	deleterious(0.01)	deleterious(0.828)	NULL
RAP1GAP	5909	genome.wustl.edu	37	1	21939690	21939690	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001145658.1	-1	validated	p.F233L	1.000	129	0%	170	22.9%	221	20.3%	probably_damaging(0.995)	tolerated(0.24)	deleterious(0.495)	superfamily_Rap/Ran-GAP (Pfam 02145)
USP48	84196	genome.wustl.edu	37	1	22084256	22084256	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032236.5	-1	reviewed	p.P52L	0.997	320	0%	328	28%	32	28.1%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
HSPG2	3339	genome.wustl.edu	37	1	22207011	22207011	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005529.5	-1	reviewed	p.G660R	0.000	20	0%	29	20.7%	97	17.5%	-	-	-	NULL
ZBTB40	9923	genome.wustl.edu	37	1	22838267	22838267	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001083621.1	+1	validated	p.E701*	0.001	43	0%	87	44.8%	1	0%	-	-	-	NULL
ZBTB40	9923	genome.wustl.edu	37	1	22839610	22839610	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001083621.1	+1	validated	p.K885N	1.000	77	0%	81	39.5%	13	23%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
EPHB2	2048	genome.wustl.edu	37	1	23239042	23239042	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004442.6	+1	reviewed	p.F935	0.909	82	0%	119	49.6%	13	15.3%	-	-	-	HMMPfam_SAM_1,HMMSmart_SAM,superfamily_SAM_homology
KDM1A	23028	genome.wustl.edu	37	1	23381623	23381623	+	Silent	SNP	C	C	T	rs189014649	by1000genomes	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015013.3	+1	reviewed	p.F264	0.981	276	0%	420	42.1%	24	45.8%	-	-	-	HMMPfam_SWIRM
LUZP1	7798	genome.wustl.edu	37	1	23419075	23419075	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001142546.1	-1	reviewed	p.C560	0.845	67	1.5%	82	35.4%	2	50%	-	-	-	NULL
LUZP1	7798	genome.wustl.edu	37	1	23419870	23419870	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001142546.1	-1	reviewed	p.I295	0.681	615	0.3%	812	42.9%	2	100%	-	-	-	NULL
CNR2	1269	genome.wustl.edu	37	1	24201832	24201832	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001841.2	-1	reviewed	p.V92	0.881	76	0%	101	41.6%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
IL28RA	163702	genome.wustl.edu	37	1	24488088	24488088	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_170743.2	-1	reviewed	p.P152S	0.000	58	0%	82	13.4%	5	60%	benign(0.001)	deleterious(0.03)	neutral(0.364)	superfamily_Fibronectin type III
SRRM1	10250	genome.wustl.edu	37	1	24977932	24977932	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005839.3	+1	validated	p.R185Q	1.000	164	0.6%	184	30.4%	8	37.5%	unknown(0)	deleterious(0.04)	-	NULL
SRRM1	10250	genome.wustl.edu	37	1	24995940	24995940	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005839.3	+1	validated	p.R689Q	1.000	142	0%	175	12.6%	71	7%	unknown(0)	deleterious(0.03)	-	NULL
TMEM57	55219	genome.wustl.edu	37	1	25785272	25785272	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018202.4	+1	validated	p.S348I	0.991	144	0%	160	50%	5	60%	benign(0.429)	tolerated(0.35)	neutral(0.160)	HMMPfam_Macoilin
PDIK1L	149420	genome.wustl.edu	37	1	26448602	26448602	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152835.3	+1	validated	p.K187R	1.000	132	0%	156	43.6%	6	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
LIN28A	79727	genome.wustl.edu	37	1	26752893	26752893	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024674.4	+1	validated	p.R192*	1.000	88	0%	190	44.7%	0	-	-	-	-	NULL
ARID1A	8289	genome.wustl.edu	37	1	27106354	27106354	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006015.4	+1	reviewed	p.R1989*	1.000	142	0%	161	38.5%	110	48.1%	-	-	-	NULL
C1orf172	126695	genome.wustl.edu	37	1	27277948	27277948	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152365.2	-1	validated	p.K308N	1.000	32	0%	41	51.2%	107	59.8%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	NULL
MAP3K6	9064	genome.wustl.edu	37	1	27685262	27685262	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004672.3	-1	reviewed	p.E841*	1.000	67	0%	56	37.5%	16	25%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
FCN3	8547	genome.wustl.edu	37	1	27697428	27697428	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003665.2	-1	reviewed	p.F143L	0.989	88	0%	89	40.4%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Fibrinogen_C,HMMSmart_SM00186,superfamily_Fibrinogen C-terminal domain-like
STX12	23673	genome.wustl.edu	37	1	28120102	28120102	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_177424.2	+1	validated	p.E83*	1.000	411	0%	564	43.1%	3	0%	-	-	-	HMMPfam_Syntaxin,HMMSmart_SM00503,superfamily_t-snare proteins
MED18	54797	genome.wustl.edu	37	1	28661297	28661297	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001127350.1	+1	validated	p.I148S	1.000	177	0%	266	19.5%	53	30.1%	benign(0.041)	deleterious(0)	neutral(0.447)	HMMPfam_Med18
EPB41	2035	genome.wustl.edu	37	1	29391630	29391630	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_203343.2	+1	reviewed	p.R626Q	1.000	107	0%	173	14.5%	14	7.1%	probably_damaging(0.997)	tolerated(0.22)	deleterious(0.508)	HMMPfam_SAB
SRSF4	6429	genome.wustl.edu	37	1	29475058	29475058	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005626.4	-1	reviewed	p.S450L	0.994	310	0%	398	45%	142	37.3%	unknown(0)	deleterious(0.01)	-	NULL
PUM1	9698	genome.wustl.edu	37	1	31447604	31447604	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001020658.1	-1	reviewed	p.G467V	1.000	164	0%	249	38.2%	43	48.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SPOCD1	90853	genome.wustl.edu	37	1	32280738	32280738	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_144569.4	-1	provisional	p.R66Q	0.000	22	0%	32	50%	0	-	possibly_damaging(0.666)	-	-	NULL
LCK	3932	genome.wustl.edu	37	1	32751188	32751188	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001042771.1	+1	reviewed	p.E467D	0.659	59	0%	84	38.1%	6	0%	benign(0)	tolerated(0.61)	neutral(0.004)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
HDAC1	3065	genome.wustl.edu	37	1	32768273	32768273	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004964.2	+1	reviewed	p.R34Q	1.000	126	0%	186	23.7%	269	20.8%	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	HMMPfam_Hist_deacetyl,superfamily_Arginase/deacetylase
MARCKSL1	65108	genome.wustl.edu	37	1	32800510	32800510	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_023009.5	-1	validated	p.F92L	1.000	32	0%	45	11.1%	215	13.4%	possibly_damaging(0.792)	deleterious(0)	deleterious(0.742)	PatternScan_MARCKS_2
ZNF362	149076	genome.wustl.edu	37	1	33760551	33760551	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152493.2	+1	validated	p.D308N	1.000	96	0%	140	45%	107	46.7%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	superfamily_SSF57667
ZSCAN20	7579	genome.wustl.edu	37	1	33960529	33960529	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_145238.3	+1	validated	p.S862Y	0.000	46	0%	68	29.4%	0	-	benign(0.04)	tolerated(0.88)	neutral(0.003)	NULL
CSMD2	114784	genome.wustl.edu	37	1	34011654	34011654	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_052896.3	-1	validated	p.S2884L	0.000	23	0%	29	17.2%	1	0%	benign(0)	tolerated(0.4)	neutral(0.016)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CSMD2	114784	genome.wustl.edu	37	1	34083115	34083115	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_052896.3	-1	validated	p.P1937L	1.000	120	0%	151	14.6%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CSMD2	114784	genome.wustl.edu	37	1	34204790	34204790	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_052896.3	-1	validated	p.V733	1.000	55	0%	68	52.9%	0	-	-	-	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
HMGB4	127540	genome.wustl.edu	37	1	34329934	34329934	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_145205.4	+1	validated	p.K48*	1.000	154	0%	186	43%	0	-	-	-	-	HMMPfam_HMG_box,HMMSmart_HMG,superfamily_HMG-box
GJB5	2709	genome.wustl.edu	37	1	35223351	35223351	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005268.2	+1	provisional	p.S140	0.000	61	1.6%	74	27%	13	30.7%	-	-	-	NULL
DLGAP3	58512	genome.wustl.edu	37	1	35334261	35334261	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001080418.1	-1	provisional	p.E810D	1.000	21	0%	40	20%	0	-	possibly_damaging(0.791)	deleterious(0)	deleterious(0.741)	HMMPfam_GKAP
ZMYM6	9204	genome.wustl.edu	37	1	35454473	35454473	+	Missense_Mutation	SNP	C	C	A	rs61741445	by1000genomes	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007167.3	-1	validated	p.R737I	0.969	97	0%	99	48.5%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
ZMYM6	9204	genome.wustl.edu	37	1	35457963	35457963	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007167.3	-1	validated	p.K673R	0.997	294	0%	375	29.1%	5	20%	benign(0.035)	tolerated(0.54)	neutral(0.009)	NULL
ZMYM6	9204	genome.wustl.edu	37	1	35484956	35484956	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007167.3	-1	validated	p.S142	0.001	319	0.3%	473	43.8%	7	14.2%	-	-	-	HMMPfam_zf-FCS,HMMSmart_SM00746
SFPQ	6421	genome.wustl.edu	37	1	35658441	35658441	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005066.2	-1	validated	p.Q70	0.997	13	7.7%	27	40.7%	64	39%	-	-	-	NULL
TFAP2E	339488	genome.wustl.edu	37	1	36060127	36060127	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_178548.3	+1	validated	p.F393	0.997	92	0%	121	39.7%	5	100%	-	-	-	HMMPfam_TF_AP-2
CLSPN	63967	genome.wustl.edu	37	1	36208784	36208784	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_022111.2	-1	reviewed	p.E1034A	0.984	164	0%	224	11.2%	6	16.6%	probably_damaging(0.998)	tolerated(0.13)	deleterious(0.727)	NULL
CLSPN	63967	genome.wustl.edu	37	1	36226464	36226464	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_022111.2	-1	reviewed	p.T353N	0.001	139	0%	166	40.4%	3	33.3%	possibly_damaging(0.605)	deleterious(0.02)	deleterious(0.593)	NULL
EIF2C3	192669	genome.wustl.edu	37	1	36437668	36437668	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024852.2	+1	reviewed	p.R119Q	1.000	210	0%	289	15.9%	10	30%	possibly_damaging(0.812)	tolerated(0.08)	deleterious(0.605)	NULL
THRAP3	9967	genome.wustl.edu	37	1	36754830	36754830	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005119.3	+1	validated	p.R404W	0.997	121	0%	147	45.6%	6	50%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
SH3D21	79729	genome.wustl.edu	37	1	36785685	36785685	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024676.4	+1	validated	p.P120H	0.003	44	0%	44	56.8%	1	100%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
STK40	83931	genome.wustl.edu	37	1	36821017	36821017	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032017.1	-1	provisional	p.I120	0.142	115	0%	161	20.5%	69	11.5%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
CSF3R	1441	genome.wustl.edu	37	1	36939086	36939086	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_156039.2	-1	reviewed	p.A208V	0.003	52	1.9%	85	51.8%	1	0%	benign(0.028)	tolerated(1)	neutral(0.002)	HMMSmart_FN3,superfamily_FN_III-like
ZC3H12A	80149	genome.wustl.edu	37	1	37948725	37948725	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_025079.2	+1	validated	p.S438L	0.982	25	0%	28	46.4%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
EPHA10	284656	genome.wustl.edu	37	1	38228464	38228464	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001099439.1	-1	validated	p.S55I	0.998	190	0%	256	48.4%	0	-	probably_damaging(0.962)	tolerated(0.13)	deleterious(0.657)	HMMPfam_Ephrin_lbd,HMMSmart_SM00615,superfamily_Galactose-binding domain-like
YRDC	79693	genome.wustl.edu	37	1	38272786	38272786	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024640.3	-1	validated	p.N164S	1.000	146	0%	126	42.1%	19	47.3%	probably_damaging(0.983)	tolerated(0.22)	deleterious(0.471)	HMMPfam_Sua5_yciO_yrdC,superfamily_DHBP_synth_RibB-like_a/b_dom
MTF1	4520	genome.wustl.edu	37	1	38288158	38288158	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005955.2	-1	reviewed	p.P468S	1.000	138	0%	176	44.3%	10	40%	probably_damaging(0.954)	deleterious(0.01)	deleterious(0.803)	NULL
MTF1	4520	genome.wustl.edu	37	1	38323069	38323069	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005955.2	-1	reviewed	p.A88T	1.000	252	0%	348	39.9%	9	66.6%	possibly_damaging(0.708)	deleterious(0)	deleterious(0.700)	NULL
POU3F1	5453	genome.wustl.edu	37	1	38511642	38511642	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002699.3	-1	validated	p.F258	1.000	13	0%	15	40%	1	0%	-	-	-	HMMPfam_Pou,HMMSmart_POU,superfamily_Lambda_like_DNA
GJA9	81025	genome.wustl.edu	37	1	39340268	39340268	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_030772.3	-1	provisional	p.T501	0.936	98	0%	124	50%	0	-	-	-	-	NULL
RHBDL2	54933	genome.wustl.edu	37	1	39353658	39353658	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017821.3	-1	reviewed	p.F237V	1.000	182	0%	194	48.5%	1	0%	benign(0.004)	tolerated(0.27)	neutral(0.034)	HMMPfam_Rhomboid
MACF1	23499	genome.wustl.edu	37	1	39790370	39790370	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012090.3	+1	reviewed	p.K1486T	1.000	175	0%	195	35.9%	0	-	benign(0.087)	tolerated(0.09)	neutral(0.303)	HMMSmart_SM00150,superfamily_Spectrin repeat
MACF1	23499	genome.wustl.edu	37	1	39802942	39802942	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033044.2	+1	reviewed	p.K1825R	0.991	172	0%	208	19.7%	1	0%	benign(0)	-	-	NULL
MACF1	23499	genome.wustl.edu	37	1	39823443	39823443	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033044.2	+1	reviewed	p.G2381R	1.000	254	0%	310	16.8%	8	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
MACF1	23499	genome.wustl.edu	37	1	39847759	39847759	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033044.2	+1	reviewed	p.M3035V	1.000	98	0%	131	46.6%	6	0%	benign(0.003)	tolerated(0.53)	neutral(0.007)	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
KIAA0754	643314	genome.wustl.edu	37	1	39877972	39877972	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015038.1	+1	predicted	p.T679A	1.000	204	0%	318	48.4%	2	100%	unknown(0)	deleterious(0)	-	NULL
RLF	6018	genome.wustl.edu	37	1	40697313	40697313	+	Silent	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012421.3	+1	validated	p.R358	1.000	457	0%	582	40.5%	3	66.6%	-	-	-	NULL
ZNF684	127396	genome.wustl.edu	37	1	41012685	41012685	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152373.3	+1	validated	p.L230	0.000	115	0%	157	54.1%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF684	127396	genome.wustl.edu	37	1	41012977	41012977	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152373.3	+1	validated	p.S328R	0.000	133	0%	196	42.9%	2	50%	benign(0.001)	tolerated(0.49)	neutral(0.011)	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667
CTPS	1503	genome.wustl.edu	37	1	41454292	41454292	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001905.2	+1	validated	p.E155	1.000	137	0%	200	48%	22	45.4%	-	-	-	HMMPfam_CTP_synth_N,superfamily_SSF52540
CTPS	1503	genome.wustl.edu	37	1	41463117	41463117	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001905.2	+1	validated	p.T308	1.000	132	0%	203	47.8%	17	41.1%	-	-	-	superfamily_SSF52317
CTPS	1503	genome.wustl.edu	37	1	41471751	41471751	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001905.2	+1	validated	p.T427	0.992	271	0%	353	40.8%	23	39.1%	-	-	-	HMMPfam_GATase,superfamily_SSF52317
SCMH1	22955	genome.wustl.edu	37	1	41494328	41494328	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001031694.2	-1	validated	p.V595	0.006	41	0%	42	33.3%	82	37.8%	-	-	-	HMMPfam_SAM_1,HMMSmart_SM00454,superfamily_SAM/Pointed domain
HIVEP3	59269	genome.wustl.edu	37	1	42046204	42046204	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024503.3	-1	validated	p.S1422L	0.986	186	0%	182	45.1%	0	-	possibly_damaging(0.837)	tolerated(0.12)	deleterious(0.580)	NULL
CCDC30	728621	genome.wustl.edu	37	1	43032078	43032078	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001080850.2	+1	validated	p.R263*	0.978	228	0%	285	42.8%	1	100%	-	-	-	NULL
CCDC30	728621	genome.wustl.edu	37	1	43055096	43055096	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001080850.2	+1	validated	p.I442S	0.902	371	0%	356	44.9%	0	-	probably_damaging(0.989)	tolerated(0.16)	deleterious(0.499)	NULL
CCDC30	728621	genome.wustl.edu	37	1	43108165	43108165	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001080850.2	+1	validated	p.I554V	0.816	123	0%	154	14.3%	0	-	benign(0)	tolerated(0.81)	neutral(0.001)	NULL
PPIH	10465	genome.wustl.edu	37	1	43124947	43124947	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000372549	+1	known	p.F34L	0.000	381	0%	472	47.5%	2	50%	unknown(0)	deleterious(0.01)	-	NULL
LEPRE1	64175	genome.wustl.edu	37	1	43212930	43212930	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000236040	-1	known	p.R690*	0.004	33	0%	38	52.6%	12	41.6%	-	-	-	NULL
SLC2A1	6513	genome.wustl.edu	37	1	43395161	43395161	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000415851	-1	known	p.P128	0.000	11	0%	22	36.4%	3	33.3%	-	-	-	NULL
SLC2A1	6513	genome.wustl.edu	37	1	43395282	43395282	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006516.2	-1	reviewed	p.Q283	1.000	37	0%	54	37%	885	48.8%	-	-	-	HMMPfam_Sugar_tr,superfamily_MFS_gen_substrate_transporter
WDR65	149465	genome.wustl.edu	37	1	43647376	43647376	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152498.3	+1	validated	p.F110C	0.996	150	0.7%	196	40.8%	0	-	probably_damaging(1)	tolerated(0.12)	deleterious(0.760)	superfamily_WD40_like
TMEM125	128218	genome.wustl.edu	37	1	43738869	43738869	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_144626.2	+1	validated	p.S159L	0.001	19	0%	28	28.6%	43	58.1%	benign(0.007)	tolerated(0.09)	neutral(0.296)	NULL
MPL	4352	genome.wustl.edu	37	1	43805025	43805025	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005373.2	+1	reviewed	p.P159T	0.011	43	0%	58	22.4%	0	-	benign(0.428)	tolerated(0.38)	neutral(0.157)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
SZT2	23334	genome.wustl.edu	37	1	43868958	43868958	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001012961.1	+1	validated	p.T46	0.037	121	0%	203	49.3%	11	27.2%	-	-	-	NULL
PTPRF	5792	genome.wustl.edu	37	1	44044667	44044667	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000413570	+1	known	p.P258R	0.987	17	0%	25	32%	1	100%	-	-	-	NULL
IPO13	9670	genome.wustl.edu	37	1	44429985	44429985	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014652.3	+1	reviewed	p.L797M	1.000	718	0%	816	45.7%	29	34.4%	benign(0.11)	tolerated(0.31)	neutral(0.036)	superfamily_ARM-type_fold
DMAP1	55929	genome.wustl.edu	37	1	44685812	44685812	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001034023.1	+1	reviewed	p.R392Q	1.000	14	0%	18	22.2%	77	24.6%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_DMAP1
RNF220	55182	genome.wustl.edu	37	1	45110737	45110737	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018150.2	+1	validated	p.R432W	1.000	135	0%	186	19.4%	92	13%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PLK3	1263	genome.wustl.edu	37	1	45266775	45266775	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004073.2	+1	validated	p.F129S	1.000	70	0%	101	42.6%	12	16.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
PLK3	1263	genome.wustl.edu	37	1	45267602	45267602	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004073.2	+1	validated	p.K217N	1.000	243	0%	305	37%	9	55.5%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
HPDL	84842	genome.wustl.edu	37	1	45793424	45793424	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032756.2	+1	validated	p.E202K	0.983	22	0%	22	45.5%	0	-	benign(0.001)	tolerated(0.46)	neutral(0.012)	superfamily_Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
TOE1	114034	genome.wustl.edu	37	1	45808860	45808860	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_025077.3	+1	validated	p.R340Q	0.568	41	0%	74	50%	16	62.5%	possibly_damaging(0.468)	tolerated(0.52)	neutral(0.162)	HMMPfam_CAF1
TESK2	10420	genome.wustl.edu	37	1	45810730	45810730	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007170.2	-1	reviewed	p.R500W	1.000	130	0%	180	39.4%	0	-	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	NULL
MAST2	23139	genome.wustl.edu	37	1	46496399	46496399	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015112.2	+1	validated	p.R892*	1.000	20	0%	30	43.3%	7	28.5%	-	-	-	NULL
MAST2	23139	genome.wustl.edu	37	1	46501556	46501556	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015112.2	+1	validated	p.P1739S	0.013	39	0%	32	43.8%	31	54.8%	probably_damaging(0.959)	deleterious(0)	deleterious(0.847)	NULL
LRRC41	10489	genome.wustl.edu	37	1	46751281	46751281	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006369.4	-1	validated	p.F416	1.000	158	0%	228	49.1%	21	90.4%	-	-	-	NULL
NSUN4	387338	genome.wustl.edu	37	1	46806569	46806569	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_199044.2	+1	validated	p.R24I	0.929	48	0%	43	48.8%	6	83.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
FAAH	2166	genome.wustl.edu	37	1	46870819	46870819	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001441.2	+1	reviewed	p.K148R	1.000	27	0%	36	52.8%	65	1.5%	possibly_damaging(0.871)	tolerated(0.09)	deleterious(0.635)	HMMPfam_Amidase,superfamily_Amidase_sig_enz
MOB3C	148932	genome.wustl.edu	37	1	47075686	47075686	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_145279.4	-1	reviewed	p.E255	1.000	49	0%	58	17.2%	7	14.2%	-	-	-	HMMPfam_Mob1_phocein,superfamily_Mob1/phocein
KIAA0494	9813	genome.wustl.edu	37	1	47183691	47183691	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014774.2	-1	validated	p.K23N	1.000	145	0%	194	41.2%	19	57.8%	probably_damaging(0.962)	tolerated(0.33)	neutral(0.429)	NULL
STIL	6491	genome.wustl.edu	37	1	47716980	47716980	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001048166.1	-1	reviewed	p.R1232Q	0.594	346	0%	403	47.4%	6	50%	probably_damaging(0.987)	tolerated(0.18)	deleterious(0.492)	NULL
SPATA6	54558	genome.wustl.edu	37	1	48865185	48865185	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_019073.1	-1	provisional	p.Y206	0.999	593	0%	668	44%	2	50%	-	-	-	NULL
AGBL4	84871	genome.wustl.edu	37	1	49100154	49100154	+	Nonstop_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000371838	-1	known	p.*321L	0.008	174	0%	242	49.2%	0	-	-	-	-	NULL
AGBL4	84871	genome.wustl.edu	37	1	49711461	49711461	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032785.3	-1	validated	p.S120P	1.000	312	0%	343	47.8%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
FAF1	11124	genome.wustl.edu	37	1	51204597	51204597	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007051.2	-1	reviewed	p.K163N	1.000	523	0%	701	47.5%	51	50.9%	benign(0.003)	tolerated(0.3)	neutral(0.029)	superfamily_Ubiquitin-like
FAF1	11124	genome.wustl.edu	37	1	51253790	51253790	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007051.2	-1	reviewed	p.A83	0.874	231	0%	257	38.9%	39	35.8%	-	-	-	NULL
PRPF38A	84950	genome.wustl.edu	37	1	52876792	52876792	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032864.3	+1	validated	p.E140K	1.000	483	0%	576	43.2%	39	43.5%	benign(0.091)	tolerated(0.24)	neutral(0.044)	HMMPfam_PRP38
ZCCHC11	23318	genome.wustl.edu	37	1	52975360	52975360	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001009881.1	-1	validated	p.R303W	1.000	350	0%	395	39.7%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ZCCHC11	23318	genome.wustl.edu	37	1	52981697	52981697	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001009881.1	-1	validated	p.E250K	1.000	243	0%	273	41.4%	1	0%	probably_damaging(0.953)	deleterious(0)	deleterious(0.841)	NULL
ZYG11B	79699	genome.wustl.edu	37	1	53237066	53237066	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024646.2	+1	validated	p.L191V	1.000	131	0%	132	40.2%	4	50%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_ARM repeat,superfamily_RNI-like
LRP8	7804	genome.wustl.edu	37	1	53729869	53729869	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004631.3	-1	reviewed	p.R543W	0.997	97	0%	123	35.8%	3	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ldl_recept_b,HMMSmart_SM00135,superfamily_YWTD domain
LRP8	7804	genome.wustl.edu	37	1	53729954	53729954	+	Silent	SNP	A	A	G	rs180896040	by1000genomes	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004631.3	-1	reviewed	p.T514	0.123	77	0%	104	33.7%	9	55.5%	-	-	-	HMMPfam_Ldl_recept_b,HMMSmart_SM00135,superfamily_YWTD domain
LRRC42	115353	genome.wustl.edu	37	1	54433420	54433420	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_052940.3	+1	provisional	p.F365L	1.000	97	0%	156	53.2%	3	66.6%	possibly_damaging(0.791)	tolerated(0.7)	neutral(0.298)	NULL
LDLRAD1	388633	genome.wustl.edu	37	1	54477836	54477836	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001010978.2	-1	provisional	p.D107G	0.995	66	0%	98	36.7%	4	75%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_LDL receptor-like module
TMEM59	9528	genome.wustl.edu	37	1	54506447	54506447	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004872.3	-1	provisional	p.F230C	1.000	231	0%	245	48.6%	103	61.1%	possibly_damaging(0.835)	deleterious(0)	deleterious(0.763)	NULL
TMEM59	9528	genome.wustl.edu	37	1	54509084	54509084	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004872.3	-1	provisional	p.Y169D	1.000	116	0%	147	26.5%	73	41%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CYB5RL	606495	genome.wustl.edu	37	1	54645000	54645000	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001031672.2	-1	provisional	p.A189V	0.956	73	0%	91	41.8%	2	50%	possibly_damaging(0.947)	deleterious(0)	deleterious(0.835)	HMMPfam_NAD_binding_1,superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain
CYB5RL	606495	genome.wustl.edu	37	1	54656537	54656537	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001031672.2	-1	provisional	p.F77	0.681	99	0%	121	42.1%	1	0%	-	-	-	superfamily_Riboflavin synthase domain-like
PCSK9	255738	genome.wustl.edu	37	1	55509575	55509575	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_174936.2	+1	reviewed	p.S89	0.343	38	0%	59	54.2%	6	66.6%	-	-	-	superfamily_Protease propeptides/inhibitors,HMMPfam_Inhibitor_I9
USP24	23358	genome.wustl.edu	37	1	55589213	55589213	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015306.2	-1	validated	p.R1235*	0.997	120	0%	136	39.7%	5	0%	-	-	-	NULL
USP24	23358	genome.wustl.edu	37	1	55599756	55599756	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015306.2	-1	validated	p.S963Y	1.000	144	0%	174	45.4%	1	100%	benign(0.267)	deleterious(0.02)	neutral(0.411)	PatternScan_SUGAR_TRANSPORT_1
USP24	23358	genome.wustl.edu	37	1	55608719	55608719	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015306.2	-1	validated	p.I678S	1.000	228	0%	287	38.3%	4	0%	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	NULL
PRKAA2	5563	genome.wustl.edu	37	1	57169847	57169847	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006252.3	+1	validated	p.R331Q	1.000	116	0%	137	42.3%	7	42.8%	probably_damaging(0.986)	tolerated(0.09)	deleterious(0.731)	superfamily_Kinase_like
C8A	731	genome.wustl.edu	37	1	57347158	57347158	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000562.2	+1	reviewed	p.D169N	0.999	281	0%	378	44.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MYSM1	114803	genome.wustl.edu	37	1	59133517	59133517	+	Splice_Site	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001085487.1	-1	provisional	e15+2	1.000	121	0%	184	38.6%	0	-	-	-	-	-
MYSM1	114803	genome.wustl.edu	37	1	59147839	59147839	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001085487.1	-1	provisional	p.E293*	0.426	281	0%	353	42.5%	0	-	-	-	-	NULL
FGGY	55277	genome.wustl.edu	37	1	59922632	59922632	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001113411.1	+1	validated	e5-1	1.000	401	0%	477	18.4%	0	-	-	-	-	-
HOOK1	51361	genome.wustl.edu	37	1	60331642	60331642	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000371208	+1	known	p.N615D	1.000	79	0%	115	27%	1	0%	benign(0.001)	tolerated(0.3)	neutral(0.029)	HMMPfam_HOOK,superfamily_Prefoldin
L1TD1	54596	genome.wustl.edu	37	1	62672582	62672582	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_019079.4	+1	validated	p.E94D	0.001	32	0%	65	47.7%	0	-	unknown(0)	tolerated(0.46)	-	NULL
DOCK7	85440	genome.wustl.edu	37	1	62954683	62954683	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000454575	-1	known	p.*968R	0.970	342	0%	398	40.5%	5	40%	-	-	-	NULL
DOCK7	85440	genome.wustl.edu	37	1	62971389	62971389	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000454575	-1	known	p.T688A	0.889	209	0%	273	39.6%	10	50%	-	-	-	NULL
DOCK7	85440	genome.wustl.edu	37	1	63044559	63044559	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033407.2	-1	validated	p.F650L	1.000	214	0%	260	46.5%	4	75%	benign(0.182)	tolerated(0.2)	neutral(0.066)	NULL
ANGPTL3	27329	genome.wustl.edu	37	1	63064460	63064460	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014495.2	+1	reviewed	p.K197Q	1.000	329	0%	408	39.7%	0	-	probably_damaging(0.998)	tolerated(0.26)	deleterious(0.508)	NULL
ATG4C	84938	genome.wustl.edu	37	1	63300492	63300492	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032852.2	+1	reviewed	p.V353A	1.000	430	0%	597	46.2%	3	33.3%	possibly_damaging(0.748)	deleterious(0)	deleterious(0.719)	HMMPfam_Peptidase_C54
FOXD3	27022	genome.wustl.edu	37	1	63789125	63789125	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012183.2	+1	reviewed	p.P132	0.994	13	0%	21	47.6%	0	-	-	-	-	NULL
ITGB3BP	23421	genome.wustl.edu	37	1	63944460	63944460	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014288.3	-1	provisional	p.E77*	0.029	565	0%	713	41.4%	4	0%	-	-	-	HMMPfam_NRIF3
ROR1	4919	genome.wustl.edu	37	1	64605929	64605929	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005012.2	+1	validated	p.D250N	1.000	134	0%	179	41.3%	2	50%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	HMMPfam_Fz
ROR1	4919	genome.wustl.edu	37	1	64643245	64643245	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005012.2	+1	validated	p.T507	1.000	105	0%	142	50.7%	2	50%	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
CACHD1	57685	genome.wustl.edu	37	1	65145301	65145301	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020925.2	+1	validated	p.M1039V	1.000	128	0%	163	16%	21	28.5%	benign(0.044)	tolerated(0.29)	neutral(0.032)	NULL
RAVER2	55225	genome.wustl.edu	37	1	65243383	65243383	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018211.3	+1	validated	p.D132Y	1.000	245	0%	316	34.2%	6	0%	possibly_damaging(0.893)	deleterious(0)	deleterious(0.796)	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928
JAK1	3716	genome.wustl.edu	37	1	65303758	65303758	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002227.2	-1	reviewed	p.Y999	0.903	128	0%	206	47.1%	68	42.6%	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like
DNAJC6	9829	genome.wustl.edu	37	1	65871742	65871742	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014787.2	+1	validated	p.R749Q	1.000	239	0%	317	45.7%	0	-	benign(0.299)	deleterious(0.01)	deleterious(0.498)	NULL
DNAJC6	9829	genome.wustl.edu	37	1	65877064	65877064	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014787.2	+1	validated	p.V865	1.000	167	0%	241	44.4%	1	0%	-	-	-	HMMPfam_DnaJ,HMMSmart_SM00271,superfamily_Chaperone J-domain
PDE4B	5142	genome.wustl.edu	37	1	66384403	66384403	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001037341.1	+1	reviewed	p.S56P	0.999	87	0%	137	18.2%	0	-	possibly_damaging(0.861)	deleterious(0.02)	deleterious(0.716)	NULL
PDE4B	5142	genome.wustl.edu	37	1	66723153	66723153	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000371048	+1	known	p.F21V	0.014	48	0%	38	18.4%	0	-	-	-	-	NULL
DEPDC1	55635	genome.wustl.edu	37	1	68943640	68943640	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001114120.1	-1	validated	p.D710N	0.999	164	0%	194	43.8%	1	100%	benign(0.167)	tolerated(0.22)	neutral(0.057)	NULL
DEPDC1	55635	genome.wustl.edu	37	1	68944985	68944985	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001114120.1	-1	validated	p.R652*	0.998	134	0%	183	47%	7	0%	-	-	-	superfamily_Rho_GAP
LRRC7	57554	genome.wustl.edu	37	1	70504011	70504011	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020794.2	+1	validated	p.S797L	0.980	107	0%	131	39.7%	0	-	possibly_damaging(0.614)	deleterious(0)	deleterious(0.657)	NULL
LRRC40	55631	genome.wustl.edu	37	1	70611496	70611496	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017768.4	-1	validated	p.R599Q	1.000	234	0%	295	40.7%	2	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LRRC40	55631	genome.wustl.edu	37	1	70639322	70639322	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017768.4	-1	validated	p.R350*	1.000	116	0.9%	169	42%	1	0%	-	-	-	NULL
HHLA3	11147	genome.wustl.edu	37	1	70820881	70820881	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001036645.1	+1	validated	p.E83K	0.001	78	0%	101	12.9%	5	0%	benign(0.352)	-	-	NULL
CTH	1491	genome.wustl.edu	37	1	70883708	70883708	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001902.4	+1	reviewed	p.V113	0.991	375	0%	512	25.4%	2	100%	-	-	-	HMMPfam_Cys_Met_Meta_PP,superfamily_PLP-dependent transferases
CTH	1491	genome.wustl.edu	37	1	70887295	70887295	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001902.4	+1	reviewed	p.K131N	1.000	394	0%	479	41.5%	1	100%	benign(0.022)	tolerated(0.15)	neutral(0.242)	HMMPfam_Cys_Met_Meta_PP,superfamily_PLP-dependent transferases
PTGER3	5733	genome.wustl.edu	37	1	71439993	71439993	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001126044.1	-1	reviewed	p.D386N	0.985	224	0%	312	47.4%	1	0%	benign(0.189)	deleterious(0)	neutral(0.462)	NULL
C1orf173	127254	genome.wustl.edu	37	1	75086555	75086555	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001002912.4	-1	validated	p.A288V	0.017	279	0%	340	36.8%	0	-	benign(0.003)	tolerated(0.46)	neutral(0.012)	NULL
C1orf173	127254	genome.wustl.edu	37	1	75102074	75102074	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001002912.4	-1	validated	p.R165*	0.998	283	0%	344	41.9%	2	0%	-	-	-	NULL
SLC44A5	204962	genome.wustl.edu	37	1	75684297	75684297	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152697.4	-1	validated	p.N469	1.000	154	0%	204	44.1%	0	-	-	-	-	HMMPfam_DUF580
ACADM	34	genome.wustl.edu	37	1	76215151	76215151	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001127328.1	+1	reviewed	p.F256	1.000	382	0.8%	457	42.5%	4	25%	-	-	-	superfamily_Acyl-CoA dehydrogenase NM domain-like
MSH4	4438	genome.wustl.edu	37	1	76333219	76333219	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002440.2	+1	validated	p.K417N	1.000	333	0%	387	49.6%	0	-	benign(0.188)	tolerated(0.2)	neutral(0.067)	HMMPfam_MutS_III,HMMSmart_MUTSd,superfamily_DNA_repair_MutS_domIII
MSH4	4438	genome.wustl.edu	37	1	76363701	76363701	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002440.2	+1	validated	p.R822I	0.988	204	0%	228	41.2%	0	-	benign(0.089)	tolerated(0.18)	neutral(0.062)	HMMPfam_MutS_V,HMMSmart_MUTSac,superfamily_SSF52540
AK5	26289	genome.wustl.edu	37	1	77987619	77987619	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_174858.1	+1	reviewed	p.F473	0.970	93	0%	118	37.3%	0	-	-	-	-	HMMPfam_ADK,superfamily_P-loop containing nucleoside triphosphate hydrolases
USP33	23032	genome.wustl.edu	37	1	78181526	78181526	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015017.3	-1	validated	p.N680S	1.000	188	0%	286	45.1%	11	36.3%	benign(0.333)	deleterious(0.03)	deleterious(0.469)	HMMPfam_UCH,superfamily_Cysteine proteinases
FAM73A	374986	genome.wustl.edu	37	1	78325057	78325057	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_198549.2	+1	predicted	p.R392*	1.000	264	0%	315	45.7%	3	0%	-	-	-	HMMPfam_DUF2217
PTGFR	5737	genome.wustl.edu	37	1	79002354	79002354	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000959.3	+1	reviewed	p.E354D	0.929	56	0%	52	48.1%	0	-	benign(0)	tolerated(0.1)	neutral(0.286)	NULL
LPHN2	23266	genome.wustl.edu	37	1	82408765	82408765	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012302.2	+1	reviewed	p.I170M	1.000	182	0%	226	43.8%	1	100%	possibly_damaging(0.791)	deleterious(0)	deleterious(0.741)	HMMPfam_OLF,HMMSmart_SM00284
TTLL7	79739	genome.wustl.edu	37	1	84377031	84377031	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024686.4	-1	validated	p.P535S	1.000	333	0%	416	45.9%	0	-	probably_damaging(1)	tolerated(0.2)	deleterious(0.549)	NULL
PRKACB	5567	genome.wustl.edu	37	1	84668410	84668410	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_182948.2	+1	reviewed	p.I276	1.000	252	0%	321	42.7%	2	0%	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
SSX2IP	117178	genome.wustl.edu	37	1	85128057	85128057	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014021.3	-1	reviewed	p.N251H	1.000	275	0%	362	44.5%	1	100%	benign(0.021)	tolerated(0.41)	neutral(0.016)	NULL
MCOLN3	55283	genome.wustl.edu	37	1	85510837	85510837	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018298.9	-1	validated	p.K69N	1.000	412	0%	505	43.4%	0	-	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	NULL
SYDE2	84144	genome.wustl.edu	37	1	85648224	85648224	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032184.1	-1	validated	p.D701Y	1.000	98	0%	124	45.2%	0	-	probably_damaging(0.965)	deleterious(0)	deleterious(0.851)	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
SYDE2	84144	genome.wustl.edu	37	1	85666050	85666050	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032184.1	-1	validated	p.R210	0.004	45	0%	64	28.1%	0	-	-	-	-	NULL
COL24A1	255631	genome.wustl.edu	37	1	86196369	86196369	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152890.5	-1	validated	p.D1669Y	1.000	255	0%	391	41.2%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMSmart_SM00038
COL24A1	255631	genome.wustl.edu	37	1	86252114	86252114	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152890.5	-1	validated	p.L1328I	0.986	135	0%	144	46.5%	0	-	benign(0.214)	tolerated(0.45)	neutral(0.033)	HMMPfam_Collagen
COL24A1	255631	genome.wustl.edu	37	1	86435930	86435930	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152890.5	-1	validated	p.F815V	0.999	179	0%	200	42%	0	-	benign(0.001)	tolerated(0.62)	neutral(0.004)	HMMPfam_Collagen
ODF2L	57489	genome.wustl.edu	37	1	86826115	86826115	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020729.2	-1	validated	p.K387N	1.000	372	0%	448	42.6%	6	66.6%	possibly_damaging(0.753)	deleterious(0)	deleterious(0.721)	superfamily_tRNA-binding arm
CLCA2	9635	genome.wustl.edu	37	1	86904648	86904648	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006536.5	+1	reviewed	p.F354	0.123	146	0%	188	42.6%	0	-	-	-	-	HMMPfam_VWA,HMMSmart_VWA,superfamily_SSF53300
CLCA2	9635	genome.wustl.edu	37	1	86909549	86909549	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006536.5	+1	reviewed	p.D523G	0.906	164	0%	227	44.1%	0	-	benign(0)	tolerated(0.07)	neutral(0.319)	HMMPfam_DUF1973
CLCA4	22802	genome.wustl.edu	37	1	87031050	87031050	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012128.3	+1	reviewed	p.K217	0.032	169	0%	213	43.2%	0	-	-	-	-	HMMPfam_CLCA_N
CLCA4	22802	genome.wustl.edu	37	1	87031518	87031518	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012128.3	+1	reviewed	p.Q257K	0.000	147	0%	136	39%	0	-	benign(0)	tolerated(1)	-	HMMPfam_CLCA_N
PKN2	5586	genome.wustl.edu	37	1	89236113	89236113	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006256.2	+1	validated	p.L195I	1.000	199	0%	284	44.4%	6	33.3%	benign(0.082)	tolerated(0.51)	neutral(0.015)	HMMPfam_HR1,HMMSmart_Hr1,superfamily_PKN_effector
PKN2	5586	genome.wustl.edu	37	1	89271605	89271605	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006256.2	+1	validated	p.L570I	1.000	186	0%	220	46.4%	12	50%	benign(0.083)	tolerated(0.27)	neutral(0.040)	NULL
PKN2	5586	genome.wustl.edu	37	1	89273107	89273107	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006256.2	+1	validated	p.Q639K	0.001	212	0%	248	27%	2	50%	benign(0.001)	tolerated(0.93)	-	superfamily_Kinase_like
GBP1	2633	genome.wustl.edu	37	1	89523853	89523853	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002053.2	-1	validated	p.K232N	0.601	168	0%	171	34.5%	2	0%	benign(0.024)	tolerated(0.33)	neutral(0.025)	HMMPfam_GBP,superfamily_P-loop containing nucleoside triphosphate hydrolases
GBP4	115361	genome.wustl.edu	37	1	89662986	89662986	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_052941.4	-1	validated	p.G14	0.008	151	0%	147	42.9%	3	0%	-	-	-	NULL
GBP6	163351	genome.wustl.edu	37	1	89843995	89843995	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_198460.2	+1	validated	p.E150*	0.990	166	0%	212	42%	0	-	-	-	-	HMMPfam_GBP,superfamily_P-loop containing nucleoside triphosphate hydrolases
LRRC8C	84230	genome.wustl.edu	37	1	90178739	90178739	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032270.4	+1	validated	p.E204*	1.000	86	0%	101	46.5%	1	100%	-	-	-	NULL
LRRC8C	84230	genome.wustl.edu	37	1	90179077	90179077	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032270.4	+1	validated	p.F316L	1.000	93	0%	121	23.1%	0	-	benign(0.255)	tolerated(0.4)	neutral(0.042)	NULL
ZNF326	284695	genome.wustl.edu	37	1	90473240	90473240	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_182976.2	+1	validated	p.E182D	1.000	136	0%	156	15.4%	15	6.6%	benign(0.017)	tolerated(0.12)	neutral(0.261)	NULL
HFM1	164045	genome.wustl.edu	37	1	91844691	91844691	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001017975.3	-1	validated	p.E363*	1.000	309	0%	339	40.4%	0	-	-	-	-	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
CDC7	8317	genome.wustl.edu	37	1	91985723	91985723	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001134419.1	+1	reviewed	p.S406Y	1.000	480	0%	569	42.7%	1	0%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
LOC646817	646817	genome.wustl.edu	37	1	92540513	92540513	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_929774.4	-1	model	p.F162	1.000	68	0%	59	30.5%	0	-	-	-	-	HMMPfam_NAP
KIAA1107	23285	genome.wustl.edu	37	1	92647704	92647704	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015237.2	+1	validated	p.F1050L	0.017	107	0%	140	45%	0	-	benign(0.232)	tolerated(0.08)	neutral(0.323)	NULL
RPL5	6125	genome.wustl.edu	37	1	93300390	93300390	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000969.3	+1	reviewed	p.E82K	1.000	110	0%	168	48.2%	2222	40.8%	benign(0.001)	deleterious(0)	neutral(0.445)	HMMPfam_Ribosomal_L18p,superfamily_Translational machinery components
RPL5	6125	genome.wustl.edu	37	1	93303151	93303151	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000969.3	+1	reviewed	p.Q222	1.000	31	0%	38	36.8%	555	39.8%	-	-	-	superfamily_Translational machinery components
FAM69A	388650	genome.wustl.edu	37	1	93309242	93309242	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001006605.3	-1	reviewed	p.R329C	1.000	134	0%	151	50.3%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
MTF2	22823	genome.wustl.edu	37	1	93594884	93594884	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007358.3	+1	validated	p.R347*	1.000	262	0%	304	42.4%	4	0%	-	-	-	NULL
TMED5	50999	genome.wustl.edu	37	1	93621917	93621917	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016040.4	-1	validated	p.E137D	0.993	562	0.2%	737	44.6%	11	36.3%	benign(0.002)	tolerated(0.59)	neutral(0.004)	HMMPfam_EMP24_GP25L,superfamily_SSF101576
CCDC18	343099	genome.wustl.edu	37	1	93652026	93652026	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_206886.2	+1	validated	p.S261Y	0.973	154	0%	185	48.1%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
FNBP1L	54874	genome.wustl.edu	37	1	93965072	93965072	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000271234	+1	known	p.F24L	1.000	203	0%	266	45.9%	20	40%	benign(0.384)	tolerated(0.53)	neutral(0.130)	HMMPfam_FCH,HMMSmart_SM00055
FNBP1L	54874	genome.wustl.edu	37	1	94012494	94012494	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000271234	+1	known	p.N458S	1.000	177	0%	209	45%	37	59.4%	benign(0)	tolerated(0.1)	neutral(0.286)	NULL
DNTTIP2	30836	genome.wustl.edu	37	1	94335364	94335364	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000436063	-1	known	p.I778	0.237	208	0%	271	51.7%	3	33.3%	-	-	-	NULL
DNTTIP2	30836	genome.wustl.edu	37	1	94335482	94335482	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000436063	-1	known	p.T739I	0.367	371	0%	507	43.2%	10	50%	-	-	-	NULL
DNTTIP2	30836	genome.wustl.edu	37	1	94342675	94342675	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014597.3	-1	provisional	p.R272	0.003	171	0%	187	15%	1	0%	-	-	-	NULL
ABCA4	24	genome.wustl.edu	37	1	94466624	94466624	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000350.2	-1	reviewed	p.R2107H	1.000	90	0%	117	39.3%	7	14.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ABC_tran,HMMSmart_AAA,superfamily_SSF52540
ABCA4	24	genome.wustl.edu	37	1	94526127	94526127	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000350.2	-1	reviewed	p.S709L	0.490	92	0%	124	38.7%	1	0%	benign(0)	tolerated(1)	-	NULL
ARHGAP29	9411	genome.wustl.edu	37	1	94650597	94650597	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004815.3	-1	validated	p.R647Q	1.000	107	0%	137	49.6%	5	20%	possibly_damaging(0.91)	deleterious(0.01)	deleterious(0.768)	HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,superfamily_Cysteine-rich domain
ABCD3	5825	genome.wustl.edu	37	1	94964360	94964360	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002858.3	+1	reviewed	p.R496C	0.922	471	0%	575	29.4%	12	33.3%	benign(0.003)	deleterious(0.02)	neutral(0.383)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
F3	2152	genome.wustl.edu	37	1	94998694	94998694	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001993.4	-1	reviewed	p.K181N	0.777	241	0%	257	10.9%	15	6.6%	benign(0.425)	tolerated(0.56)	neutral(0.145)	superfamily_FN_III-like
F3	2152	genome.wustl.edu	37	1	95001552	95001552	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001993.4	-1	reviewed	p.E127D	0.000	75	0%	103	45.6%	35	51.4%	benign(0.001)	tolerated(0.13)	neutral(0.253)	HMMPfam_Tissue_fac,superfamily_FN_III-like
PTBP2	58155	genome.wustl.edu	37	1	97216993	97216993	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021190.2	+1	reviewed	p.E18K	1.000	161	0%	187	42.8%	6	16.6%	benign(0.077)	deleterious(0)	neutral(0.450)	NULL
DPYD	1806	genome.wustl.edu	37	1	97547935	97547935	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000110.3	-1	reviewed	p.C953Y	1.000	281	0%	386	47.2%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Fer4,superfamily_SSF54862
DPYD	1806	genome.wustl.edu	37	1	98186463	98186463	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000306031	-1	known	p.S168F	0.187	211	0%	261	44.8%	0	-	benign(0.004)	deleterious(0.02)	neutral(0.383)	NULL
DPYD	1806	genome.wustl.edu	37	1	98205986	98205986	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000110.3	-1	reviewed	p.L95I	1.000	419	0%	550	14.9%	0	-	benign(0.056)	tolerated(1)	neutral(0.004)	superfamily_Helical_ferredxn
AGL	178	genome.wustl.edu	37	1	100350259	100350259	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000028.2	+1	reviewed	p.S894F	1.000	117	0%	144	41.7%	2	0%	benign(0)	tolerated(0.22)	neutral(0.042)	NULL
SLC35A3	23443	genome.wustl.edu	37	1	100477037	100477037	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012243.1	+1	provisional	p.E194D	1.000	204	0%	225	44%	1	0%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMPfam_Nuc_sug_transp
HIAT1	64645	genome.wustl.edu	37	1	100546117	100546117	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033055.2	+1	validated	p.G390*	1.000	231	0%	258	39.9%	22	27.2%	-	-	-	superfamily_MFS_gen_substrate_transporter
DBT	1629	genome.wustl.edu	37	1	100681611	100681611	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001918.2	-1	reviewed	p.D234Y	0.982	767	0%	878	41.7%	4	25%	benign(0.108)	deleterious(0.02)	neutral(0.392)	NULL
CDC14A	8556	genome.wustl.edu	37	1	100963727	100963727	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033312.2	+1	reviewed	p.N462S	0.990	153	0%	174	38.5%	7	42.8%	benign(0)	tolerated(0.81)	neutral(0.001)	NULL
SLC30A7	148867	genome.wustl.edu	37	1	101427403	101427403	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001144884.1	+1	validated	p.E288*	1.000	410	0%	455	45.3%	3	0%	-	-	-	HMMPfam_Cation_efflux
COL11A1	1301	genome.wustl.edu	37	1	103405888	103405888	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_080629.2	-1	reviewed	p.D1139Y	1.000	74	0%	84	36.9%	1	0%	unknown(0)	deleterious(0)	-	HMMPfam_Collagen
AMY2A	279	genome.wustl.edu	37	1	104161613	104161613	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000699.2	+1	reviewed	p.S132R	1.000	940	0.2%	1377	7.8%	0	-	probably_damaging(0.984)	deleterious(0)	deleterious(0.875)	HMMPfam_Alpha-amylase,HMMSmart_Aamy,superfamily_Glyco_hydro_cat
VAV3	10451	genome.wustl.edu	37	1	108315437	108315437	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006113.4	-1	reviewed	p.L159F	0.993	515	0%	650	36.9%	0	-	probably_damaging(0.989)	deleterious(0.05)	deleterious(0.785)	superfamily_Calponin-homology domain CH-domain
PRPF38B	55119	genome.wustl.edu	37	1	109238367	109238367	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018061.2	+1	validated	p.A107V	1.000	314	0%	442	43.9%	39	64.1%	possibly_damaging(0.853)	deleterious(0.03)	deleterious(0.693)	HMMPfam_PRP38
PRPF38B	55119	genome.wustl.edu	37	1	109238743	109238743	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018061.2	+1	validated	p.R142*	1.000	323	0.3%	445	45.2%	15	13.3%	-	-	-	HMMPfam_PRP38
PRPF38B	55119	genome.wustl.edu	37	1	109242028	109242028	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018061.2	+1	validated	p.R343C	1.000	60	0%	94	48.9%	33	39.3%	unknown(0)	deleterious(0.01)	-	NULL
PRPF38B	55119	genome.wustl.edu	37	1	109242415	109242415	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018061.2	+1	validated	p.R472*	1.000	139	0%	165	47.9%	23	21.7%	-	-	-	NULL
FNDC7	163479	genome.wustl.edu	37	1	109260543	109260543	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001144937.1	+1	provisional	p.S76F	1.000	95	0%	124	49.2%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
FNDC7	163479	genome.wustl.edu	37	1	109280126	109280126	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001144937.1	+1	provisional	p.S717Y	1.000	440	0%	534	46.1%	0	-	probably_damaging(0.999)	deleterious(0.05)	deleterious(0.836)	NULL
CELSR2	1952	genome.wustl.edu	37	1	109795639	109795639	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001408.2	+1	reviewed	p.A980T	0.998	49	0%	54	44.4%	31	45.1%	benign(0.299)	tolerated(1)	neutral(0.092)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
ATXN7L2	127002	genome.wustl.edu	37	1	110030321	110030321	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_153340.4	+1	validated	p.E199K	0.025	88	0%	106	12.3%	1	0%	possibly_damaging(0.643)	tolerated(0.75)	neutral(0.227)	NULL
GNAI3	2773	genome.wustl.edu	37	1	110125088	110125088	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006496.2	+1	validated	p.Q164P	1.000	173	0%	218	39.9%	112	53.5%	benign(0.002)	tolerated(0.1)	neutral(0.286)	HMMPfam_G-alpha,superfamily_Transducin (alpha subunit) insertion domain,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases
GNAT2	2780	genome.wustl.edu	37	1	110155462	110155462	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005272.3	-1	reviewed	p.E11*	1.000	444	0%	604	41.7%	0	-	-	-	-	HMMPfam_G-alpha,superfamily_P-loop containing nucleoside triphosphate hydrolases
GSTM3	2947	genome.wustl.edu	37	1	110280787	110280787	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000849.4	-1	reviewed	p.R100*	0.982	365	0.3%	508	44.5%	44	6.8%	-	-	-	superfamily_Glutathione S-transferase (GST) C-terminal domain
AHCYL1	10768	genome.wustl.edu	37	1	110559064	110559064	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006621.4	+1	validated	p.R294Q	1.000	222	0%	263	41.4%	170	44.7%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_AdoHcyase,HMMPfam_AdoHcyase_NAD,superfamily_NAD(P)-binding Rossmann-fold domains,superfamily_Formate/glycerate dehydrogenase catalytic domain-like
AHCYL1	10768	genome.wustl.edu	37	1	110561689	110561689	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006621.4	+1	validated	p.L445W	1.000	125	0%	187	46%	383	46.7%	probably_damaging(0.975)	deleterious(0)	deleterious(0.861)	HMMPfam_AdoHcyase,HMMPfam_AdoHcyase_NAD,superfamily_NAD(P)-binding Rossmann-fold domains,superfamily_Formate/glycerate dehydrogenase catalytic domain-like
FAM40A	85369	genome.wustl.edu	37	1	110592136	110592136	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033088.2	+1	validated	p.K615E	1.000	156	0%	189	43.4%	35	62.8%	possibly_damaging(0.892)	deleterious(0)	deleterious(0.796)	NULL
KCNC4	3749	genome.wustl.edu	37	1	110766332	110766332	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004978.3	+1	reviewed	p.F475	0.995	36	0%	70	47.1%	16	62.5%	-	-	-	superfamily_Voltage-gated potassium channels
RBM15	64783	genome.wustl.edu	37	1	110883852	110883852	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_022768.4	+1	validated	p.E609K	1.000	43	0%	53	50.9%	13	38.4%	possibly_damaging(0.786)	deleterious(0.01)	deleterious(0.700)	NULL
KCNA3	3738	genome.wustl.edu	37	1	111216461	111216461	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002232.3	-1	reviewed	p.S324L	1.000	32	0%	39	23.1%	1	0%	benign(0.001)	tolerated(0.21)	neutral(0.044)	HMMPfam_Ion_trans,superfamily_SSF81324
KCNA3	3738	genome.wustl.edu	37	1	111217087	111217087	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002232.3	-1	reviewed	p.F115	1.000	22	0%	16	62.5%	0	-	-	-	-	HMMSmart_BTB,HMMPfam_K_tetra,superfamily_BTB/POZ_fold
CD53	963	genome.wustl.edu	37	1	111437623	111437623	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000560.3	+1	reviewed	p.H123	0.004	175	0%	230	43.5%	27	3.7%	-	-	-	superfamily_Tetraspanin,HMMPfam_Tetraspannin
WDR77	79084	genome.wustl.edu	37	1	111986535	111986535	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024102.2	-1	provisional	p.R191S	0.892	109	0%	125	19.2%	143	41.2%	possibly_damaging(0.886)	tolerated(0.25)	neutral(0.383)	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
DDX20	11218	genome.wustl.edu	37	1	112308660	112308660	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007204.4	+1	reviewed	p.C538	0.004	81	0%	115	40%	3	0%	-	-	-	NULL
KCND3	3752	genome.wustl.edu	37	1	112318865	112318865	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004980.3	-1	reviewed	p.L601P	1.000	227	0%	360	43.1%	1	0%	benign(0.171)	deleterious(0.04)	neutral(0.364)	NULL
MOV10	4343	genome.wustl.edu	37	1	113231749	113231749	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001130079.1	+1	validated	p.I110	0.998	235	0%	262	41.2%	24	50%	-	-	-	NULL
MOV10	4343	genome.wustl.edu	37	1	113243250	113243250	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000285733	+1	known	p.P547S	0.189	30	0%	27	33.3%	93	43%	unknown(0)	-	-	NULL
LOC128322	128322	genome.wustl.edu	37	1	113290788	113290788	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_060943.1	+1	model	p.N24	0.997	50	0%	74	50%	0	-	-	-	-	HMMPfam_NTF2,superfamily_NTF2-like
PHTF1	10745	genome.wustl.edu	37	1	114254385	114254385	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006608.2	-1	validated	p.S344A	0.993	84	0%	105	50.5%	14	28.5%	possibly_damaging(0.882)	tolerated(0.4)	neutral(0.360)	NULL
RSBN1	54665	genome.wustl.edu	37	1	114308967	114308967	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018364.3	-1	validated	p.V682F	1.000	109	0%	123	17.9%	16	0%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
RSBN1	54665	genome.wustl.edu	37	1	114319975	114319975	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018364.3	-1	validated	e4-1	1.000	182	0%	208	46.2%	0	-	-	-	-	-
AP4B1	10717	genome.wustl.edu	37	1	114437811	114437811	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006594.2	-1	validated	p.L699S	0.444	132	0%	149	41.6%	8	37.5%	benign(0.41)	deleterious(0.01)	deleterious(0.538)	HMMPfam_B2-adapt-app_C
AP4B1	10717	genome.wustl.edu	37	1	114441364	114441364	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006594.2	-1	validated	p.L392I	0.998	170	0%	162	16%	12	0%	benign(0.406)	deleterious(0.02)	deleterious(0.514)	HMMPfam_Adaptin_N,superfamily_ARM-type_fold
DCLRE1B	64858	genome.wustl.edu	37	1	114454277	114454277	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_022836.3	+1	validated	p.E355*	1.000	56	1.8%	65	36.9%	3	33.3%	-	-	-	NULL
HIPK1	204851	genome.wustl.edu	37	1	114483068	114483068	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_198268.1	+1	reviewed	p.A21	0.553	161	0%	170	50.6%	10	20%	-	-	-	NULL
HIPK1	204851	genome.wustl.edu	37	1	114483071	114483071	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_198268.1	+1	reviewed	p.K22N	1.000	165	0%	173	39.9%	7	100%	probably_damaging(0.958)	deleterious(0)	deleterious(0.846)	NULL
HIPK1	204851	genome.wustl.edu	37	1	114499402	114499402	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_198268.1	+1	reviewed	p.T521P	1.000	229	0%	316	43.4%	15	46.6%	benign(0.114)	deleterious(0.04)	neutral(0.358)	NULL
HIPK1	204851	genome.wustl.edu	37	1	114510534	114510534	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_198268.1	+1	reviewed	p.S843L	1.000	120	0%	164	23.2%	41	29.2%	benign(0.245)	deleterious(0)	deleterious(0.470)	NULL
SYT6	148281	genome.wustl.edu	37	1	114640468	114640468	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_205848.2	-1	validated	p.R381C	0.997	82	0%	144	48.6%	0	-	probably_damaging(1)	tolerated(0.18)	deleterious(0.556)	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
TRIM33	51592	genome.wustl.edu	37	1	114940332	114940332	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015906.3	-1	reviewed	p.D1108Y	1.000	345	0%	381	44.6%	7	42.8%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
AMPD1	270	genome.wustl.edu	37	1	115217381	115217381	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000036.2	-1	reviewed	p.L598V	1.000	79	0%	133	51.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_A_deaminase,superfamily_SSF51556
AMPD1	270	genome.wustl.edu	37	1	115220970	115220970	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000036.2	-1	reviewed	p.S359Y	1.000	233	0%	299	15.4%	0	-	probably_damaging(0.974)	deleterious(0.01)	deleterious(0.822)	HMMPfam_A_deaminase,superfamily_SSF51556
CSDE1	7812	genome.wustl.edu	37	1	115273261	115273261	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001130523.1	-1	validated	p.I368	1.000	278	0%	328	45.4%	174	48.8%	-	-	-	HMMPfam_CSD,HMMSmart_SM00357,superfamily_Nucleic acid-binding proteins
CSDE1	7812	genome.wustl.edu	37	1	115277125	115277125	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001130523.1	-1	validated	p.R189C	1.000	174	0%	190	52.1%	91	43.9%	probably_damaging(0.999)	tolerated(0.19)	deleterious(0.540)	NULL
SYCP1	6847	genome.wustl.edu	37	1	115401167	115401167	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003176.2	+1	validated	e5-1	1.000	113	0%	104	37.5%	0	-	-	-	-	-
SYCP1	6847	genome.wustl.edu	37	1	115456635	115456635	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003176.2	+1	validated	p.E563*	1.000	169	0%	168	40.5%	0	-	-	-	-	HMMPfam_SCP-1
SYCP1	6847	genome.wustl.edu	37	1	115537563	115537563	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003176.2	+1	validated	p.R952W	0.001	167	0%	187	45.5%	0	-	probably_damaging(0.985)	deleterious(0)	deleterious(0.877)	NULL
TSHB	7252	genome.wustl.edu	37	1	115576724	115576724	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000549.3	+1	reviewed	p.P98H	1.000	243	0%	322	46.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00068,HMMPfam_Cys_knot,PatternScan_GLYCO_HORMONE_BETA_2,superfamily_Cystine-knot cytokines
CASQ2	845	genome.wustl.edu	37	1	116243866	116243866	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001232.3	-1	reviewed	p.E399A	0.995	480	0%	658	44.4%	4	50%	unknown(0)	-	-	NULL
CASQ2	845	genome.wustl.edu	37	1	116243876	116243876	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001232.3	-1	reviewed	p.D396N	0.995	469	0%	662	44.9%	3	66.6%	unknown(0)	-	-	NULL
CASQ2	845	genome.wustl.edu	37	1	116269689	116269689	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001232.3	-1	reviewed	p.M221V	1.000	160	0%	219	38.8%	0	-	probably_damaging(0.978)	tolerated(0.11)	deleterious(0.692)	HMMPfam_Calsequestrin,superfamily_Thioredoxin-like
ATP1A1	476	genome.wustl.edu	37	1	116935580	116935580	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000701.7	+1	reviewed	p.E479	1.000	196	0%	257	35.8%	458	46%	-	-	-	HMMPfam_Hydrolase,superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N,superfamily_Calcium ATPase transmembrane domain M
TTF2	8458	genome.wustl.edu	37	1	117626650	117626650	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003594.3	+1	reviewed	p.D638	0.002	431	0%	571	36.1%	23	26%	-	-	-	HMMPfam_SNF2_N,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
TRIM45	80263	genome.wustl.edu	37	1	117661118	117661118	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_025188.3	-1	reviewed	p.E254K	0.814	87	0%	103	42.7%	5	40%	benign(0.001)	tolerated(0.5)	neutral(0.010)	HMMSmart_SM00502
SPAG17	200162	genome.wustl.edu	37	1	118640368	118640368	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_206996.2	-1	validated	p.L312	1.000	458	0.2%	576	42.9%	0	-	-	-	-	NULL
HAO2	51179	genome.wustl.edu	37	1	119929330	119929330	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001005783.1	+1	reviewed	p.R216Q	0.055	237	0%	327	17.7%	0	-	benign(0.002)	tolerated(0.38)	neutral(0.018)	HMMPfam_FMN_dh,superfamily_FMN-linked oxidoreductases
ZNF697	90874	genome.wustl.edu	37	1	120168551	120168551	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001080470.1	-1	provisional	p.G58D	0.003	269	0%	305	51.1%	3	33.3%	benign(0)	tolerated(0.62)	neutral(0.004)	NULL
REG4	83998	genome.wustl.edu	37	1	120337285	120337285	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032044.3	-1	validated	p.E145K	0.000	339	0%	427	44.3%	1	100%	benign(0.037)	tolerated(0.23)	neutral(0.044)	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like,PatternScan_C_TYPE_LECTIN_1
ADAM30	11085	genome.wustl.edu	37	1	120437796	120437796	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021794.2	-1	reviewed	p.C388	0.927	51	0%	79	49.4%	0	-	-	-	-	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"
NOTCH2	4853	genome.wustl.edu	37	1	120497715	120497715	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024408.2	-1	reviewed	p.E723K	0.999	131	0%	175	45.7%	34	32.3%	possibly_damaging(0.807)	deleterious(0.02)	deleterious(0.687)	HMMSmart_EGF_CA,superfamily_SSF57196
NOTCH2	4853	genome.wustl.edu	37	1	120539803	120539803	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024408.2	-1	reviewed	p.G190R	0.252	77	0%	100	43%	112	31.2%	probably_damaging(0.989)	tolerated(0.44)	neutral(0.452)	HMMSmart_EGF_CA,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_SSF57196
NBPF9	400818	genome.wustl.edu	37	1	144822053	144822053	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001037675.2	+1	predicted	p.N342S	0.003	321	0%	435	26.4%	15	6.6%	-	-	-	NULL
PDE4DIP	9659	genome.wustl.edu	37	1	144879337	144879337	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014644.4	-1	validated	p.V1371	1.000	250	0%	295	15.9%	0	-	-	-	-	NULL
PDE4DIP	9659	genome.wustl.edu	37	1	144917574	144917574	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014644.4	-1	validated	p.R510	0.018	275	0%	356	14.9%	9	33.3%	-	-	-	NULL
PDE4DIP	9659	genome.wustl.edu	37	1	144946732	144946732	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014644.4	-1	validated	p.E177*	1.000	345	0%	542	18.6%	1	0%	-	-	-	NULL
HFE2	148738	genome.wustl.edu	37	1	145415778	145415778	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_213653.3	+1	reviewed	p.L199	0.957	69	0%	77	36.4%	0	-	-	-	-	HMMPfam_RGM_N
PIAS3	10401	genome.wustl.edu	37	1	145581189	145581189	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006099.3	+1	reviewed	p.E306D	1.000	66	1.5%	53	45.3%	69	36.2%	probably_damaging(0.999)	tolerated(0.1)	deleterious(0.777)	superfamily_SSF57850
PDZK1	5174	genome.wustl.edu	37	1	145748338	145748338	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002614.3	+1	provisional	p.V71I	1.000	189	0%	244	16.8%	2	0%	probably_damaging(0.964)	deleterious(0)	deleterious(0.851)	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ
NBPF9	400818	genome.wustl.edu	37	1	146401764	146401764	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_001717398.2	+1	model	p.I20S	0.000	184	0%	222	13.1%	1	100%	probably_damaging(0.98)	tolerated(0.1)	deleterious(0.710)	NULL
NBPF9	400818	genome.wustl.edu	37	1	146412147	146412147	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_001717398.2	+1	model	p.D169N	0.001	360	0%	556	16.7%	1	0%	possibly_damaging(0.842)	deleterious(0)	deleterious(0.766)	NULL
FMO5	2330	genome.wustl.edu	37	1	146684896	146684896	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001461.2	-1	reviewed	p.L156	0.974	186	0%	288	38.5%	1	100%	-	-	-	HMMPfam_FMO-like,superfamily_FAD/NAD(P)-binding domain
ACP6	51205	genome.wustl.edu	37	1	147131810	147131810	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016361.3	-1	validated	p.P100	0.685	160	0%	147	37.4%	32	37.5%	-	-	-	HMMPfam_Acid_phosphat_A,superfamily_Phosphoglycerate mutase-like
SV2A	9900	genome.wustl.edu	37	1	149877520	149877520	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014849.3	-1	validated	p.A653T	1.000	93	0%	123	43.9%	5	20%	benign(0.218)	tolerated(0.4)	neutral(0.037)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
OTUD7B	56957	genome.wustl.edu	37	1	149916121	149916121	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020205.2	-1	validated	p.G723S	0.852	30	0%	30	50%	17	70.5%	benign(0.088)	tolerated(0.05)	neutral(0.352)	NULL
VPS45	11311	genome.wustl.edu	37	1	150053549	150053549	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007259.3	+1	reviewed	p.F271L	1.000	209	0%	281	39.9%	12	16.6%	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	HMMPfam_Sec1,superfamily_Sec1/munc18-like (SM) proteins
VPS45	11311	genome.wustl.edu	37	1	150082737	150082737	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007259.3	+1	reviewed	p.T540	0.075	107	0%	152	46.7%	22	45.4%	-	-	-	HMMPfam_Sec1,superfamily_Sec1/munc18-like (SM) proteins
ANP32E	81611	genome.wustl.edu	37	1	150198948	150198948	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_030920.3	-1	validated	p.E225*	1.000	581	0%	712	44.8%	31	19.3%	-	-	-	NULL
ANP32E	81611	genome.wustl.edu	37	1	150204119	150204119	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_030920.3	-1	validated	p.R67Q	0.968	154	0%	189	14.8%	4	0%	possibly_damaging(0.827)	tolerated(0.18)	neutral(0.370)	superfamily_L domain-like
PRPF3	9129	genome.wustl.edu	37	1	150305577	150305577	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004698.2	+1	reviewed	p.R212Q	1.000	80	0%	73	41.1%	61	49.1%	probably_damaging(0.973)	tolerated(1)	neutral(0.415)	NULL
TMOD4	29765	genome.wustl.edu	37	1	151147252	151147252	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_013353.2	-1	validated	p.E34K	1.000	170	0%	247	47.8%	0	-	probably_damaging(0.959)	tolerated(0.13)	deleterious(0.655)	HMMPfam_Tropomodulin
VPS72	6944	genome.wustl.edu	37	1	151156814	151156814	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005997.1	-1	provisional	p.E181*	1.000	129	0%	159	21.4%	51	3.9%	-	-	-	HMMPfam_YL1
PI4KB	5298	genome.wustl.edu	37	1	151265334	151265334	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002651.1	-1	provisional	p.I827	1.000	207	0%	249	47.8%	133	40.6%	-	-	-	NULL
RFX5	5993	genome.wustl.edu	37	1	151315125	151315125	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000449.3	-1	reviewed	p.K463T	0.998	93	0%	127	46.5%	20	50%	possibly_damaging(0.602)	deleterious(0)	deleterious(0.653)	NULL
LINGO4	339398	genome.wustl.edu	37	1	151773497	151773497	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001004432.2	-1	provisional	p.G562C	1.000	46	0%	72	45.8%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RORC	6097	genome.wustl.edu	37	1	151787549	151787549	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005060.3	-1	reviewed	p.F217L	0.037	78	0%	87	43.7%	18	44.4%	benign(0)	tolerated(0.43)	neutral(0.013)	NULL
THEM5	284486	genome.wustl.edu	37	1	151820721	151820721	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_182578.3	-1	validated	p.S171F	0.963	116	0%	110	43.6%	0	-	benign(0.322)	tolerated(0.08)	neutral(0.401)	HMMPfam_4HBT,superfamily_SSF54637
TCHHL1	126637	genome.wustl.edu	37	1	152059078	152059078	+	Silent	SNP	A	A	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001008536.1	-1	provisional	p.S360	0.002	231	0%	315	45.4%	0	-	-	-	-	NULL
TCHH	7062	genome.wustl.edu	37	1	152080097	152080097	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007113.2	-1	provisional	p.Q1866*	0.950	284	0%	422	28.7%	3	66.6%	-	-	-	NULL
TCHH	7062	genome.wustl.edu	37	1	152081142	152081142	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007113.2	-1	provisional	p.F1517	0.303	159	0%	248	46.4%	1	100%	-	-	-	NULL
HRNR	388697	genome.wustl.edu	37	1	152192735	152192735	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001009931.1	-1	validated	p.S457Y	0.004	219	0.5%	328	47.9%	0	-	unknown(0)	-	-	NULL
FLG2	388698	genome.wustl.edu	37	1	152326695	152326695	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001014342.2	-1	provisional	p.F1189L	0.000	125	0%	157	44.6%	0	-	unknown(0)	tolerated(0.68)	-	NULL
FLG2	388698	genome.wustl.edu	37	1	152329042	152329042	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001014342.2	-1	provisional	p.S407Y	0.006	144	0%	198	30.8%	0	-	unknown(0)	deleterious(0.03)	-	NULL
LCE6A	448835	genome.wustl.edu	37	1	152816228	152816228	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001128600.1	+1	validated	p.E78*	0.003	124	0%	173	41%	0	-	-	-	-	NULL
SMCP	4184	genome.wustl.edu	37	1	152857138	152857138	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_030663.2	+1	reviewed	p.V80	0.000	82	0%	155	40%	0	-	-	-	-	NULL
SPRR4	163778	genome.wustl.edu	37	1	152944513	152944513	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_173080.1	+1	provisional	p.Q49H	0.976	144	0%	218	44.5%	0	-	unknown(0)	-	-	HMMPfam_Cornifin
SPRR2A	6700	genome.wustl.edu	37	1	153029056	153029056	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005988.2	-1	validated	p.Q52H	0.233	396	0%	521	43%	2	0%	unknown(0)	-	-	NULL
NPR1	4881	genome.wustl.edu	37	1	153655898	153655898	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000906.3	+1	validated	p.S437L	0.003	98	0%	130	49.2%	4	25%	benign(0.01)	tolerated(0.34)	neutral(0.024)	superfamily_Periplasmic binding protein-like I
NPR1	4881	genome.wustl.edu	37	1	153661483	153661483	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000906.3	+1	validated	p.A824	0.999	21	0%	47	36.2%	10	20%	-	-	-	superfamily_Protein kinase-like (PK-like)
NPR1	4881	genome.wustl.edu	37	1	153665737	153665737	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000368677	+1	known	p.A244S	0.021	62	0%	90	54.4%	0	-	benign(0)	tolerated(0.95)	-	NULL
INTS3	65123	genome.wustl.edu	37	1	153745682	153745682	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_023015.3	+1	validated	p.T1022M	1.000	156	0.6%	168	41.7%	20	40%	possibly_damaging(0.756)	tolerated(0.07)	deleterious(0.598)	NULL
ENSG00000246604	0	genome.wustl.edu	37	1	154184918	154184918	+	RNA	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000502106	+1	novel	NULL	0.000	80	0%	87	40.2%	0	-	-	-	-	-
ADAR	103	genome.wustl.edu	37	1	154558783	154558783	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001111.3	-1	reviewed	p.R1026W	1.000	72	0%	92	41.3%	189	38%	probably_damaging(0.993)	tolerated(0.16)	deleterious(0.510)	HMMPfam_A_deamin,HMMSmart_SM00552
PYGO2	90780	genome.wustl.edu	37	1	154931830	154931830	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_138300.3	-1	validated	p.A216T	1.000	114	0.9%	98	33.7%	4	25%	benign(0.138)	tolerated(1)	neutral(0.011)	NULL
SHC1	6464	genome.wustl.edu	37	1	154938237	154938237	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001130040.1	-1	validated	p.R470C	0.995	37	0%	41	41.5%	103	33.9%	probably_damaging(0.953)	deleterious(0.02)	deleterious(0.780)	superfamily_SH2 domain
ZBTB7B	51043	genome.wustl.edu	37	1	154988280	154988280	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015872.2	+1	validated	p.R382*	0.976	11	0%	25	64%	179	46.3%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
EFNA4	1945	genome.wustl.edu	37	1	155041455	155041455	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005227.2	+1	reviewed	p.R199Q	0.994	232	0%	283	39.2%	25	36%	unknown(0)	-	-	NULL
MTX1	4580	genome.wustl.edu	37	1	155180410	155180410	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002455.3	+1	validated	p.R224*	1.000	98	0%	136	43.4%	54	1.8%	-	-	-	HMMPfam_Tom37
SCAMP3	10067	genome.wustl.edu	37	1	155228742	155228742	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005698.2	-1	reviewed	p.R131Q	1.000	147	0%	165	44.2%	93	41.9%	probably_damaging(0.979)	tolerated(0.29)	neutral(0.451)	HMMPfam_SCAMP
RUSC1-AS1	284618	genome.wustl.edu	37	1	155290673	155290673	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001039517.1	-1	predicted	p.R203C	0.027	22	0%	50	44%	0	-	-	-	-	NULL
YY1AP1	55249	genome.wustl.edu	37	1	155646526	155646526	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_139118.1	-1	reviewed	p.L112P	0.993	288	0%	452	40%	39	43.5%	benign(0)	tolerated(1)	-	NULL
GON4L	54856	genome.wustl.edu	37	1	155774895	155774895	+	Missense_Mutation	SNP	G	G	T	rs59332147		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001037533.1	-1	validated	p.S497Y	1.000	221	0%	307	17.9%	8	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CCT3	7203	genome.wustl.edu	37	1	156280947	156280947	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005998.3	-1	reviewed	p.R399C	1.000	77	0%	78	46.2%	425	45.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cpn60_TCP1,superfamily_GroEL-ATPase,superfamily_SSF54849
IQGAP3	128239	genome.wustl.edu	37	1	156539206	156539206	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_178229.4	-1	validated	p.V29	0.901	41	0%	73	16.4%	7	14.2%	-	-	-	superfamily_Calponin-homology
NES	10763	genome.wustl.edu	37	1	156641941	156641941	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006617.1	-1	reviewed	p.S680Y	0.002	181	0%	226	42%	1	0%	benign(0.293)	deleterious(0.03)	neutral(0.455)	NULL
NES	10763	genome.wustl.edu	37	1	156642527	156642527	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006617.1	-1	reviewed	p.G485C	0.001	216	0%	261	44.4%	9	11.1%	benign(0.113)	deleterious(0)	neutral(0.454)	NULL
RRNAD1	51093	genome.wustl.edu	37	1	156701795	156701795	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015997.3	+1	validated	p.D42Y	0.999	91	0%	93	16.1%	34	26.4%	probably_damaging(0.986)	deleterious(0.01)	deleterious(0.840)	NULL
MRPL24	79590	genome.wustl.edu	37	1	156708373	156708373	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024540.3	-1	reviewed	p.R42C	1.000	60	0%	100	23%	132	16.6%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	superfamily_Transl_SH3_like
INSRR	3645	genome.wustl.edu	37	1	156812265	156812265	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014215.1	-1	validated	p.P1054	1.000	88	0%	103	22.3%	0	-	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
NTRK1	4914	genome.wustl.edu	37	1	156845920	156845920	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002529.3	+1	reviewed	p.G517V	1.000	68	0%	73	56.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP
ARHGEF11	9826	genome.wustl.edu	37	1	156948078	156948078	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_198236.1	-1	reviewed	p.R143Q	0.884	401	0%	509	46%	14	21.4%	possibly_damaging(0.85)	tolerated(0.56)	neutral(0.334)	NULL
ARHGEF11	9826	genome.wustl.edu	37	1	156955894	156955894	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_198236.1	-1	reviewed	p.S35L	0.999	265	0%	339	41.3%	18	27.7%	possibly_damaging(0.821)	deleterious(0)	deleterious(0.755)	superfamily_PDZ
ETV3L	440695	genome.wustl.edu	37	1	157069263	157069263	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001004341.2	-1	validated	p.I18T	0.999	49	0%	79	45.6%	0	-	benign(0.008)	tolerated(0.29)	neutral(0.029)	NULL
FCRL5	83416	genome.wustl.edu	37	1	157485636	157485636	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_031281.2	-1	validated	p.N947S	0.001	189	0%	230	46.1%	0	-	benign(0.012)	tolerated(0.17)	neutral(0.059)	NULL
FCRL3	115352	genome.wustl.edu	37	1	157666943	157666943	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_052939.3	-1	reviewed	p.Q277H	0.000	159	0%	210	18.1%	0	-	benign(0.256)	tolerated(0.55)	neutral(0.034)	HMMSmart_SM00409,superfamily_Immunoglobulin
FCRL1	115350	genome.wustl.edu	37	1	157771786	157771786	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_052938.4	-1	reviewed	p.E269*	0.978	90	0%	129	45%	0	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
KIRREL	55243	genome.wustl.edu	37	1	158061171	158061171	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018240.5	+1	validated	p.F432L	1.000	136	0%	153	45.8%	8	0%	benign(0.248)	tolerated(0.36)	neutral(0.045)	HMMSmart_SM00409,superfamily_Immunoglobulin
CD1C	911	genome.wustl.edu	37	1	158261894	158261894	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001765.2	+1	reviewed	p.K117E	0.000	106	0%	130	18.5%	0	-	benign(0.001)	tolerated(0.86)	neutral(0.001)	HMMPfam_MHC_I,superfamily_MHC_I/II-like_Ag-recog
OR6P1	128366	genome.wustl.edu	37	1	158533033	158533033	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000334632	-1	known	p.D121G	1.000	104	0%	115	37.4%	0	-	possibly_damaging(0.886)	deleterious(0)	deleterious(0.791)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321
OR10X1	128367	genome.wustl.edu	37	1	158548875	158548875	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001004477.1	-1	provisional	p.S272F	0.542	124	0%	186	45.2%	0	-	probably_damaging(0.955)	deleterious(0)	deleterious(0.843)	HMMPfam_7tm_1,superfamily_SSF81321
OR10X1	128367	genome.wustl.edu	37	1	158548974	158548974	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001004477.1	-1	provisional	p.S239Y	0.001	95	0%	127	43.3%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_7tm_1,superfamily_SSF81321
SPTA1	6708	genome.wustl.edu	37	1	158607858	158607858	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003126.2	-1	reviewed	p.F1718L	1.000	190	0%	229	46.7%	0	-	probably_damaging(0.991)	tolerated(0.19)	deleterious(0.493)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SPTA1	6708	genome.wustl.edu	37	1	158615040	158615040	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003126.2	-1	reviewed	p.D1378N	0.288	179	0%	253	43.1%	0	-	benign(0.018)	tolerated(0.27)	neutral(0.034)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SPTA1	6708	genome.wustl.edu	37	1	158631176	158631176	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003126.2	-1	reviewed	p.K830Q	1.000	285	0%	393	45.3%	0	-	benign(0.273)	deleterious(0)	deleterious(0.474)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
OR6K3	391114	genome.wustl.edu	37	1	158687528	158687528	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001005327.2	-1	validated	p.I142	1.000	111	0%	130	47.7%	0	-	-	-	-	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321
OR6N2	81442	genome.wustl.edu	37	1	158746549	158746549	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001005278.1	-1	provisional	p.R293C	0.997	203	0%	273	23.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF81321
PYHIN1	149628	genome.wustl.edu	37	1	158913694	158913694	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152501.3	+1	validated	p.R373*	0.001	147	0%	194	40.2%	0	-	-	-	-	HMMPfam_HIN
CADM3	57863	genome.wustl.edu	37	1	159162433	159162433	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021189.3	+1	validated	p.N133D	1.000	147	0%	184	47.3%	0	-	benign(0)	tolerated(0.38)	neutral(0.018)	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
FCER1A	2205	genome.wustl.edu	37	1	159275892	159275892	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002001.2	+1	reviewed	p.G149V	0.000	178	0%	231	41.1%	0	-	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
OR10J1	26476	genome.wustl.edu	37	1	159409596	159409596	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012351.2	+1	validated	p.N16K	0.002	215	0%	258	38.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Family A G protein-coupled receptor-like
FCRL6	343413	genome.wustl.edu	37	1	159778098	159778098	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001004310.2	+1	validated	p.F61	0.000	52	0%	81	39.5%	0	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
ATP1A2	477	genome.wustl.edu	37	1	160100012	160100012	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000702.3	+1	reviewed	p.D528N	1.000	54	0%	105	43.8%	1	0%	benign(0.001)	tolerated(0.18)	neutral(0.056)	HMMPfam_Hydrolase,superfamily_SSF56784,superfamily_SSF81660,superfamily_SSF81665
ATP1A4	480	genome.wustl.edu	37	1	160143912	160143912	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_144699.3	+1	reviewed	p.A668V	1.000	80	0%	136	44.1%	0	-	possibly_damaging(0.466)	deleterious(0.01)	deleterious(0.558)	HMMPfam_Hydrolase,superfamily_HAD-like,superfamily_Calcium ATPase transmembrane domain M
NCSTN	23385	genome.wustl.edu	37	1	160327987	160327987	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015331.2	+1	reviewed	p.V686I	0.029	171	0%	210	40.5%	215	42.7%	benign(0.057)	tolerated(0.3)	neutral(0.032)	NULL
CD84	8832	genome.wustl.edu	37	1	160518080	160518080	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003874.3	-1	validated	p.P318H	0.001	284	0%	365	47.1%	0	-	probably_damaging(0.993)	tolerated(0.09)	deleterious(0.746)	NULL
CD244	51744	genome.wustl.edu	37	1	160811230	160811230	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016382.3	-1	reviewed	p.D142G	0.000	80	0%	114	47.4%	0	-	benign(0.019)	tolerated(0.13)	neutral(0.254)	NULL
ITLN1	55600	genome.wustl.edu	37	1	160849191	160849191	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017625.2	-1	validated	p.A233	0.013	162	0%	210	34.3%	0	-	-	-	-	superfamily_Fibrinogen C-terminal domain-like
F11R	50848	genome.wustl.edu	37	1	160970428	160970428	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016946.4	-1	reviewed	p.I127	0.742	134	0%	161	38.5%	435	41.8%	-	-	-	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
ARHGAP30	257106	genome.wustl.edu	37	1	161017863	161017863	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001025598.1	-1	validated	p.R983Q	0.948	43	0%	42	45.2%	1	100%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
B4GALT3	8703	genome.wustl.edu	37	1	161145756	161145756	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003779.2	-1	reviewed	p.R32Q	0.998	63	0%	74	17.6%	12	33.3%	benign(0.339)	tolerated(0.08)	neutral(0.407)	NULL
NDUFS2	4720	genome.wustl.edu	37	1	161179031	161179031	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004550.4	+1	reviewed	p.E148K	0.997	226	0%	238	43.3%	145	46.2%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_SSF56762
FCGR3A	2214	genome.wustl.edu	37	1	161518212	161518212	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000426740	-1	known	p.S123L	0.000	420	0%	536	26.7%	3	0%	-	-	-	superfamily_Immunoglobulin
FCGR3B	2215	genome.wustl.edu	37	1	161596169	161596169	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000570.3	-1	validated	p.R115W	0.000	169	0%	201	48.8%	2	0%	probably_damaging(0.999)	tolerated(0.08)	deleterious(0.790)	HMMSmart_SM00409,superfamily_Immunoglobulin
OLFML2B	25903	genome.wustl.edu	37	1	161954728	161954728	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015441.1	-1	provisional	p.T506I	0.938	288	0%	401	41.1%	6	0%	possibly_damaging(0.778)	tolerated(0.14)	deleterious(0.540)	HMMPfam_OLF,HMMSmart_SM00284
OLFML2B	25903	genome.wustl.edu	37	1	161993207	161993207	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015441.1	-1	provisional	p.R5Q	0.018	69	0%	110	26.4%	6	0%	benign(0.095)	deleterious(0.01)	neutral(0.413)	NULL
NOS1AP	9722	genome.wustl.edu	37	1	162337141	162337141	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014697.2	+1	reviewed	p.N469D	1.000	11	0%	19	36.8%	0	-	possibly_damaging(0.936)	deleterious(0)	deleterious(0.826)	NULL
UHMK1	127933	genome.wustl.edu	37	1	162467922	162467922	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_175866.4	+1	reviewed	p.G44	1.000	6	0.000	11	0.636	7	57.1%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
UHMK1	127933	genome.wustl.edu	37	1	162482316	162482316	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_175866.4	+1	reviewed	p.R292I	0.988	441	0%	476	12.4%	14	7.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
DDR2	4921	genome.wustl.edu	37	1	162749998	162749998	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001014796.1	+1	reviewed	p.E844*	1.000	207	0%	292	38.7%	8	0%	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
POGK	57645	genome.wustl.edu	37	1	166819117	166819117	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017542.3	+1	reviewed	p.R434H	0.998	136	0%	226	43.4%	22	50%	probably_damaging(0.999)	tolerated(0.08)	deleterious(0.790)	HMMPfam_DDE
ILDR2	387597	genome.wustl.edu	37	1	166944477	166944477	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_199351.1	-1	provisional	p.S10Y	0.332	139	0%	150	41.3%	1	0%	benign(0)	tolerated(0.09)	neutral(0.296)	NULL
ADCY10	55811	genome.wustl.edu	37	1	167849384	167849384	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018417.4	-1	reviewed	p.I395	0.960	94	0%	122	45.9%	0	-	-	-	-	HMMPfam_Guanylate_cyc,superfamily_Adenylyl and guanylyl cyclase catalytic domain
DCAF6	55827	genome.wustl.edu	37	1	167956836	167956836	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018442.2	+1	validated	p.D181G	1.000	199	0%	291	48.1%	49	34.6%	probably_damaging(0.998)	tolerated(0.33)	deleterious(0.498)	superfamily_WD40_like,HMMPfam_WD40
DCAF6	55827	genome.wustl.edu	37	1	168037605	168037605	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018442.2	+1	validated	p.R828*	1.000	240	0%	222	15.3%	23	0%	-	-	-	superfamily_WD40_like
DCAF6	55827	genome.wustl.edu	37	1	168037606	168037606	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018442.2	+1	validated	p.R828Q	1.000	242	0.4%	223	39%	23	82.6%	possibly_damaging(0.732)	deleterious(0.01)	deleterious(0.673)	superfamily_WD40_like
GPR161	23432	genome.wustl.edu	37	1	168065851	168065851	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_153832.1	-1	provisional	p.R332C	0.997	63	0%	79	36.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Family A G protein-coupled receptor-like
TBX19	9095	genome.wustl.edu	37	1	168262449	168262449	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005149.2	+1	reviewed	p.R179Q	0.993	187	0%	251	51%	1	100%	possibly_damaging(0.631)	tolerated(0.06)	deleterious(0.543)	HMMPfam_T-box,HMMSmart_TBOX,superfamily_P53_like_DNA_bnd
ATP1B1	481	genome.wustl.edu	37	1	169096516	169096516	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001677.3	+1	reviewed	p.R146Q	0.987	257	0%	364	45.1%	57	52.6%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMPfam_Na_K-ATPase,PatternScan_ATPASE_NA_K_BETA_2
C1orf114	57821	genome.wustl.edu	37	1	169388371	169388371	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021179.1	-1	predicted	p.E365D	0.988	458	0%	524	12.2%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
F5	2153	genome.wustl.edu	37	1	169500163	169500163	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000130.4	-1	reviewed	p.S1690F	1.000	210	0%	232	24.6%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Cupredoxins
F5	2153	genome.wustl.edu	37	1	169510007	169510007	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000130.4	-1	reviewed	p.D1441Y	0.984	211	0%	274	50.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_LSPR
F5	2153	genome.wustl.edu	37	1	169510315	169510315	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000130.4	-1	reviewed	p.N1338S	0.000	776	0%	949	42.4%	0	-	benign(0)	tolerated(0.28)	neutral(0.032)	HMMPfam_LSPR
F5	2153	genome.wustl.edu	37	1	169524520	169524520	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000130.4	-1	reviewed	p.T340A	0.731	225	0%	338	42.9%	0	-	probably_damaging(0.995)	deleterious(0.02)	deleterious(0.841)	NULL
SELE	6401	genome.wustl.edu	37	1	169696645	169696645	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000450.2	-1	reviewed	p.A497G	0.000	82	0%	103	44.7%	1	0%	benign(0.083)	tolerated(0.36)	neutral(0.026)	HMMPfam_Sushi,HMMSmart_SM00032,HMMSmart_SM00181,superfamily_Complement control module/SCR domain
SELE	6401	genome.wustl.edu	37	1	169697037	169697037	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000450.2	-1	reviewed	p.P437	0.000	68	0%	81	39.5%	0	-	-	-	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
SCYL3	57147	genome.wustl.edu	37	1	169857854	169857854	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_181093.2	-1	validated	p.K43R	1.000	456	0%	563	47.4%	3	33.3%	possibly_damaging(0.799)	tolerated(0.66)	neutral(0.303)	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
KIFAP3	22920	genome.wustl.edu	37	1	170024464	170024464	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014970.2	-1	reviewed	p.R49Q	1.000	225	0.4%	313	39.9%	4	25%	possibly_damaging(0.863)	tolerated(0.08)	deleterious(0.633)	HMMPfam_KAP
GORAB	92344	genome.wustl.edu	37	1	170521544	170521544	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152281.2	+1	reviewed	p.L376I	0.004	163	0%	250	43.2%	12	41.6%	benign(0.17)	tolerated(0.19)	neutral(0.065)	NULL
C1orf129	80133	genome.wustl.edu	37	1	170927678	170927678	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_025063.2	+1	validated	p.S50Y	0.996	263	0%	346	37.9%	0	-	possibly_damaging(0.946)	deleterious(0)	deleterious(0.835)	NULL
FMO3	2328	genome.wustl.edu	37	1	171076815	171076815	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001002294.2	+1	reviewed	e3-1	1.000	234	0%	285	25.3%	0	-	-	-	-	-
FMO2	2327	genome.wustl.edu	37	1	171178011	171178011	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001460.2	+1	reviewed	p.A445	0.000	264	0%	321	49.8%	0	-	-	-	-	HMMPfam_FMO-like
ANKRD45	339416	genome.wustl.edu	37	1	173594037	173594037	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_198493.2	-1	validated	p.K207Q	0.058	308	0%	356	44.1%	1	0%	probably_damaging(0.996)	tolerated(0.09)	deleterious(0.758)	superfamily_Heat shock protein 70kD (HSP70) C-terminal subdomain
RC3H1	149041	genome.wustl.edu	37	1	173934205	173934205	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_172071.2	-1	validated	p.L463W	1.000	98	0%	132	38.6%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
RC3H1	149041	genome.wustl.edu	37	1	173961984	173961984	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_172071.2	-1	validated	p.R47H	1.000	200	0%	291	46.4%	5	20%	possibly_damaging(0.952)	deleterious(0.03)	deleterious(0.760)	HMMSmart_SM00184,superfamily_RING/U-box
TNR	7143	genome.wustl.edu	37	1	175362946	175362946	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000422274	-1	known	p.R167*	0.877	204	0%	231	48.5%	0	-	-	-	-	NULL
RFWD2	64326	genome.wustl.edu	37	1	175957509	175957509	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_022457.5	-1	validated	p.K629	0.997	298	0%	371	41.5%	59	38.9%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like
RFWD2	64326	genome.wustl.edu	37	1	176055021	176055021	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_022457.5	-1	validated	p.K344N	1.000	171	0%	208	37.5%	26	53.8%	benign(0.137)	tolerated(0.28)	neutral(0.043)	superfamily_WD40 repeat-like
FAM5B	57795	genome.wustl.edu	37	1	177245369	177245369	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021165.2	+1	provisional	p.R271C	1.000	21	0%	41	41.5%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMSmart_SM00457
FAM5B	57795	genome.wustl.edu	37	1	177247810	177247810	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021165.2	+1	provisional	p.L375P	1.000	55	0%	72	37.5%	0	-	possibly_damaging(0.896)	deleterious(0.01)	deleterious(0.759)	NULL
SEC16B	89866	genome.wustl.edu	37	1	177905488	177905488	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033127.2	-1	validated	p.V839A	0.000	317	0%	407	36.9%	1	0%	benign(0.002)	tolerated(0.27)	neutral(0.034)	NULL
SEC16B	89866	genome.wustl.edu	37	1	177921100	177921100	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033127.2	-1	validated	p.P498	0.026	101	0%	154	40.3%	2	0%	-	-	-	NULL
RASAL2	9462	genome.wustl.edu	37	1	178427528	178427528	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_170692.2	+1	reviewed	p.S1023Y	1.000	57	0%	67	50.7%	16	37.5%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	NULL
ANGPTL1	9068	genome.wustl.edu	37	1	178822893	178822893	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004673.3	-1	reviewed	p.E285*	1.000	214	0%	302	41.4%	0	-	-	-	-	HMMPfam_Fibrinogen_C,HMMSmart_FBG,superfamily_Fibrinogen_a/b/g_C
RALGPS2	55103	genome.wustl.edu	37	1	178854384	178854384	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000415888	+1	known	p.S97Y	0.000	75	0%	111	41.4%	0	-	unknown(0)	-	-	NULL
FAM20B	9917	genome.wustl.edu	37	1	179033145	179033145	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014864.3	+1	validated	p.S220T	0.993	155	0%	192	41.7%	20	30%	benign(0.002)	tolerated(0.59)	neutral(0.004)	HMMPfam_DUF1193
ABL2	27	genome.wustl.edu	37	1	179077836	179077836	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007314.3	-1	reviewed	p.G856*	1.000	90	0%	118	42.4%	2	50%	-	-	-	NULL
ABL2	27	genome.wustl.edu	37	1	179078402	179078402	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007314.3	-1	reviewed	p.K667R	1.000	226	0%	288	44.4%	1	100%	possibly_damaging(0.873)	deleterious(0)	deleterious(0.784)	NULL
ABL2	27	genome.wustl.edu	37	1	179084162	179084162	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007314.3	-1	reviewed	p.F471C	1.000	172	0%	235	45.5%	1	0%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
SOAT1	6646	genome.wustl.edu	37	1	179307019	179307019	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003101.4	+1	provisional	p.R126H	0.000	352	0%	395	42.8%	12	50%	possibly_damaging(0.732)	tolerated(0.08)	deleterious(0.568)	NULL
AXDND1	126859	genome.wustl.edu	37	1	179363084	179363084	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_144696.4	+1	validated	p.D304N	1.000	220	0%	260	41.9%	0	-	unknown(0)	tolerated(0.48)	-	NULL
CEP350	9857	genome.wustl.edu	37	1	179990001	179990001	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014810.4	+1	reviewed	p.F1031S	1.000	30	0%	33	42.4%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CEP350	9857	genome.wustl.edu	37	1	180006139	180006139	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014810.4	+1	reviewed	p.S1342L	1.000	235	0%	302	47%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CEP350	9857	genome.wustl.edu	37	1	180047767	180047767	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014810.4	+1	reviewed	p.I1979M	1.000	176	0%	236	17.4%	2	50%	benign(0.052)	tolerated(0.06)	neutral(0.326)	NULL
CEP350	9857	genome.wustl.edu	37	1	180063216	180063216	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014810.4	+1	reviewed	p.S2659*	0.898	88	0%	108	39.8%	0	-	-	-	-	NULL
XPR1	9213	genome.wustl.edu	37	1	180794300	180794300	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004736.3	+1	validated	e9-1	1.000	356	0.3%	405	40.5%	0	-	-	-	-	-
MR1	3140	genome.wustl.edu	37	1	181018257	181018257	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001531.1	+1	provisional	p.S46L	0.095	122	0%	154	25.3%	2	0%	probably_damaging(0.955)	tolerated(0.13)	deleterious(0.651)	HMMPfam_MHC_I,superfamily_MHC antigen-recognition domain
RGSL1	353299	genome.wustl.edu	37	1	182499414	182499414	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001137669.1	+1	validated	p.E721*	0.202	168	0%	208	37.5%	0	-	-	-	-	superfamily_Regulator of G-protein signaling RGS
NPL	80896	genome.wustl.edu	37	1	182794932	182794932	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_030769.1	+1	provisional	p.F252C	1.000	447	0%	516	47.9%	0	-	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	HMMPfam_DHDPS,superfamily_Aldolase
SHCBP1L	81626	genome.wustl.edu	37	1	182872239	182872239	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_030933.2	-1	validated	p.H549N	1.000	286	0%	358	37.4%	0	-	probably_damaging(0.978)	tolerated(0.12)	deleterious(0.681)	HMMSmart_PbH1,superfamily_Pectin_lyas_like
NMNAT2	23057	genome.wustl.edu	37	1	183387373	183387373	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015039.2	-1	reviewed	p.I10	1.000	315	0%	465	40.6%	0	-	-	-	-	superfamily_Nucleotidylyl transferase
RGL1	23179	genome.wustl.edu	37	1	183854066	183854066	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015149.3	+1	validated	p.I350	1.000	137	0%	178	43.3%	7	14.2%	-	-	-	HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF
FAM129A	116496	genome.wustl.edu	37	1	184764666	184764666	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_052966.2	-1	validated	p.N744	0.000	284	0%	374	48.4%	0	-	-	-	-	NULL
TRMT1L	81627	genome.wustl.edu	37	1	185094207	185094207	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_030934.4	-1	reviewed	p.R543I	1.000	178	0%	237	46%	6	50%	possibly_damaging(0.822)	deleterious(0)	deleterious(0.756)	HMMPfam_TRM,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
IVNS1ABP	10625	genome.wustl.edu	37	1	185267182	185267182	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006469.4	-1	validated	p.K638N	1.000	108	0%	97	40.2%	44	34%	benign(0.001)	tolerated(0.19)	neutral(0.050)	HMMSmart_SM00612,superfamily_Galactose oxidase central domain
IVNS1ABP	10625	genome.wustl.edu	37	1	185277949	185277949	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006469.4	-1	validated	p.M114L	1.000	460	0%	455	43.1%	16	31.2%	benign(0)	tolerated(0.14)	neutral(0.249)	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB
HMCN1	83872	genome.wustl.edu	37	1	185833660	185833660	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_031935.2	+1	reviewed	p.S133Y	1.000	415	0%	550	15.6%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	superfamily_vWA-like
HMCN1	83872	genome.wustl.edu	37	1	185932925	185932925	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_031935.2	+1	reviewed	p.L666	1.000	175	0%	203	44.8%	0	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
HMCN1	83872	genome.wustl.edu	37	1	185985292	185985292	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_031935.2	+1	reviewed	p.E1704	0.761	197	0%	280	50.7%	0	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
HMCN1	83872	genome.wustl.edu	37	1	185987459	185987459	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_031935.2	+1	reviewed	p.K1815	0.852	195	0%	297	43.1%	0	-	-	-	-	HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
HMCN1	83872	genome.wustl.edu	37	1	185992178	185992178	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_031935.2	+1	reviewed	p.R1881Q	1.000	127	0%	162	42%	1	0%	probably_damaging(0.999)	tolerated(0.68)	deleterious(0.492)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
HMCN1	83872	genome.wustl.edu	37	1	186037123	186037123	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_031935.2	+1	reviewed	p.N2621K	0.997	158	0%	286	44.8%	0	-	probably_damaging(0.996)	tolerated(0.89)	neutral(0.462)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
HMCN1	83872	genome.wustl.edu	37	1	186120737	186120737	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_031935.2	+1	reviewed	e95-1	1.000	194	0%	242	26.4%	0	-	-	-	-	-
PRG4	10216	genome.wustl.edu	37	1	186269222	186269222	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005807.3	+1	reviewed	e2-1	1.000	104	0%	151	37.7%	0	-	-	-	-	-
PRG4	10216	genome.wustl.edu	37	1	186275481	186275481	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005807.3	+1	reviewed	p.K210N	0.206	155	0%	253	39.5%	0	-	unknown(0)	-	-	NULL
TPR	7175	genome.wustl.edu	37	1	186327712	186327712	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003292.2	-1	reviewed	p.R487Q	1.000	541	0.4%	591	42%	14	28.5%	benign(0.002)	tolerated(1)	-	NULL
TPR	7175	genome.wustl.edu	37	1	186329990	186329990	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003292.2	-1	reviewed	p.D336Y	0.982	463	0%	584	41.4%	2	50%	benign(0.296)	deleterious(0.02)	deleterious(0.475)	NULL
C1orf27	54953	genome.wustl.edu	37	1	186375247	186375247	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017847.5	+1	validated	p.R345*	1.000	279	0.4%	375	42.7%	4	50%	-	-	-	NULL
PLA2G4A	5321	genome.wustl.edu	37	1	186909113	186909113	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024420.2	+1	reviewed	p.R307I	1.000	224	0%	241	13.7%	5	40%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_PLA2_B,HMMSmart_SM00022,superfamily_FabD/lysophospholipase-like
TROVE2	6738	genome.wustl.edu	37	1	193045659	193045659	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004600.5	+1	validated	p.P277L	1.000	231	0%	257	45.5%	3	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TROVE
CDC73	79577	genome.wustl.edu	37	1	193111048	193111048	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024529.4	+1	reviewed	p.R194I	1.000	114	0%	115	33.9%	22	40.9%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
CDC73	79577	genome.wustl.edu	37	1	193202142	193202142	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024529.4	+1	reviewed	p.K392Q	1.000	176	0%	214	30.8%	9	33.3%	probably_damaging(0.996)	deleterious(0.04)	deleterious(0.810)	HMMPfam_CDC73
KCNT2	343450	genome.wustl.edu	37	1	196311227	196311227	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_198503.2	-1	validated	p.S512Y	1.000	208	0%	277	26%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_BK_channel_a,superfamily_NAD(P)-binding Rossmann-fold domains
CFHR1	3078	genome.wustl.edu	37	1	196794680	196794680	+	Missense_Mutation	SNP	G	G	T	rs41315553		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002113.2	+1	reviewed	p.Q44H	0.000	186	0%	224	31.2%	0	-	benign(0.044)	deleterious(0.01)	neutral(0.408)	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module
CFHR1	3078	genome.wustl.edu	37	1	196796027	196796027	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002113.2	+1	reviewed	p.D108Y	0.023	205	0%	251	85.3%	0	-	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module
CFHR4	10877	genome.wustl.edu	37	1	196871667	196871667	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006684.2	+1	validated	p.F60V	0.158	297	0%	353	41.9%	0	-	benign(0.013)	deleterious(0.01)	neutral(0.406)	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module
ASPM	259266	genome.wustl.edu	37	1	197069989	197069989	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018136.4	-1	reviewed	p.Y2798H	0.015	146	0%	220	44.5%	6	50%	benign(0.009)	tolerated(0.15)	neutral(0.241)	NULL
ASPM	259266	genome.wustl.edu	37	1	197073350	197073350	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018136.4	-1	reviewed	p.S1677	0.000	135	0%	174	23.6%	3	33.3%	-	-	-	HMMSmart_SM00015,superfamily_P-loop containing nucleoside triphosphate hydrolases
ZBTB41	360023	genome.wustl.edu	37	1	197169031	197169031	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_194314.2	-1	validated	p.S191	0.989	140	0%	146	13%	0	-	-	-	-	NULL
DENND1B	163486	genome.wustl.edu	37	1	197509180	197509180	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001142795.1	-1	validated	p.T457A	0.113	418	0%	399	27.1%	2	50%	benign(0.002)	tolerated(0.9)	-	NULL
DENND1B	163486	genome.wustl.edu	37	1	197616218	197616218	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_144977.4	-1	validated	p.E158D	1.000	217	0%	281	43.8%	1	0%	possibly_damaging(0.812)	tolerated(0.55)	neutral(0.312)	HMMPfam_DENN,HMMSmart_SM00799
LHX9	56956	genome.wustl.edu	37	1	197898252	197898252	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020204.2	+1	reviewed	p.L353I	1.000	70	0%	104	32.7%	0	-	possibly_damaging(0.645)	tolerated(0.15)	neutral(0.467)	NULL
NEK7	140609	genome.wustl.edu	37	1	198262081	198262081	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_133494.2	+1	validated	p.T199M	1.000	463	0%	517	43.1%	3	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
PTPRC	5788	genome.wustl.edu	37	1	198719713	198719713	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002838.3	+1	reviewed	p.V1053	0.975	185	0%	267	46.8%	4	0%	benign(0.301)	tolerated(0.26)	neutral(0.127)	HMMPfam_Y_phosphatase,HMMSmart_SM00194,superfamily_(Phosphotyrosine protein) phosphatases II
NR5A2	2494	genome.wustl.edu	37	1	200017938	200017938	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_205860.1	+1	validated	p.E368*	1.000	144	0%	144	43.1%	0	-	-	-	-	HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain
DDX59	83479	genome.wustl.edu	37	1	200635745	200635745	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001031725.4	-1	validated	p.V42I	0.000	247	0%	311	43.1%	15	40%	benign(0.009)	tolerated(0.37)	neutral(0.019)	NULL
CAMSAP2	23271	genome.wustl.edu	37	1	200801964	200801964	+	Silent	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_203459.1	+1	validated	p.S306	0.883	216	0%	323	39.3%	5	60%	-	-	-	superfamily_Calponin-homology domain CH-domain
KIF21B	23046	genome.wustl.edu	37	1	200967614	200967614	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017596.2	-1	provisional	p.R659W	1.000	72	0%	116	23.3%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_WD40_like
CACNA1S	779	genome.wustl.edu	37	1	201016310	201016310	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000069.2	-1	reviewed	p.R1534Q	1.000	187	0%	254	47.6%	0	-	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	HMMPfam_Ca_chan_IQ
CACNA1S	779	genome.wustl.edu	37	1	201038632	201038632	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000069.2	-1	reviewed	p.D820Y	1.000	76	0%	84	52.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF81324
CACNA1S	779	genome.wustl.edu	37	1	201052360	201052360	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000069.2	-1	reviewed	p.I441	0.435	98	0%	94	41.5%	0	-	-	-	-	superfamily_SSF81324
TMEM9	252839	genome.wustl.edu	37	1	201120888	201120888	+	Splice_Site	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016456.3	-1	validated	e2+1	1.000	170	0%	195	47.7%	0	-	-	-	-	-
LAD1	3898	genome.wustl.edu	37	1	201352333	201352333	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005558.3	-1	reviewed	p.E419*	0.351	69	0%	60	56.7%	63	4.7%	-	-	-	NULL
NAV1	89796	genome.wustl.edu	37	1	201618225	201618225	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020443.4	+1	reviewed	p.E143	1.000	11	0%	41	19.5%	1	0%	-	-	-	NULL
NAV1	89796	genome.wustl.edu	37	1	201687687	201687687	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020443.4	+1	reviewed	p.A344T	0.780	22	0%	33	42.4%	2	0%	benign(0.01)	tolerated(0.17)	neutral(0.059)	NULL
NAV1	89796	genome.wustl.edu	37	1	201759832	201759832	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020443.4	+1	reviewed	p.R1087C	1.000	258	0%	400	46%	3	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NAV1	89796	genome.wustl.edu	37	1	201780809	201780809	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020443.4	+1	reviewed	p.L1623I	1.000	333	0%	433	42.5%	2	0%	benign(0)	tolerated(1)	-	HMMSmart_AAA,superfamily_SSF52540
NAV1	89796	genome.wustl.edu	37	1	201786394	201786394	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020443.4	+1	reviewed	p.S1837Y	1.000	122	0%	136	39%	6	100%	possibly_damaging(0.609)	tolerated(0.06)	deleterious(0.533)	NULL
IPO9	55705	genome.wustl.edu	37	1	201826283	201826283	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018085.4	+1	validated	p.F394L	0.998	237	0%	314	26.1%	8	25%	possibly_damaging(0.676)	tolerated(0.21)	neutral(0.284)	superfamily_ARM repeat
KDM5B	10765	genome.wustl.edu	37	1	202698951	202698951	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006618.3	-1	validated	p.R1461C	0.740	330	0%	437	39.6%	93	38.7%	possibly_damaging(0.804)	deleterious(0)	deleterious(0.747)	NULL
KDM5B	10765	genome.wustl.edu	37	1	202705347	202705347	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006618.3	-1	validated	p.L1086	0.640	180	0%	233	28.3%	14	21.4%	-	-	-	HMMPfam_PLU-1
CYB5R1	51706	genome.wustl.edu	37	1	202933798	202933798	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016243.2	-1	validated	p.K167N	1.000	364	0%	480	26.5%	17	17.6%	benign(0.226)	tolerated(0.06)	neutral(0.345)	superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain
PPFIA4	8497	genome.wustl.edu	37	1	203044869	203044869	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015053.1	+1	validated	p.K680N	1.000	3	0.000	14	0.357	0	-	benign(0)	tolerated(0.1)	neutral(0.286)	NULL
FMOD	2331	genome.wustl.edu	37	1	203316618	203316618	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002023.3	-1	reviewed	p.D261N	0.974	89	0%	162	24.7%	25	8%	benign(0.045)	tolerated(0.37)	neutral(0.021)	superfamily_SSF52058
LAX1	54900	genome.wustl.edu	37	1	203743062	203743062	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017773.3	+1	validated	p.Y150	0.000	67	0%	111	24.3%	2	0%	-	-	-	NULL
ZC3H11A	9877	genome.wustl.edu	37	1	203797493	203797493	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014827.4	+1	validated	p.A81T	1.000	250	0%	294	42.9%	62	35.4%	benign(0.02)	deleterious(0.02)	neutral(0.384)	HMMSmart_ZnF_C3H1
MFSD4	148808	genome.wustl.edu	37	1	205566951	205566951	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_181644.4	+1	validated	p.E447D	1.000	601	0.3%	701	43.1%	12	33.3%	benign(0.273)	tolerated(0.15)	neutral(0.270)	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
SLC45A3	85414	genome.wustl.edu	37	1	205632076	205632076	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033102.2	-1	validated	p.S281	1.000	18	0%	27	44.4%	2	50%	-	-	-	superfamily_MFS general substrate transporter
CTSE	1510	genome.wustl.edu	37	1	206319142	206319142	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001910.2	+1	reviewed	p.Q89H	1.000	249	0%	290	45.2%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Asp,superfamily_Pept_Aspartic
RASSF5	83593	genome.wustl.edu	37	1	206760287	206760287	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_182663.2	+1	reviewed	p.E412*	1.000	210	0%	214	46.3%	2	0%	-	-	-	NULL
DYRK3	8444	genome.wustl.edu	37	1	206820831	206820831	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003582.2	+1	reviewed	p.K96	0.200	143	0%	218	23.4%	1	0%	-	-	-	NULL
DYRK3	8444	genome.wustl.edu	37	1	206821546	206821546	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003582.2	+1	reviewed	p.D335N	1.000	112	0%	117	21.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
DYRK3	8444	genome.wustl.edu	37	1	206821558	206821558	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003582.2	+1	reviewed	p.E339*	1.000	106	0%	118	54.2%	0	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
DYRK3	8444	genome.wustl.edu	37	1	206821626	206821626	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003582.2	+1	reviewed	p.F361	0.482	82	0%	98	38.8%	1	0%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
DYRK3	8444	genome.wustl.edu	37	1	206821892	206821892	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003582.2	+1	reviewed	p.R450H	1.000	51	0%	64	37.5%	4	25%	probably_damaging(0.969)	deleterious(0.01)	deleterious(0.817)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
IL10	3586	genome.wustl.edu	37	1	206944303	206944303	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000572.2	-1	reviewed	p.V109	1.000	156	0%	286	43.7%	1	0%	-	-	-	superfamily_4-helical cytokines,HMMPfam_IL10,HMMSmart_SM00188
FAIM3	9214	genome.wustl.edu	37	1	207087293	207087293	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001142472.1	-1	validated	p.V62I	0.998	75	0%	162	45.7%	1	0%	possibly_damaging(0.824)	tolerated(0.43)	neutral(0.326)	HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
FCAMR	83953	genome.wustl.edu	37	1	207134251	207134251	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000324852	-1	known	p.E324*	0.005	220	0%	303	40.3%	0	-	-	-	-	NULL
YOD1	55432	genome.wustl.edu	37	1	207222905	207222905	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018566.3	-1	validated	p.V169	0.753	178	0%	202	49%	5	60%	-	-	-	HMMPfam_OTU,superfamily_Cysteine proteinases
PFKFB2	5208	genome.wustl.edu	37	1	207245617	207245617	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006212.2	+1	reviewed	p.S473	1.000	97	0%	153	36.6%	3	0%	-	-	-	NULL
CR2	1380	genome.wustl.edu	37	1	207658858	207658858	+	Nonsense_Mutation	SNP	C	C	T	rs185689791	by1000genomes	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001006658.2	+1	reviewed	p.R1080*	0.014	92	0%	131	42%	0	-	-	-	-	NULL
CR1	1378	genome.wustl.edu	37	1	207753757	207753757	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000651.4	+1	reviewed	p.C1703	0.999	160	0%	192	40.1%	0	-	-	-	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
PLXNA2	5362	genome.wustl.edu	37	1	208315711	208315711	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_025179.3	-1	reviewed	p.I490T	0.996	59	0%	56	42.9%	12	41.6%	benign(0)	tolerated(0.21)	neutral(0.044)	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain
DIEXF	27042	genome.wustl.edu	37	1	210024637	210024637	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014388.5	+1	validated	p.A706T	0.994	157	0%	217	39.6%	14	28.5%	benign(0.106)	tolerated(0.28)	neutral(0.040)	HMMPfam_DUF1253
SYT14	255928	genome.wustl.edu	37	1	210329130	210329130	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_153262.2	+1	validated	p.S410Y	1.000	276	0.4%	330	38.5%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
KCNH1	3756	genome.wustl.edu	37	1	210857239	210857239	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_172362.2	-1	reviewed	p.A785V	1.000	45	0%	53	43.4%	0	-	benign(0.078)	tolerated(0.14)	neutral(0.255)	NULL
KCNH1	3756	genome.wustl.edu	37	1	211307231	211307231	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_172362.2	-1	reviewed	p.E19D	1.000	79	0%	111	38.7%	0	-	benign(0.259)	tolerated(0.45)	neutral(0.039)	NULL
TRAF5	7188	genome.wustl.edu	37	1	211542866	211542866	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001033910.2	+1	reviewed	p.L288F	0.998	223	0%	272	43%	1	0%	benign(0)	tolerated(0.81)	neutral(0.001)	NULL
FAM71A	149647	genome.wustl.edu	37	1	212799534	212799534	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_153606.3	+1	validated	p.R439C	0.002	62	0%	99	43.4%	0	-	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	NULL
TATDN3	128387	genome.wustl.edu	37	1	212968440	212968440	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001042552.2	+1	validated	p.L24V	1.000	495	0.2%	584	43.5%	12	33.3%	possibly_damaging(0.729)	tolerated(0.14)	deleterious(0.515)	HMMPfam_TatD_DNase,superfamily_Metallo-dependent hydrolases
FLVCR1	28982	genome.wustl.edu	37	1	213061290	213061290	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000419102	+1	known	p.S217*	1.000	642	0%	792	44.2%	3	66.6%	benign(0.047)	tolerated(0.31)	neutral(0.030)	superfamily_MFS general substrate transporter
ANGEL2	90806	genome.wustl.edu	37	1	213170562	213170562	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_144567.3	-1	validated	p.R473Q	0.994	277	0%	305	40%	10	40%	benign(0.269)	tolerated(0.28)	neutral(0.060)	HMMPfam_Exo_endo_phos,superfamily_DNase I-like
RPS6KC1	26750	genome.wustl.edu	37	1	213277900	213277900	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012424.3	+1	validated	p.D123Y	1.000	271	0%	357	47.6%	3	33.3%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain
CENPF	1063	genome.wustl.edu	37	1	214816171	214816171	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016343.3	+1	reviewed	p.R1497I	0.012	86	0%	112	18.8%	8	12.5%	benign(0.056)	tolerated(0.06)	neutral(0.326)	NULL
CENPF	1063	genome.wustl.edu	37	1	214818691	214818691	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016343.3	+1	reviewed	p.E1926	0.016	61	0%	66	21.2%	11	27.2%	-	-	-	NULL
CENPF	1063	genome.wustl.edu	37	1	214825104	214825104	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016343.3	+1	reviewed	p.D2679N	0.982	209	0%	245	42%	12	25%	probably_damaging(0.991)	tolerated(0.95)	neutral(0.444)	NULL
USH2A	7399	genome.wustl.edu	37	1	215916640	215916640	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_206933.2	-1	reviewed	p.V3809	0.991	99	0%	178	48.3%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
USH2A	7399	genome.wustl.edu	37	1	215990376	215990376	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_206933.2	-1	reviewed	p.S3178Y	0.000	109	0%	149	40.3%	0	-	benign(0)	deleterious(0.04)	neutral(0.349)	HMMSmart_SM00060,superfamily_Fibronectin type III
USH2A	7399	genome.wustl.edu	37	1	216017715	216017715	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_206933.2	-1	reviewed	p.K3060T	0.954	187	0%	275	26.2%	0	-	benign(0.174)	tolerated(0.25)	neutral(0.053)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
USH2A	7399	genome.wustl.edu	37	1	216040513	216040513	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_206933.2	-1	reviewed	e43-1	1.000	72	0%	142	43%	0	-	-	-	-	-
USH2A	7399	genome.wustl.edu	37	1	216051103	216051103	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_206933.2	-1	reviewed	p.S2893N	1.000	421	0%	484	45.7%	0	-	probably_damaging(1)	tolerated(0.23)	deleterious(0.541)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
USH2A	7399	genome.wustl.edu	37	1	216062187	216062187	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_206933.2	-1	reviewed	p.A2602T	1.000	136	0%	199	15.1%	0	-	possibly_damaging(0.881)	deleterious(0.05)	deleterious(0.689)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
USH2A	7399	genome.wustl.edu	37	1	216074160	216074160	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_206933.2	-1	reviewed	p.A2463V	1.000	167	0.6%	180	38.9%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
USH2A	7399	genome.wustl.edu	37	1	216420362	216420362	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_206933.2	-1	reviewed	p.C792G	0.992	201	0%	304	42.8%	0	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,superfamily_Concanavalin A-like lectins/glucanases,superfamily_EGF/Laminin
ESRRG	2104	genome.wustl.edu	37	1	216850783	216850783	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001438.2	-1	validated	p.S36L	1.000	111	0.9%	195	46.2%	15	53.3%	benign(0.006)	deleterious(0.01)	neutral(0.406)	NULL
GPATCH2	55105	genome.wustl.edu	37	1	217793734	217793734	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018040.2	-1	provisional	p.R55Q	1.000	120	0%	166	46.4%	10	50%	probably_damaging(0.989)	tolerated(0.1)	deleterious(0.726)	NULL
SPATA17	128153	genome.wustl.edu	37	1	217947771	217947771	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_138796.2	+1	provisional	p.K205N	0.000	116	0%	135	46.7%	6	50%	benign(0.014)	tolerated(0.42)	neutral(0.015)	NULL
SLC30A10	55532	genome.wustl.edu	37	1	220100482	220100482	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000356609	-1	known	p.L215P	1.000	300	0%	333	45%	0	-	benign(0)	tolerated(0.15)	neutral(0.241)	NULL
EPRS	2058	genome.wustl.edu	37	1	220156644	220156644	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004446.2	-1	reviewed	p.F1063V	1.000	144	0%	160	53.1%	13	61.5%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_tRNA-synt_2b,superfamily_SSF55681
IARS2	55699	genome.wustl.edu	37	1	220273983	220273983	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018060.3	+1	validated	p.R181I	1.000	137	0%	164	39%	3	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_tRNA-synt_1,superfamily_Nucleotidylyl transferase
MARK1	4139	genome.wustl.edu	37	1	220804392	220804392	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018650.3	+1	validated	p.R309*	1.000	245	0%	350	43.4%	2	50%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
MARK1	4139	genome.wustl.edu	37	1	220805615	220805615	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018650.3	+1	validated	p.V361D	1.000	213	0%	250	44.8%	1	0%	possibly_damaging(0.541)	deleterious(0)	deleterious(0.628)	HMMPfam_UBA,HMMSmart_SM00165
MARK1	4139	genome.wustl.edu	37	1	220808827	220808827	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018650.3	+1	validated	p.R411I	1.000	182	0%	244	47.1%	1	100%	probably_damaging(0.953)	deleterious(0.04)	deleterious(0.746)	NULL
HHIPL2	79802	genome.wustl.edu	37	1	222697034	222697034	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024746.3	-1	validated	p.R603Q	1.000	183	0%	247	46.2%	1	100%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	superfamily_Quino_gluc_DH
HHIPL2	79802	genome.wustl.edu	37	1	222716939	222716939	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024746.3	-1	validated	p.R305Q	0.999	111	0%	118	89%	0	-	probably_damaging(1)	tolerated(0.17)	deleterious(0.559)	superfamily_Quino_gluc_DH
MIA3	375056	genome.wustl.edu	37	1	222801141	222801141	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_198551.2	+1	validated	p.F193	0.032	113	0.9%	103	38.8%	1	0%	-	-	-	NULL
MIA3	375056	genome.wustl.edu	37	1	222801298	222801298	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_198551.2	+1	validated	p.N246D	0.996	116	0%	140	15.7%	3	0%	possibly_damaging(0.647)	deleterious(0.01)	deleterious(0.633)	NULL
MIA3	375056	genome.wustl.edu	37	1	222803584	222803584	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_198551.2	+1	validated	p.E1008K	0.057	113	0%	143	16.1%	7	28.5%	possibly_damaging(0.907)	tolerated(0.09)	deleterious(0.657)	NULL
MIA3	375056	genome.wustl.edu	37	1	222833086	222833086	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_198551.2	+1	validated	p.R1606H	1.000	298	0.3%	328	44.2%	13	46.1%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	NULL
C1orf65	164127	genome.wustl.edu	37	1	223567258	223567258	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152610.2	+1	validated	p.P147	0.708	9	0.000	12	0.583	0	-	-	-	-	NULL
TP53BP2	7159	genome.wustl.edu	37	1	223989907	223989907	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001031685.2	-1	reviewed	p.D379G	0.998	98	0%	134	43.3%	4	25%	possibly_damaging(0.951)	tolerated(0.13)	deleterious(0.647)	NULL
TP53BP2	7159	genome.wustl.edu	37	1	224002031	224002031	+	Missense_Mutation	SNP	C	C	T	rs180972416	by1000genomes	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001031685.2	-1	reviewed	p.R67Q	0.977	127	0%	146	11.6%	11	0%	probably_damaging(0.998)	tolerated(0.13)	deleterious(0.727)	NULL
CNIH3	149111	genome.wustl.edu	37	1	224804925	224804925	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152495.1	+1	provisional	p.C17R	1.000	294	0%	357	21.3%	0	-	benign(0.029)	tolerated(0.2)	neutral(0.051)	HMMPfam_Cornichon
DNAH14	127602	genome.wustl.edu	37	1	225428442	225428442	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001373.1	+1	validated	p.S2200	0.000	284	0%	335	46.9%	0	-	-	-	-	NULL
DNAH14	127602	genome.wustl.edu	37	1	225521159	225521159	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001373.1	+1	validated	p.S3251Y	0.985	187	0%	252	48.8%	0	-	possibly_damaging(0.852)	deleterious(0)	deleterious(0.772)	NULL
DNAH14	127602	genome.wustl.edu	37	1	225586269	225586269	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000428003	+1	known	p.R115*	0.234	313	0%	396	42.7%	1	0%	-	-	-	HMMPfam_Dynein_heavy
TMEM63A	9725	genome.wustl.edu	37	1	226062033	226062033	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014698.2	-1	validated	p.R74I	0.997	114	0%	164	43.9%	38	57.8%	benign(0.062)	tolerated(0.47)	neutral(0.015)	NULL
C1orf55	163859	genome.wustl.edu	37	1	226182983	226182983	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000366817	-1	known	p.F23S	0.008	282	0%	368	40.2%	12	41.6%	benign(0.099)	-	-	NULL
MIXL1	83881	genome.wustl.edu	37	1	226413318	226413318	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_031944.1	+1	provisional	p.T168	0.000	111	0%	142	45.1%	0	-	-	-	-	NULL
PSEN2	5664	genome.wustl.edu	37	1	227075812	227075812	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000447.2	+1	reviewed	p.I173	1.000	360	0%	414	45.2%	71	38%	-	-	-	HMMPfam_Presenilin,HMMSmart_SM00730
CDC42BPA	8476	genome.wustl.edu	37	1	227203857	227203857	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003607.3	-1	reviewed	p.S1559Y	1.000	490	0%	624	12.8%	6	16.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_PBD
PRSS38	339501	genome.wustl.edu	37	1	228005171	228005171	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_183062.2	+1	validated	p.V191	0.001	121	0%	158	40.5%	0	-	-	-	-	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
C1orf35	79169	genome.wustl.edu	37	1	228288868	228288868	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024319.2	-1	provisional	p.P252	0.000	125	0%	174	39.1%	55	61.8%	-	-	-	NULL
OBSCN	84033	genome.wustl.edu	37	1	228402664	228402664	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001098623.1	+1	reviewed	p.E565K	0.663	82	0%	96	40.6%	0	-	possibly_damaging(0.807)	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
OBSCN	84033	genome.wustl.edu	37	1	228529188	228529188	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000441106	+1	known	p.R586*	0.009	66	0%	84	39.3%	10	40%	-	-	-	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
URB2	9816	genome.wustl.edu	37	1	229771368	229771368	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014777.2	+1	provisional	p.K336N	0.021	29	0%	42	61.9%	4	75%	benign(0.072)	tolerated(0.48)	neutral(0.015)	NULL
COG2	22796	genome.wustl.edu	37	1	230795218	230795218	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007357.2	+1	reviewed	p.F27	0.995	109	0%	150	52.7%	9	55.5%	-	-	-	HMMPfam_COG2
CAPN9	10753	genome.wustl.edu	37	1	230907779	230907779	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006615.2	+1	reviewed	p.R270I	0.744	98	0%	116	48.3%	5	60%	benign(0.074)	tolerated(0.05)	neutral(0.350)	HMMPfam_Peptidase_C2,HMMSmart_SM00230,superfamily_Cysteine proteinases
C1orf198	84886	genome.wustl.edu	37	1	230979246	230979246	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032800.2	-1	validated	p.E261K	0.167	72	0%	84	45.2%	372	38.1%	probably_damaging(0.995)	tolerated(0.1)	deleterious(0.744)	NULL
C1orf198	84886	genome.wustl.edu	37	1	230979496	230979496	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032800.2	-1	validated	p.D177	0.005	50	0%	54	48.1%	133	48.8%	-	-	-	NULL
ARV1	64801	genome.wustl.edu	37	1	231131683	231131683	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_022786.1	+1	provisional	p.K209R	0.020	156	0%	232	44.8%	23	47.8%	benign(0.001)	tolerated(1)	-	HMMPfam_Arv1
TRIM67	440730	genome.wustl.edu	37	1	231344842	231344842	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001004342.3	+1	validated	p.V657M	1.000	44	0%	91	52.7%	0	-	possibly_damaging(0.935)	deleterious(0)	deleterious(0.825)	HMMPfam_SPRY,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00449
C1orf131	128061	genome.wustl.edu	37	1	231362496	231362496	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152379.2	-1	validated	p.E228*	0.992	387	0%	490	41.4%	1	0%	-	-	-	NULL
GNPAT	8443	genome.wustl.edu	37	1	231401139	231401139	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014236.3	+1	reviewed	p.F223L	1.000	374	0%	429	29.1%	7	14.2%	possibly_damaging(0.924)	tolerated(0.19)	neutral(0.422)	HMMPfam_Acyltransferase,HMMSmart_PlsC,superfamily_SSF69593
GNPAT	8443	genome.wustl.edu	37	1	231406610	231406610	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014236.3	+1	reviewed	p.S462	0.022	167	0%	195	48.2%	44	45.4%	-	-	-	NULL
DISC1	27185	genome.wustl.edu	37	1	231830415	231830415	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018662.2	+1	reviewed	p.S304Y	0.000	27	0%	37	27%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
SIPA1L2	57568	genome.wustl.edu	37	1	232575083	232575083	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020808.3	-1	validated	p.D1268N	0.999	48	0%	87	46%	44	45.4%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
SIPA1L2	57568	genome.wustl.edu	37	1	232601117	232601117	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020808.3	-1	validated	p.P763	0.703	54	0%	54	35.2%	11	27.2%	-	-	-	HMMPfam_Rap_GAP,superfamily_Rap/Ran-GAP (Pfam 02145)
SIPA1L2	57568	genome.wustl.edu	37	1	232649900	232649900	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020808.3	-1	validated	p.D396N	1.000	102	0%	120	42.5%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KIAA1383	54627	genome.wustl.edu	37	1	232942295	232942295	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_019090.2	+1	validated	p.V509A	0.000	134	0%	207	48.3%	5	100%	possibly_damaging(0.459)	tolerated(0.51)	neutral(0.160)	NULL
PCNXL2	80003	genome.wustl.edu	37	1	233353891	233353891	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014801.3	-1	provisional	p.L848	0.997	110	0%	150	42.7%	1	100%	-	-	-	NULL
TARBP1	6894	genome.wustl.edu	37	1	234582703	234582703	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005646.3	-1	reviewed	p.E660D	1.000	198	0%	237	40.5%	6	50%	benign(0.028)	tolerated(0.38)	neutral(0.019)	NULL
ARID4B	51742	genome.wustl.edu	37	1	235357358	235357358	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016374.5	-1	reviewed	p.E699*	1.000	259	0%	314	38.2%	0	-	-	-	-	NULL
TBCE	6905	genome.wustl.edu	37	1	235599906	235599906	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001079515.1	+1	reviewed	p.D316N	0.995	251	0%	336	43.8%	9	33.3%	benign(0.02)	tolerated(0.36)	neutral(0.021)	superfamily_SSF52047
LYST	1130	genome.wustl.edu	37	1	235884202	235884202	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000081.2	-1	reviewed	p.R3107C	1.000	125	0%	193	16.6%	4	25%	probably_damaging(1)	-	-	superfamily_BEACH domain,superfamily_PH domain-like
LYST	1130	genome.wustl.edu	37	1	235891377	235891377	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000081.2	-1	reviewed	p.S3054L	1.000	232	0%	271	44.6%	3	66.6%	possibly_damaging(0.818)	-	-	superfamily_PH domain-like
HEATR1	55127	genome.wustl.edu	37	1	236757352	236757352	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018072.4	-1	validated	p.K385Q	0.014	431	0%	593	42.7%	3	33.3%	benign(0.001)	tolerated(0.49)	neutral(0.011)	NULL
HEATR1	55127	genome.wustl.edu	37	1	236766530	236766530	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018072.4	-1	validated	p.F97V	1.000	227	0%	290	50.3%	10	30%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
RYR2	6262	genome.wustl.edu	37	1	237754056	237754056	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001035.2	+1	reviewed	p.I1308	0.113	187	0%	248	43.5%	0	-	-	-	-	NULL
FMN2	56776	genome.wustl.edu	37	1	240601399	240601399	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020066.4	+1	validated	p.K1650T	1.000	213	0%	272	34.9%	0	-	probably_damaging(0.997)	tolerated(0.13)	deleterious(0.719)	HMMSmart_FH2,HMMPfam_FH2,superfamily_FH2_actin_bd
FMN2	56776	genome.wustl.edu	37	1	240601497	240601497	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020066.4	+1	validated	p.L1683I	1.000	180	0%	200	29%	0	-	benign(0.001)	tolerated(1)	-	HMMSmart_FH2,superfamily_FH2_actin_bd
RGS7	6000	genome.wustl.edu	37	1	240966279	240966279	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002924.4	-1	validated	p.K428	1.000	322	0%	365	47.1%	0	-	-	-	-	HMMPfam_RGS,HMMSmart_RGS,superfamily_Regulat_G_prot_signal_superfam
RGS7	6000	genome.wustl.edu	37	1	241261993	241261993	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002924.4	-1	validated	p.L50I	1.000	285	0%	309	46%	0	-	benign(0.118)	tolerated(0.23)	neutral(0.051)	HMMPfam_DEP,HMMSmart_DEP,superfamily_SSF46785
KMO	8564	genome.wustl.edu	37	1	241755301	241755301	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003679.3	+1	validated	p.S436I	0.106	167	0%	248	47.2%	22	31.8%	benign(0.103)	tolerated(0.13)	neutral(0.261)	NULL
WDR64	128025	genome.wustl.edu	37	1	241959625	241959625	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_144625.4	+1	validated	p.D592N	0.091	185	0%	243	39.9%	0	-	probably_damaging(0.959)	deleterious(0.03)	deleterious(0.767)	NULL
EXO1	9156	genome.wustl.edu	37	1	242024746	242024746	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006027.4	+1	reviewed	p.G328V	1.000	228	0%	218	40.8%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
EXO1	9156	genome.wustl.edu	37	1	242042577	242042577	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006027.4	+1	reviewed	p.E681*	0.008	79	1.3%	75	36%	4	25%	-	-	-	NULL
PLD5	200150	genome.wustl.edu	37	1	242264021	242264021	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152666.1	-1	provisional	p.P343T	0.991	412	0%	490	27.1%	5	20%	benign(0.133)	tolerated(0.29)	neutral(0.040)	HMMPfam_PLDc,HMMSmart_PLDc,superfamily_SSF56024
CEP170	9859	genome.wustl.edu	37	1	243349608	243349608	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014812.2	-1	reviewed	p.K409Q	1.000	365	0%	503	44.7%	5	60%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
AKT3	10000	genome.wustl.edu	37	1	243727145	243727145	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005465.3	-1	reviewed	p.E275D	1.000	307	0%	389	45.8%	1	0%	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
ADSS	159	genome.wustl.edu	37	1	244614960	244614960	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001126.2	-1	reviewed	p.A54T	1.000	9	0.000	29	0.276	65	41.5%	possibly_damaging(0.689)	tolerated(0.35)	neutral(0.267)	HMMPfam_Adenylsucc_synt,HMMSmart_SM00788,superfamily_P-loop containing nucleoside triphosphate hydrolases
HNRNPU-AS1	284702	genome.wustl.edu	37	1	245006276	245006276	+	RNA	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NR_026778.1	-1	predicted	NULL	0.000	38	0%	43	53.5%	0	-	-	-	-	-
HNRNPU	3192	genome.wustl.edu	37	1	245018831	245018831	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_031844.2	-1	reviewed	p.I749	0.995	131	0.8%	159	56%	908	37.3%	-	-	-	NULL
KIF26B	55083	genome.wustl.edu	37	1	245530522	245530522	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018012.3	+1	provisional	p.P284	0.232	62	0%	55	49.1%	5	40%	-	-	-	NULL
SCCPDH	51097	genome.wustl.edu	37	1	246922348	246922348	+	Silent	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016002.2	+1	validated	p.S236	0.846	515	0%	685	44.5%	38	63.1%	-	-	-	HMMPfam_Saccharop_dh
AHCTF1	25909	genome.wustl.edu	37	1	247048970	247048970	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015446.4	-1	validated	p.L829I	1.000	157	0%	220	35%	1	100%	probably_damaging(0.991)	tolerated(0.26)	deleterious(0.478)	NULL
ZNF695	57116	genome.wustl.edu	37	1	247150870	247150870	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020394.3	-1	validated	p.R316I	0.996	93	0%	112	44.6%	0	-	benign(0.167)	tolerated(0.32)	neutral(0.039)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF695	57116	genome.wustl.edu	37	1	247151146	247151146	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020394.3	-1	validated	p.C224Y	0.000	88	0%	119	47.9%	0	-	benign(0)	tolerated(1)	-	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
OR2W5	441932	genome.wustl.edu	37	1	247654839	247654839	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001004698.2	+1	validated	p.R137H	0.142	52	0%	72	11.1%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR14K1	343170	genome.wustl.edu	37	1	247902808	247902808	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000283225	+1	known	p.A298T	0.004	171	0%	244	50.4%	0	-	benign(0.036)	tolerated(0.05)	neutral(0.347)	superfamily_SSF81321
OR14A16	284532	genome.wustl.edu	37	1	247978950	247978950	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001001966.1	-1	provisional	p.L28I	0.000	146	0%	161	49.7%	0	-	probably_damaging(0.989)	deleterious(0.02)	deleterious(0.823)	superfamily_SSF81321
TRIM58	25893	genome.wustl.edu	37	1	248023955	248023955	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015431.3	+1	validated	p.E153*	0.743	174	0%	166	37.3%	0	-	-	-	-	NULL
OR2L8	391190	genome.wustl.edu	37	1	248112668	248112668	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001001963.1	+1	provisional	p.S170Y	0.023	267	0.4%	380	45.3%	0	-	possibly_damaging(0.864)	deleterious(0)	deleterious(0.779)	HMMPfam_7tm_1,superfamily_SSF81321
OR2M2	391194	genome.wustl.edu	37	1	248343836	248343836	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001004688.1	+1	provisional	p.S183	0.000	423	0%	483	46.2%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR2M7	391196	genome.wustl.edu	37	1	248487540	248487540	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001004691.1	-1	provisional	p.E111K	0.001	419	0%	532	28.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321
PGBD2	267002	genome.wustl.edu	37	1	249212425	249212425	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_170725.2	+1	validated	p.D548N	0.688	87	0%	111	39.6%	36	38.8%	possibly_damaging(0.798)	deleterious(0)	deleterious(0.745)	NULL
SH3YL1	26751	genome.wustl.edu	37	2	231054	231054	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015677.2	-1	validated	p.R128K	0.070	330	0%	396	42.9%	25	52%	benign(0)	tolerated(0.49)	neutral(0.011)	NULL
TPO	7173	genome.wustl.edu	37	2	1488484	1488484	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000547.5	+1	reviewed	p.F485L	0.997	45	0%	46	26.1%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_An_peroxidase,superfamily_Heme-dependent peroxidases
TPO	7173	genome.wustl.edu	37	2	1499887	1499887	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000446278	+1	known	p.S186L	0.000	58	0%	86	38.4%	0	-	-	-	-	superfamily_Heme-dependent peroxidases
PXDN	7837	genome.wustl.edu	37	2	1642656	1642656	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012293.1	-1	validated	p.L1390M	0.198	230	0%	282	42.9%	13	0%	benign(0.186)	tolerated(0.1)	neutral(0.304)	NULL
PXDN	7837	genome.wustl.edu	37	2	1653238	1653238	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012293.1	-1	validated	p.E772K	1.000	47	0%	81	48.1%	32	0%	possibly_damaging(0.522)	deleterious(0.01)	deleterious(0.582)	HMMPfam_An_peroxidase,superfamily_Heme-dependent peroxidases
MYT1L	23040	genome.wustl.edu	37	2	1891378	1891378	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015025.2	-1	validated	p.E840*	1.000	168	0%	245	43.7%	0	-	-	-	-	HMMPfam_MYT1,PatternScan_EF_HAND_1
MYT1L	23040	genome.wustl.edu	37	2	1896007	1896007	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015025.2	-1	validated	p.Y693	0.991	15	0%	36	63.9%	0	-	-	-	-	HMMPfam_MYT1
KIDINS220	57498	genome.wustl.edu	37	2	8873636	8873636	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020738.2	-1	validated	p.E1331K	1.000	99	0%	145	30.3%	26	23%	probably_damaging(0.983)	deleterious(0)	deleterious(0.873)	NULL
KIDINS220	57498	genome.wustl.edu	37	2	8873637	8873637	+	Silent	SNP	G	G	A	rs193191007	by1000genomes	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020738.2	-1	validated	p.F1330	0.984	99	0%	145	42.1%	26	53.8%	-	-	-	NULL
MBOAT2	129642	genome.wustl.edu	37	2	9098719	9098719	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_138799.2	-1	validated	p.R43Q	1.000	184	0%	168	39.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TAF1B	9014	genome.wustl.edu	37	2	10059908	10059908	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005680.2	+1	reviewed	p.K508N	1.000	174	0%	173	46.2%	8	50%	possibly_damaging(0.537)	tolerated(0.19)	neutral(0.231)	NULL
GRHL1	29841	genome.wustl.edu	37	2	10105499	10105499	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_198182.2	+1	reviewed	p.D178N	1.000	253	0%	404	46.8%	17	41.1%	possibly_damaging(0.535)	deleterious(0.02)	deleterious(0.564)	HMMPfam_CP2
ATP6V1C2	245973	genome.wustl.edu	37	2	10863099	10863099	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001039362.1	+1	reviewed	p.F42V	1.000	192	0%	216	43.5%	28	57.1%	benign(0.001)	deleterious(0)	neutral(0.445)	HMMPfam_V-ATPase_C
C2orf50	130813	genome.wustl.edu	37	2	11284095	11284095	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_182500.2	+1	validated	p.S116L	0.990	64	0%	94	41.5%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ROCK2	9475	genome.wustl.edu	37	2	11332799	11332799	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004850.3	-1	reviewed	p.E1243*	1.000	231	0%	288	47.6%	0	-	-	-	-	HMMSmart_SM00233,superfamily_PH domain-like
GREB1	9687	genome.wustl.edu	37	2	11735397	11735397	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014668.3	+1	reviewed	p.L573I	1.000	113	0%	136	47.1%	15	73.3%	probably_damaging(0.996)	deleterious(0.03)	deleterious(0.826)	NULL
GREB1	9687	genome.wustl.edu	37	2	11761033	11761033	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014668.3	+1	reviewed	p.I1349	0.847	217	0%	264	43.9%	37	43.2%	-	-	-	NULL
GREB1	9687	genome.wustl.edu	37	2	11772132	11772132	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014668.3	+1	reviewed	p.H1570R	0.998	142	0%	190	15.8%	63	12.6%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
LPIN1	23175	genome.wustl.edu	37	2	11911551	11911551	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_145693.1	+1	reviewed	p.S114	0.000	134	0%	165	52.7%	4	50%	-	-	-	HMMPfam_Lipin_N
LPIN1	23175	genome.wustl.edu	37	2	11922392	11922392	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_145693.1	+1	reviewed	p.S305R	0.002	141	0%	152	42.8%	1	0%	benign(0.022)	tolerated(0.44)	neutral(0.014)	NULL
NBAS	51594	genome.wustl.edu	37	2	15326950	15326950	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000442506	-1	known	p.R1257Q	0.000	361	0%	442	38.7%	52	40.3%	-	-	-	PatternScan_RIBOSOMAL_S14
RAD51AP2	729475	genome.wustl.edu	37	2	17695303	17695303	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001099218.2	-1	provisional	p.E1102*	0.882	201	0%	215	38.6%	0	-	-	-	-	NULL
RAD51AP2	729475	genome.wustl.edu	37	2	17697896	17697896	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001099218.2	-1	provisional	p.R596I	0.000	40	0%	51	47.1%	0	-	possibly_damaging(0.67)	tolerated(0.42)	neutral(0.252)	NULL
SMC6	79677	genome.wustl.edu	37	2	17898414	17898414	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001142286.1	-1	validated	p.Y374	0.993	451	0%	515	10.7%	1	0%	-	-	-	HMMPfam_SMC_N,superfamily_P-loop containing nucleoside triphosphate hydrolases
GEN1	348654	genome.wustl.edu	37	2	17962734	17962734	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001130009.1	+1	validated	p.T752N	0.149	106	0%	133	40.6%	1	0%	probably_damaging(0.997)	deleterious(0.03)	deleterious(0.831)	NULL
KCNS3	3790	genome.wustl.edu	37	2	18113171	18113171	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002252.3	+1	reviewed	p.R299Q	1.000	75	0%	120	39.2%	2	50%	possibly_damaging(0.885)	deleterious(0)	deleterious(0.790)	HMMPfam_Ion_trans,superfamily_SSF81324
NT5C1B	93034	genome.wustl.edu	37	2	18745214	18745214	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001002006.1	-1	validated	p.E561K	1.000	113	0%	161	46%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_5-nucleotidase
TTC32	130502	genome.wustl.edu	37	2	20101548	20101548	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001008237.1	-1	provisional	p.E23A	0.024	155	0%	227	41.9%	7	57.1%	unknown(0)	deleterious(0)	-	superfamily_SSF48452
MATN3	4148	genome.wustl.edu	37	2	20196919	20196919	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002381.4	-1	reviewed	p.N424H	1.000	172	0%	173	45.7%	4	0%	possibly_damaging(0.743)	deleterious(0.01)	deleterious(0.678)	HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_2,superfamily_EGF/Laminin
MATN3	4148	genome.wustl.edu	37	2	20201812	20201812	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002381.4	-1	reviewed	p.G316*	0.974	126	0%	191	49.7%	3	0%	-	-	-	HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,superfamily_EGF/Laminin
LAPTM4A	9741	genome.wustl.edu	37	2	20234127	20234127	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014713.4	-1	reviewed	p.R193Q	1.000	110	0%	178	49.4%	512	37.3%	probably_damaging(0.976)	deleterious(0)	deleterious(0.863)	HMMPfam_Mtp
APOB	338	genome.wustl.edu	37	2	21231324	21231324	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000384.2	-1	reviewed	p.F2806V	0.997	122	0%	170	43.5%	0	-	probably_damaging(0.998)	-	-	NULL
APOB	338	genome.wustl.edu	37	2	21232445	21232445	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000384.2	-1	reviewed	p.Y2432C	0.999	169	0%	181	39.8%	0	-	probably_damaging(1)	-	-	NULL
APOB	338	genome.wustl.edu	37	2	21250912	21250912	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000384.2	-1	reviewed	p.L619M	0.978	169	0%	228	46.9%	0	-	probably_damaging(1)	-	-	superfamily_Lipovitellin-phosvitin complex superhelical domain
ATAD2B	54454	genome.wustl.edu	37	2	23980714	23980714	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017552.1	-1	validated	p.G1218R	1.000	247	0%	299	47.2%	10	40%	benign(0.142)	tolerated(0.55)	neutral(0.019)	NULL
ATAD2B	54454	genome.wustl.edu	37	2	24118785	24118785	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017552.1	-1	validated	p.R91H	1.000	254	0%	365	38.1%	5	80%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
NCOA1	8648	genome.wustl.edu	37	2	24930431	24930431	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003743.4	+1	reviewed	p.S698R	0.997	173	0%	177	40.1%	2	0%	possibly_damaging(0.737)	deleterious(0.01)	deleterious(0.675)	HMMPfam_SRC-1
ADCY3	109	genome.wustl.edu	37	2	25045501	25045501	+	Splice_Site	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004036.3	-1	reviewed	e18-2	1.000	119	0%	193	40.4%	2	50%	-	-	-	-
ADCY3	109	genome.wustl.edu	37	2	25061314	25061314	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004036.3	-1	reviewed	p.S511	1.000	26	0%	46	30.4%	16	6.2%	-	-	-	NULL
ASXL2	55252	genome.wustl.edu	37	2	25978922	25978922	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018263.4	-1	validated	p.S334*	1.000	114	0%	138	52.2%	1	0%	-	-	-	NULL
CCDC164	92749	genome.wustl.edu	37	2	26654762	26654762	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_145038.2	+1	validated	p.L259P	0.985	157	0%	233	46.8%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
OTOF	9381	genome.wustl.edu	37	2	26698885	26698885	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_194248.2	-1	reviewed	p.R963Q	0.999	40	0%	50	20%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
AGBL5	60509	genome.wustl.edu	37	2	27277658	27277658	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021831.5	+1	validated	p.R238C	0.970	148	0%	202	37.6%	36	22.2%	benign(0.002)	tolerated(0.23)	neutral(0.042)	superfamily_Zn-dependent exopeptidases
PREB	10113	genome.wustl.edu	37	2	27357164	27357164	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_013388.4	-1	reviewed	p.K42N	1.000	9	0.000	15	0.333	31	54.8%	probably_damaging(0.999)	tolerated(0.08)	deleterious(0.790)	NULL
TCF23	150921	genome.wustl.edu	37	2	27375564	27375564	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_175769.2	+1	reviewed	p.P158	0.391	120	0%	141	48.2%	0	-	-	-	-	NULL
CAD	790	genome.wustl.edu	37	2	27445793	27445793	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004341.3	+1	reviewed	p.V233I	0.998	111	0%	146	46.6%	10	70%	benign(0)	tolerated(0.65)	neutral(0.003)	HMMPfam_GATase,superfamily_SSF52317
CAD	790	genome.wustl.edu	37	2	27447678	27447678	+	Silent	SNP	G	G	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004341.3	+1	reviewed	p.V440	1.000	190	0%	247	21.1%	4	25%	-	-	-	HMMPfam_CPSase_L_chain,superfamily_PreATP-grasp-like
CAD	790	genome.wustl.edu	37	2	27462205	27462205	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004341.3	+1	reviewed	p.L1754M	1.000	48	0%	71	38%	38	50%	benign(0.208)	tolerated(0.22)	neutral(0.062)	superfamily_Metalo_hydrolase
ZNF513	130557	genome.wustl.edu	37	2	27603339	27603339	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_144631.4	-1	validated	p.V19M	1.000	29	0%	42	35.7%	1	100%	unknown(0)	deleterious(0)	-	NULL
IFT172	26160	genome.wustl.edu	37	2	27671846	27671846	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015662.1	-1	validated	p.R1455Q	0.990	102	0%	132	43.2%	51	62.7%	possibly_damaging(0.582)	tolerated(0.17)	neutral(0.259)	NULL
IFT172	26160	genome.wustl.edu	37	2	27706224	27706224	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015662.1	-1	validated	p.L168I	1.000	297	0%	359	43.5%	15	80%	benign(0.076)	tolerated(0.38)	neutral(0.023)	HMMSmart_SM00320,superfamily_WD40 repeat-like
ZNF512	84450	genome.wustl.edu	37	2	27825393	27825393	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032434.2	+1	validated	p.L245I	0.924	319	0%	354	47.2%	6	50%	probably_damaging(0.998)	tolerated(0.08)	deleterious(0.774)	NULL
CCDC121	79635	genome.wustl.edu	37	2	27850164	27850164	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001142683.2	-1	validated	p.R330I	0.000	201	0%	221	45.7%	0	-	probably_damaging(0.982)	tolerated(0.3)	neutral(0.455)	NULL
SLC4A1AP	22950	genome.wustl.edu	37	2	27892242	27892242	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018158.2	+1	validated	p.R445W	1.000	166	0.6%	237	49.4%	3	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PPP1CB	5500	genome.wustl.edu	37	2	29001835	29001835	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002709.2	+1	reviewed	p.E115D	1.000	279	0.4%	292	40.8%	14	85.7%	benign(0.001)	deleterious(0.05)	neutral(0.345)	HMMPfam_Metallophos,HMMSmart_SM00156,superfamily_Metallo-dependent phosphatases
SPDYA	245711	genome.wustl.edu	37	2	29045260	29045260	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001142634.1	+1	validated	p.N122H	1.000	377	0%	459	45.5%	0	-	probably_damaging(0.975)	tolerated(0.21)	neutral(0.461)	NULL
WDR43	23160	genome.wustl.edu	37	2	29140814	29140814	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015131.1	+1	validated	p.D268N	1.000	232	0.4%	252	40.5%	5	60%	benign(0.094)	tolerated(0.37)	neutral(0.026)	superfamily_WD40_like
FAM179A	165186	genome.wustl.edu	37	2	29237410	29237410	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_199280.2	+1	validated	p.K343Q	0.126	53	0%	90	52.2%	1	0%	possibly_damaging(0.741)	deleterious(0.01)	deleterious(0.677)	NULL
CLIP4	79745	genome.wustl.edu	37	2	29390370	29390370	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024692.4	+1	validated	p.E563*	1.000	269	0%	339	40.7%	1	0%	-	-	-	superfamily_Cap-Gly domain
ALK	238	genome.wustl.edu	37	2	29455216	29455216	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004304.3	-1	reviewed	p.E862D	0.888	106	0%	117	41%	0	-	possibly_damaging(0.445)	tolerated(0.3)	neutral(0.174)	NULL
ALK	238	genome.wustl.edu	37	2	29551310	29551310	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004304.3	-1	reviewed	p.S440	1.000	48	0%	89	11.2%	0	-	-	-	-	HMMSmart_SM00192,superfamily_LDL receptor-like module
LCLAT1	253558	genome.wustl.edu	37	2	30756045	30756045	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_182551.3	+1	validated	p.E115*	1.000	205	0.5%	298	44%	6	16.6%	-	-	-	HMMPfam_Acyltransferase,superfamily_Glycerol-3-phosphate (1)-acyltransferase
CAPN14	440854	genome.wustl.edu	37	2	31424760	31424760	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001145122.1	-1	validated	p.F173L	1.000	112	0%	128	25.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Peptidase_C2,HMMSmart_SM00230,superfamily_Cysteine proteinases
XDH	7498	genome.wustl.edu	37	2	31600058	31600058	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000379.3	-1	reviewed	p.D430Y	1.000	274	0%	338	37.3%	3	0%	benign(0.348)	deleterious(0.01)	deleterious(0.516)	HMMPfam_CO_deh_flav_C,superfamily_CO_deh_flav_C
NLRC4	58484	genome.wustl.edu	37	2	32449622	32449622	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000360906	-1	known	p.E999*	0.984	220	0%	268	46.6%	0	-	-	-	-	superfamily_RNI-like
BIRC6	57448	genome.wustl.edu	37	2	32641122	32641122	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016252.3	+1	reviewed	p.E921D	1.000	103	0%	166	28.9%	0	-	possibly_damaging(0.882)	tolerated(0.15)	deleterious(0.585)	NULL
BIRC6	57448	genome.wustl.edu	37	2	32690221	32690221	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016252.3	+1	reviewed	p.R1782Q	1.000	324	0%	340	41.2%	2	0%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
LTBP1	4052	genome.wustl.edu	37	2	33335648	33335648	+	Splice_Site	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_206943.2	+1	reviewed	e4-1	1.000	218	0%	248	44.4%	0	-	-	-	-	-
LTBP1	4052	genome.wustl.edu	37	2	33413722	33413722	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_206943.2	+1	reviewed	p.R502I	0.982	113	0%	95	45.3%	9	77.7%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
STRN	6801	genome.wustl.edu	37	2	37076610	37076610	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003162.2	-1	validated	p.V778F	1.000	89	0%	120	46.7%	5	80%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
HEATR5B	54497	genome.wustl.edu	37	2	37208730	37208730	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_019024.1	-1	validated	p.R2040Q	1.000	123	0.8%	135	50.4%	12	50%	probably_damaging(0.997)	deleterious(0.02)	deleterious(0.849)	NULL
HEATR5B	54497	genome.wustl.edu	37	2	37208916	37208916	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_019024.1	-1	validated	p.L1978S	1.000	55	0%	92	44.6%	2	50%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	superfamily_ARM repeat
CCDC75	253635	genome.wustl.edu	37	2	37315546	37315546	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_174931.2	+1	validated	p.E4*	1.000	269	0%	282	37.2%	0	-	-	-	-	NULL
EIF2AK2	5610	genome.wustl.edu	37	2	37334619	37334619	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001135651.1	-1	validated	p.E511*	0.942	282	0%	284	40.1%	0	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
EIF2AK2	5610	genome.wustl.edu	37	2	37373999	37373999	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001135651.1	-1	validated	p.K79N	0.000	489	0%	582	39.5%	2	100%	benign(0)	tolerated(1)	-	superfamily_dsRNA-binding domain-like
EIF2AK2	5610	genome.wustl.edu	37	2	37374085	37374085	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001135651.1	-1	validated	p.E51*	0.192	362	0%	464	45.9%	1	100%	-	-	-	HMMPfam_dsrm,HMMSmart_SM00358,superfamily_dsRNA-binding domain-like
PRKD3	23683	genome.wustl.edu	37	2	37487482	37487482	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005813.3	-1	reviewed	p.T644P	1.000	316	0%	381	48%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
QPCT	25797	genome.wustl.edu	37	2	37586917	37586917	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012413.3	+1	reviewed	p.F154	1.000	113	0%	131	22.1%	9	0%	-	-	-	HMMPfam_Peptidase_M28,superfamily_Zn-dependent exopeptidases
CDC42EP3	10602	genome.wustl.edu	37	2	37873326	37873326	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006449.3	-1	reviewed	p.F135	0.146	69	0%	89	49.4%	2	0%	-	-	-	NULL
FAM82A1	151393	genome.wustl.edu	37	2	38202433	38202433	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_144713.3	+1	validated	p.E414*	0.913	257	0%	368	18.8%	0	-	-	-	-	NULL
ARHGEF33	100271715	genome.wustl.edu	37	2	39156109	39156109	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001145451.2	+1	validated	p.R46I	1.000	331	0%	357	40.9%	0	-	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	NULL
ARHGEF33	100271715	genome.wustl.edu	37	2	39186985	39186985	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001145451.2	+1	validated	p.H513Q	0.056	57	0%	82	32.9%	2	0%	possibly_damaging(0.923)	deleterious(0)	deleterious(0.817)	NULL
SLC8A1	6546	genome.wustl.edu	37	2	40655938	40655938	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021097.2	-1	validated	p.L495I	1.000	81	0%	118	37.3%	0	-	possibly_damaging(0.646)	deleterious(0.01)	deleterious(0.632)	HMMPfam_Calx-beta,HMMSmart_SM00237
EML4	27436	genome.wustl.edu	37	2	42472771	42472771	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_019063.3	+1	validated	p.R51H	1.000	237	0%	287	39.4%	12	58.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
EML4	27436	genome.wustl.edu	37	2	42515438	42515438	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_019063.3	+1	validated	p.K398N	0.999	422	0%	532	48.1%	18	16.6%	possibly_damaging(0.534)	deleterious(0.02)	deleterious(0.564)	HMMSmart_SM00320,superfamily_WD40 repeat-like
THADA	63892	genome.wustl.edu	37	2	43655273	43655273	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001083953.1	-1	validated	p.L1342I	0.993	128	0%	187	17.6%	54	22.2%	probably_damaging(1)	tolerated(0.22)	deleterious(0.542)	NULL
DYNC2LI1	51626	genome.wustl.edu	37	2	44023899	44023899	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016008.2	+1	validated	p.R207*	1.000	359	0%	405	45.7%	9	0%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
LRPPRC	10128	genome.wustl.edu	37	2	44204165	44204165	+	Silent	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_133259.3	-1	reviewed	p.S206	0.999	302	0%	386	50%	38	63.1%	-	-	-	HMMPfam_PPR,superfamily_SSF48452
PREPL	9581	genome.wustl.edu	37	2	44586846	44586846	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006036.4	-1	reviewed	p.Q3H	1.000	216	0%	258	45.3%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
EPAS1	2034	genome.wustl.edu	37	2	46605855	46605855	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001430.4	+1	reviewed	p.I501	0.049	204	0%	264	42%	56	26.7%	-	-	-	NULL
PIGF	5281	genome.wustl.edu	37	2	46840918	46840918	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002643.3	-1	reviewed	p.G79R	0.978	194	0%	250	37.2%	5	20%	benign(0)	tolerated(1)	-	HMMPfam_PIG-F
SOCS5	9655	genome.wustl.edu	37	2	46986640	46986640	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014011.4	+1	reviewed	p.S324L	0.996	67	0%	118	12.7%	18	5.5%	benign(0.002)	tolerated(0.06)	neutral(0.323)	NULL
CALM2	805	genome.wustl.edu	37	2	47389720	47389720	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001743.4	-1	validated	p.S39Y	1.000	428	0%	572	47.4%	261	36.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00054,HMMPfam_efhand,superfamily_EF-hand
MSH2	4436	genome.wustl.edu	37	2	47635556	47635556	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000251.1	+1	reviewed	p.Q76H	0.999	123	0%	159	47.2%	7	42.8%	benign(0.259)	tolerated(0.14)	neutral(0.277)	HMMPfam_MutS_I
MSH6	2956	genome.wustl.edu	37	2	48026290	48026290	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000179.2	+1	reviewed	p.D390N	0.998	200	0%	271	42.4%	16	62.5%	benign(0.066)	tolerated(0.13)	neutral(0.257)	NULL
MSH6	2956	genome.wustl.edu	37	2	48027844	48027844	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000179.2	+1	reviewed	p.E908*	1.000	99	0%	112	44.6%	1	0%	-	-	-	HMMSmart_SM00533,superfamily_DNA repair protein MutS domain III
STON1-GTF2A1L	286749	genome.wustl.edu	37	2	48807852	48807852	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_172311.1	+1	reviewed	p.F27C	0.926	147	0%	191	49.7%	1	100%	possibly_damaging(0.744)	deleterious(0)	deleterious(0.718)	NULL
LHCGR	3973	genome.wustl.edu	37	2	48952834	48952834	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000233.3	-1	reviewed	p.L122I	1.000	435	0%	478	24.5%	0	-	possibly_damaging(0.657)	deleterious(0)	deleterious(0.676)	superfamily_L domain-like
FSHR	2492	genome.wustl.edu	37	2	49190735	49190735	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000145.3	-1	reviewed	p.L409I	1.000	169	0%	252	39.3%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
FSHR	2492	genome.wustl.edu	37	2	49216155	49216155	+	Missense_Mutation	SNP	C	C	A	rs111883853	byCluster;byFrequency;by1000genomes	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000145.3	-1	reviewed	p.R162I	1.000	298	0%	393	43.5%	0	-	benign(0.014)	tolerated(0.19)	neutral(0.050)	superfamily_L domain-like
NRXN1	9378	genome.wustl.edu	37	2	50464043	50464043	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001135659.1	-1	reviewed	p.R1184*	1.000	190	0%	210	39%	0	-	-	-	-	superfamily_ConA_like_lec_gl
ERLEC1	27248	genome.wustl.edu	37	2	54035592	54035592	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015701.3	+1	validated	p.R346C	1.000	240	0%	328	36.6%	28	46.4%	possibly_damaging(0.906)	tolerated(0.05)	deleterious(0.705)	superfamily_Mannose 6-phosphate receptor domain,HMMPfam_PRKCSH
GPR75	10936	genome.wustl.edu	37	2	54081282	54081282	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006794.2	-1	validated	p.L204F	0.992	132	0%	189	39.2%	2	50%	benign(0.293)	deleterious(0.03)	neutral(0.455)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
GPR75	10936	genome.wustl.edu	37	2	54081656	54081656	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006794.2	-1	validated	p.D80Y	1.000	75	0%	113	34.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
PSME4	23198	genome.wustl.edu	37	2	54154547	54154547	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014614.2	-1	validated	p.R526I	1.000	240	0%	341	46.3%	4	25%	benign(0.025)	tolerated(0.15)	neutral(0.242)	NULL
EML6	400954	genome.wustl.edu	37	2	55040396	55040396	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001039753.2	+1	validated	p.L75	0.045	176	0%	248	43.1%	0	-	-	-	-	HMMSmart_SM00320,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase
EML6	400954	genome.wustl.edu	37	2	55122110	55122110	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001039753.2	+1	validated	p.R934K	1.000	274	0%	413	39.5%	0	-	probably_damaging(0.988)	tolerated(0.71)	neutral(0.439)	superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase
EML6	400954	genome.wustl.edu	37	2	55130604	55130604	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001039753.2	+1	validated	p.S1125Y	0.918	314	0%	399	13.3%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_WD40 repeat-like
EML6	400954	genome.wustl.edu	37	2	55155458	55155458	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001039753.2	+1	validated	p.H1228	0.728	101	0%	97	18.6%	0	-	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
CCDC88A	55704	genome.wustl.edu	37	2	55539676	55539676	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001135597.1	-1	validated	p.R1324W	1.000	399	0%	474	40.7%	3	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CCDC88A	55704	genome.wustl.edu	37	2	55562111	55562111	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001135597.1	-1	validated	p.E616*	1.000	132	0%	178	41%	1	0%	-	-	-	NULL
CCDC88A	55704	genome.wustl.edu	37	2	55566697	55566697	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001135597.1	-1	validated	p.K474T	1.000	443	0%	541	39.7%	0	-	benign(0.007)	tolerated(0.42)	neutral(0.014)	NULL
CCDC104	112942	genome.wustl.edu	37	2	55750887	55750887	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_080667.5	+1	validated	p.E71*	1.000	233	0%	258	41.5%	32	15.6%	-	-	-	NULL
FANCL	55120	genome.wustl.edu	37	2	58392950	58392950	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001114636.1	-1	reviewed	p.F205	1.000	332	0%	433	43.2%	5	20%	-	-	-	HMMPfam_WD-3
PAPOLG	64895	genome.wustl.edu	37	2	61021874	61021874	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_022894.2	+1	reviewed	p.D673	0.001	262	0%	304	19.1%	3	66.6%	-	-	-	NULL
C2orf74	339804	genome.wustl.edu	37	2	61389980	61389980	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001143959.1	+1	validated	p.F40	0.000	131	0.8%	217	23%	2	50%	-	-	-	NULL
USP34	9736	genome.wustl.edu	37	2	61415350	61415350	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014709.3	-1	validated	p.L3510F	1.000	83	0%	120	40.8%	44	22.7%	probably_damaging(0.959)	deleterious(0)	deleterious(0.847)	NULL
USP34	9736	genome.wustl.edu	37	2	61492647	61492647	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014709.3	-1	validated	p.R1888H	1.000	187	0%	217	42.9%	12	41.6%	probably_damaging(1)	-	-	superfamily_Cysteine proteinases
USP34	9736	genome.wustl.edu	37	2	61515949	61515949	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014709.3	-1	validated	p.D1538N	1.000	138	0%	172	40.1%	7	42.8%	probably_damaging(0.995)	-	-	NULL
USP34	9736	genome.wustl.edu	37	2	61597701	61597701	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014709.3	-1	validated	p.E364*	1.000	149	0%	177	46.3%	6	0%	-	-	-	NULL
XPO1	7514	genome.wustl.edu	37	2	61709539	61709539	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003400.3	-1	reviewed	p.K983T	1.000	219	0%	313	46%	49	46.9%	benign(0)	tolerated(0.48)	neutral(0.011)	HMMPfam_CRM1_C,superfamily_ARM-type_fold
XPO1	7514	genome.wustl.edu	37	2	61715367	61715367	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003400.3	-1	reviewed	p.R749Q	1.000	171	1.2%	224	42%	31	41.9%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_CRM1_C,superfamily_ARM-type_fold
XPO1	7514	genome.wustl.edu	37	2	61719793	61719793	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003400.3	-1	reviewed	p.K492R	1.000	131	0%	155	41.3%	56	37.5%	benign(0)	tolerated(0.29)	neutral(0.029)	superfamily_ARM-type_fold
FAM161A	84140	genome.wustl.edu	37	2	62067512	62067512	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032180.2	-1	validated	p.E209D	0.861	389	0%	529	41.6%	1	0%	possibly_damaging(0.535)	tolerated(0.33)	neutral(0.205)	NULL
EHBP1	23301	genome.wustl.edu	37	2	63272233	63272233	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015252.3	+1	reviewed	p.E1175K	1.000	22	0%	33	51.5%	31	25.8%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
MDH1	4190	genome.wustl.edu	37	2	63824540	63824540	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000421012	+1	known	p.S55L	0.981	88	0%	138	15.9%	140	10%	unknown(0)	deleterious(0.04)	-	NULL
UGP2	7360	genome.wustl.edu	37	2	64113478	64113478	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006759.3	+1	reviewed	p.G293R	1.000	135	0%	172	48.3%	49	40.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_UDPGP,superfamily_Nucleotide-diphospho-sugar transferases
RAB1A	5861	genome.wustl.edu	37	2	65318185	65318185	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004161.4	-1	reviewed	p.R74*	1.000	264	0%	315	41%	124	3.2%	-	-	-	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMSmart_SM00177,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
CNRIP1	25927	genome.wustl.edu	37	2	68521069	68521069	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015463.2	-1	reviewed	p.F140L	1.000	184	0%	225	40.4%	13	0%	benign(0.142)	tolerated(0.76)	neutral(0.013)	NULL
ARHGAP25	9938	genome.wustl.edu	37	2	69009444	69009444	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001007231.2	+1	validated	p.I114S	1.000	114	0%	183	42.1%	0	-	possibly_damaging(0.583)	deleterious(0)	deleterious(0.645)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
ARHGAP25	9938	genome.wustl.edu	37	2	69046293	69046293	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001007231.2	+1	validated	p.R347G	1.000	61	0%	78	28.2%	8	0%	possibly_damaging(0.611)	tolerated(0.66)	neutral(0.214)	HMMSmart_SM00324,superfamily_GTPase activation domain GAP
BMP10	27302	genome.wustl.edu	37	2	69098352	69098352	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014482.1	-1	reviewed	p.D47N	1.000	184	0%	209	44.5%	0	-	possibly_damaging(0.926)	deleterious(0.01)	deleterious(0.780)	NULL
GFPT1	2673	genome.wustl.edu	37	2	69556856	69556856	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002056.2	-1	reviewed	p.E501	0.996	224	0%	249	26.1%	81	29.6%	-	-	-	superfamily_SSF53697
AAK1	22848	genome.wustl.edu	37	2	69757231	69757231	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014911.3	-1	reviewed	p.L260	1.000	217	0%	249	42.6%	4	75%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
ANXA4	307	genome.wustl.edu	37	2	70015272	70015272	+	Silent	SNP	C	C	T	rs187492712	by1000genomes	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001153.3	+1	reviewed	p.L32	0.000	92	0%	155	48.4%	191	49.7%	-	-	-	superfamily_Annexin,HMMPfam_Annexin
ANXA4	307	genome.wustl.edu	37	2	70033559	70033559	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001153.3	+1	reviewed	p.E79K	0.997	154	0%	231	39%	233	50.6%	possibly_damaging(0.72)	deleterious(0.05)	deleterious(0.607)	superfamily_Annexin,PatternScan_ANNEXIN,HMMPfam_Annexin,HMMSmart_ANX
MXD1	4084	genome.wustl.edu	37	2	70164428	70164428	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002357.2	+1	reviewed	p.R127Q	0.999	92	0%	101	51.5%	11	27.2%	probably_damaging(1)	tolerated(0.22)	deleterious(0.542)	superfamily_HLH_basic
CD207	50489	genome.wustl.edu	37	2	71058271	71058271	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015717.2	-1	validated	p.K299N	0.000	343	0%	430	47.4%	0	-	benign(0.096)	tolerated(0.1)	neutral(0.293)	HMMPfam_Lectin_C,HMMSmart_CLECT,superfamily_C-type_lectin_fold,PatternScan_C_TYPE_LECTIN_1
MPHOSPH10	10199	genome.wustl.edu	37	2	71360546	71360546	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005791.1	+1	reviewed	p.K203T	0.969	277	0%	302	47.7%	7	14.2%	benign(0.019)	tolerated(0.15)	neutral(0.242)	HMMPfam_Mpp10
ZNF638	27332	genome.wustl.edu	37	2	71577101	71577101	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001014972.1	+1	reviewed	p.S339	0.945	187	0%	232	39.2%	8	50%	-	-	-	NULL
ZNF638	27332	genome.wustl.edu	37	2	71591296	71591296	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001014972.1	+1	reviewed	p.R544Q	1.000	177	0%	232	36.2%	15	46.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DYSF	8291	genome.wustl.edu	37	2	71825803	71825803	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001130987.1	+1	reviewed	p.I1228	1.000	62	0%	85	36.5%	5	0%	-	-	-	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
EXOC6B	23233	genome.wustl.edu	37	2	72707858	72707858	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015189.1	-1	validated	p.T563P	1.000	165	0%	245	38.8%	2	0%	possibly_damaging(0.945)	deleterious(0.02)	deleterious(0.772)	HMMPfam_Sec15
EXOC6B	23233	genome.wustl.edu	37	2	72725638	72725638	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015189.1	-1	validated	p.E428*	1.000	274	0%	355	42.5%	0	-	-	-	-	NULL
RAB11FIP5	26056	genome.wustl.edu	37	2	73315682	73315682	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015470.2	-1	validated	p.R355H	1.000	26	0%	17	70.6%	3	0%	probably_damaging(0.999)	tolerated(0.11)	deleterious(0.762)	NULL
CCT7	10574	genome.wustl.edu	37	2	73477523	73477523	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006429.3	+1	reviewed	p.R387Q	1.000	48	0%	79	53.2%	382	51%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like,superfamily_GroEL-intermediate domain like
ALMS1	7840	genome.wustl.edu	37	2	73681183	73681183	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015120.4	+1	reviewed	p.V2509A	1.000	103	1%	145	51%	2	50%	possibly_damaging(0.94)	deleterious(0)	deleterious(0.830)	NULL
ALMS1	7840	genome.wustl.edu	37	2	73799932	73799932	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015120.4	+1	reviewed	p.S3642Y	0.995	129	0%	188	40.4%	9	55.5%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
C2orf78	388960	genome.wustl.edu	37	2	74042486	74042486	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001080474.1	+1	predicted	p.L379R	0.001	65	0%	78	35.9%	0	-	possibly_damaging(0.462)	tolerated(0.17)	neutral(0.210)	NULL
WDR54	84058	genome.wustl.edu	37	2	74650048	74650048	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032118.2	+1	provisional	p.R92*	0.123	200	0%	268	44.8%	14	0%	-	-	-	superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase
MOGS	7841	genome.wustl.edu	37	2	74688547	74688547	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006302.2	-1	reviewed	p.N790S	1.000	50	0%	46	50%	218	44%	benign(0.35)	deleterious(0.05)	neutral(0.456)	HMMPfam_Glyco_hydro_63,superfamily_Six-hairpin glycosidases
DQX1	165545	genome.wustl.edu	37	2	74745638	74745638	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_133637.2	-1	validated	p.D697Y	0.031	162	0%	180	34.4%	0	-	benign(0.345)	deleterious(0.03)	deleterious(0.473)	NULL
DQX1	165545	genome.wustl.edu	37	2	74746272	74746272	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_133637.2	-1	validated	p.R631Q	0.114	152	0%	197	58.4%	0	-	probably_damaging(0.986)	tolerated(0.62)	neutral(0.439)	HMMPfam_DUF1605
AUP1	550	genome.wustl.edu	37	2	74753947	74753947	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_181575.3	-1	reviewed	p.R405*	0.997	184	0%	279	38.7%	154	46.1%	-	-	-	NULL
DNAH6	1768	genome.wustl.edu	37	2	84771451	84771451	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001370.1	+1	validated	p.E253K	0.274	132	0%	125	43.2%	0	-	benign(0.291)	tolerated(0.25)	neutral(0.127)	NULL
DNAH6	1768	genome.wustl.edu	37	2	84880701	84880701	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001370.1	+1	validated	p.E1779	0.080	108	0%	147	52.4%	0	-	-	-	-	HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases
TGOLN2	10618	genome.wustl.edu	37	2	85553825	85553825	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006464.2	-1	validated	p.E344*	0.114	83	0%	110	24.5%	25	4%	-	-	-	NULL
SH2D6	284948	genome.wustl.edu	37	2	85662803	85662803	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_198482.1	+1	provisional	p.T89	0.565	49	0%	67	46.3%	1	100%	-	-	-	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain
IMMT	10989	genome.wustl.edu	37	2	86371482	86371482	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006839.2	-1	validated	p.R729Q	1.000	233	0%	272	40.8%	65	43%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Mitofilin
MRPL35	51318	genome.wustl.edu	37	2	86437651	86437651	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016622.3	+1	reviewed	p.R143*	1.000	134	0%	146	45.9%	3	100%	-	-	-	HMMPfam_MRP-L35
CHMP3	51652	genome.wustl.edu	37	2	86737492	86737492	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016079.2	-1	reviewed	p.E133*	1.000	155	0%	255	41.6%	54	7.4%	-	-	-	HMMPfam_Snf7
RNF103	7844	genome.wustl.edu	37	2	86847539	86847539	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005667.2	-1	reviewed	p.E94K	1.000	160	1.3%	251	16.3%	16	43.7%	benign(0.011)	tolerated(0.32)	neutral(0.025)	NULL
CD8A	925	genome.wustl.edu	37	2	87016860	87016860	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001768.6	-1	reviewed	p.T139	0.001	5	0.000	25	0.560	7	0%	-	-	-	NULL
LOC730268	730268	genome.wustl.edu	37	2	88037369	88037369	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_002342213.1	+1	model	p.K649Q	1.000	605	0%	792	17.9%	7	14.2%	-	-	-	NULL
FABP1	2168	genome.wustl.edu	37	2	88425856	88425856	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001443.1	-1	reviewed	p.E27*	0.998	94	0%	162	25.3%	0	-	-	-	-	HMMPfam_Lipocalin,superfamily_Lipocalins
C2orf51	200523	genome.wustl.edu	37	2	88828778	88828778	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152670.2	+1	validated	p.Y110C	0.023	164	0%	222	43.2%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
IGKV2D-28	28883	genome.wustl.edu	37	2	89999318	89999318	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000453166	+1	known	p.S40	0.996	170	0%	187	33.7%	0	-	-	-	-	HMMSmart_SM00406,HMMPfam_V-set,superfamily_Immunoglobulin
TEKT4	150483	genome.wustl.edu	37	2	95542385	95542385	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_144705.2	+1	provisional	p.L393	1.000	85	0%	96	40.6%	20	40%	-	-	-	HMMPfam_Tektin
MRPS5	64969	genome.wustl.edu	37	2	95780832	95780832	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_031902.3	-1	reviewed	p.P86T	0.981	260	0%	278	42.4%	34	61.7%	benign(0.029)	tolerated(0.43)	neutral(0.015)	NULL
ZNF514	84874	genome.wustl.edu	37	2	95815475	95815475	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032788.1	-1	provisional	p.R252I	1.000	178	0%	225	53.8%	1	100%	possibly_damaging(0.623)	deleterious(0)	deleterious(0.661)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
KCNIP3	30818	genome.wustl.edu	37	2	96012842	96012842	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001034914.1	+1	reviewed	p.F25	1.000	46	0%	80	40%	1	100%	-	-	-	NULL
TRIM43	129868	genome.wustl.edu	37	2	96260044	96260044	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_138800.1	+1	provisional	p.Q91	0.004	230	0%	317	27.4%	3	33.3%	-	-	-	HMMPfam_zf-B_box,HMMSmart_BBOX,superfamily_SSF57850
LOC400986	400986	genome.wustl.edu	37	2	96581771	96581771	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_001717763.2	-1	model	p.S521	0.000	303	0%	404	41.8%	0	-	-	-	-	NULL
GPAT2	150763	genome.wustl.edu	37	2	96687988	96687988	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000335448	-1	known	p.A826T	0.975	140	0%	169	43.8%	0	-	-	-	-	NULL
SNRNP200	23020	genome.wustl.edu	37	2	96944017	96944017	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014014.3	-1	reviewed	p.E1856	1.000	298	0%	413	41.2%	500	39.2%	-	-	-	HMMPfam_Sec63,HMMSmart_SM00611
SNRNP200	23020	genome.wustl.edu	37	2	96944603	96944603	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014014.3	-1	reviewed	p.T1756I	1.000	219	0%	259	42.9%	395	46.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_P-loop containing nucleoside triphosphate hydrolases
SNRNP200	23020	genome.wustl.edu	37	2	96953604	96953604	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014014.3	-1	reviewed	p.R1121H	1.000	170	0%	201	11.9%	127	12.5%	possibly_damaging(0.847)	deleterious(0.03)	deleterious(0.690)	HMMPfam_Sec63,HMMSmart_SM00611
SNRNP200	23020	genome.wustl.edu	37	2	96958741	96958741	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014014.3	-1	reviewed	p.E710A	1.000	313	0%	355	21.4%	12	41.6%	possibly_damaging(0.916)	deleterious(0.03)	deleterious(0.732)	superfamily_P-loop containing nucleoside triphosphate hydrolases
FER1L5	90342	genome.wustl.edu	37	2	97312145	97312145	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001113382.1	+1	provisional	p.K31N	0.968	248	0%	379	45.1%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
FER1L5	90342	genome.wustl.edu	37	2	97365783	97365783	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001113382.1	+1	provisional	p.F1659L	0.003	39	0%	54	38.9%	0	-	benign(0.367)	tolerated(0.69)	neutral(0.119)	NULL
FAM178B	51252	genome.wustl.edu	37	2	97636511	97636511	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001122646.2	-1	validated	p.S158P	0.000	133	0%	168	45.8%	0	-	possibly_damaging(0.674)	deleterious(0.02)	deleterious(0.623)	NULL
ANKRD36	375248	genome.wustl.edu	37	2	97810406	97810406	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000461153	+1	known	p.S320	0.002	151	0.7%	205	47.3%	1	100%	-	-	-	NULL
ACTR1B	10120	genome.wustl.edu	37	2	98274437	98274437	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005735.3	-1	reviewed	p.I298	0.035	38	0%	43	48.8%	93	43%	-	-	-	HMMPfam_Actin,HMMSmart_ACTIN,superfamily_SSF53067
TMEM131	23505	genome.wustl.edu	37	2	98428945	98428945	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015348.1	-1	validated	p.R601I	1.000	311	0%	379	15.3%	4	0%	probably_damaging(0.992)	tolerated(0.24)	deleterious(0.485)	NULL
TMEM131	23505	genome.wustl.edu	37	2	98525139	98525139	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015348.1	-1	validated	p.S91I	1.000	291	0%	360	44.7%	10	30%	benign(0.189)	tolerated(0.17)	neutral(0.076)	NULL
VWA3B	200403	genome.wustl.edu	37	2	98846533	98846533	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_144992.4	+1	provisional	p.S724Y	0.012	213	0%	234	38%	1	0%	unknown(0)	-	-	NULL
TSGA10	80705	genome.wustl.edu	37	2	99688247	99688247	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_025244.2	-1	validated	p.I343	0.840	196	0%	250	27.6%	2	0%	-	-	-	NULL
MITD1	129531	genome.wustl.edu	37	2	99787079	99787079	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_138798.1	-1	provisional	p.E172*	1.000	235	0%	253	46.6%	5	0%	-	-	-	NULL
EIF5B	9669	genome.wustl.edu	37	2	99999328	99999328	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015904.3	+1	reviewed	p.E739*	1.000	260	0%	353	36.5%	10	0%	-	-	-	HMMPfam_GTP_EFTU,superfamily_P-loop containing nucleoside triphosphate hydrolases
NPAS2	4862	genome.wustl.edu	37	2	101549440	101549440	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002518.3	+1	reviewed	p.E84*	1.000	151	0%	175	38.9%	6	50%	-	-	-	HMMSmart_PAS,HMMPfam_PAS
TBC1D8	11138	genome.wustl.edu	37	2	101624350	101624350	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001102426.1	-1	validated	p.Q1119P	1.000	239	0%	287	54.7%	57	64.9%	possibly_damaging(0.907)	deleterious(0.01)	deleterious(0.766)	NULL
MAP4K4	9448	genome.wustl.edu	37	2	102501736	102501736	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_145686.2	+1	reviewed	p.F1139C	1.000	234	0%	282	39.7%	56	51.7%	unknown(0)	deleterious(0)	-	HMMPfam_CNH,HMMSmart_SM00036
TGFBRAP1	9392	genome.wustl.edu	37	2	105892095	105892095	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001142621.1	-1	validated	p.I529	0.227	209	0%	264	43.2%	13	38.4%	-	-	-	HMMPfam_Vps39_1
RGPD3	653489	genome.wustl.edu	37	2	107041537	107041537	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001144013.1	-1	validated	p.I962M	0.999	1243	0%	1329	27.9%	0	-	benign(0.02)	deleterious(0.05)	neutral(0.346)	NULL
RGPD3	653489	genome.wustl.edu	37	2	107084678	107084678	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001144013.1	-1	validated	p.R23*	0.627	30	0%	78	44.9%	0	-	-	-	-	NULL
RGPD4	285190	genome.wustl.edu	37	2	108443505	108443505	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_182588.2	+1	validated	p.V12	1.000	58	0%	71	39.4%	0	-	-	-	-	NULL
RGPD4	285190	genome.wustl.edu	37	2	108487472	108487472	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_182588.2	+1	validated	p.F1004L	1.000	229	0%	287	34.5%	1	0%	possibly_damaging(0.948)	tolerated(0.15)	deleterious(0.632)	NULL
RGPD4	285190	genome.wustl.edu	37	2	108488346	108488346	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_182588.2	+1	validated	p.F1296V	1.000	479	0%	687	40.6%	3	0%	probably_damaging(0.959)	tolerated(0.22)	neutral(0.445)	NULL
RGPD4	285190	genome.wustl.edu	37	2	108489043	108489043	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_182588.2	+1	validated	p.T1528I	0.964	311	0.3%	365	25.2%	4	0%	benign(0.019)	tolerated(0.08)	neutral(0.301)	NULL
GCC2	9648	genome.wustl.edu	37	2	109087187	109087187	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_181453.3	+1	reviewed	p.N468H	0.995	28	0%	28	64.3%	0	-	possibly_damaging(0.648)	-	-	NULL
LIMS1	3987	genome.wustl.edu	37	2	109276172	109276172	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004987.3	+1	reviewed	p.F36	0.991	305	0%	416	27.2%	98	39.7%	-	-	-	HMMPfam_LIM,HMMSmart_LIM,PatternScan_LIM_DOMAIN_1
RANBP2	5903	genome.wustl.edu	37	2	109374979	109374979	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006267.4	+1	reviewed	p.Q859	0.992	572	0%	686	42.6%	14	50%	-	-	-	NULL
RANBP2	5903	genome.wustl.edu	37	2	109384331	109384331	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006267.4	+1	reviewed	p.D2446Y	0.532	43	0%	35	22.9%	5	0%	probably_damaging(0.965)	-	-	NULL
RANBP2	5903	genome.wustl.edu	37	2	109388278	109388278	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006267.4	+1	reviewed	p.F2657	1.000	322	0%	360	41.1%	13	30.7%	-	-	-	NULL
SEPT10	151011	genome.wustl.edu	37	2	110310678	110310678	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_144710.2	-1	reviewed	p.E383*	1.000	524	0%	630	41.1%	4	25%	-	-	-	NULL
BUB1	699	genome.wustl.edu	37	2	111408297	111408297	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004336.3	-1	reviewed	p.R677C	0.000	82	0%	140	37.1%	49	36.7%	benign(0.007)	deleterious(0.03)	neutral(0.364)	NULL
ACOXL	55289	genome.wustl.edu	37	2	111551709	111551709	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001142807.1	+1	validated	p.A101	0.998	105	0%	200	46.5%	0	-	-	-	-	HMMPfam_Acyl-CoA_dh_M,superfamily_Acyl-CoA dehydrogenase NM domain-like
ANAPC1	64682	genome.wustl.edu	37	2	112545857	112545857	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_022662.2	-1	validated	p.L1585I	0.996	478	0%	639	19.2%	20	0%	possibly_damaging(0.574)	tolerated(0.97)	neutral(0.197)	NULL
TMEM87B	84910	genome.wustl.edu	37	2	112858198	112858198	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032824.2	+1	validated	e15-1	1.000	203	0%	228	35.1%	0	-	-	-	-	-
ZC3H6	376940	genome.wustl.edu	37	2	113089997	113089997	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_198581.2	+1	validated	p.E1168K	1.000	13	0%	13	30.8%	0	-	possibly_damaging(0.482)	tolerated(0.13)	neutral(0.412)	superfamily_Multiheme cytochromes
POLR1B	84172	genome.wustl.edu	37	2	113332817	113332817	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_019014.4	+1	validated	p.F973L	1.000	172	0%	164	48.2%	8	75%	benign(0.123)	deleterious(0)	neutral(0.455)	HMMPfam_RNA_pol_Rpb2_6,superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase
SLC20A1	6574	genome.wustl.edu	37	2	113414669	113414669	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000409095	+1	known	p.G22D	1.000	324	0%	368	38.3%	0	-	unknown(0)	deleterious(0)	-	HMMPfam_PHO4
CBWD2	150472	genome.wustl.edu	37	2	114253267	114253267	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_172003.3	+1	validated	p.E379*	0.985	795	0%	944	14.3%	3	100%	-	-	-	NULL
RABL2A	11159	genome.wustl.edu	37	2	114399682	114399682	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007082.3	+1	reviewed	p.E221D	0.195	153	0%	207	45.9%	2	50%	possibly_damaging(0.868)	deleterious(0)	deleterious(0.782)	NULL
SLC35F5	80255	genome.wustl.edu	37	2	114480713	114480713	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000447673	-1	known	p.S199F	1.000	226	0%	289	41.9%	25	52%	-	-	-	NULL
DPP10	57628	genome.wustl.edu	37	2	116066930	116066930	+	Splice_Site	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020868.3	+1	validated	e2+1	1.000	392	0%	487	41.7%	0	-	-	-	-	-
DPP10	57628	genome.wustl.edu	37	2	116485483	116485483	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020868.3	+1	validated	p.F223Y	1.000	169	0%	180	43.9%	0	-	benign(0.007)	tolerated(0.4)	neutral(0.016)	HMMPfam_DPPIV_N,superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain
DPP10	57628	genome.wustl.edu	37	2	116598352	116598352	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020868.3	+1	validated	p.E737*	1.000	341	0%	410	49.3%	0	-	-	-	-	HMMPfam_Peptidase_S9,superfamily_alpha/beta-Hydrolases
ENSG00000163075	0	genome.wustl.edu	37	2	120383236	120383236	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000443972	+1	known	p.L55S	0.000	220	0%	350	42.9%	2	50%	-	-	-	NULL
PCDP1	200373	genome.wustl.edu	37	2	120388449	120388449	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001029996.3	+1	validated	p.S363Y	0.002	251	0.4%	326	16.6%	1	0%	probably_damaging(0.968)	deleterious(0)	deleterious(0.855)	NULL
PTPN4	5775	genome.wustl.edu	37	2	120718469	120718469	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002830.2	+1	reviewed	p.M740I	1.000	233	0%	310	44.8%	21	42.8%	possibly_damaging(0.873)	deleterious(0.01)	deleterious(0.745)	HMMPfam_Y_phosphatase,HMMSmart_PTPc,superfamily_SSF52799
GLI2	2736	genome.wustl.edu	37	2	121740294	121740294	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005270.4	+1	reviewed	p.F507	0.994	40	0%	51	23.5%	1	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
CLASP1	23332	genome.wustl.edu	37	2	122135076	122135076	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015282.2	-1	validated	p.I1214T	0.817	518	0%	636	42.5%	23	73.9%	benign(0.03)	tolerated(0.98)	neutral(0.002)	superfamily_ARM repeat
CLASP1	23332	genome.wustl.edu	37	2	122220152	122220152	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015282.2	-1	validated	p.E299*	1.000	292	0%	376	43.6%	0	-	-	-	-	superfamily_ARM repeat
CNTNAP5	129684	genome.wustl.edu	37	2	125367442	125367442	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_130773.2	+1	reviewed	p.I606	0.208	56	0%	59	39%	0	-	-	-	-	superfamily_Fibrinogen_a/b/g_C,superfamily_ConA_like_lec_gl
CNTNAP5	129684	genome.wustl.edu	37	2	125405470	125405470	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_130773.2	+1	reviewed	p.G670D	0.023	21	0%	41	53.7%	0	-	benign(0.006)	tolerated(0.5)	neutral(0.010)	superfamily_ConA_like_lec_gl
CNTNAP5	129684	genome.wustl.edu	37	2	125530503	125530503	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_130773.2	+1	reviewed	p.T886	0.286	166	0%	271	48.3%	0	-	-	-	-	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2
CYP27C1	339761	genome.wustl.edu	37	2	127961116	127961116	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001001665.3	-1	reviewed	p.V4I	1.000	237	0%	307	45.6%	0	-	benign(0.046)	tolerated(0.41)	neutral(0.017)	superfamily_Cytochrome P450
MAP3K2	10746	genome.wustl.edu	37	2	128081548	128081548	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006609.3	-1	reviewed	p.E256D	1.000	193	0%	277	24.9%	1	0%	benign(0.003)	tolerated(0.69)	neutral(0.002)	NULL
PROC	5624	genome.wustl.edu	37	2	128185950	128185950	+	Missense_Mutation	SNP	C	C	T	rs121918154		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000312.3	+1	reviewed	p.R272C	0.015	47	0%	40	55%	5	20%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
MYO7B	4648	genome.wustl.edu	37	2	128331584	128331584	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001080527.1	+1	provisional	p.E228K	0.998	104	0%	128	28.1%	0	-	benign(0.155)	deleterious(0.01)	neutral(0.419)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
LIMS2	55679	genome.wustl.edu	37	2	128396954	128396954	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017980.4	-1	validated	p.E334K	1.000	98	0%	108	40.7%	29	17.2%	possibly_damaging(0.49)	deleterious(0.01)	deleterious(0.569)	HMMPfam_LIM
WDR33	55339	genome.wustl.edu	37	2	128520647	128520647	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018383.3	-1	reviewed	p.R238I	1.000	197	0%	200	46.5%	15	53.3%	benign(0.372)	deleterious(0)	deleterious(0.563)	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
WDR33	55339	genome.wustl.edu	37	2	128522104	128522104	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001006622.1	-1	reviewed	p.F308L	1.000	83	0%	113	46.9%	5	60%	benign(0.002)	deleterious(0.01)	neutral(0.406)	NULL
SAP130	79595	genome.wustl.edu	37	2	128699628	128699628	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024545.3	-1	validated	p.N1033	0.111	431	0.2%	488	43.6%	9	44.4%	-	-	-	NULL
POTEF	728378	genome.wustl.edu	37	2	130833023	130833023	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001099771.2	-1	validated	p.K674N	0.044	197	0%	307	44.3%	0	-	possibly_damaging(0.873)	deleterious(0)	deleterious(0.784)	NULL
POTEF	728378	genome.wustl.edu	37	2	130877747	130877747	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001099771.2	-1	validated	p.K114N	0.002	89	0%	144	38.2%	2	0%	benign(0.123)	deleterious(0.01)	neutral(0.416)	superfamily_ANK
SMPD4	55627	genome.wustl.edu	37	2	130913689	130913689	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017951.3	-1	validated	p.S442N	1.000	13	0%	18	38.9%	85	36.4%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
LOC653781	653781	genome.wustl.edu	37	2	131414991	131414991	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_929706.3	+1	model	p.F886	1.000	73	0%	97	7.2%	0	-	-	-	-	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
ARHGEF4	50649	genome.wustl.edu	37	2	131704102	131704102	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015320.2	+1	reviewed	p.I107	0.002	179	0%	248	41.5%	2	0%	-	-	-	NULL
POTEE	445582	genome.wustl.edu	37	2	131976494	131976494	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001083538.1	+1	validated	p.K173N	0.004	530	0%	706	13.2%	1	0%	possibly_damaging(0.819)	deleterious(0)	deleterious(0.754)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
POTEE	445582	genome.wustl.edu	37	2	131984452	131984452	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001083538.1	+1	validated	p.K289N	0.354	1225	0%	1455	24.7%	0	-	possibly_damaging(0.819)	deleterious(0)	deleterious(0.754)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
POTEE	445582	genome.wustl.edu	37	2	132010655	132010655	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001083538.1	+1	validated	p.E587D	0.002	537	0%	755	22.5%	0	-	benign(0.395)	deleterious(0)	deleterious(0.572)	NULL
CCDC74A	90557	genome.wustl.edu	37	2	132285771	132285771	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_138770.1	+1	provisional	p.E76	0.700	54	0%	78	29.5%	11	18.1%	-	-	-	NULL
ZNF806	646915	genome.wustl.edu	37	2	133070512	133070512	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_001724242.2	+1	model	p.Q29R	0.057	325	0%	448	21.9%	0	-	-	-	-	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
NCKAP5	344148	genome.wustl.edu	37	2	133540643	133540643	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_207363.2	-1	validated	p.D1247	0.105	91	0%	105	48.6%	2	50%	-	-	-	NULL
CCNT2	905	genome.wustl.edu	37	2	135676526	135676526	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_058241.1	+1	reviewed	p.L34	0.981	53	0%	85	43.5%	8	12.5%	-	-	-	superfamily_Cyclin-like
CCNT2	905	genome.wustl.edu	37	2	135711614	135711614	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_058241.1	+1	reviewed	p.S530Y	1.000	53	0%	87	48.3%	11	18.1%	possibly_damaging(0.688)	deleterious(0)	deleterious(0.691)	NULL
YSK4	80122	genome.wustl.edu	37	2	135738810	135738810	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_025052.3	-1	validated	p.T1167	0.942	136	0%	178	34.8%	1	100%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
YSK4	80122	genome.wustl.edu	37	2	135738831	135738831	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_025052.3	-1	validated	p.E1160D	0.993	126	0%	172	34.9%	1	0%	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
YSK4	80122	genome.wustl.edu	37	2	135782210	135782210	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_025052.3	-1	validated	p.S3Y	1.000	650	0%	752	45.7%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
RAB3GAP1	22930	genome.wustl.edu	37	2	135878432	135878432	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012233.2	+1	reviewed	p.R231Q	1.000	639	0%	742	41.4%	10	60%	probably_damaging(1)	tolerated(0.14)	deleterious(0.750)	NULL
LCT	3938	genome.wustl.edu	37	2	136567502	136567502	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002299.2	-1	reviewed	p.F805	0.655	120	0%	127	51.2%	0	-	-	-	-	HMMPfam_Glyco_hydro_1,superfamily_Glyco_hydro_cat
LCT	3938	genome.wustl.edu	37	2	136575123	136575123	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002299.2	-1	reviewed	p.D499Y	1.000	36	0%	58	19%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Glyco_hydro_1,superfamily_Glyco_hydro_cat
HNMT	3176	genome.wustl.edu	37	2	138727754	138727754	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006895.2	+1	reviewed	p.E53*	1.000	270	0%	302	42.4%	3	33.3%	-	-	-	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
HNMT	3176	genome.wustl.edu	37	2	138771379	138771379	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006895.2	+1	reviewed	p.Y186	0.952	118	0%	143	48.3%	16	0%	-	-	-	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
ARHGAP15	55843	genome.wustl.edu	37	2	144244967	144244967	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018460.3	+1	validated	p.S243	0.549	169	0%	179	52.5%	0	-	-	-	-	NULL
ZEB2	9839	genome.wustl.edu	37	2	145157064	145157064	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014795.3	-1	reviewed	p.D564Y	1.000	391	0%	533	43.3%	2	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
ORC4	5000	genome.wustl.edu	37	2	148695960	148695960	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002552.2	-1	reviewed	p.L321I	1.000	54	0%	84	41.7%	30	40%	probably_damaging(0.957)	deleterious(0.03)	deleterious(0.765)	NULL
MBD5	55777	genome.wustl.edu	37	2	149220182	149220182	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018328.4	+1	reviewed	p.Q49*	1.000	294	0.3%	378	44.2%	2	100%	-	-	-	HMMPfam_MBD,HMMSmart_SM00391
MBD5	55777	genome.wustl.edu	37	2	149227617	149227617	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018328.4	+1	reviewed	p.S702Y	1.000	129	0%	186	43%	7	57.1%	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	NULL
KIF5C	3800	genome.wustl.edu	37	2	149806436	149806436	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000435030	+1	known	p.I266	1.000	298	0%	344	41.9%	0	-	-	-	-	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
KIF5C	3800	genome.wustl.edu	37	2	149818509	149818509	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000435030	+1	known	p.V331	0.997	266	0.4%	340	47.9%	0	-	-	-	-	HMMSmart_SM00129
RIF1	55183	genome.wustl.edu	37	2	152285358	152285358	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018151.4	+1	reviewed	p.R283C	1.000	422	0%	493	42.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM repeat
RIF1	55183	genome.wustl.edu	37	2	152298448	152298448	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000414861	+1	known	p.S551P	0.999	154	0%	177	39.5%	0	-	-	-	-	NULL
NEB	4703	genome.wustl.edu	37	2	152381773	152381773	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004543.4	-1	reviewed	p.K5691N	1.000	209	0%	311	44.1%	0	-	probably_damaging(0.987)	tolerated(0.06)	deleterious(0.759)	HMMPfam_Nebulin,HMMSmart_SM00227
NEB	4703	genome.wustl.edu	37	2	152388411	152388411	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004543.4	-1	reviewed	e115-1	1.000	389	0%	538	42%	0	-	-	-	-	-
NEB	4703	genome.wustl.edu	37	2	152411447	152411447	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004543.4	-1	reviewed	p.D4775N	1.000	214	0%	302	38.7%	1	100%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Nebulin,HMMSmart_SM00227
NEB	4703	genome.wustl.edu	37	2	152424842	152424842	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004543.4	-1	reviewed	p.R4207	1.000	283	0%	335	43%	0	-	-	-	-	HMMPfam_Nebulin,HMMSmart_SM00227
NEB	4703	genome.wustl.edu	37	2	152475991	152475991	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004543.4	-1	reviewed	p.R3373W	0.930	92	0%	159	44%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Nebulin,HMMSmart_SM00227
NEB	4703	genome.wustl.edu	37	2	152492816	152492816	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000397342	-1	known	p.K1736N	1.000	239	0%	267	42.3%	0	-	probably_damaging(1)	-	-	HMMPfam_Nebulin
NEB	4703	genome.wustl.edu	37	2	152525622	152525622	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004543.4	-1	reviewed	p.E1510D	1.000	287	0%	356	26.4%	0	-	possibly_damaging(0.476)	tolerated(0.32)	neutral(0.181)	HMMPfam_Nebulin,HMMSmart_SM00227
NEB	4703	genome.wustl.edu	37	2	152537333	152537333	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004543.4	-1	reviewed	p.R985C	1.000	399	0%	466	24%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Nebulin,HMMSmart_SM00227
CACNB4	785	genome.wustl.edu	37	2	152711848	152711848	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000726.3	-1	reviewed	p.R304*	1.000	272	0%	372	49.2%	0	-	-	-	-	HMMPfam_Ca_channel_B,HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases
FMNL2	114793	genome.wustl.edu	37	2	153431673	153431673	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_052905.3	+1	reviewed	p.R207I	1.000	284	0%	357	42.3%	10	60%	probably_damaging(0.985)	deleterious(0.01)	deleterious(0.838)	HMMPfam_Drf_GBD
GALNT13	114805	genome.wustl.edu	37	2	155115588	155115588	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_052917.2	+1	validated	p.E304D	1.000	406	0%	418	39.2%	0	-	benign(0.001)	tolerated(0.42)	neutral(0.014)	superfamily_Nucleotide-diphospho-sugar transferases
GALNT13	114805	genome.wustl.edu	37	2	155158059	155158059	+	Silent	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_052917.2	+1	validated	p.V371	0.333	296	0%	386	15.8%	0	-	-	-	-	superfamily_Nucleotide-diphospho-sugar transferases
KCNJ3	3760	genome.wustl.edu	37	2	155711567	155711567	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002239.2	+1	reviewed	p.L416	0.997	76	0%	96	36.5%	0	-	-	-	-	NULL
KCNJ3	3760	genome.wustl.edu	37	2	155711814	155711814	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002239.2	+1	reviewed	p.R499C	1.000	12	0%	30	30%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NR4A2	4929	genome.wustl.edu	37	2	157182707	157182707	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006186.3	-1	reviewed	p.D499N	1.000	67	1.5%	108	40.7%	5	60%	benign(0.023)	deleterious(0.03)	neutral(0.365)	HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain
UPP2	151531	genome.wustl.edu	37	2	158971688	158971688	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001135098.1	+1	validated	p.E143K	0.012	169	0%	242	47.1%	2	0%	benign(0)	tolerated(0.87)	neutral(0.001)	HMMPfam_PNP_UDP_1,superfamily_Purine and uridine phosphorylases
PKP4	8502	genome.wustl.edu	37	2	159433885	159433885	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003628.3	+1	reviewed	p.A79T	1.000	109	0%	130	45.4%	29	58.6%	possibly_damaging(0.816)	tolerated(0.35)	neutral(0.329)	NULL
BAZ2B	29994	genome.wustl.edu	37	2	160181375	160181375	+	Silent	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_013450.2	-1	validated	p.V2100	1.000	135	0%	175	48%	2	0%	-	-	-	HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain,PatternScan_BROMODOMAIN_1
BAZ2B	29994	genome.wustl.edu	37	2	160193530	160193530	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_013450.2	-1	validated	p.R1907C	1.000	197	0%	246	39.8%	13	53.8%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
LY75	4065	genome.wustl.edu	37	2	160706517	160706517	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002349.2	-1	validated	p.S1042R	0.057	319	0%	424	45.5%	8	12.5%	possibly_damaging(0.667)	tolerated(0.31)	neutral(0.263)	HMMSmart_SM00034,superfamily_C-type lectin-like
LY75	4065	genome.wustl.edu	37	2	160737752	160737752	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002349.2	-1	validated	e8-1	1.000	202	0%	207	39.1%	0	-	-	-	-	-
ITGB6	3694	genome.wustl.edu	37	2	161030579	161030579	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000888.3	-1	provisional	p.R222I	0.993	209	0%	309	44.3%	7	42.8%	possibly_damaging(0.857)	tolerated(0.18)	neutral(0.387)	HMMPfam_Integrin_beta,HMMSmart_SM00187,superfamily_vWA-like
PSMD14	10213	genome.wustl.edu	37	2	162267823	162267823	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005805.4	+1	validated	p.R282H	1.000	319	0%	405	46.9%	189	42.8%	benign(0.036)	deleterious(0.02)	neutral(0.385)	NULL
SLC4A10	57282	genome.wustl.edu	37	2	162761411	162761411	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_022058.3	+1	reviewed	p.K551N	0.997	412	0.2%	532	40%	0	-	probably_damaging(0.998)	tolerated(0.73)	deleterious(0.476)	HMMPfam_HCO3_cotransp
DPP4	1803	genome.wustl.edu	37	2	162870910	162870910	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001935.3	-1	reviewed	p.D545Y	1.000	193	0%	242	41.7%	0	-	benign(0.202)	tolerated(0.2)	neutral(0.069)	superfamily_alpha/beta-Hydrolases
FAP	2191	genome.wustl.edu	37	2	163029382	163029382	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004460.2	-1	reviewed	p.F707Y	1.000	198	0.5%	296	48.3%	10	0%	probably_damaging(1)	tolerated(0.19)	deleterious(0.549)	HMMPfam_Peptidase_S9,superfamily_SSF53474
KCNH7	90134	genome.wustl.edu	37	2	163241268	163241268	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033272.2	-1	reviewed	p.G964	0.020	313	0%	466	43.3%	0	-	-	-	-	NULL
FIGN	55137	genome.wustl.edu	37	2	164466645	164466645	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018086.2	-1	validated	p.I566S	1.000	105	0%	113	44.2%	1	0%	probably_damaging(0.959)	deleterious(0)	deleterious(0.847)	HMMSmart_AAA,HMMPfam_AAA,superfamily_SSF52540
GRB14	2888	genome.wustl.edu	37	2	165350965	165350965	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004490.2	-1	reviewed	p.K484N	1.000	422	0%	514	19.1%	1	0%	possibly_damaging(0.748)	deleterious(0)	deleterious(0.719)	HMMPfam_SH2,HMMSmart_SH2,superfamily_SSF55550
GRB14	2888	genome.wustl.edu	37	2	165358780	165358780	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004490.2	-1	reviewed	p.Q363H	1.000	191	0%	202	39.6%	1	100%	possibly_damaging(0.46)	tolerated(0.59)	neutral(0.155)	NULL
COBLL1	22837	genome.wustl.edu	37	2	165559658	165559658	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014900.3	-1	validated	p.F433C	0.008	72	0%	86	34.9%	1	100%	benign(0.132)	tolerated(0.11)	neutral(0.283)	NULL
SCN3A	6328	genome.wustl.edu	37	2	165970353	165970353	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006922.3	-1	reviewed	p.F1214L	1.000	170	0.6%	221	46.2%	0	-	benign(0.016)	tolerated(0.18)	neutral(0.057)	HMMPfam_Na_trans_assoc,superfamily_SSF81324
SCN3A	6328	genome.wustl.edu	37	2	165986560	165986560	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006922.3	-1	reviewed	p.R938C	1.000	359	0%	485	41.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_SSF81324
SCN3A	6328	genome.wustl.edu	37	2	165997322	165997322	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006922.3	-1	reviewed	p.R620*	1.000	188	0.5%	279	48%	0	-	-	-	-	NULL
SCN3A	6328	genome.wustl.edu	37	2	166011072	166011072	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006922.3	-1	reviewed	p.A424P	1.000	275	0%	340	47.9%	0	-	probably_damaging(0.974)	deleterious(0)	deleterious(0.861)	superfamily_SSF81324
SCN2A	6326	genome.wustl.edu	37	2	166201220	166201220	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001040142.1	+1	reviewed	p.S906	1.000	277	0%	367	46.9%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
SCN2A	6326	genome.wustl.edu	37	2	166245192	166245192	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001040142.1	+1	reviewed	p.R1626*	1.000	245	0%	352	40.6%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
SCN2A	6326	genome.wustl.edu	37	2	166245632	166245632	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001040142.1	+1	reviewed	p.I1772	0.956	460	0%	568	41.9%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
GALNT3	2591	genome.wustl.edu	37	2	166613596	166613596	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004482.3	-1	reviewed	p.F451L	1.000	288	0%	417	44.4%	5	80%	probably_damaging(0.985)	deleterious(0)	deleterious(0.877)	superfamily_Nucleotide-diphospho-sugar transferases
TTC21B	79809	genome.wustl.edu	37	2	166785690	166785690	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024753.3	-1	validated	p.F447L	1.000	107	0%	150	51.3%	0	-	benign(0.425)	deleterious(0)	deleterious(0.583)	NULL
SCN1A	6323	genome.wustl.edu	37	2	166852583	166852583	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006920.4	-1	reviewed	p.Y1496*	1.000	571	0%	635	41.4%	0	-	-	-	-	superfamily_SSF81324
SCN1A	6323	genome.wustl.edu	37	2	166892666	166892666	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006920.4	-1	reviewed	p.N1096	1.000	430	0.5%	500	46.2%	0	-	-	-	-	HMMPfam_Na_trans_assoc,superfamily_SSF81324
SCN1A	6323	genome.wustl.edu	37	2	166904240	166904240	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006920.4	-1	reviewed	p.R356I	1.000	241	0%	305	46.9%	0	-	probably_damaging(0.99)	tolerated(0.08)	deleterious(0.742)	HMMPfam_Ion_trans,superfamily_SSF81324
SCN9A	6335	genome.wustl.edu	37	2	167056188	167056188	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002977.3	-1	reviewed	p.V1643A	1.000	470	0%	560	42.5%	1	0%	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
SCN9A	6335	genome.wustl.edu	37	2	167056321	167056321	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002977.3	-1	reviewed	p.R1599*	1.000	238	0%	309	45%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
SCN9A	6335	genome.wustl.edu	37	2	167094709	167094709	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002977.3	-1	reviewed	p.I1221	1.000	118	0%	202	41.6%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
SCN7A	6332	genome.wustl.edu	37	2	167289121	167289121	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002976.2	-1	validated	p.L767I	0.000	307	0%	325	47.1%	0	-	benign(0.018)	tolerated(0.31)	neutral(0.028)	HMMPfam_Na_trans_assoc
XIRP2	129446	genome.wustl.edu	37	2	168100755	168100755	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152381.4	+1	validated	p.I951	0.069	60	0%	71	33.8%	0	-	-	-	-	HMMPfam_Xin
XIRP2	129446	genome.wustl.edu	37	2	168102396	168102396	+	Silent	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152381.4	+1	validated	p.T1498	0.985	95	0%	137	50.4%	0	-	-	-	-	HMMPfam_Xin
XIRP2	129446	genome.wustl.edu	37	2	168103049	168103049	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152381.4	+1	validated	p.T1716I	0.996	245	0.8%	292	40.8%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
XIRP2	129446	genome.wustl.edu	37	2	168106856	168106856	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152381.4	+1	validated	p.G2985E	0.001	38	0%	56	32.1%	0	-	benign(0.012)	tolerated(0.67)	neutral(0.003)	NULL
XIRP2	129446	genome.wustl.edu	37	2	168107285	168107285	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152381.4	+1	validated	p.S3128Y	1.000	135	0%	198	37.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CERS6	253782	genome.wustl.edu	37	2	169571552	169571552	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_203463.1	+1	validated	p.F217L	0.252	499	0%	690	42.5%	6	0%	benign(0)	tolerated(0.87)	neutral(0.001)	HMMPfam_TRAM_LAG1_CLN8,HMMSmart_TLC
G6PC2	57818	genome.wustl.edu	37	2	169763269	169763269	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021176.2	+1	reviewed	p.V179A	1.000	337	0%	459	44.7%	0	-	possibly_damaging(0.882)	deleterious(0.04)	deleterious(0.694)	HMMPfam_PAP2,HMMSmart_SM00014,superfamily_Acid phosphatase/Vanadium-dependent haloperoxidase
ABCB11	8647	genome.wustl.edu	37	2	169842731	169842731	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003742.2	-1	reviewed	p.F324L	0.998	217	0.5%	323	19.5%	0	-	benign(0.001)	tolerated(0.37)	neutral(0.019)	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
LRP2	4036	genome.wustl.edu	37	2	170013914	170013914	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004525.2	-1	reviewed	p.E3996K	0.825	320	0.3%	355	26.5%	0	-	benign(0)	tolerated(1)	-	HMMSmart_EGF
LRP2	4036	genome.wustl.edu	37	2	170058148	170058148	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004525.2	-1	reviewed	p.E2814D	1.000	214	0%	311	41.2%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Ldl_recept_a,HMMSmart_LDLa,superfamily_LDL_rcpt_classA_cys-rich
LRP2	4036	genome.wustl.edu	37	2	170063710	170063710	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004525.2	-1	reviewed	p.L2174M	0.243	82	0%	115	47.8%	0	-	probably_damaging(0.99)	tolerated(0.16)	deleterious(0.501)	HMMPfam_Ldl_recept_b,HMMSmart_LY,superfamily_SSF63825
LRP2	4036	genome.wustl.edu	37	2	170099564	170099564	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004525.2	-1	reviewed	p.S1190Y	0.673	218	0%	264	51.1%	0	-	benign(0.002)	tolerated(1)	-	HMMPfam_Ldl_recept_a,HMMSmart_LDLa,superfamily_LDL_rcpt_classA_cys-rich
LRP2	4036	genome.wustl.edu	37	2	170134300	170134300	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004525.2	-1	reviewed	p.S576Y	0.646	247	0%	336	45.8%	0	-	probably_damaging(0.955)	deleterious(0.02)	deleterious(0.782)	HMMPfam_Ldl_recept_b,HMMSmart_LY,superfamily_Grow_fac_recept,superfamily_SSF63825
PPIG	9360	genome.wustl.edu	37	2	170487353	170487353	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004792.2	+1	validated	p.S206N	1.000	75	0%	76	47.4%	14	35.7%	unknown(0)	deleterious(0.02)	-	NULL
C2orf77	129881	genome.wustl.edu	37	2	170531181	170531181	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001085447.1	-1	validated	p.L189F	0.992	426	0%	527	46.5%	0	-	benign(0.293)	tolerated(0.31)	neutral(0.117)	NULL
KLHL23	151230	genome.wustl.edu	37	2	170592168	170592168	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_144711.4	+1	validated	p.R215Q	1.000	68	1.5%	73	45.2%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_BACK
METTL5	29081	genome.wustl.edu	37	2	170677648	170677648	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000308099	-1	known	p.S119L	1.000	207	0%	267	44.9%	34	38.2%	benign(0.002)	deleterious(0)	neutral(0.445)	NULL
UBR3	130507	genome.wustl.edu	37	2	170917894	170917894	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_172070.3	+1	validated	p.L1654F	1.000	370	0%	409	40.3%	18	44.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
UBR3	130507	genome.wustl.edu	37	2	170937091	170937091	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_172070.3	+1	validated	p.L1816I	1.000	262	0%	345	45.5%	51	25.4%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
GORASP2	26003	genome.wustl.edu	37	2	171806730	171806730	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015530.3	+1	reviewed	p.S122Y	1.000	163	0%	170	42.4%	127	44.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_PDZ domain-like,HMMPfam_GRASP55_65
TLK1	9874	genome.wustl.edu	37	2	171910356	171910356	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012290.4	-1	validated	p.L216R	1.000	312	0%	332	26.8%	6	50%	probably_damaging(0.996)	tolerated(0.08)	deleterious(0.762)	NULL
TLK1	9874	genome.wustl.edu	37	2	171939331	171939331	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012290.4	-1	validated	p.S97I	1.000	245	0%	283	45.2%	10	60%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
SLC25A12	8604	genome.wustl.edu	37	2	172701007	172701007	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003705.3	-1	reviewed	p.E113*	1.000	137	0%	172	55.2%	0	-	-	-	-	HMMSmart_EFh,superfamily_SSF47473
ITGA6	3655	genome.wustl.edu	37	2	173349546	173349546	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001079818.1	+1	reviewed	p.R529I	1.000	52	0%	76	46.1%	6	0%	probably_damaging(0.977)	deleterious(0)	deleterious(0.863)	HMMPfam_Integrin_alpha2,superfamily_Integrin domains
RAPGEF4	11069	genome.wustl.edu	37	2	173882186	173882186	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007023.3	+1	validated	p.G654	0.344	123	0.8%	124	54.8%	2	0%	-	-	-	superfamily_Ras GEF
ZAK	51776	genome.wustl.edu	37	2	174081866	174081866	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016653.2	+1	reviewed	p.E292V	1.000	149	0%	174	48.3%	16	43.7%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
CDCA7	83879	genome.wustl.edu	37	2	174231942	174231942	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_031942.4	+1	reviewed	p.R417Q	1.000	316	0%	408	43.1%	16	31.2%	probably_damaging(0.999)	tolerated(0.09)	deleterious(0.787)	HMMPfam_zf-4CXXC_R1
SP3	6670	genome.wustl.edu	37	2	174820423	174820423	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003111.4	-1	reviewed	p.D273N	1.000	103	1%	141	43.3%	41	36.5%	probably_damaging(0.998)	tolerated(0.07)	deleterious(0.793)	NULL
GPR155	151556	genome.wustl.edu	37	2	175300957	175300957	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001033045.2	-1	validated	p.L834I	1.000	194	0%	216	53.7%	0	-	benign(0.01)	tolerated(0.39)	neutral(0.017)	"HMMSmart_SM00049,superfamily_""Winged helix"" DNA-binding domain"
GPR155	151556	genome.wustl.edu	37	2	175324611	175324611	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001033045.2	-1	validated	p.E589G	1.000	80	0%	118	54.2%	1	0%	possibly_damaging(0.772)	tolerated(0.26)	neutral(0.321)	NULL
LOC100133109	100133109	genome.wustl.edu	37	2	175584853	175584853	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_001716442.2	-1	model	p.S42L	0.994	69	0%	128	19.5%	447	0%	-	-	-	NULL
CHRNA1	1134	genome.wustl.edu	37	2	175619034	175619034	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001039523.2	-1	reviewed	p.I176	0.919	165	0%	245	40.8%	1	0%	-	-	-	HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like,PatternScan_NEUROTR_ION_CHANNEL
MIR10B	406903	genome.wustl.edu	37	2	177015104	177015104	+	RNA	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000385011	+1	known	NULL	1.000	183	0%	296	41.2%	0	-	-	-	-	-
HOXD4	3233	genome.wustl.edu	37	2	177017368	177017368	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014621.2	+1	reviewed	p.R156W	1.000	29	0%	34	44.1%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like
HNRNPA3	220988	genome.wustl.edu	37	2	178083827	178083827	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_194247.2	+1	validated	p.N342D	1.000	210	0%	290	45.5%	252	41.2%	unknown(0)	deleterious(0.03)	-	NULL
NFE2L2	4780	genome.wustl.edu	37	2	178095836	178095836	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006164.3	-1	validated	p.R499W	1.000	431	0%	506	43.1%	34	32.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00338,superfamily_A DNA-binding domain in eukaryotic transcription factors,HMMPfam_bZIP_1
PDE11A	50940	genome.wustl.edu	37	2	178684986	178684986	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016953.3	-1	reviewed	p.L513I	1.000	272	0%	338	42.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_GAF,HMMSmart_SM00065,superfamily_GAF domain-like
OSBPL6	114880	genome.wustl.edu	37	2	179196311	179196311	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_145739.1	+1	reviewed	p.K96N	1.000	453	0%	570	41.4%	0	-	probably_damaging(0.998)	deleterious(0.05)	deleterious(0.820)	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
OSBPL6	114880	genome.wustl.edu	37	2	179247826	179247826	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_145739.1	+1	reviewed	p.T570I	1.000	87	0%	120	48.3%	1	0%	probably_damaging(0.989)	tolerated(0.12)	deleterious(0.700)	HMMPfam_Oxysterol_BP
FKBP7	51661	genome.wustl.edu	37	2	179343014	179343014	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_181342.2	-1	reviewed	p.F71L	1.000	80	0%	128	43%	3	0%	benign(0.021)	tolerated(0.06)	neutral(0.324)	HMMPfam_FKBP_C,superfamily_FKBP-like
TTN	7273	genome.wustl.edu	37	2	179391829	179391829	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_133378.4	-1	reviewed	p.R33394K	1.000	339	0%	478	16.7%	0	-	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179395948	179395948	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000356127	-1	known	p.L32562I	0.962	167	0%	221	43%	0	-	benign(0.007)	-	-	HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179397260	179397260	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_133378.4	-1	reviewed	p.H32126R	0.861	113	0%	156	44.9%	0	-	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179417670	179417670	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000356127	-1	known	p.K27416T	1.000	91	0%	103	32%	0	-	probably_damaging(0.99)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179424301	179424301	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000356127	-1	known	p.T26283N	0.000	210	0.5%	266	38.7%	0	-	benign(0.144)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179431220	179431220	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000356127	-1	known	p.R23977*	1.000	124	0%	184	37%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179435049	179435049	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_133378.4	-1	reviewed	p.L22702S	0.917	133	0%	196	20.4%	0	-	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179435287	179435287	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_133378.4	-1	reviewed	p.E22623*	1.000	143	0%	197	52.3%	0	-	probably_damaging(0.999)	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179438628	179438628	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000356127	-1	known	p.E21507D	1.000	210	0%	259	20.8%	0	-	possibly_damaging(0.862)	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179439045	179439045	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000356127	-1	known	p.R21368S	1.000	153	0%	172	52.3%	0	-	probably_damaging(0.997)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179442184	179442184	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000356127	-1	known	p.A20390S	1.000	144	0%	185	41.1%	1	0%	possibly_damaging(0.9)	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179444390	179444390	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000356127	-1	known	p.D19942Y	1.000	228	0%	374	41.2%	1	100%	probably_damaging(0.964)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179451434	179451434	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_133378.4	-1	reviewed	p.S18830L	0.649	366	0%	516	18%	0	-	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179453945	179453945	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000356127	-1	known	p.R18266Q	1.000	92	0%	148	46.6%	0	-	benign(0.098)	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179455521	179455521	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000356127	-1	known	p.R17741*	1.000	152	0.7%	156	39.1%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179472162	179472162	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000356127	-1	known	p.G15183	0.991	342	0%	511	41.7%	0	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179476841	179476841	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000356127	-1	known	p.R14198Q	1.000	359	0%	512	39.8%	0	-	benign(0.098)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179495967	179495967	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000356127	-1	known	p.V12035G	0.997	168	0%	227	44.5%	0	-	benign(0.014)	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179496966	179496966	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000356127	-1	known	p.S11984L	0.996	306	0%	420	42.6%	1	0%	benign(0.29)	-	-	HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179496967	179496967	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000356127	-1	known	p.S11984P	0.995	300	0%	417	30.5%	1	0%	possibly_damaging(0.539)	-	-	HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179499279	179499279	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000356127	-1	known	p.L11509F	0.992	64	0%	69	44.9%	0	-	benign(0.04)	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179569660	179569660	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000356127	-1	known	p.E8636K	0.998	235	0%	322	41.6%	0	-	unknown(0)	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179570056	179570056	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000356127	-1	known	p.E8573K	1.000	195	0%	233	43.8%	0	-	unknown(0)	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179571252	179571252	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000356127	-1	known	p.N8539K	1.000	293	0%	411	47.2%	0	-	unknown(0)	-	-	HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179577515	179577515	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000356127	-1	known	p.F7835	1.000	103	0%	92	50%	0	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179577814	179577814	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000356127	-1	known	p.R7772K	1.000	75	0%	91	35.2%	0	-	unknown(0)	-	-	HMMSmart_SM00409
TTN	7273	genome.wustl.edu	37	2	179584895	179584895	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000356127	-1	known	p.S6581Y	1.000	176	0%	223	43.5%	0	-	unknown(0)	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179584978	179584978	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000356127	-1	known	p.F6553	1.000	210	0.5%	256	42.6%	0	-	-	-	-	HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179585804	179585804	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000356127	-1	known	p.E6404K	1.000	143	0%	197	39.1%	0	-	unknown(0)	-	-	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179587562	179587562	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000356127	-1	known	p.S6111Y	1.000	122	0%	159	42.1%	0	-	unknown(0)	-	-	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179588290	179588290	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000356127	-1	known	p.K5935N	0.976	224	0%	308	46.8%	0	-	unknown(0)	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179590625	179590625	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000356127	-1	known	p.K5564N	1.000	218	0%	287	23.7%	0	-	unknown(0)	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179592510	179592510	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000356127	-1	known	p.G5355*	1.000	162	0%	229	37.1%	0	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179593264	179593264	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000356127	-1	known	p.F5219	1.000	137	0%	152	41.4%	0	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179596569	179596569	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000356127	-1	known	p.R4434Q	0.981	126	0%	129	40.3%	0	-	unknown(0)	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179597813	179597813	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000356127	-1	known	p.R4120C	1.000	84	0%	117	45.3%	0	-	unknown(0)	-	-	HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179615724	179615724	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_133379.3	-1	reviewed	p.I3801M	0.439	215	0%	274	28.1%	0	-	benign(0.234)	deleterious(0.02)	neutral(0.407)	NULL
TTN	7273	genome.wustl.edu	37	2	179645862	179645862	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_133379.3	-1	reviewed	p.S1170F	1.000	216	0%	262	46.2%	0	-	possibly_damaging(0.741)	-	-	HMMPfam_I-set,superfamily_SSF48726
TTN	7273	genome.wustl.edu	37	2	179647598	179647598	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_133379.3	-1	reviewed	p.R1012Q	1.000	80	0%	111	42.3%	0	-	possibly_damaging(0.465)	-	-	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726
TTN	7273	genome.wustl.edu	37	2	179647680	179647680	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_133379.3	-1	reviewed	p.S985R	1.000	101	0%	173	35.8%	0	-	possibly_damaging(0.539)	-	-	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726
CCDC141	285025	genome.wustl.edu	37	2	179730620	179730620	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_173648.2	-1	provisional	p.K291N	0.998	79	0%	136	39.7%	0	-	probably_damaging(1)	tolerated(0.22)	deleterious(0.542)	NULL
CWC22	57703	genome.wustl.edu	37	2	180843000	180843000	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020943.2	-1	validated	p.I166M	1.000	344	0%	436	43.8%	2	100%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_MIF4G,HMMSmart_SM00543,superfamily_ARM repeat
CERKL	375298	genome.wustl.edu	37	2	182430216	182430216	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001030311.2	-1	reviewed	p.F233	0.000	203	0%	287	42.2%	1	0%	-	-	-	HMMPfam_DAGK_cat
SSFA2	6744	genome.wustl.edu	37	2	182774685	182774685	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001130445.1	+1	validated	p.T491	0.790	122	0%	165	47.9%	100	47%	-	-	-	NULL
DNAJC10	54431	genome.wustl.edu	37	2	183621136	183621136	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018981.1	+1	provisional	p.F583	1.000	204	0%	247	18.2%	95	22.1%	-	-	-	superfamily_Thioredoxin-like,HMMPfam_Thioredoxin
NUP35	129401	genome.wustl.edu	37	2	183995184	183995184	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_138285.3	+1	reviewed	p.D84Y	1.000	103	0%	141	46.1%	11	54.5%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ZNF804A	91752	genome.wustl.edu	37	2	185463727	185463727	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_194250.1	+1	provisional	p.S14N	1.000	99	0%	138	39.9%	0	-	possibly_damaging(0.832)	deleterious(0)	deleterious(0.762)	NULL
ZNF804A	91752	genome.wustl.edu	37	2	185802333	185802333	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_194250.1	+1	provisional	p.R737K	0.000	53	0%	73	50.7%	0	-	possibly_damaging(0.631)	tolerated(0.81)	neutral(0.221)	NULL
FSIP2	401024	genome.wustl.edu	37	2	186671186	186671186	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000424728	+1	known	p.I5718S	0.000	96	0%	138	29%	0	-	benign(0.25)	deleterious(0.01)	neutral(0.431)	NULL
ZSWIM2	151112	genome.wustl.edu	37	2	187712516	187712516	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_182521.2	-1	validated	p.L58I	0.914	115	0%	178	12.4%	0	-	possibly_damaging(0.595)	tolerated(0.32)	neutral(0.230)	HMMPfam_SWIM
COL3A1	1281	genome.wustl.edu	37	2	189862429	189862429	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000090.3	+1	reviewed	p.P625S	0.031	312	0%	325	42.5%	571	0%	unknown(0)	tolerated(0.06)	-	HMMPfam_Collagen
COL5A2	1290	genome.wustl.edu	37	2	189904202	189904202	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000393.3	-1	reviewed	p.D1241N	1.000	68	0%	93	39.8%	33	6%	possibly_damaging(0.86)	-	-	NULL
ASNSD1	54529	genome.wustl.edu	37	2	190532545	190532545	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_019048.2	+1	validated	p.R507H	0.993	287	0%	416	17.1%	46	13%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Asn_synthase,superfamily_Adenine nucleotide alpha hydrolases-like
OSGEPL1	64172	genome.wustl.edu	37	2	190620230	190620230	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_022353.2	-1	validated	p.R93L	0.005	103	0%	146	40.4%	5	40%	benign(0.096)	tolerated(0.37)	neutral(0.026)	HMMPfam_Peptidase_M22,superfamily_Actin-like ATPase domain
INPP1	3628	genome.wustl.edu	37	2	191236072	191236072	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001128928.1	+1	reviewed	p.E382*	1.000	66	1.5%	87	21.8%	7	28.5%	-	-	-	superfamily_Carbohydrate phosphatase
NAB1	4664	genome.wustl.edu	37	2	191551947	191551947	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005966.3	+1	validated	p.R427*	1.000	111	0%	108	44.4%	23	21.7%	-	-	-	HMMPfam_Nab1
TMEFF2	23671	genome.wustl.edu	37	2	192922425	192922425	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016192.2	-1	provisional	p.D172	0.998	129	0%	167	52.7%	0	-	-	-	-	superfamily_Kazal-type serine protease inhibitors
DNAH7	56171	genome.wustl.edu	37	2	196636412	196636412	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018897.2	-1	validated	p.S3802L	0.998	299	0%	392	43.9%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Dynein_heavy
DNAH7	56171	genome.wustl.edu	37	2	196718094	196718094	+	Silent	SNP	G	G	A	rs147463217	by1000genomes	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018897.2	-1	validated	p.L2918	0.996	116	0%	155	20%	1	0%	-	-	-	NULL
DNAH7	56171	genome.wustl.edu	37	2	196865502	196865502	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018897.2	-1	validated	p.L427I	0.629	274	0%	276	35.1%	0	-	possibly_damaging(0.579)	tolerated(0.21)	neutral(0.243)	NULL
STK17B	9262	genome.wustl.edu	37	2	197002222	197002222	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004226.3	-1	validated	p.F356	0.991	249	0%	304	40.5%	2	0%	-	-	-	NULL
HECW2	57520	genome.wustl.edu	37	2	197184345	197184345	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020760.1	-1	provisional	p.I423	0.242	63	0%	90	47.8%	0	-	-	-	-	NULL
HECW2	57520	genome.wustl.edu	37	2	197184586	197184586	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020760.1	-1	provisional	p.S343Y	0.025	84	0%	110	46.4%	0	-	possibly_damaging(0.861)	deleterious(0)	deleterious(0.778)	NULL
CCDC150	284992	genome.wustl.edu	37	2	197594043	197594043	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001080539.1	+1	provisional	p.Q895K	0.955	165	0%	198	26.3%	0	-	possibly_damaging(0.891)	tolerated(0.3)	neutral(0.379)	NULL
PGAP1	80055	genome.wustl.edu	37	2	197767400	197767400	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024989.3	-1	validated	p.S239Y	1.000	252	0%	330	36.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PGAP1,superfamily_alpha/beta-Hydrolases
ANKRD44	91526	genome.wustl.edu	37	2	198011784	198011784	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_153697.1	-1	provisional	p.D28Y	1.000	237	0%	271	41.7%	1	100%	benign(0.029)	deleterious(0.03)	neutral(0.366)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
SF3B1	23451	genome.wustl.edu	37	2	198266828	198266828	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012433.2	-1	reviewed	p.R702W	1.000	81	0%	90	44.4%	193	41.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HEAT,superfamily_ARM repeat
PLCL1	5334	genome.wustl.edu	37	2	198948691	198948691	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006226.3	+1	validated	p.K52N	1.000	182	0%	178	41.6%	0	-	probably_damaging(0.999)	tolerated(0.23)	deleterious(0.532)	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
TYW5	129450	genome.wustl.edu	37	2	200801182	200801182	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001039693.2	-1	validated	p.K174Q	1.000	204	0%	266	44%	3	66.6%	benign(0.405)	tolerated(0.21)	neutral(0.174)	HMMSmart_SM00558,superfamily_Clavaminate synthase-like
SGOL2	151246	genome.wustl.edu	37	2	201436940	201436940	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152524.5	+1	validated	p.S624Y	0.787	17	0%	18	55.6%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
AOX1	316	genome.wustl.edu	37	2	201473767	201473767	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001159.3	+1	reviewed	p.V323A	0.021	115	0%	129	55.8%	0	-	benign(0.413)	deleterious(0.01)	deleterious(0.539)	HMMPfam_FAD_binding_5,superfamily_FAD-binding domain
AOX1	316	genome.wustl.edu	37	2	201485845	201485845	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001159.3	+1	reviewed	p.S626Y	0.858	175	0%	266	40.6%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Ald_Xan_dh_C,superfamily_CO dehydrogenase molybdoprotein N-domain-like
AOX1	316	genome.wustl.edu	37	2	201515909	201515909	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001159.3	+1	reviewed	p.S1020	0.000	123	0%	164	38.4%	0	-	-	-	-	HMMPfam_Ald_Xan_dh_C2,superfamily_Molybdenum cofactor-binding domain
CLK1	1195	genome.wustl.edu	37	2	201724413	201724413	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004071.3	-1	reviewed	p.D180N	1.000	212	0%	222	48.6%	42	30.9%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
PPIL3	53938	genome.wustl.edu	37	2	201741706	201741706	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032472.3	-1	reviewed	p.S103A	0.999	225	0%	282	40.1%	45	40%	probably_damaging(0.964)	deleterious(0.04)	deleterious(0.755)	HMMPfam_Pro_isomerase,superfamily_CSA_PPIase
FAM126B	285172	genome.wustl.edu	37	2	201857702	201857702	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_173822.3	-1	validated	p.R217	0.999	234	0%	280	41.8%	0	-	-	-	-	HMMPfam_Hyccin
CFLAR	8837	genome.wustl.edu	37	2	202000975	202000975	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000395148	+1	known	p.I193S	0.000	34	0%	39	43.6%	7	14.2%	benign(0.001)	tolerated(0.1)	neutral(0.286)	NULL
CFLAR	8837	genome.wustl.edu	37	2	202006136	202006136	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001127184.1	+1	validated	p.L216I	0.000	346	0%	442	15.6%	1	0%	benign(0.265)	deleterious(0)	deleterious(0.472)	NULL
CASP10	843	genome.wustl.edu	37	2	202050564	202050564	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032977.3	+1	reviewed	p.E22*	0.000	52	0%	90	31.1%	0	-	-	-	-	HMMPfam_DED,HMMSmart_DED,superfamily_DEATH_like
CASP8	841	genome.wustl.edu	37	2	202131364	202131364	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001080125.1	+1	reviewed	p.R111I	0.456	120	0%	172	43%	6	50%	possibly_damaging(0.832)	deleterious(0.02)	deleterious(0.700)	HMMPfam_DED,HMMSmart_SM00031,superfamily_DEATH domain
CASP8	841	genome.wustl.edu	37	2	202131412	202131412	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001080125.1	+1	reviewed	p.R127Q	0.037	127	0%	145	41.4%	10	20%	probably_damaging(0.994)	tolerated(0.33)	deleterious(0.476)	HMMPfam_DED,HMMSmart_SM00031,superfamily_DEATH domain
CASP8	841	genome.wustl.edu	37	2	202149963	202149963	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000444430	+1	known	p.C189R	0.912	66	0%	85	16.5%	36	27.7%	-	-	-	HMMPfam_Peptidase_C14,HMMSmart_SM00115,superfamily_Caspase-like
ALS2CR11	151254	genome.wustl.edu	37	2	202357246	202357246	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000439140	-1	known	p.S1273Y	0.008	99	0%	134	41.8%	0	-	probably_damaging(0.983)	-	-	NULL
MPP4	58538	genome.wustl.edu	37	2	202521071	202521071	+	Missense_Mutation	SNP	G	G	A	rs141592467	by1000genomes	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033066.2	-1	reviewed	p.R384C	1.000	14	0%	24	20.8%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
MPP4	58538	genome.wustl.edu	37	2	202547556	202547556	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033066.2	-1	reviewed	p.L220M	1.000	141	0%	194	36.1%	0	-	possibly_damaging(0.916)	tolerated(0.09)	deleterious(0.663)	superfamily_SH3-domain,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
FZD7	8324	genome.wustl.edu	37	2	202900492	202900492	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003507.1	+1	reviewed	p.I374	1.000	46	0%	53	49.1%	0	-	-	-	-	HMMPfam_Frizzled
BMPR2	659	genome.wustl.edu	37	2	203420177	203420177	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001204.6	+1	reviewed	p.R597*	1.000	176	0%	230	43.9%	25	24%	-	-	-	NULL
BMPR2	659	genome.wustl.edu	37	2	203420415	203420415	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001204.6	+1	reviewed	p.N676S	1.000	113	0%	107	37.4%	8	12.5%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
WDR12	55759	genome.wustl.edu	37	2	203762044	203762044	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018256.3	-1	reviewed	p.D145Y	1.000	291	0%	327	40.4%	23	34.7%	possibly_damaging(0.739)	tolerated(0.06)	deleterious(0.593)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
ALS2CR8	79800	genome.wustl.edu	37	2	203846925	203846925	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001104586.1	+1	validated	p.S607Y	1.000	151	0%	213	47.9%	0	-	possibly_damaging(0.906)	deleterious(0.01)	deleterious(0.765)	NULL
NBEAL1	65065	genome.wustl.edu	37	2	203995185	203995185	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001114132.1	+1	validated	p.E1155*	1.000	183	0%	265	46%	0	-	-	-	-	NULL
NBEAL1	65065	genome.wustl.edu	37	2	203996722	203996722	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001114132.1	+1	validated	p.T1168	0.722	172	0%	199	50.3%	1	100%	-	-	-	NULL
NBEAL1	65065	genome.wustl.edu	37	2	204001463	204001463	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001114132.1	+1	validated	p.E1482*	1.000	122	0%	210	44.8%	1	0%	-	-	-	NULL
CYP20A1	57404	genome.wustl.edu	37	2	204144807	204144807	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_177538.2	+1	reviewed	p.S274Y	1.000	340	0%	390	42.8%	3	33.3%	possibly_damaging(0.731)	tolerated(0.07)	deleterious(0.586)	superfamily_Cytochrome_P450
ABI2	10152	genome.wustl.edu	37	2	204231627	204231627	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005759.4	+1	validated	p.E49*	1.000	284	0%	286	46.9%	8	25%	-	-	-	NULL
EEF1B2	1933	genome.wustl.edu	37	2	207027283	207027283	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001037663.1	+1	reviewed	p.A156	0.981	197	0.5%	253	46.2%	609	41.2%	-	-	-	HMMPfam_EF1_GNE,superfamily_eEF-1beta-like
ZDBF2	57683	genome.wustl.edu	37	2	207170392	207170392	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020923.1	+1	validated	p.E380D	0.000	207	0%	285	43.9%	0	-	benign(0.008)	tolerated(0.48)	neutral(0.011)	NULL
ZDBF2	57683	genome.wustl.edu	37	2	207172910	207172910	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020923.1	+1	validated	p.E1220*	0.131	75	0%	103	49.5%	0	-	-	-	-	NULL
ZDBF2	57683	genome.wustl.edu	37	2	207174854	207174854	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020923.1	+1	validated	p.V1868F	0.000	192	0%	238	46.2%	0	-	possibly_damaging(0.824)	deleterious(0.03)	deleterious(0.676)	NULL
ZDBF2	57683	genome.wustl.edu	37	2	207175201	207175201	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020923.1	+1	validated	p.K1983N	0.050	114	0%	136	46.3%	0	-	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	NULL
ZDBF2	57683	genome.wustl.edu	37	2	207175936	207175936	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020923.1	+1	validated	p.S2228	0.152	69	0%	108	45.4%	0	-	-	-	-	NULL
ZDBF2	57683	genome.wustl.edu	37	2	207176043	207176043	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020923.1	+1	validated	p.R2264I	0.005	77	0%	115	34.8%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
LOC200726	200726	genome.wustl.edu	37	2	207509209	207509209	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001102659.1	+1	predicted	p.E83D	1.000	174	0%	240	43.3%	0	-	-	-	-	NULL
MDH1B	130752	genome.wustl.edu	37	2	207625718	207625718	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001039845.1	-1	validated	p.Y14	0.999	197	0%	254	47.2%	0	-	-	-	-	NULL
PIKFYVE	200576	genome.wustl.edu	37	2	209204755	209204755	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015040.3	+1	reviewed	p.L1611	1.000	223	0%	273	16.1%	6	0%	-	-	-	NULL
PIKFYVE	200576	genome.wustl.edu	37	2	209217386	209217386	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015040.3	+1	reviewed	p.T1908	0.775	142	0%	166	47.6%	1	100%	-	-	-	HMMPfam_PIP5K,HMMSmart_SM00330,superfamily_SAICAR synthase-like
UNC80	285175	genome.wustl.edu	37	2	210802262	210802262	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032504.1	+1	validated	p.R2059*	1.000	360	0.3%	461	12.4%	0	-	-	-	-	NULL
MYL1	4632	genome.wustl.edu	37	2	211163270	211163270	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_079420.2	-1	reviewed	p.L60I	1.000	148	0%	163	46.6%	0	-	benign(0.005)	tolerated(0.15)	neutral(0.241)	HMMSmart_SM00054,superfamily_EF-hand
CPS1	1373	genome.wustl.edu	37	2	211464185	211464185	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001122633.1	+1	reviewed	p.Y489*	1.000	155	0%	220	26.4%	0	-	-	-	-	HMMPfam_CPSase_L_chain,superfamily_PreATP-grasp domain
CPS1	1373	genome.wustl.edu	37	2	211503904	211503904	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001122633.1	+1	reviewed	p.V960L	0.996	182	0%	233	47.2%	1	0%	benign(0.009)	tolerated(0.75)	neutral(0.002)	HMMPfam_CPSase_L_D3,superfamily_Carbamoyl phosphate synthetase large subunit connection domain
CPS1	1373	genome.wustl.edu	37	2	211525259	211525259	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001122633.1	+1	reviewed	p.K1275N	1.000	390	0%	501	43.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Glutathione synthetase ATP-binding domain-like
CPS1	1373	genome.wustl.edu	37	2	211541813	211541813	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001122633.1	+1	reviewed	p.R1459W	1.000	294	0%	453	44.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MGS,superfamily_Methylglyoxal synthase-like
ERBB4	2066	genome.wustl.edu	37	2	212285327	212285327	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005235.2	-1	reviewed	p.R992C	1.000	173	0%	238	43.3%	1	100%	benign(0.156)	deleterious(0.01)	neutral(0.420)	superfamily_Protein kinase-like (PK-like)
SPAG16	79582	genome.wustl.edu	37	2	215013945	215013945	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024532.3	+1	validated	p.D559N	1.000	242	0%	317	40.4%	0	-	probably_damaging(0.988)	tolerated(0.24)	deleterious(0.475)	HMMSmart_SM00320,superfamily_WD40 repeat-like
ABCA12	26154	genome.wustl.edu	37	2	215807685	215807685	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_173076.2	-1	reviewed	p.F2467C	1.000	173	0%	285	41.1%	4	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCA12	26154	genome.wustl.edu	37	2	215846949	215846949	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_173076.2	-1	reviewed	p.R1514H	1.000	186	0%	298	19.8%	4	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
ATIC	471	genome.wustl.edu	37	2	216211586	216211586	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000426233	+1	known	p.D144N	0.323	213	0%	267	41.9%	147	41.4%	-	-	-	superfamily_AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC
FN1	2335	genome.wustl.edu	37	2	216236733	216236733	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_212482.1	-1	reviewed	p.E2205K	1.000	339	0%	431	38.7%	95	0%	benign(0.059)	tolerated(0.08)	neutral(0.304)	HMMSmart_SM00060
FN1	2335	genome.wustl.edu	37	2	216241231	216241231	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_212482.1	-1	reviewed	p.Y1959	0.999	124	0%	205	50.2%	193	0%	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
FN1	2335	genome.wustl.edu	37	2	216248174	216248174	+	Missense_Mutation	SNP	C	C	T	rs140153061	by1000genomes	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_212482.1	-1	reviewed	p.D1643N	0.998	216	0%	294	48%	67	2.9%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
FN1	2335	genome.wustl.edu	37	2	216259388	216259388	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_212482.1	-1	reviewed	p.S1220Y	0.571	220	0%	300	44%	26	0%	possibly_damaging(0.761)	deleterious(0.01)	deleterious(0.688)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
FN1	2335	genome.wustl.edu	37	2	216273042	216273042	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_212482.1	-1	reviewed	p.L803M	1.000	209	0%	245	40.8%	44	0%	probably_damaging(0.986)	deleterious(0.01)	deleterious(0.840)	superfamily_Fibronectin type III
FN1	2335	genome.wustl.edu	37	2	216296577	216296577	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_212482.1	-1	reviewed	p.E176*	1.000	222	0%	313	39.3%	37	0%	-	-	-	HMMPfam_fn1,HMMSmart_SM00058,PatternScan_FN1_1,superfamily_Fibronectin type I module
TMEM169	92691	genome.wustl.edu	37	2	216965056	216965056	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001142310.1	+1	validated	p.A229T	1.000	216	0%	245	49.8%	0	-	benign(0.009)	tolerated(0.16)	neutral(0.060)	NULL
TNS1	7145	genome.wustl.edu	37	2	218745638	218745638	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_022648.4	-1	reviewed	p.R346Q	0.192	93	0%	133	42.1%	10	30%	benign(0.137)	tolerated(0.28)	neutral(0.043)	NULL
RUFY4	285180	genome.wustl.edu	37	2	218954022	218954022	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_198483.3	+1	validated	p.A344D	0.908	134	0%	137	46.7%	0	-	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	HMMPfam_FYVE,superfamily_FYVE/PHD zinc finger
AAMP	14	genome.wustl.edu	37	2	219134243	219134243	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001087.3	-1	reviewed	p.E46K	1.000	87	0%	100	52%	102	45%	unknown(0)	tolerated(0.07)	-	superfamily_WD40_like
PNKD	25953	genome.wustl.edu	37	2	219136109	219136109	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015488.4	+1	reviewed	p.L25I	1.000	74	0%	78	44.9%	17	29.4%	possibly_damaging(0.942)	deleterious(0)	deleterious(0.832)	NULL
C2orf62	375307	genome.wustl.edu	37	2	219222760	219222760	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_198559.1	+1	predicted	p.G107D	0.972	75	0%	76	47.4%	1	0%	possibly_damaging(0.95)	deleterious(0.02)	deleterious(0.776)	NULL
USP37	57695	genome.wustl.edu	37	2	219362522	219362522	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020935.2	-1	validated	p.L406V	1.000	266	0%	355	45.9%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_UCH,superfamily_Cysteine proteinases
ZNF142	7701	genome.wustl.edu	37	2	219503373	219503373	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001105537.1	-1	validated	p.R1585C	1.000	48	0%	77	37.7%	126	38%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
TTLL4	9654	genome.wustl.edu	37	2	219603065	219603065	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014640.4	+1	validated	p.F222L	1.000	30	0%	43	44.2%	7	85.7%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
TTLL4	9654	genome.wustl.edu	37	2	219618318	219618318	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000417855	+1	known	p.R114Q	0.001	86	0%	168	44.6%	16	25%	-	-	-	NULL
CNPPD1	27013	genome.wustl.edu	37	2	220039646	220039646	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000451647	-1	known	p.L149F	0.000	133	0%	213	23.5%	0	-	unknown(0)	-	-	NULL
ANKZF1	55139	genome.wustl.edu	37	2	220096687	220096687	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000416565	+1	known	p.S44F	0.108	187	0%	258	40.3%	5	60%	unknown(0)	-	-	NULL
GLB1L	79411	genome.wustl.edu	37	2	220104727	220104727	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024506.3	-1	provisional	p.K212N	0.923	77	0%	117	38.5%	2	0%	benign(0)	tolerated(0.34)	neutral(0.023)	HMMPfam_Glyco_hydro_35,superfamily_(Trans)glycosidases
DNAJB2	3300	genome.wustl.edu	37	2	220147859	220147859	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006736.5	+1	validated	p.F150L	0.961	185	0%	238	42%	81	39.5%	benign(0.287)	tolerated(0.09)	neutral(0.385)	NULL
PTPRN	5798	genome.wustl.edu	37	2	220166420	220166420	+	Missense_Mutation	SNP	G	G	A	rs146577812	by1000genomes	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002846.2	-1	reviewed	p.A339V	0.990	20	0%	19	31.6%	0	-	benign(0.027)	tolerated(0.32)	neutral(0.026)	NULL
ASIC4	55515	genome.wustl.edu	37	2	220402427	220402427	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018674.4	+1	reviewed	p.S619Y	1.000	25	0%	39	61.5%	0	-	possibly_damaging(0.894)	deleterious(0.02)	deleterious(0.735)	NULL
STK11IP	114790	genome.wustl.edu	37	2	220470430	220470430	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000456909	+1	known	p.R240Q	1.000	140	0%	142	48.6%	4	50%	benign(0.319)	tolerated(0.08)	neutral(0.399)	superfamily_Outer arm dynein light chain 1
SLC4A3	6508	genome.wustl.edu	37	2	220501492	220501492	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_201574.2	+1	validated	p.E838K	1.000	251	0%	339	49.6%	15	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HCO3_cotransp
SLC4A3	6508	genome.wustl.edu	37	2	220502412	220502412	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_201574.2	+1	validated	p.G909D	0.018	47	0%	51	54.9%	10	30%	benign(0.055)	tolerated(0.33)	neutral(0.028)	HMMPfam_HCO3_cotransp
EPHA4	2043	genome.wustl.edu	37	2	222290781	222290781	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004438.3	-1	reviewed	p.M976I	1.000	242	0%	323	42.1%	2	100%	benign(0.002)	tolerated(0.21)	neutral(0.044)	superfamily_SAM_homology
EPHA4	2043	genome.wustl.edu	37	2	222291271	222291271	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004438.3	-1	reviewed	p.L920P	1.000	76	0%	97	46.4%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SAM,superfamily_SAM_homology,HMMPfam_SAM_2
EPHA4	2043	genome.wustl.edu	37	2	222347302	222347302	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004438.3	-1	reviewed	p.N363S	0.999	150	0%	198	42.4%	1	0%	benign(0.002)	tolerated(0.63)	neutral(0.004)	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
FARSB	10056	genome.wustl.edu	37	2	223494887	223494887	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005687.3	-1	reviewed	p.I265V	1.000	218	0%	242	38.8%	10	20%	benign(0)	tolerated(0.28)	neutral(0.032)	HMMPfam_B3_4,superfamily_B3/B4 domain of PheRS PheT
AP1S3	130340	genome.wustl.edu	37	2	224642539	224642539	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001039569.1	-1	validated	p.Q17H	1.000	131	0%	130	10%	6	0%	benign(0.347)	tolerated(0.12)	neutral(0.370)	HMMPfam_Clat_adaptor_s,superfamily_SNARE-like
MRPL44	65080	genome.wustl.edu	37	2	224824263	224824263	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_022915.3	+1	reviewed	p.P64	0.985	73	0%	121	20.7%	13	15.3%	-	-	-	superfamily_RNase_III
DOCK10	55619	genome.wustl.edu	37	2	225750387	225750387	+	Splice_Site	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014689.2	-1	validated	e7+1	1.000	258	0.4%	308	44.5%	0	-	-	-	-	-
RHBDD1	84236	genome.wustl.edu	37	2	227729609	227729609	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032276.3	+1	validated	p.R67H	1.000	190	0%	261	41.8%	4	25%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Rhomboid
COL4A3	1285	genome.wustl.edu	37	2	228104927	228104927	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000091.3	+1	reviewed	p.L71	0.107	91	0%	103	22.3%	0	-	-	-	-	HMMPfam_Collagen
WDR69	164781	genome.wustl.edu	37	2	228756017	228756017	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_178821.1	+1	provisional	p.K102T	1.000	402	0%	499	46.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
DNER	92737	genome.wustl.edu	37	2	230453132	230453132	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_139072.3	-1	validated	p.V220L	1.000	200	0.5%	272	38.6%	1	0%	probably_damaging(0.987)	tolerated(0.21)	deleterious(0.480)	NULL
TRIP12	9320	genome.wustl.edu	37	2	230723928	230723928	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004238.1	-1	provisional	p.S154N	0.996	159	0%	167	41.9%	9	44.4%	possibly_damaging(0.488)	deleterious(0)	deleterious(0.607)	NULL
SLC16A14	151473	genome.wustl.edu	37	2	230910392	230910392	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000457406	-1	known	p.D484Y	0.005	15	0%	23	47.8%	0	-	probably_damaging(0.988)	-	-	NULL
ITM2C	81618	genome.wustl.edu	37	2	231741620	231741620	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_030926.4	+1	validated	p.E167K	0.999	97	0%	137	43.1%	845	33.4%	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	HMMPfam_BRICHOS
ALPPL2	251	genome.wustl.edu	37	2	233274362	233274362	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_031313.2	+1	reviewed	p.A460V	1.000	19	0%	24	45.8%	45	57.7%	probably_damaging(0.971)	deleterious(0)	deleterious(0.857)	HMMPfam_Alk_phosphatase,HMMSmart_alkPPc,superfamily_Alkaline_phosphatase_core
GIGYF2	26058	genome.wustl.edu	37	2	233651868	233651868	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001103147.1	+1	reviewed	p.N203H	1.000	221	0%	280	40.7%	12	33.3%	probably_damaging(0.996)	tolerated(0.14)	deleterious(0.711)	NULL
NGEF	25791	genome.wustl.edu	37	2	233744230	233744230	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_019850.2	-1	validated	p.R701H	1.000	93	0%	112	50.9%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
INPP5D	3635	genome.wustl.edu	37	2	234098502	234098502	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000359570	+1	known	p.P789S	1.000	317	0%	449	45.4%	6	33.3%	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	NULL
ATG16L1	55054	genome.wustl.edu	37	2	234173758	234173758	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_030803.6	+1	validated	p.R204W	0.998	104	0%	96	39.6%	2	50%	benign(0.016)	deleterious(0.03)	neutral(0.365)	superfamily_WD40 repeat-like,HMMPfam_ATG16
ATG16L1	55054	genome.wustl.edu	37	2	234191391	234191391	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_030803.6	+1	validated	p.R399*	0.999	284	0%	374	42%	15	20%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
DGKD	8527	genome.wustl.edu	37	2	234296985	234296985	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152879.2	+1	reviewed	p.R80Q	1.000	113	0%	120	28.3%	4	25%	probably_damaging(0.998)	tolerated(0.45)	deleterious(0.486)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
DGKD	8527	genome.wustl.edu	37	2	234358766	234358766	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152879.2	+1	reviewed	p.S676N	1.000	27	0%	53	28.3%	3	33.3%	benign(0.132)	tolerated(0.21)	neutral(0.055)	NULL
UGT1A3	54659	genome.wustl.edu	37	2	234638459	234638459	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_019093.2	+1	reviewed	p.A229	0.000	448	0%	591	47.4%	0	-	-	-	-	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
HJURP	55355	genome.wustl.edu	37	2	234750256	234750256	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018410.3	-1	validated	p.F390	0.000	184	0%	222	15.3%	8	12.5%	-	-	-	NULL
TRPM8	79054	genome.wustl.edu	37	2	234851300	234851300	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024080.4	+1	validated	p.R203G	1.000	286	0%	319	44.8%	0	-	benign(0.001)	tolerated(0.38)	neutral(0.018)	NULL
SH3BP4	23677	genome.wustl.edu	37	2	235949672	235949672	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014521.2	+1	reviewed	p.T87A	0.971	138	0%	195	43.1%	112	45.5%	benign(0.159)	tolerated(0.17)	neutral(0.073)	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain
AGAP1	116987	genome.wustl.edu	37	2	236957747	236957747	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001037131.1	+1	validated	p.E646K	1.000	181	0%	257	42.4%	13	38.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ArfGap,HMMSmart_SM00105,superfamily_Pyk2-associated protein beta ARF-GAP domain
GBX2	2637	genome.wustl.edu	37	2	237074656	237074656	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001485.2	-1	validated	p.E316D	1.000	122	0%	160	41.9%	0	-	possibly_damaging(0.506)	tolerated(0.05)	deleterious(0.515)	NULL
COL6A3	1293	genome.wustl.edu	37	2	238296665	238296665	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004369.3	-1	reviewed	p.R291I	0.961	79	0%	116	50.9%	1	0%	unknown(0)	-	-	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
LRRFIP1	9208	genome.wustl.edu	37	2	238661956	238661956	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001137552.1	+1	validated	p.S163Y	1.000	77	0%	110	36.4%	30	60%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_DUF2051
RBM44	375316	genome.wustl.edu	37	2	238726400	238726400	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001080504.2	+1	validated	p.K281Q	0.000	84	0%	110	42.7%	0	-	benign(0.323)	tolerated(0.21)	neutral(0.145)	NULL
PASK	23178	genome.wustl.edu	37	2	242054766	242054766	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015148.2	-1	validated	p.K1045N	0.231	270	0%	325	44%	10	10%	benign(0.05)	deleterious(0.04)	neutral(0.352)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
ANO7	50636	genome.wustl.edu	37	2	242148759	242148759	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001001891.3	+1	validated	p.W433C	1.000	21	0%	24	41.7%	2	100%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
HDLBP	3069	genome.wustl.edu	37	2	242187665	242187665	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005336.3	-1	validated	p.F537L	0.999	252	0%	273	34.8%	312	41.3%	probably_damaging(0.995)	deleterious(0.03)	deleterious(0.822)	HMMSmart_KH,HMMPfam_KH_1,superfamily_SSF54791
CHL1	10752	genome.wustl.edu	37	3	396342	396342	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006614.2	+1	reviewed	p.K351N	1.000	114	0%	121	38.8%	0	-	possibly_damaging(0.869)	tolerated(0.48)	neutral(0.348)	superfamily_Immunoglobulin
CHL1	10752	genome.wustl.edu	37	3	403464	403464	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006614.2	+1	reviewed	p.F463L	0.975	305	0%	426	43.2%	0	-	benign(0.004)	tolerated(0.09)	neutral(0.296)	HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Immunoglobulin
CNTN6	27255	genome.wustl.edu	37	3	1394015	1394015	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014461.2	+1	reviewed	p.L458I	0.001	125	0%	155	32.3%	0	-	benign(0.002)	tolerated(1)	-	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726
CNTN6	27255	genome.wustl.edu	37	3	1424809	1424809	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014461.2	+1	reviewed	p.E784*	0.636	176	0%	270	43.3%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
CNTN6	27255	genome.wustl.edu	37	3	1427322	1427322	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014461.2	+1	reviewed	p.E849*	0.909	232	0%	292	46.2%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
CNTN4	152330	genome.wustl.edu	37	3	3097837	3097837	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_175607.1	+1	reviewed	p.S1005L	0.990	217	0%	343	47.8%	1	0%	benign(0)	tolerated(0.24)	neutral(0.037)	NULL
IL5RA	3568	genome.wustl.edu	37	3	3139688	3139688	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000564.3	-1	reviewed	p.R192I	0.782	256	0%	300	51%	0	-	possibly_damaging(0.64)	deleterious(0.02)	deleterious(0.607)	superfamily_Fibronectin type III
IL5RA	3568	genome.wustl.edu	37	3	3146654	3146654	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000564.3	-1	reviewed	p.A5	0.000	273	0.4%	290	45.2%	2	0%	-	-	-	NULL
TRNT1	51095	genome.wustl.edu	37	3	3188271	3188271	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_182916.2	+1	validated	p.H256N	1.000	351	0%	405	44.2%	2	0%	benign(0.247)	tolerated(0.5)	neutral(0.035)	superfamily_Poly A polymerase C-terminal region-like
LRRN1	57633	genome.wustl.edu	37	3	3887578	3887578	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020873.5	+1	validated	p.S418L	0.224	122	0.8%	146	47.3%	5	0%	benign(0)	tolerated(0.73)	neutral(0.002)	HMMPfam_LRRCT,HMMSmart_LRRCT
ITPR1	3708	genome.wustl.edu	37	3	4687105	4687105	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001099952.2	+1	reviewed	p.I220R	0.997	217	0%	279	45.2%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ins145_P3_rec,HMMSmart_SM00472
ITPR1	3708	genome.wustl.edu	37	3	4735356	4735356	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001099952.2	+1	reviewed	p.I1395	1.000	50	0%	85	37.6%	5	40%	-	-	-	NULL
BHLHE40	8553	genome.wustl.edu	37	3	5024644	5024644	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003670.2	+1	reviewed	p.S169L	0.929	45	0%	50	40%	100	49%	benign(0.268)	tolerated(0.09)	neutral(0.325)	HMMPfam_Hairy_orange,HMMSmart_SM00511
BHLHE40	8553	genome.wustl.edu	37	3	5025196	5025197	+	Frame_Shift_Ins	INS	-	-	AA	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003670.2	+1	reviewed	p.G354fs	0.989:0.000	-	-	-	-	-	-	-	-	-	NULL
GRM7	2917	genome.wustl.edu	37	3	7188172	7188172	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_181874.2	+1	reviewed	p.E185K	1.000	116	0%	151	45.7%	0	-	probably_damaging(0.999)	tolerated(0.43)	deleterious(0.504)	HMMPfam_ANF_receptor,superfamily_SSF53822
SRGAP3	9901	genome.wustl.edu	37	3	9101943	9101943	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014850.2	-1	validated	p.Y258C	1.000	324	0.3%	417	43.6%	24	45.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SETD5	55209	genome.wustl.edu	37	3	9506277	9506277	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001080517.1	+1	provisional	p.R882Q	1.000	158	0%	208	41.3%	57	31.5%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
BRPF1	7862	genome.wustl.edu	37	3	9783109	9783109	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001003694.1	+1	reviewed	p.L614F	1.000	76	0%	83	48.2%	8	12.5%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
FANCD2	2177	genome.wustl.edu	37	3	10081522	10081522	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033084.3	+1	reviewed	p.E230*	1.000	77	0%	109	34.9%	3	0%	-	-	-	NULL
VHL	7428	genome.wustl.edu	37	3	10191620	10191620	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000551.2	+1	reviewed	p.R205C	0.951	70	1.4%	95	10.5%	51	9.8%	probably_damaging(0.989)	deleterious(0.01)	deleterious(0.845)	HMMPfam_VHL,superfamily_VHL
IRAK2	3656	genome.wustl.edu	37	3	10242114	10242114	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001570.3	+1	reviewed	p.E113D	0.009	79	0%	98	28.6%	0	-	benign(0.011)	tolerated(0.44)	neutral(0.013)	NULL
TATDN2	9797	genome.wustl.edu	37	3	10320103	10320103	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014760.3	+1	validated	p.R701I	1.000	46	0%	88	56.8%	47	57.4%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_TatD_DNase,PatternScan_TATD_3,superfamily_SSF51556
SLC6A1	6529	genome.wustl.edu	37	3	11060307	11060307	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003042.3	+1	validated	p.L132	0.995	199	0%	231	43.7%	0	-	-	-	-	HMMPfam_SNF
SYN2	6854	genome.wustl.edu	37	3	12182196	12182196	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000426379	+1	known	p.S150*	1.000	327	0%	348	42.8%	0	-	-	-	-	NULL
SYN2	6854	genome.wustl.edu	37	3	12211393	12211393	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000341648	+1	known	p.T363I	1.000	34	0%	56	51.8%	0	-	probably_damaging(0.98)	tolerated(0.16)	deleterious(0.483)	NULL
NUP210	23225	genome.wustl.edu	37	3	13417924	13417924	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024923.2	-1	reviewed	p.R387Q	0.999	80	0%	102	43.1%	54	35.1%	probably_damaging(1)	tolerated(0.43)	deleterious(0.513)	NULL
FBLN2	2199	genome.wustl.edu	37	3	13612435	13612435	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001004019.1	+1	reviewed	p.E194K	0.998	25	0%	38	44.7%	8	25%	probably_damaging(0.955)	deleterious(0)	deleterious(0.843)	NULL
FBLN2	2199	genome.wustl.edu	37	3	13655632	13655632	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001004019.1	+1	reviewed	p.R566Q	0.950	24	0%	31	45.2%	13	23%	possibly_damaging(0.853)	deleterious(0.01)	deleterious(0.734)	NULL
WNT7A	7476	genome.wustl.edu	37	3	13896136	13896136	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004625.3	-1	reviewed	p.D155N	1.000	48	0%	49	46.9%	108	45.3%	possibly_damaging(0.514)	tolerated(0.98)	neutral(0.173)	HMMPfam_wnt,HMMSmart_SM00097
LSM3	27258	genome.wustl.edu	37	3	14223156	14223156	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000306024	+1	known	p.R40*	0.997	93	0%	159	42.8%	49	32.6%	-	-	-	HMMPfam_LSM,HMMSmart_SM00651,superfamily_Sm-like ribonucleoproteins
FGD5	152273	genome.wustl.edu	37	3	14860648	14860648	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152536.3	+1	validated	p.S24G	0.093	55	0%	89	11.2%	4	0%	possibly_damaging(0.458)	deleterious(0)	deleterious(0.595)	NULL
FGD5	152273	genome.wustl.edu	37	3	14861952	14861952	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152536.3	+1	validated	p.S458	0.000	25	0%	38	50%	1	0%	-	-	-	NULL
FGD5	152273	genome.wustl.edu	37	3	14940274	14940274	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152536.3	+1	validated	p.A1032V	0.635	55	0%	76	39.5%	5	0%	benign(0)	tolerated(0.36)	neutral(0.020)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
NR2C2	7182	genome.wustl.edu	37	3	15064783	15064783	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003298.3	+1	validated	p.I230	1.000	136	0%	137	41.6%	2	50%	-	-	-	superfamily_Nuclear receptor ligand-binding domain,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
MRPS25	64432	genome.wustl.edu	37	3	15094075	15094075	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_022497.3	-1	reviewed	p.R132Q	0.728	100	0%	121	40.5%	54	38.8%	unknown(0)	-	-	NULL
MIR563	693148	genome.wustl.edu	37	3	15915284	15915284	+	RNA	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000385080	+1	known	NULL	0.320	293	0%	424	44.3%	1	100%	-	-	-	-
RFTN1	23180	genome.wustl.edu	37	3	16399520	16399520	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015150.1	-1	validated	p.I355	1.000	177	0%	223	23.3%	12	0%	-	-	-	NULL
PLCL2	23228	genome.wustl.edu	37	3	17052909	17052909	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015184.5	+1	validated	p.D565Y	1.000	85	0%	111	45.9%	3	66.6%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_PI-PLC-Y,HMMSmart_PLCYc,superfamily_PLC-like_Pdiesterase_TIM-brl
SATB1	6304	genome.wustl.edu	37	3	18438719	18438719	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001131010.1	-1	validated	p.E235*	1.000	502	0%	682	43.3%	11	63.6%	-	-	-	NULL
KCNH8	131096	genome.wustl.edu	37	3	19492756	19492756	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_144633.2	+1	reviewed	p.S562Y	1.000	159	0%	233	45.1%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_cNMP,superfamily_cNMP_binding
KCNH8	131096	genome.wustl.edu	37	3	19556906	19556906	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_144633.2	+1	reviewed	p.S843Y	1.000	163	0%	185	43.2%	0	-	possibly_damaging(0.455)	tolerated(0.2)	neutral(0.198)	NULL
KCNH8	131096	genome.wustl.edu	37	3	19575403	19575403	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_144633.2	+1	reviewed	p.L1046I	1.000	147	0%	231	44.6%	0	-	probably_damaging(0.995)	tolerated(0.32)	deleterious(0.482)	NULL
KAT2B	8850	genome.wustl.edu	37	3	20187830	20187830	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003884.4	+1	reviewed	p.R676I	1.000	261	0%	350	41.7%	0	-	probably_damaging(0.956)	deleterious(0.01)	deleterious(0.805)	NULL
SGOL1	151648	genome.wustl.edu	37	3	20219761	20219761	+	Splice_Site	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001012410.2	-1	provisional	e3+2	1.000	153	0%	211	44.5%	0	-	-	-	-	-
UBE2E2	7325	genome.wustl.edu	37	3	23250267	23250267	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152653.3	+1	validated	p.S26I	0.999	174	0%	253	40.3%	8	12.5%	unknown(0)	deleterious(0.02)	-	NULL
NKIRAS1	28512	genome.wustl.edu	37	3	23934704	23934704	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020345.3	-1	validated	p.R154Q	0.984	369	0%	432	39.8%	5	40%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	superfamily_SSF52540
RARB	5915	genome.wustl.edu	37	3	25637918	25637918	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000965.3	+1	reviewed	p.E386	1.000	95	0%	127	47.2%	3	0%	-	-	-	HMMPfam_Hormone_recep,superfamily_Str_ncl_receptor
TOP2B	7155	genome.wustl.edu	37	3	25639801	25639801	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001068.2	-1	reviewed	p.N1621K	1.000	352	0%	443	40.2%	51	47%	possibly_damaging(0.911)	deleterious(0)	deleterious(0.807)	NULL
TOP2B	7155	genome.wustl.edu	37	3	25648860	25648860	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001068.2	-1	reviewed	p.R1362I	1.000	194	0%	227	45.8%	69	46.3%	possibly_damaging(0.942)	tolerated(0.05)	deleterious(0.732)	NULL
NGLY1	55768	genome.wustl.edu	37	3	25781078	25781078	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018297.3	-1	reviewed	p.R291*	1.000	73	0%	85	32.9%	22	4.5%	-	-	-	HMMPfam_Transglut_core,superfamily_Cysteine proteinases
OXSM	54995	genome.wustl.edu	37	3	25832608	25832608	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017897.2	+1	reviewed	p.G33R	0.186	140	0%	171	43.3%	6	50%	benign(0.002)	tolerated(0.1)	neutral(0.286)	NULL
TGFBR2	7048	genome.wustl.edu	37	3	30715678	30715678	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001024847.2	+1	reviewed	p.D471N	1.000	176	0%	238	42.4%	47	31.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
OSBPL10	114884	genome.wustl.edu	37	3	31871543	31871543	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017784.4	-1	reviewed	p.E240K	1.000	74	0%	86	38.4%	6	83.3%	possibly_damaging(0.692)	deleterious(0.01)	deleterious(0.653)	NULL
ZNF860	344787	genome.wustl.edu	37	3	32031883	32031883	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001137674.1	+1	provisional	p.R438C	0.000	267	0%	325	44%	0	-	possibly_damaging(0.925)	tolerated(0.23)	neutral(0.415)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
CMTM6	54918	genome.wustl.edu	37	3	32533224	32533224	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017801.2	-1	reviewed	p.D98G	0.205	193	0%	240	35.8%	12	50%	probably_damaging(0.998)	tolerated(0.66)	deleterious(0.477)	HMMPfam_MARVEL
CCR4	1233	genome.wustl.edu	37	3	32995122	32995122	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005508.4	+1	reviewed	p.L70F	1.000	522	0%	582	44.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
FBXL2	25827	genome.wustl.edu	37	3	33425651	33425651	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012157.3	+1	reviewed	p.Y374	0.923	47	0%	57	42.1%	12	25%	-	-	-	superfamily_SSF52047
TRANK1	9881	genome.wustl.edu	37	3	36893783	36893783	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014831.2	-1	provisional	p.E941*	1.000	165	0%	209	16.3%	1	0%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
TRANK1	9881	genome.wustl.edu	37	3	36897296	36897296	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014831.2	-1	provisional	p.K712T	0.000	245	0%	311	18%	5	20%	benign(0.001)	tolerated(0.24)	neutral(0.037)	superfamily_P-loop containing nucleoside triphosphate hydrolases
EPM2AIP1	9852	genome.wustl.edu	37	3	37033014	37033014	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014805.3	-1	reviewed	p.E519*	0.995	167	0%	185	49.7%	1	0%	-	-	-	NULL
MLH1	4292	genome.wustl.edu	37	3	37035138	37035138	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000249.3	+1	reviewed	p.E34*	1.000	81	0%	87	47.1%	2	0%	-	-	-	HMMPfam_HATPase_c,HMMSmart_HATPase_c,superfamily_ATP_bd_ATPase
LRRFIP2	9209	genome.wustl.edu	37	3	37095384	37095384	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006309.2	-1	validated	p.E708D	1.000	138	0%	204	45.6%	90	47.7%	probably_damaging(0.957)	tolerated(0.26)	neutral(0.434)	NULL
GOLGA4	2803	genome.wustl.edu	37	3	37367718	37367718	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002078.4	+1	reviewed	p.K1447N	0.903	84	0%	80	43.8%	6	50%	possibly_damaging(0.905)	deleterious(0.02)	deleterious(0.742)	NULL
ITGA9	3680	genome.wustl.edu	37	3	37565011	37565011	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002207.2	+1	reviewed	e12-1	1.000	223	0%	280	43.2%	0	-	-	-	-	-
ITGA9	3680	genome.wustl.edu	37	3	37818894	37818894	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002207.2	+1	reviewed	p.E851D	1.000	306	0%	347	46.1%	4	0%	benign(0)	tolerated(0.74)	neutral(0.002)	HMMPfam_Integrin_alpha2,superfamily_SSF69179
VILL	50853	genome.wustl.edu	37	3	38045822	38045822	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015873.3	+1	reviewed	p.E628K	1.000	57	0%	67	44.8%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00262,HMMPfam_Gelsolin,superfamily_Actin depolymerizing proteins
PLCD1	5333	genome.wustl.edu	37	3	38052853	38052853	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001130964.1	-1	validated	p.I235	0.996	37	0%	38	47.4%	26	42.3%	-	-	-	HMMPfam_efhand_like,superfamily_SSF47473
DLEC1	9940	genome.wustl.edu	37	3	38139080	38139080	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007337.2	+1	reviewed	p.I839	0.395	73	0%	122	50%	2	100%	-	-	-	NULL
OXSR1	9943	genome.wustl.edu	37	3	38263123	38263123	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005109.2	+1	reviewed	p.V182A	1.000	448	0%	591	40.3%	1	0%	probably_damaging(0.999)	tolerated(0.37)	deleterious(0.509)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
OXSR1	9943	genome.wustl.edu	37	3	38284249	38284249	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005109.2	+1	reviewed	p.E364*	1.000	408	0%	530	46%	4	25%	-	-	-	NULL
XYLB	9942	genome.wustl.edu	37	3	38442384	38442384	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005108.3	+1	reviewed	p.L481I	1.000	192	0%	282	42.2%	0	-	benign(0.02)	tolerated(0.29)	neutral(0.030)	HMMPfam_FGGY_C,superfamily_SSF53067
SCN10A	6336	genome.wustl.edu	37	3	38739416	38739416	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006514.2	-1	validated	p.S1765	0.005	144	0%	140	45.7%	0	-	-	-	-	NULL
SCN10A	6336	genome.wustl.edu	37	3	38755465	38755465	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006514.2	-1	validated	p.R1263Q	1.000	84	0%	124	44.4%	0	-	probably_damaging(0.959)	tolerated(0.15)	deleterious(0.643)	HMMPfam_Ion_trans,superfamily_SSF81324
SCN10A	6336	genome.wustl.edu	37	3	38793901	38793901	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006514.2	-1	validated	p.D522Y	0.988	97	0%	136	54.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CSRNP1	64651	genome.wustl.edu	37	3	39185085	39185085	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033027.3	-1	reviewed	p.E411K	0.991	55	0%	75	42.7%	92	35.8%	benign(0.042)	tolerated(0.06)	neutral(0.325)	NULL
XIRP1	165904	genome.wustl.edu	37	3	39226414	39226414	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_194293.2	-1	provisional	p.A1508V	0.000	19	0%	12	58.3%	0	-	possibly_damaging(0.942)	tolerated(0.9)	neutral(0.387)	NULL
ENTPD3	956	genome.wustl.edu	37	3	40456208	40456208	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001248.2	+1	validated	p.E158	0.023	349	0%	384	50.3%	10	60%	-	-	-	HMMPfam_GDA1_CD39
ZNF619	285267	genome.wustl.edu	37	3	40529118	40529118	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001145082.2	+1	validated	p.E413*	0.000	136	0%	123	39.8%	6	50%	-	-	-	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF620	253639	genome.wustl.edu	37	3	40558019	40558019	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_175888.2	+1	validated	p.E312K	0.001	120	0%	131	41.2%	4	50%	probably_damaging(0.984)	deleterious(0.02)	deleterious(0.814)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ULK4	54986	genome.wustl.edu	37	3	41746752	41746752	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017886.2	-1	validated	p.A894T	1.000	185	0%	205	39.5%	3	33.3%	probably_damaging(0.996)	tolerated(0.54)	deleterious(0.469)	NULL
LYZL4	131375	genome.wustl.edu	37	3	42445554	42445554	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_144634.2	-1	provisional	p.E119*	0.052	396	0.3%	457	45.7%	0	-	-	-	-	HMMPfam_Lys,HMMSmart_LYZ1,superfamily_SSF53955
SEC22C	9117	genome.wustl.edu	37	3	42597456	42597456	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032970.2	-1	reviewed	p.A226V	1.000	257	0%	272	16.5%	16	6.2%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
NKTR	4820	genome.wustl.edu	37	3	42661177	42661177	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005385.3	+1	reviewed	p.S88L	1.000	489	0.8%	532	44.5%	1	100%	possibly_damaging(0.825)	deleterious(0)	deleterious(0.757)	HMMPfam_Pro_isomerase,superfamily_CSA_PPIase
NKTR	4820	genome.wustl.edu	37	3	42679402	42679402	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005385.3	+1	reviewed	p.S736A	0.995	125	0%	170	35.3%	25	48%	unknown(0)	deleterious(0.01)	-	NULL
NKTR	4820	genome.wustl.edu	37	3	42679487	42679487	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005385.3	+1	reviewed	p.K764T	0.001	117	0%	146	48.6%	10	40%	unknown(0)	deleterious(0)	-	NULL
ZNF662	389114	genome.wustl.edu	37	3	42956284	42956284	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001134656.1	+1	validated	p.R266I	0.904	164	0%	217	39.2%	0	-	probably_damaging(0.973)	tolerated(0.05)	deleterious(0.760)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
C3orf77	375337	genome.wustl.edu	37	3	44284627	44284627	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001145030.1	+1	validated	p.S210Y	1.000	33	0%	28	39.3%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
C3orf77	375337	genome.wustl.edu	37	3	44285704	44285704	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001145030.1	+1	validated	p.S569Y	0.000	88	0%	100	43%	0	-	possibly_damaging(0.563)	tolerated(0.08)	deleterious(0.492)	NULL
C3orf77	375337	genome.wustl.edu	37	3	44285720	44285720	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001145030.1	+1	validated	p.S574	0.417	95	0%	99	40.4%	0	-	-	-	-	NULL
C3orf77	375337	genome.wustl.edu	37	3	44332375	44332375	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001145030.1	+1	validated	p.S1265L	1.000	130	0%	151	43%	0	-	possibly_damaging(0.806)	tolerated(0.06)	deleterious(0.626)	NULL
ZNF852	285346	genome.wustl.edu	37	3	44541145	44541145	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000436261	-1	known	p.R375Q	0.997	81	0%	77	46.8%	1	100%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF167	55888	genome.wustl.edu	37	3	44612305	44612305	+	Missense_Mutation	SNP	G	G	A	rs147008651	by1000genomes	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018651.2	+1	validated	p.R568Q	0.004	109	0%	167	42.5%	1	100%	benign(0.006)	tolerated(0.94)	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF660	285349	genome.wustl.edu	37	3	44635894	44635894	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_173658.1	+1	provisional	p.R70Q	1.000	108	0%	178	50%	0	-	probably_damaging(0.993)	deleterious(0.01)	deleterious(0.856)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF197	10168	genome.wustl.edu	37	3	44672649	44672649	+	Silent	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006991.3	+1	reviewed	p.A162	0.011	101	0%	159	50.3%	21	19%	-	-	-	NULL
ZNF197	10168	genome.wustl.edu	37	3	44685650	44685650	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006991.3	+1	reviewed	p.I1010fs	0.000	-	-	-	-	-	-	-	-	-	NULL
ZNF502	91392	genome.wustl.edu	37	3	44762917	44762917	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001134440.1	+1	validated	p.R203I	0.028	96	1%	130	44.6%	0	-	possibly_damaging(0.561)	deleterious(0.03)	deleterious(0.556)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
CXCR6	10663	genome.wustl.edu	37	3	45988384	45988384	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006564.1	+1	validated	p.A137	0.994	143	0%	151	55%	4	25%	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
CCR1	1230	genome.wustl.edu	37	3	46245228	46245228	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001295.2	-1	reviewed	p.R193*	0.000	107	0%	139	51.8%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
CCR2	729230	genome.wustl.edu	37	3	46399167	46399167	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001123041.2	+1	validated	p.S50L	0.998	298	0%	371	42.3%	1	0%	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	superfamily_Family A G protein-coupled receptor-like
LTF	4057	genome.wustl.edu	37	3	46491357	46491357	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002343.2	-1	reviewed	p.Q348	0.005	109	0%	120	20%	0	-	-	-	-	HMMPfam_Transferrin,HMMSmart_TR_FER,superfamily_SSF53850
TMIE	259236	genome.wustl.edu	37	3	46750671	46750671	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_147196.2	+1	reviewed	p.I89	0.149	74	0%	104	42.3%	0	-	-	-	-	NULL
SETD2	29072	genome.wustl.edu	37	3	47162718	47162718	+	Silent	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000445387	-1	known	p.N770H	0.145	277	0%	305	43%	2	0%	-	-	-	NULL
SETD2	29072	genome.wustl.edu	37	3	47164211	47164211	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014159.6	-1	reviewed	p.E639K	1.000	117	0%	143	44.8%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
KIF9	64147	genome.wustl.edu	37	3	47307353	47307353	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001134878.1	-1	validated	p.V261	0.997	150	0%	222	38.3%	0	-	-	-	-	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
PTPN23	25930	genome.wustl.edu	37	3	47450514	47450514	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015466.2	+1	validated	p.R527C	1.000	28	0%	44	34.1%	114	43.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PTPN23	25930	genome.wustl.edu	37	3	47452102	47452102	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015466.2	+1	validated	p.F938L	0.000	24	0%	29	41.4%	17	47%	benign(0.278)	tolerated(1)	neutral(0.030)	NULL
PTPN23	25930	genome.wustl.edu	37	3	47452140	47452140	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015466.2	+1	validated	p.I951N	0.000	17	0%	18	38.9%	12	41.6%	possibly_damaging(0.727)	tolerated(0.14)	deleterious(0.514)	NULL
DHX30	22907	genome.wustl.edu	37	3	47890983	47890983	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_138615.2	+1	reviewed	p.N1044D	1.000	47	0%	66	36.4%	396	39.1%	benign(0.137)	tolerated(0.65)	neutral(0.014)	HMMPfam_DUF1605
MAP4	4134	genome.wustl.edu	37	3	47951832	47951832	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000426837	-1	known	p.S1377I	0.651	19	0%	24	62.5%	3	100%	benign(0.25)	deleterious(0)	deleterious(0.470)	NULL
MAP4	4134	genome.wustl.edu	37	3	47957500	47957500	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002375.4	-1	reviewed	p.H606R	0.934	239	0%	288	48.6%	41	56%	unknown(0)	tolerated(0.15)	-	NULL
MAP4	4134	genome.wustl.edu	37	3	47958045	47958045	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002375.4	-1	reviewed	p.I424	0.000	147	0%	216	45.8%	90	52.2%	-	-	-	NULL
CDC25A	993	genome.wustl.edu	37	3	48228208	48228208	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001789.2	-1	reviewed	p.E78K	0.993	177	0%	220	46.4%	3	33.3%	probably_damaging(0.996)	deleterious(0.04)	deleterious(0.810)	NULL
ZNF589	51385	genome.wustl.edu	37	3	48310236	48310236	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000296437	+1	known	e4+2	0.995	47	0%	77	50.6%	17	35.2%	-	-	-	-
FBXW12	285231	genome.wustl.edu	37	3	48419843	48419843	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_207102.2	+1	validated	p.H148Y	0.000	152	0%	168	44%	0	-	benign(0)	tolerated(1)	-	superfamily_WD40_like
ATRIP	84126	genome.wustl.edu	37	3	48493159	48493159	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_130384.1	+1	reviewed	p.L136I	1.000	117	0%	152	38.8%	2	0%	probably_damaging(0.996)	deleterious(0.05)	deleterious(0.807)	NULL
COL7A1	1294	genome.wustl.edu	37	3	48630663	48630663	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000094.3	-1	reviewed	p.R185Q	0.041	89	0%	101	44.6%	15	0%	unknown(0)	deleterious(0.02)	-	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
QARS	5859	genome.wustl.edu	37	3	49137237	49137237	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005051.1	-1	reviewed	p.E449K	1.000	250	0%	425	42.8%	721	43.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_tRNA-synt_1c,superfamily_SSF52374
USP19	10869	genome.wustl.edu	37	3	49146509	49146509	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006677.1	-1	provisional	p.G1280D	0.974	26	0%	34	29.4%	8	12.5%	benign(0.406)	tolerated(0.07)	neutral(0.450)	NULL
LAMB2	3913	genome.wustl.edu	37	3	49159123	49159123	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002292.3	-1	reviewed	p.A1698	1.000	83	0%	97	49.5%	325	37.5%	-	-	-	NULL
CCDC71	64925	genome.wustl.edu	37	3	49200413	49200413	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_022903.3	-1	validated	p.R410Q	0.000	200	0%	219	38.8%	44	50%	benign(0.253)	tolerated(0.13)	neutral(0.279)	NULL
CCDC36	339834	genome.wustl.edu	37	3	49294343	49294343	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001135197.1	+1	validated	p.F471L	0.000	134	0%	159	30.2%	0	-	benign(0)	deleterious(0)	neutral(0.445)	NULL
BSN	8927	genome.wustl.edu	37	3	49693791	49693791	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003458.3	+1	reviewed	p.P2268S	1.000	30	0%	41	39%	0	-	probably_damaging(0.994)	-	-	NULL
BSN	8927	genome.wustl.edu	37	3	49702255	49702255	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003458.3	+1	reviewed	p.F3922L	1.000	215	0%	260	43.1%	0	-	possibly_damaging(0.444)	-	-	NULL
FAM212A	389119	genome.wustl.edu	37	3	49841704	49841704	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_203370.1	+1	validated	p.L50F	0.759	89	0%	109	43.1%	2	0%	benign(0)	tolerated(0.71)	neutral(0.002)	NULL
TRAIP	10293	genome.wustl.edu	37	3	49866927	49866927	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005879.2	-1	reviewed	p.F417	0.800	108	0%	122	43.4%	25	28%	-	-	-	NULL
TRAIP	10293	genome.wustl.edu	37	3	49869357	49869357	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005879.2	-1	reviewed	p.E343D	0.142	164	0%	248	40.7%	1	0%	benign(0.209)	tolerated(0.29)	neutral(0.050)	NULL
TRAIP	10293	genome.wustl.edu	37	3	49878496	49878496	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005879.2	-1	reviewed	p.E209D	1.000	155	0%	186	33.9%	4	50%	probably_damaging(0.996)	tolerated(0.34)	deleterious(0.485)	superfamily_Prefoldin
TRAIP	10293	genome.wustl.edu	37	3	49881330	49881330	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005879.2	-1	reviewed	p.I104	0.203	185	0.5%	266	46.6%	13	53.8%	-	-	-	NULL
GNAI2	2771	genome.wustl.edu	37	3	50289947	50289947	+	Missense_Mutation	SNP	G	G	A	rs183955200	by1000genomes	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002070.2	+1	reviewed	p.D94N	1.000	45	0%	65	46.2%	1265	37.6%	benign(0)	tolerated(0.22)	neutral(0.042)	HMMPfam_G-alpha,superfamily_Transducin (alpha subunit) insertion domain,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases
C3orf18	51161	genome.wustl.edu	37	3	50602995	50602995	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016210.3	-1	validated	p.D46Y	0.990	97	0%	148	42.6%	0	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
RAD54L2	23132	genome.wustl.edu	37	3	51624446	51624446	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015106.2	+1	validated	p.E4K	1.000	253	0%	335	47.2%	4	50%	unknown(0)	deleterious(0)	-	NULL
RAD54L2	23132	genome.wustl.edu	37	3	51679609	51679609	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015106.2	+1	validated	p.R887W	1.000	187	0%	244	43.4%	8	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DUSP7	1849	genome.wustl.edu	37	3	52084904	52084904	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001947.3	-1	validated	p.S345L	1.000	121	0.8%	178	43.8%	36	36.1%	benign(0.08)	tolerated(0.06)	neutral(0.328)	NULL
POC1A	25886	genome.wustl.edu	37	3	52109939	52109939	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015426.4	-1	validated	p.E396D	1.000	110	0%	139	38.1%	24	37.5%	benign(0)	tolerated(0.5)	neutral(0.010)	NULL
ALAS1	211	genome.wustl.edu	37	3	52233360	52233360	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000688.4	+1	validated	p.K35E	0.997	57	0%	83	44.6%	30	53.3%	probably_damaging(0.98)	tolerated(0.14)	deleterious(0.673)	NULL
TWF2	11344	genome.wustl.edu	37	3	52263130	52263130	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007284.3	-1	reviewed	p.A324T	1.000	42	0%	53	22.6%	97	17.5%	possibly_damaging(0.791)	deleterious(0.01)	deleterious(0.702)	superfamily_SSF55753
DNAH1	25981	genome.wustl.edu	37	3	52383412	52383412	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015512.4	+1	validated	p.K834N	1.000	33	0%	38	50%	5	40%	benign(0.124)	tolerated(0.17)	neutral(0.069)	NULL
DNAH1	25981	genome.wustl.edu	37	3	52428568	52428568	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015512.4	+1	validated	p.R3572*	0.985	128	0%	179	42.5%	5	0%	-	-	-	HMMPfam_Dynein_heavy
STAB1	23166	genome.wustl.edu	37	3	52550557	52550557	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015136.2	+1	reviewed	e40-1	1.000	76	0%	108	45.4%	0	-	-	-	-	-
NEK4	6787	genome.wustl.edu	37	3	52773525	52773525	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003157.3	-1	validated	p.R740Q	1.000	319	0.6%	433	43.4%	13	46.1%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ITIH1	3697	genome.wustl.edu	37	3	52817081	52817081	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002215.2	+1	reviewed	p.A347S	0.993	100	0%	150	37.3%	0	-	possibly_damaging(0.885)	deleterious(0.01)	deleterious(0.752)	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
RFT1	91869	genome.wustl.edu	37	3	53153907	53153907	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_052859.3	-1	reviewed	p.R230I	0.000	249	0%	258	44.6%	0	-	benign(0.022)	tolerated(0.18)	neutral(0.057)	HMMPfam_Rft-1
PRKCD	5580	genome.wustl.edu	37	3	53226261	53226261	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006254.3	+1	reviewed	p.F670	0.888	92	0%	90	41.1%	214	47.1%	-	-	-	NULL
CACNA1D	776	genome.wustl.edu	37	3	53835434	53835434	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000720.2	+1	validated	p.R1817I	0.999	43	0%	51	43.1%	1	0%	possibly_damaging(0.71)	deleterious(0.05)	deleterious(0.602)	NULL
ENSG00000113811	0	genome.wustl.edu	37	3	53922452	53922452	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000488746	-1	known	p.F26L	1.000	369	0.3%	428	40.9%	14	64.2%	possibly_damaging(0.775)	tolerated(0.44)	neutral(0.301)	NULL
CACNA2D3	55799	genome.wustl.edu	37	3	54354493	54354493	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018398.2	+1	reviewed	p.V77I	0.993	165	0%	217	45.2%	0	-	benign(0.03)	tolerated(0.54)	neutral(0.009)	NULL
WNT5A	7474	genome.wustl.edu	37	3	55504179	55504179	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003392.3	-1	reviewed	p.C362R	1.000	39	0%	29	34.5%	47	31.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_wnt,HMMSmart_SM00097
WNT5A	7474	genome.wustl.edu	37	3	55508583	55508583	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003392.3	-1	reviewed	p.E156K	1.000	5	0.000	10	0.400	21	0%	benign(0.188)	tolerated(0.12)	neutral(0.278)	HMMPfam_wnt,HMMSmart_SM00097
CCDC66	285331	genome.wustl.edu	37	3	56600787	56600787	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001141947.1	+1	validated	p.I237T	0.054	223	0%	255	46.3%	2	50%	benign(0)	tolerated(0.18)	neutral(0.056)	NULL
FAM208A	23272	genome.wustl.edu	37	3	56667265	56667265	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001112736.1	-1	validated	p.E1185G	1.000	217	0.5%	218	49.1%	1	0%	probably_damaging(0.99)	deleterious(0.03)	deleterious(0.806)	NULL
FAM208A	23272	genome.wustl.edu	37	3	56680718	56680718	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001112736.1	-1	validated	p.E683*	1.000	388	0%	546	46.3%	3	0%	-	-	-	NULL
FAM208A	23272	genome.wustl.edu	37	3	56694944	56694944	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001112736.1	-1	validated	p.E421V	1.000	423	0%	568	25.4%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
FAM208A	23272	genome.wustl.edu	37	3	56716708	56716708	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001112736.1	-1	validated	p.K109N	1.000	133	0%	172	40.1%	8	37.5%	probably_damaging(0.99)	deleterious(0.04)	deleterious(0.790)	NULL
IL17RD	54756	genome.wustl.edu	37	3	57132051	57132051	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017563.3	-1	validated	p.F560	0.717	141	0%	169	46.2%	4	50%	-	-	-	NULL
IL17RD	54756	genome.wustl.edu	37	3	57148808	57148808	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017563.3	-1	validated	p.V74	0.987	121	0%	168	44%	1	100%	-	-	-	NULL
DNAH12	201625	genome.wustl.edu	37	3	57344933	57344933	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_178504.4	-1	validated	p.Y2702H	1.000	165	0%	229	44.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Dynein_heavy
DNAH12	201625	genome.wustl.edu	37	3	57419553	57419553	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_178504.4	-1	validated	p.F1530C	1.000	162	0.6%	218	41.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH12	201625	genome.wustl.edu	37	3	57443893	57443893	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_178504.4	-1	validated	p.E973*	0.998	259	0.4%	328	45.7%	0	-	-	-	-	HMMPfam_DHC_N2
DNAH12	201625	genome.wustl.edu	37	3	57454595	57454595	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_178504.4	-1	validated	p.K739	1.000	338	0.3%	327	34.3%	0	-	-	-	-	HMMPfam_DHC_N2
DNAH12	201625	genome.wustl.edu	37	3	57458364	57458364	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_178504.4	-1	validated	p.V562A	0.961	202	0%	228	43.4%	0	-	benign(0.001)	tolerated(0.48)	neutral(0.011)	NULL
DNAH12	201625	genome.wustl.edu	37	3	57475240	57475240	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_178504.4	-1	validated	p.E504K	0.994	290	0%	260	39.2%	0	-	benign(0)	tolerated(0.78)	neutral(0.001)	NULL
PDE12	201626	genome.wustl.edu	37	3	57542790	57542790	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_177966.5	+1	validated	p.T228	0.825	120	0%	161	46%	20	30%	-	-	-	NULL
FAM116A	201627	genome.wustl.edu	37	3	57616518	57616518	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152678.2	-1	validated	p.E481*	1.000	311	0%	372	22%	2	0%	-	-	-	HMMPfam_DUF1630
FLNB	2317	genome.wustl.edu	37	3	58094270	58094270	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001457.3	+1	reviewed	p.G676V	1.000	151	0%	212	44.3%	47	40.4%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_IG_FLMN,superfamily_Ig_E-set,HMMPfam_Filamin
ABHD6	57406	genome.wustl.edu	37	3	58255130	58255130	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020676.5	+1	validated	p.S120F	1.000	91	0%	134	36.6%	9	33.3%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_Abhydrolase_1,superfamily_SSF53474
CADPS	8618	genome.wustl.edu	37	3	62451072	62451072	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000473635	-1	known	p.G194E	0.991	194	0%	234	41.5%	3	0%	-	-	-	NULL
CADPS	8618	genome.wustl.edu	37	3	62467423	62467423	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003716.3	-1	reviewed	p.W1050R	1.000	218	0%	340	40.9%	0	-	possibly_damaging(0.667)	deleterious(0.01)	deleterious(0.641)	NULL
CADPS	8618	genome.wustl.edu	37	3	62522216	62522216	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000468271	-1	known	p.S14Y	1.000	421	0%	512	36.9%	1	0%	-	-	-	NULL
CADPS	8618	genome.wustl.edu	37	3	62739272	62739272	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003716.3	-1	reviewed	p.I244	1.000	60	0%	71	50.7%	0	-	-	-	-	NULL
ATXN7	6314	genome.wustl.edu	37	3	63968651	63968651	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001128149.2	+1	reviewed	p.I350T	1.000	181	0%	242	46.3%	1	100%	benign(0.198)	deleterious(0.02)	neutral(0.402)	HMMPfam_SCA7
ADAMTS9	56999	genome.wustl.edu	37	3	64636717	64636717	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_182920.1	-1	reviewed	p.R480Q	1.000	272	0%	315	38.1%	6	16.6%	probably_damaging(0.977)	tolerated(0.46)	neutral(0.431)	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"
MAGI1	9223	genome.wustl.edu	37	3	65342585	65342585	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001033057.1	-1	reviewed	p.S1286L	0.799	155	0%	359	47.4%	20	30%	benign(0.184)	tolerated(0.35)	neutral(0.038)	NULL
LMOD3	56203	genome.wustl.edu	37	3	69169181	69169181	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_198271.3	-1	validated	p.E109*	0.000	224	0%	283	49.1%	0	-	-	-	-	NULL
MITF	4286	genome.wustl.edu	37	3	70014376	70014376	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_198159.2	+1	reviewed	p.E514*	1.000	109	0%	131	45%	9	22.2%	-	-	-	NULL
FOXP1	27086	genome.wustl.edu	37	3	71050158	71050158	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032682.4	-1	reviewed	p.V343L	1.000	307	0%	409	45.5%	6	16.6%	probably_damaging(0.965)	deleterious(0.05)	deleterious(0.752)	NULL
SHQ1	55164	genome.wustl.edu	37	3	72873606	72873606	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018130.2	-1	validated	p.K232N	0.969	281	0%	417	17%	8	12.5%	benign(0.094)	tolerated(0.42)	neutral(0.021)	HMMPfam_SHQ1
ROBO2	6092	genome.wustl.edu	37	3	77629268	77629268	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001128929.1	+1	reviewed	p.R814W	0.859	143	0%	198	46%	21	33.3%	-	-	-	NULL
ROBO1	6091	genome.wustl.edu	37	3	78680323	78680323	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002941.3	-1	reviewed	p.S1205Y	0.994	535	0.2%	795	42.8%	29	20.6%	possibly_damaging(0.762)	tolerated(0.12)	deleterious(0.543)	NULL
GBE1	2632	genome.wustl.edu	37	3	81692042	81692042	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000264326	-1	known	p.K294N	1.000	190	0%	241	47.7%	30	50%	possibly_damaging(0.432)	tolerated(0.22)	neutral(0.183)	HMMSmart_SM00642,superfamily_(Trans)glycosidases
POU1F1	5449	genome.wustl.edu	37	3	87309193	87309193	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001122757.1	-1	reviewed	p.E269*	1.000	181	0%	247	14.6%	0	-	-	-	-	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like
ZNF654	55279	genome.wustl.edu	37	3	88188677	88188677	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018293.2	+1	validated	p.N73H	0.323	117	0%	171	43.9%	3	66.6%	probably_damaging(0.99)	tolerated(0.11)	deleterious(0.713)	NULL
EPHA3	2042	genome.wustl.edu	37	3	89390923	89390923	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005233.5	+1	reviewed	p.R330I	1.000	129	0%	135	37%	0	-	probably_damaging(0.987)	deleterious(0.01)	deleterious(0.842)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
EPHA3	2042	genome.wustl.edu	37	3	89528618	89528618	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005233.5	+1	reviewed	p.E973G	1.000	110	0%	156	39.7%	0	-	possibly_damaging(0.661)	deleterious(0.04)	deleterious(0.583)	HMMSmart_SM00454,superfamily_SAM/Pointed domain,HMMPfam_SAM_2
PROS1	5627	genome.wustl.edu	37	3	93619687	93619687	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000313.3	-1	reviewed	p.E230K	0.081	273	0%	321	46.7%	2	0%	benign(0.002)	tolerated(0.42)	neutral(0.014)	HMMSmart_EGF_CA,PatternScan_EGF_2,HMMPfam_EGF_CA,superfamily_SSF57196
PROS1	5627	genome.wustl.edu	37	3	93624721	93624721	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000313.3	-1	reviewed	p.G170C	1.000	254	0%	215	45.6%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMSmart_EGF_CA,PatternScan_EGF_CA,superfamily_SSF57196
CRYBG3	131544	genome.wustl.edu	37	3	97598905	97598905	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_153605.2	+1	validated	p.S374Y	0.987	185	0%	253	45.1%	0	-	benign(0.029)	deleterious(0)	neutral(0.446)	HMMSmart_SM00247,superfamily_gamma-Crystallin-like
GABRR3	200959	genome.wustl.edu	37	3	97705550	97705550	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000329044	-1	known	p.F233L	0.996	144	0%	198	46.5%	0	-	benign(0.218)	tolerated(0.22)	neutral(0.064)	HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore
OR5H14	403273	genome.wustl.edu	37	3	97868537	97868537	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001005514.1	+1	provisional	p.S103L	0.000	313	0%	424	46.2%	0	-	benign(0.011)	tolerated(0.23)	neutral(0.042)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
GPR15	2838	genome.wustl.edu	37	3	98251531	98251531	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005290.1	+1	provisional	p.I218	0.062	289	0%	366	15%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
CPOX	1371	genome.wustl.edu	37	3	98309955	98309955	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000097.5	-1	reviewed	p.E201K	1.000	310	0%	357	40.9%	9	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Coprogen_oxidas,superfamily_Coprogen_oxidas
FILIP1L	11259	genome.wustl.edu	37	3	99567982	99567982	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_182909.2	-1	validated	p.S846	1.000	184	0%	188	45.2%	9	0%	-	-	-	NULL
C3orf26	84319	genome.wustl.edu	37	3	99879320	99879320	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032359.3	+1	validated	p.T67N	0.000	192	0%	234	42.3%	4	0%	benign(0.026)	tolerated(0.39)	neutral(0.017)	NULL
LNP1	348801	genome.wustl.edu	37	3	100170730	100170730	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001085451.1	+1	validated	p.I108	0.952	204	0%	215	43.3%	2	50%	-	-	-	NULL
GPR128	84873	genome.wustl.edu	37	3	100387893	100387893	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032787.2	+1	validated	p.D694Y	0.000	174	0%	219	49.8%	0	-	possibly_damaging(0.624)	deleterious(0.02)	deleterious(0.601)	HMMPfam_7tm_2
ABI3BP	25890	genome.wustl.edu	37	3	100470399	100470399	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015429.3	-1	validated	p.E1037*	1.000	126	0%	192	42.7%	6	33.3%	-	-	-	NULL
ABI3BP	25890	genome.wustl.edu	37	3	100513809	100513809	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015429.3	-1	validated	p.I616L	0.934	258	0%	313	40.9%	5	60%	possibly_damaging(0.887)	tolerated(0.42)	neutral(0.361)	NULL
ABI3BP	25890	genome.wustl.edu	37	3	100527025	100527025	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000495591	-1	known	p.E607*	0.995	624	0%	762	16.9%	12	0%	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	NULL
RG9MTD1	54931	genome.wustl.edu	37	3	101284608	101284608	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017819.2	+1	provisional	p.R328Q	0.993	83	0%	88	39.8%	13	15.3%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_tRNA_m1G_MT
ZBTB11	27107	genome.wustl.edu	37	3	101390177	101390177	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014415.3	-1	validated	p.S192Y	1.000	183	0%	278	38.1%	8	62.5%	probably_damaging(0.995)	deleterious(0.04)	deleterious(0.806)	superfamily_BTB/POZ_fold
CBLB	868	genome.wustl.edu	37	3	105397403	105397403	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_170662.3	-1	validated	p.F814C	1.000	188	0%	257	45.5%	26	50%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
CCDC54	84692	genome.wustl.edu	37	3	107096675	107096675	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032600.2	+1	provisional	p.F81L	0.000	126	0%	176	44.3%	1	100%	benign(0)	tolerated(1)	-	NULL
HHLA2	11148	genome.wustl.edu	37	3	108072354	108072354	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007072.2	+1	provisional	p.L49I	0.791	102	0%	118	44.1%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
MYH15	22989	genome.wustl.edu	37	3	108117950	108117950	+	Missense_Mutation	SNP	G	G	A	rs187218353	by1000genomes	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014981.1	-1	validated	p.S1654F	0.000	111	0%	148	45.9%	0	-	possibly_damaging(0.817)	deleterious(0.02)	deleterious(0.692)	HMMPfam_Myosin_tail_1
KIAA1524	57650	genome.wustl.edu	37	3	108295182	108295182	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020890.2	-1	validated	p.F277C	1.000	176	0%	202	17.3%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_ARM repeat
MORC1	27136	genome.wustl.edu	37	3	108818304	108818304	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014429.3	-1	reviewed	p.M108I	1.000	289	0%	324	41.7%	0	-	probably_damaging(0.978)	deleterious(0.01)	deleterious(0.826)	superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
PLCXD2	257068	genome.wustl.edu	37	3	111439589	111439589	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000312791	+1	known	p.D296Y	1.000	221	0.5%	247	42.5%	0	-	-	-	-	superfamily_PLC-like phosphodiesterases
TMPRSS7	344805	genome.wustl.edu	37	3	111797644	111797644	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001042575.2	+1	validated	p.T634	0.012	118	0%	161	38.5%	0	-	-	-	-	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
SLC9A10	285335	genome.wustl.edu	37	3	111927206	111927206	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_183061.1	-1	validated	p.R602H	0.000	138	0%	180	42.8%	0	-	benign(0.017)	tolerated(0.32)	neutral(0.025)	superfamily_Voltage-gated potassium channels
CCDC80	151887	genome.wustl.edu	37	3	112349024	112349024	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000461431	-1	known	p.L55I	1.000	264	0.4%	380	44.2%	14	14.2%	-	-	-	NULL
GTPBP8	29083	genome.wustl.edu	37	3	112714105	112714105	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014170.2	+1	validated	p.R187*	1.000	121	0%	174	41.4%	0	-	-	-	-	HMMPfam_MMR_HSR1,superfamily_P-loop containing nucleoside triphosphate hydrolases
C3orf17	25871	genome.wustl.edu	37	3	112736430	112736430	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015412.3	-1	validated	p.V42	0.795	193	0%	293	26.6%	10	30%	-	-	-	NULL
WDR52	55779	genome.wustl.edu	37	3	113082108	113082108	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018338.3	-1	validated	p.E940*	1.000	266	0%	327	44.6%	3	66.6%	-	-	-	NULL
WDR52	55779	genome.wustl.edu	37	3	113145025	113145025	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018338.3	-1	validated	p.S118L	0.871	300	0.3%	347	41.8%	1	0%	possibly_damaging(0.9)	deleterious(0)	deleterious(0.801)	NULL
SPICE1	152185	genome.wustl.edu	37	3	113212951	113212951	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_144718.3	-1	validated	p.E110D	1.000	265	0%	343	46.4%	2	50%	probably_damaging(0.991)	tolerated(0.3)	deleterious(0.473)	NULL
SPICE1	152185	genome.wustl.edu	37	3	113225453	113225453	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_144718.3	-1	validated	e1-1	0.997	318	0%	329	24.6%	0	-	-	-	-	-
KIAA2018	205717	genome.wustl.edu	37	3	113375883	113375883	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001009899.2	-1	validated	p.R1549Q	1.000	215	0%	289	47.8%	2	100%	probably_damaging(0.997)	tolerated(0.31)	deleterious(0.493)	NULL
KIAA2018	205717	genome.wustl.edu	37	3	113377932	113377932	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001009899.2	-1	validated	p.S866Y	0.266	137	0%	184	45.7%	2	0%	probably_damaging(0.97)	deleterious(0.01)	deleterious(0.818)	NULL
GRAMD1C	54762	genome.wustl.edu	37	3	113659167	113659167	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017577.4	+1	validated	p.R628Q	0.432	183	0%	261	47.1%	8	37.5%	benign(0.014)	tolerated(0.89)	neutral(0.001)	NULL
ZDHHC23	254887	genome.wustl.edu	37	3	113673236	113673236	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_173570.3	+1	validated	p.R284I	1.000	148	0%	190	16.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-DHHC
KIAA1407	57577	genome.wustl.edu	37	3	113729857	113729857	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020817.1	-1	predicted	p.L392P	1.000	174	0%	199	33.7%	5	20%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
LSAMP	4045	genome.wustl.edu	37	3	115529252	115529252	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002338.3	-1	reviewed	p.S310L	1.000	70	0%	71	33.8%	0	-	benign(0.069)	deleterious(0.03)	neutral(0.369)	NULL
LSAMP	4045	genome.wustl.edu	37	3	115805287	115805287	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002338.3	-1	reviewed	p.S91Y	1.000	133	0.8%	192	46.4%	1	0%	benign(0.126)	tolerated(0.06)	neutral(0.333)	HMMSmart_IG,HMMPfam_ig,superfamily_SSF48726
C3orf30	152405	genome.wustl.edu	37	3	118865522	118865522	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000460150	+1	known	p.*126R	0.000	32	0%	37	18.9%	0	-	-	-	-	NULL
ARHGAP31	57514	genome.wustl.edu	37	3	119132840	119132840	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020754.2	+1	reviewed	p.S688	0.000	112	0%	172	45.3%	1	0%	-	-	-	NULL
PLA1A	51365	genome.wustl.edu	37	3	119334899	119334899	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015900.2	+1	validated	p.F235	0.079	170	0%	251	43%	0	-	-	-	-	HMMPfam_Lipase,superfamily_alpha/beta-Hydrolases
PLA1A	51365	genome.wustl.edu	37	3	119337023	119337023	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015900.2	+1	validated	p.C304	0.917	252	0%	345	48.4%	0	-	-	-	-	HMMPfam_Lipase,superfamily_alpha/beta-Hydrolases
FSTL1	11167	genome.wustl.edu	37	3	120123703	120123703	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007085.4	-1	reviewed	p.L193R	1.000	442	0.2%	612	17.5%	74	13.5%	benign(0.022)	deleterious(0)	neutral(0.446)	superfamily_SSF47473
POLQ	10721	genome.wustl.edu	37	3	121206740	121206740	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_199420.3	-1	validated	p.E1680*	0.259	157	0%	149	44.3%	1	100%	-	-	-	NULL
FBXO40	51725	genome.wustl.edu	37	3	121341991	121341991	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016298.3	+1	validated	p.S572Y	0.436	69	0%	84	48.8%	0	-	benign(0.308)	tolerated(0.26)	neutral(0.130)	HMMPfam_F-box,superfamily_F-box domain
GOLGB1	2804	genome.wustl.edu	37	3	121414006	121414006	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004487.3	-1	validated	p.T1783	0.001	344	0%	482	45.6%	47	42.5%	-	-	-	NULL
GOLGB1	2804	genome.wustl.edu	37	3	121417267	121417267	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000489400	-1	known	p.S567L	0.278	110	0%	157	44.6%	4	25%	-	-	-	NULL
EAF2	55840	genome.wustl.edu	37	3	121573611	121573611	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018456.4	+1	validated	p.H93	1.000	161	0%	151	39.1%	1	100%	-	-	-	HMMPfam_EAF
CD86	942	genome.wustl.edu	37	3	121838308	121838308	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_175862.3	+1	reviewed	p.R306I	0.000	263	0%	328	40.2%	0	-	benign(0.113)	deleterious(0)	neutral(0.454)	NULL
CASR	846	genome.wustl.edu	37	3	121980797	121980797	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000388.3	+1	reviewed	p.I305	0.896	42	0%	52	28.8%	0	-	-	-	-	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
PARP15	165631	genome.wustl.edu	37	3	122345718	122345718	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001113523.1	+1	validated	p.D426N	0.008	217	0%	223	39.9%	0	-	benign(0.15)	deleterious(0.04)	neutral(0.362)	superfamily_Macro domain-like
PARP14	54625	genome.wustl.edu	37	3	122418537	122418537	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017554.2	+1	validated	p.R379I	0.002	119	0%	161	47.8%	6	83.3%	benign(0.256)	tolerated(0.09)	neutral(0.323)	NULL
PDIA5	10954	genome.wustl.edu	37	3	122869201	122869201	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000316218	+1	known	p.F421L	1.000	39	0%	67	47.8%	72	26.3%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	superfamily_Thiordxn-like_fd,HMMPfam_Thioredoxin,PatternScan_THIOREDOXIN_1
ADCY5	111	genome.wustl.edu	37	3	123066658	123066658	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_183357.1	-1	validated	p.K459N	1.000	357	0%	464	41.4%	2	50%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMSmart_CYCc,superfamily_A/G_cyclase
MYLK	4638	genome.wustl.edu	37	3	123401112	123401112	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_053025.3	-1	reviewed	p.R1204Q	1.000	211	0%	271	49.8%	6	33.3%	probably_damaging(0.958)	deleterious(0.02)	deleterious(0.784)	NULL
KALRN	8997	genome.wustl.edu	37	3	124103809	124103809	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001024660.3	+1	reviewed	p.D628Y	1.000	63	0%	92	39.1%	18	72.2%	probably_damaging(0.98)	deleterious(0.03)	deleterious(0.788)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
MUC13	56667	genome.wustl.edu	37	3	124632489	124632489	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033049.2	-1	validated	p.A334V	0.000	87	0%	94	31.9%	6	50%	benign(0.01)	tolerated(0.29)	neutral(0.030)	HMMSmart_SM00181
HEG1	57493	genome.wustl.edu	37	3	124728655	124728655	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020733.1	-1	validated	p.C1029	0.999	153	0%	217	42.9%	12	25%	-	-	-	HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin
SNX4	8723	genome.wustl.edu	37	3	125216743	125216743	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003794.2	-1	reviewed	p.L162I	1.000	108	0%	133	35.3%	13	38.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain
OSBPL11	114885	genome.wustl.edu	37	3	125271408	125271408	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_022776.4	-1	reviewed	p.R424I	1.000	154	0.6%	224	42.9%	15	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Oxysterol_BP
MIR548I1	100302204	genome.wustl.edu	37	3	125509337	125509337	+	RNA	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000408810	-1	known	NULL	0.008	107	0%	183	41%	1	0%	-	-	-	-
SLC41A3	54946	genome.wustl.edu	37	3	125726032	125726032	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001008485.1	-1	validated	p.R431W	0.999	64	0%	81	44.4%	93	44%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	PatternScan_PEROXIDASE_2
SLC41A3	54946	genome.wustl.edu	37	3	125775242	125775242	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001008487.1	-1	validated	p.L52V	0.976	77	1.3%	113	44.2%	1	0%	benign(0.024)	tolerated(0.25)	neutral(0.038)	NULL
KLF15	28999	genome.wustl.edu	37	3	126071738	126071738	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014079.3	-1	validated	p.E10K	1.000	16	0%	14	42.9%	2	0%	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	NULL
CCDC37	348807	genome.wustl.edu	37	3	126153223	126153223	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_182628.2	+1	validated	p.R543G	0.329	18	0%	25	64%	6	50%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
UROC1	131669	genome.wustl.edu	37	3	126236523	126236523	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_144639.2	-1	reviewed	p.R14W	0.005	32	0%	51	39.2%	0	-	benign(0.198)	deleterious(0.01)	neutral(0.425)	NULL
PLXNA1	5361	genome.wustl.edu	37	3	126707994	126707994	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032242.3	+1	validated	p.F163	0.986	12	0%	14	42.9%	29	51.7%	-	-	-	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain
PLXNA1	5361	genome.wustl.edu	37	3	126732949	126732949	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032242.3	+1	validated	p.Q777H	1.000	41	0%	90	15.6%	32	31.2%	benign(0.039)	tolerated(0.27)	neutral(0.036)	NULL
PLXNA1	5361	genome.wustl.edu	37	3	126737359	126737359	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032242.3	+1	validated	p.E1272K	1.000	31	0%	37	48.6%	43	27.9%	benign(0.127)	deleterious(0)	neutral(0.455)	NULL
PODXL2	50512	genome.wustl.edu	37	3	127390312	127390312	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015720.2	+1	validated	p.C487	1.000	33	0%	57	36.8%	159	43.3%	-	-	-	HMMPfam_CD34_antigen
RPN1	6184	genome.wustl.edu	37	3	128341018	128341018	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002950.3	-1	reviewed	p.L544M	0.982	114	0.9%	158	29.7%	496	30.4%	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	NULL
ACAD9	28976	genome.wustl.edu	37	3	128603555	128603555	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014049.4	+1	reviewed	p.F70L	0.259	310	0%	294	41.2%	1	0%	unknown(0)	-	-	HMMPfam_Acyl-CoA_dh_N,superfamily_AcylCoA_dehyd_NM
KIAA1257	57501	genome.wustl.edu	37	3	128694621	128694621	+	Splice_Site	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020741.2	-1	predicted	e6+1	0.872	359	0%	411	42.8%	0	-	-	-	-	-
KIAA1257	57501	genome.wustl.edu	37	3	128695906	128695906	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020741.2	-1	predicted	p.S271F	0.236	252	0%	316	40.8%	0	-	benign(0.001)	deleterious(0)	neutral(0.445)	NULL
CCDC48	79825	genome.wustl.edu	37	3	128753055	128753055	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024768.2	+1	validated	p.F7	0.006	75	0%	79	44.3%	7	0%	-	-	-	NULL
RHO	6010	genome.wustl.edu	37	3	129247648	129247648	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000539.3	+1	reviewed	p.F24	1.000	70	0%	102	18.6%	1	0%	-	-	-	HMMPfam_Rhodopsin_N,superfamily_SSF81321
COL6A5	256076	genome.wustl.edu	37	3	130092531	130092531	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_153264.5	+1	validated	p.L17S	0.001	202	0%	199	43.7%	0	-	probably_damaging(0.965)	-	-	NULL
COL6A5	256076	genome.wustl.edu	37	3	130107629	130107629	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_153264.5	+1	validated	p.E690*	0.909	92	0%	111	15.3%	0	-	-	-	-	HMMPfam_VWA,HMMSmart_VWA,superfamily_SSF53300
ATP2C1	27032	genome.wustl.edu	37	3	130714897	130714897	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001001486.1	+1	reviewed	p.E690K	1.000	95	0%	113	46.9%	94	39.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Calcium ATPase transmembrane domain M
LOC100289095	100289095	genome.wustl.edu	37	3	131245421	131245421	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_002342398.1	+1	model	p.T40M	0.454	58	0%	82	35.4%	5	0%	-	-	-	NULL
DNAJC13	23317	genome.wustl.edu	37	3	132172243	132172243	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015268.3	+1	validated	p.L213F	1.000	130	0%	161	46%	2	100%	benign(0.217)	deleterious(0.03)	neutral(0.386)	NULL
DNAJC13	23317	genome.wustl.edu	37	3	132182620	132182620	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015268.3	+1	validated	p.A617	1.000	188	0%	274	48.2%	5	20%	-	-	-	superfamily_ARM repeat
DNAJC13	23317	genome.wustl.edu	37	3	132221281	132221281	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015268.3	+1	validated	p.G1562D	1.000	281	0%	293	43.3%	6	66.6%	probably_damaging(0.965)	deleterious(0)	deleterious(0.851)	superfamily_ARM repeat
NPHP3	27031	genome.wustl.edu	37	3	132400777	132400777	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_153240.3	-1	reviewed	p.F1324L	0.987	281	0%	331	17.5%	4	0%	benign(0)	tolerated(0.18)	neutral(0.056)	NULL
TMEM108	66000	genome.wustl.edu	37	3	133099396	133099396	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001136469.1	+1	validated	p.R281C	0.006	13	0%	25	52%	1	100%	possibly_damaging(0.544)	tolerated(0.06)	deleterious(0.507)	NULL
TF	7018	genome.wustl.edu	37	3	133467321	133467321	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001063.3	+1	reviewed	p.K37E	0.985	186	0%	239	41.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Transferrin,HMMSmart_SM00094,superfamily_Periplasmic binding protein-like II
TF	7018	genome.wustl.edu	37	3	133473352	133473352	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001063.3	+1	reviewed	p.F113L	0.010	139	0%	147	43.5%	0	-	benign(0.05)	tolerated(0.65)	neutral(0.006)	HMMPfam_Transferrin,HMMSmart_SM00094,superfamily_Periplasmic binding protein-like II
SLCO2A1	6578	genome.wustl.edu	37	3	133661502	133661502	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005630.2	-1	validated	p.F524	0.977	245	0%	321	15.9%	14	7.1%	-	-	-	HMMPfam_OATP,superfamily_MFS_gen_substrate_transporter
RYK	6259	genome.wustl.edu	37	3	133926324	133926324	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000460933	-1	known	p.E192*	1.000	283	0%	322	40.4%	9	100%	benign(0.001)	tolerated(0.23)	neutral(0.042)	NULL
CEP63	80254	genome.wustl.edu	37	3	134265012	134265012	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_025180.3	+1	reviewed	p.E271*	1.000	128	0%	151	45%	1	0%	-	-	-	NULL
CEP63	80254	genome.wustl.edu	37	3	134269061	134269061	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_025180.3	+1	reviewed	p.A447T	0.929	153	0%	211	43.6%	11	54.5%	benign(0.001)	tolerated(0.4)	neutral(0.016)	NULL
EPHB1	2047	genome.wustl.edu	37	3	134977865	134977865	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004441.4	+1	reviewed	p.R953K	1.000	155	0%	188	46.8%	2	0%	probably_damaging(0.979)	tolerated(0.26)	neutral(0.456)	HMMPfam_SAM_1,HMMSmart_SM00454,superfamily_SAM/Pointed domain
PPP2R3A	5523	genome.wustl.edu	37	3	135789364	135789364	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000492624	+1	known	p.S132P	1.000	234	0%	277	41.5%	8	25%	-	-	-	superfamily_EF-hand
MSL2	55167	genome.wustl.edu	37	3	135870724	135870724	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018133.3	-1	validated	p.P333	1.000	189	0%	266	48.9%	7	42.8%	-	-	-	NULL
IL20RB	53833	genome.wustl.edu	37	3	136699423	136699423	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_144717.2	+1	validated	p.V68	0.305	351	0%	411	41.8%	1	100%	-	-	-	HMMPfam_fn3,superfamily_Fibronectin type III
DZIP1L	199221	genome.wustl.edu	37	3	137807238	137807238	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_173543.2	-1	validated	p.E328K	0.992	48	0%	69	23.2%	0	-	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	NULL
NME9	347736	genome.wustl.edu	37	3	138022367	138022367	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_178130.2	-1	provisional	p.D243Y	0.000	155	0%	165	39.4%	2	50%	benign(0.267)	tolerated(0.14)	neutral(0.278)	NULL
ESYT3	83850	genome.wustl.edu	37	3	138153907	138153907	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_031913.3	+1	validated	p.F89L	0.995	12	0%	21	42.9%	1	0%	benign(0.002)	tolerated(0.91)	-	NULL
CEP70	80321	genome.wustl.edu	37	3	138290143	138290143	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024491.2	-1	validated	p.K42I	0.999	234	0%	231	46.3%	18	61.1%	probably_damaging(0.989)	deleterious(0.05)	deleterious(0.785)	NULL
PRR23B	389151	genome.wustl.edu	37	3	138738769	138738769	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001013650.2	-1	validated	p.H245	0.000	41	0%	63	54%	0	-	-	-	-	HMMPfam_DUF2476
COPB2	9276	genome.wustl.edu	37	3	139085575	139085575	+	Silent	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004766.2	-1	validated	p.L573	0.922	111	0%	177	45.8%	187	43.8%	-	-	-	HMMPfam_Coatomer_WDAD,superfamily_Amine_DH_B_like
CLSTN2	64084	genome.wustl.edu	37	3	140122641	140122641	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_022131.2	+1	validated	p.E135K	0.996	33	0%	59	40.7%	3	0%	benign(0.045)	deleterious(0.02)	neutral(0.386)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
CLSTN2	64084	genome.wustl.edu	37	3	140123437	140123437	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_022131.2	+1	validated	p.F156L	1.000	61	0%	90	48.9%	2	0%	probably_damaging(0.977)	deleterious(0.02)	deleterious(0.802)	HMMSmart_SM00112,superfamily_Cadherin-like
GK5	256356	genome.wustl.edu	37	3	141891222	141891222	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001039547.2	-1	validated	p.R407Q	1.000	204	0%	270	39.3%	8	37.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	PatternScan_FGGY_KINASES_2,HMMPfam_FGGY_C,superfamily_Actin-like ATPase domain
ATR	545	genome.wustl.edu	37	3	142242849	142242849	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001184.3	-1	reviewed	p.D1380Y	1.000	223	0%	271	40.6%	3	66.6%	benign(0.132)	tolerated(0.05)	neutral(0.356)	superfamily_ARM repeat
TRPC1	7220	genome.wustl.edu	37	3	142503718	142503718	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003304.4	+1	validated	p.R344I	1.000	303	0%	473	42.7%	0	-	benign(0.082)	tolerated(0.05)	neutral(0.351)	NULL
PLSCR1	5359	genome.wustl.edu	37	3	146251312	146251312	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000448787	-1	known	p.R5Q	0.001	392	0%	379	43%	7	28.5%	unknown(0)	deleterious(0)	-	NULL
CPB1	1360	genome.wustl.edu	37	3	148552384	148552384	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001871.2	+1	reviewed	p.L83I	0.976	153	0%	222	42.8%	0	-	probably_damaging(0.967)	tolerated(0.11)	deleterious(0.680)	HMMPfam_Propep_M14,superfamily_Protease propeptides/inhibitors
EIF2A	83939	genome.wustl.edu	37	3	150299521	150299521	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032025.3	+1	validated	p.K538N	1.000	134	0%	184	44%	15	33.3%	possibly_damaging(0.696)	deleterious(0.01)	deleterious(0.655)	NULL
GPR87	53836	genome.wustl.edu	37	3	151012145	151012145	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_023915.3	-1	validated	p.E297*	1.000	206	0%	240	85.8%	1	100%	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
IGSF10	285313	genome.wustl.edu	37	3	151156050	151156050	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_178822.4	-1	validated	p.N2100S	0.935	311	0%	350	44.3%	2	0%	benign(0.122)	tolerated(0.68)	neutral(0.012)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
IGSF10	285313	genome.wustl.edu	37	3	151164689	151164689	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_178822.4	-1	validated	p.R1027I	0.872	96	0%	133	45.1%	0	-	possibly_damaging(0.945)	deleterious(0)	deleterious(0.834)	NULL
IGSF10	285313	genome.wustl.edu	37	3	151164891	151164891	+	Nonsense_Mutation	SNP	C	C	A	rs35983399	byCluster;byFrequency;by1000genomes	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_178822.4	-1	validated	p.E960*	0.000	187	0%	294	45.2%	3	66.6%	-	-	-	NULL
AADACL2	344752	genome.wustl.edu	37	3	151475239	151475239	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_207365.3	+1	validated	p.R355*	0.027	106	0%	145	47.6%	0	-	-	-	-	HMMPfam_Abhydrolase_3,superfamily_alpha/beta-Hydrolases
AADAC	13	genome.wustl.edu	37	3	151535277	151535277	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001086.2	+1	reviewed	p.N88D	0.000	234	0%	309	47.2%	4	0%	benign(0)	tolerated(0.36)	neutral(0.020)	superfamily_alpha/beta-Hydrolases
MME	4311	genome.wustl.edu	37	3	154866379	154866379	+	Missense_Mutation	SNP	A	A	G	rs76264142		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000902.3	+1	reviewed	p.Q513R	0.997	118	0%	160	44.4%	0	-	benign(0.257)	tolerated(0.63)	neutral(0.030)	"superfamily_Metalloproteases (""zincins"") catalytic domain"
PLCH1	23007	genome.wustl.edu	37	3	155199291	155199291	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001130960.1	-1	validated	p.K1516N	1.000	63	0%	82	39%	15	53.3%	benign(0.147)	deleterious(0)	neutral(0.458)	NULL
SLC33A1	9197	genome.wustl.edu	37	3	155551733	155551733	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004733.2	-1	reviewed	p.P354H	1.000	181	0%	201	50.2%	17	64.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_MFS general substrate transporter
SLC33A1	9197	genome.wustl.edu	37	3	155571238	155571238	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004733.2	-1	reviewed	p.F183L	1.000	85	0%	97	39.2%	14	50%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_MFS general substrate transporter
GMPS	8833	genome.wustl.edu	37	3	155611436	155611436	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003875.2	+1	reviewed	p.E53*	1.000	155	0%	213	45.5%	16	6.2%	-	-	-	HMMPfam_GATase,superfamily_Class I glutamine amidotransferase-like
CCNL1	57018	genome.wustl.edu	37	3	156866200	156866200	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020307.2	-1	validated	p.R471C	1.000	334	0%	432	37%	69	43.4%	unknown(0)	tolerated(0.05)	-	NULL
C3orf55	152078	genome.wustl.edu	37	3	157288986	157288986	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001130002.1	+1	validated	p.R35K	0.004	463	0%	645	41.7%	1	100%	benign(0.15)	tolerated(1)	neutral(0.013)	NULL
IFT80	57560	genome.wustl.edu	37	3	160099334	160099334	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020800.1	-1	validated	p.K72N	1.000	178	0%	265	46.8%	1	0%	benign(0.255)	tolerated(0.34)	neutral(0.050)	superfamily_WD40_like
SMC4	10051	genome.wustl.edu	37	3	160142748	160142748	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001002800.1	+1	validated	p.L807V	0.947	175	0%	187	36.9%	32	46.8%	benign(0.103)	deleterious(0.02)	neutral(0.391)	HMMPfam_SMC_N,superfamily_P-loop containing nucleoside triphosphate hydrolases
TRIM59	286827	genome.wustl.edu	37	3	160156301	160156301	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_173084.2	-1	validated	p.R224I	0.970	192	0%	212	12.7%	0	-	possibly_damaging(0.91)	tolerated(0.09)	deleterious(0.659)	NULL
PPM1L	151742	genome.wustl.edu	37	3	160786805	160786805	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_139245.2	+1	provisional	p.R315*	0.998	87	0%	117	51.3%	0	-	-	-	-	HMMSmart_SM00331,HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMPfam_PP2C
MIR1263	100302148	genome.wustl.edu	37	3	163889339	163889339	+	RNA	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000408324	-1	known	NULL	0.058	28	0%	46	50%	0	-	-	-	-	-
SI	6476	genome.wustl.edu	37	3	164724650	164724650	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001041.3	-1	reviewed	p.D1454N	1.000	199	0%	256	52%	0	-	benign(0.06)	tolerated(0.64)	neutral(0.007)	HMMPfam_Glyco_hydro_31,superfamily_(Trans)glycosidases
SI	6476	genome.wustl.edu	37	3	164741519	164741519	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001041.3	-1	reviewed	p.D980Y	0.000	220	0%	318	44%	0	-	benign(0)	tolerated(0.63)	neutral(0.004)	HMMSmart_SM00018,superfamily_Trefoil
SI	6476	genome.wustl.edu	37	3	164748590	164748590	+	Silent	SNP	A	A	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001041.3	-1	reviewed	p.I934	0.012	121	0%	147	41.5%	0	-	-	-	-	HMMSmart_SM00018,superfamily_Trefoil
SLITRK3	22865	genome.wustl.edu	37	3	164908165	164908165	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014926.2	-1	validated	p.E152*	1.000	94	0%	101	43.6%	0	-	-	-	-	superfamily_SSF52058
BCHE	590	genome.wustl.edu	37	3	165491255	165491255	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000055.2	-1	reviewed	p.F575C	1.000	359	0%	498	14.5%	0	-	possibly_damaging(0.845)	deleterious(0)	deleterious(0.768)	HMMPfam_AChE_tetra
BCHE	590	genome.wustl.edu	37	3	165548191	165548191	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000055.2	-1	reviewed	p.A211T	1.000	168	0%	183	48.6%	0	-	possibly_damaging(0.895)	tolerated(0.28)	neutral(0.384)	HMMPfam_COesterase,superfamily_SSF53474
BCHE	590	genome.wustl.edu	37	3	165548830	165548830	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000055.2	-1	reviewed	e1-1	1.000	33	0%	44	27.3%	0	-	-	-	-	-
WDR49	151790	genome.wustl.edu	37	3	167319921	167319921	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_178824.3	-1	provisional	p.K82N	1.000	95	0%	108	47.2%	0	-	probably_damaging(0.991)	tolerated(0.11)	deleterious(0.716)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
MECOM	2122	genome.wustl.edu	37	3	168833245	168833245	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000494292	-1	known	p.V805	0.000	192	0%	238	45.8%	58	43.1%	-	-	-	NULL
SEC62	7095	genome.wustl.edu	37	3	169710399	169710399	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003262.3	+1	reviewed	p.L250I	1.000	232	0%	257	38.1%	58	41.3%	benign(0.066)	tolerated(1)	neutral(0.004)	HMMPfam_Sec62
PRKCI	5584	genome.wustl.edu	37	3	170016826	170016826	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002740.5	+1	reviewed	p.S544Y	1.000	210	0%	260	20.8%	8	37.5%	possibly_damaging(0.694)	deleterious(0)	deleterious(0.694)	HMMSmart_S_TK_X,superfamily_Kinase_like,HMMPfam_Pkinase_C
SKIL	6498	genome.wustl.edu	37	3	170078546	170078546	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005414.3	+1	validated	p.E143*	1.000	207	0%	258	40.3%	11	45.4%	-	-	-	HMMPfam_Ski_Sno,superfamily_Putative DNA-binding domain
SKIL	6498	genome.wustl.edu	37	3	170108956	170108956	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005414.3	+1	validated	p.D602Y	1.000	101	0%	114	34.2%	1	0%	probably_damaging(0.997)	tolerated(0.06)	deleterious(0.788)	NULL
RPL22L1	200916	genome.wustl.edu	37	3	170585926	170585926	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000430925	-1	known	p.I56T	1.000	259	0%	305	42.6%	1	0%	benign(0)	-	-	NULL
TNIK	23043	genome.wustl.edu	37	3	170841442	170841442	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015028.2	-1	validated	p.S688Y	1.000	388	0%	476	48.5%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
TNIK	23043	genome.wustl.edu	37	3	170856043	170856043	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015028.2	-1	validated	p.K515N	1.000	182	0%	199	53.8%	3	0%	probably_damaging(0.996)	tolerated(0.12)	deleterious(0.722)	NULL
TMEM212	389177	genome.wustl.edu	37	3	171571415	171571415	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000334567	+1	known	p.F106L	1.000	257	0%	365	20.3%	0	-	benign(0.368)	deleterious(0)	deleterious(0.561)	NULL
FNDC3B	64778	genome.wustl.edu	37	3	172098796	172098796	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001135095.1	+1	validated	p.I1072M	0.997	197	0%	266	16.5%	57	43.8%	possibly_damaging(0.567)	deleterious(0.01)	deleterious(0.600)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
NLGN1	22871	genome.wustl.edu	37	3	173996952	173996952	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014932.2	+1	reviewed	p.V387	0.997	312	0.3%	414	43.5%	0	-	-	-	-	HMMPfam_COesterase,superfamily_SSF53474
NAALADL2	254827	genome.wustl.edu	37	3	174974212	174974212	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_207015.2	+1	validated	p.D278N	1.000	169	0%	211	17.1%	2	0%	unknown(0)	deleterious(0)	-	superfamily_Transferrin receptor ectodomain apical domain
TBL1XR1	79718	genome.wustl.edu	37	3	176771652	176771652	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024665.4	-1	reviewed	p.N38S	1.000	326	0%	388	41%	26	57.6%	benign(0.092)	tolerated(0.33)	neutral(0.031)	NULL
ZMAT3	64393	genome.wustl.edu	37	3	178745563	178745563	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_022470.3	-1	reviewed	p.A143D	1.000	88	0%	101	59.4%	1	100%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
PIK3CA	5290	genome.wustl.edu	37	3	178917478	178917478	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006218.2	+1	reviewed	p.G118D	1.000	282	0%	323	39.6%	4	50%	probably_damaging(0.976)	deleterious(0.04)	deleterious(0.767)	superfamily_SSF54236
MRPL47	57129	genome.wustl.edu	37	3	179310468	179310468	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020409.2	-1	reviewed	p.R198L	0.999	281	0%	285	41.1%	30	56.6%	probably_damaging(0.999)	tolerated(0.12)	deleterious(0.751)	NULL
MRPL47	57129	genome.wustl.edu	37	3	179320488	179320488	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020409.2	-1	reviewed	p.E66*	1.000	193	0%	242	54.1%	3	0%	-	-	-	HMMPfam_MRP-L47
USP13	8975	genome.wustl.edu	37	3	179418828	179418828	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003940.2	+1	validated	p.D130N	1.000	246	0%	268	41%	1	0%	benign(0.362)	deleterious(0.04)	neutral(0.464)	NULL
USP13	8975	genome.wustl.edu	37	3	179426658	179426658	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003940.2	+1	validated	p.G240W	1.000	161	0%	233	39.9%	2	0%	possibly_damaging(0.938)	deleterious(0)	deleterious(0.828)	HMMPfam_zf-UBP,HMMSmart_ZnF_UBP
USP13	8975	genome.wustl.edu	37	3	179462921	179462921	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003940.2	+1	validated	p.S542I	1.000	237	0%	254	41.3%	3	66.6%	benign(0.248)	tolerated(0.09)	neutral(0.322)	HMMPfam_UCH,superfamily_SSF54001
CCDC39	339829	genome.wustl.edu	37	3	180372635	180372635	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_181426.1	-1	validated	p.R282I	0.889	535	0%	655	44.3%	0	-	benign(0.308)	deleterious(0.05)	neutral(0.442)	NULL
FXR1	8087	genome.wustl.edu	37	3	180667070	180667070	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005087.2	+1	reviewed	p.R190Q	1.000	262	0%	347	15%	34	14.7%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
MCCC1	56922	genome.wustl.edu	37	3	182737979	182737979	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020166.3	-1	reviewed	p.S639F	0.081	260	0%	298	11.4%	7	0%	benign(0.394)	deleterious(0.05)	deleterious(0.472)	superfamily_Hybrid_motif
LAMP3	27074	genome.wustl.edu	37	3	182872169	182872169	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014398.3	-1	validated	p.H20	0.000	240	0%	250	42%	0	-	-	-	-	NULL
MCF2L2	23101	genome.wustl.edu	37	3	182947565	182947565	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015078.2	-1	validated	p.Y645C	0.660	254	0%	288	44.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
MCF2L2	23101	genome.wustl.edu	37	3	183056597	183056597	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015078.2	-1	validated	p.T159	1.000	250	0%	337	44.5%	0	-	-	-	-	HMMSmart_SM00516
KLHL24	54800	genome.wustl.edu	37	3	183382757	183382757	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017644.3	+1	validated	p.N385T	1.000	234	0%	338	50.3%	23	82.6%	probably_damaging(0.983)	deleterious(0.02)	deleterious(0.812)	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
PARL	55486	genome.wustl.edu	37	3	183560170	183560170	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018622.5	-1	reviewed	p.N225H	1.000	162	0.6%	227	15.4%	31	6.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Rhomboid
ABCC5	10057	genome.wustl.edu	37	3	183667837	183667837	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005688.2	-1	reviewed	p.I1007	0.898	105	0%	139	45.3%	8	37.5%	-	-	-	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
HTR3D	200909	genome.wustl.edu	37	3	183750660	183750660	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000382489	+1	known	p.L14	0.614	100	0%	118	48.3%	0	-	-	-	-	NULL
HTR3C	170572	genome.wustl.edu	37	3	183778064	183778064	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_130770.2	+1	reviewed	p.D423G	1.000	191	0%	219	41.1%	0	-	probably_damaging(0.966)	deleterious(0)	deleterious(0.853)	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
DVL3	1857	genome.wustl.edu	37	3	183882976	183882976	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004423.3	+1	reviewed	p.K225	1.000	202	0%	273	43.6%	84	47.6%	-	-	-	NULL
VWA5B2	90113	genome.wustl.edu	37	3	183956443	183956443	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_138345.1	+1	provisional	p.R662W	1.000	47	0%	57	22.8%	15	53.3%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
ALG3	10195	genome.wustl.edu	37	3	183963027	183963027	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000446569	-1	known	p.P92S	0.982	62	0%	72	43.1%	93	51.6%	-	-	-	HMMPfam_ALG3
PSMD2	5708	genome.wustl.edu	37	3	184018174	184018174	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002808.3	+1	reviewed	p.R100H	1.000	117	0%	150	43.3%	118	46.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM-type_fold
EIF4G1	1981	genome.wustl.edu	37	3	184039537	184039537	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_182917.3	+1	reviewed	p.E389K	0.238	106	0%	126	43.7%	185	51.8%	possibly_damaging(0.95)	tolerated(0.27)	neutral(0.427)	NULL
EPHB3	2049	genome.wustl.edu	37	3	184290682	184290682	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004443.3	+1	reviewed	p.A192T	1.000	38	0%	41	41.5%	15	33.3%	possibly_damaging(0.911)	deleterious(0)	deleterious(0.807)	HMMPfam_Ephrin_lbd,HMMSmart_EPH_lbd,superfamily_Gal_bind_like
EHHADH	1962	genome.wustl.edu	37	3	184966213	184966213	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001966.3	-1	reviewed	p.K56T	0.016	423	0%	497	44.1%	2	100%	benign(0)	tolerated(1)	-	HMMPfam_ECH,superfamily_SSF52096
MAP3K13	9175	genome.wustl.edu	37	3	185191451	185191451	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004721.3	+1	reviewed	p.E778*	0.134	28	0%	48	47.9%	0	-	-	-	-	NULL
MAP3K13	9175	genome.wustl.edu	37	3	185198226	185198226	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004721.3	+1	reviewed	p.S903L	1.000	114	0%	144	44.4%	2	50%	probably_damaging(0.978)	deleterious(0)	deleterious(0.865)	NULL
LIPH	200879	genome.wustl.edu	37	3	185241916	185241916	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_139248.2	-1	reviewed	p.D221Y	1.000	303	0%	335	12.5%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Lipase,superfamily_SSF53474
SENP2	59343	genome.wustl.edu	37	3	185307946	185307946	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021627.2	+1	validated	p.R49I	1.000	59	0%	43	41.9%	3	66.6%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SENP2	59343	genome.wustl.edu	37	3	185335320	185335320	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021627.2	+1	validated	p.I388T	1.000	253	0%	234	50.4%	10	60%	benign(0.021)	deleterious(0.02)	neutral(0.384)	superfamily_SSF54001
DGKG	1608	genome.wustl.edu	37	3	185986640	185986640	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001346.2	-1	reviewed	p.K356E	1.000	26	0%	82	25.6%	0	-	probably_damaging(0.994)	tolerated(0.12)	deleterious(0.713)	HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,superfamily_Cysteine-rich domain
DGKG	1608	genome.wustl.edu	37	3	186038212	186038212	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001346.2	-1	reviewed	p.E13*	1.000	326	0%	394	43.9%	0	-	-	-	-	superfamily_EF-hand
DNAJB11	51726	genome.wustl.edu	37	3	186295578	186295578	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016306.4	+1	validated	p.N149D	1.000	148	0%	199	42.7%	40	57.5%	benign(0.035)	tolerated(0.21)	neutral(0.046)	superfamily_HSP40/DnaJ peptide-binding domain
TP63	8626	genome.wustl.edu	37	3	189586504	189586504	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003722.4	+1	reviewed	p.R376	1.000	130	0%	172	40.7%	1	0%	-	-	-	NULL
TP63	8626	genome.wustl.edu	37	3	189612036	189612036	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003722.4	+1	reviewed	p.A596	1.000	102	0%	149	47%	5	20%	-	-	-	HMMSmart_SM00454,superfamily_SAM/Pointed domain,HMMPfam_SAM_2
LEPREL1	55214	genome.wustl.edu	37	3	189705445	189705445	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018192.3	-1	validated	p.V323	0.997	128	0%	179	45.8%	7	42.8%	-	-	-	superfamily_TPR-like
TMEM207	131920	genome.wustl.edu	37	3	190147512	190147512	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_207316.1	-1	provisional	p.A105S	0.581	199	0%	284	44.7%	0	-	benign(0.328)	tolerated(0.24)	neutral(0.140)	NULL
IL1RAP	3556	genome.wustl.edu	37	3	190373891	190373891	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000317757	+1	known	p.S520Y	1.000	121	0%	157	40.8%	0	-	possibly_damaging(0.656)	deleterious(0.01)	deleterious(0.637)	HMMPfam_TIR,HMMSmart_TIR,superfamily_TIR
ATP13A5	344905	genome.wustl.edu	37	3	192993027	192993027	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_198505.2	-1	provisional	p.K1154T	0.998	249	0%	309	19.1%	0	-	possibly_damaging(0.932)	deleterious(0)	deleterious(0.823)	NULL
ATP13A4	84239	genome.wustl.edu	37	3	193158398	193158398	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000428352	-1	known	p.E463*	1.000	135	0%	204	41.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_HAD-like
ATP13A4	84239	genome.wustl.edu	37	3	193232548	193232548	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032279.2	-1	validated	p.V58A	0.993	118	0%	163	10.4%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
OPA1	4976	genome.wustl.edu	37	3	193360794	193360794	+	Silent	SNP	C	C	A	rs104893753	byCluster	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_130837.2	+1	reviewed	p.R421	1.000	238	0%	323	41.8%	12	41.6%	-	-	-	HMMPfam_Dynamin_N,HMMSmart_SM00053,superfamily_P-loop containing nucleoside triphosphate hydrolases
CPN2	1370	genome.wustl.edu	37	3	194062289	194062289	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001080513.2	-1	validated	p.F381	0.061	89	0%	125	42.4%	0	-	-	-	-	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_RNI-like
CPN2	1370	genome.wustl.edu	37	3	194062456	194062456	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001080513.2	-1	validated	p.T326A	0.000	36	0%	54	40.7%	0	-	benign(0)	tolerated(0.31)	neutral(0.027)	HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00364,superfamily_RNI-like
ATP13A3	79572	genome.wustl.edu	37	3	194157835	194157835	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024524.3	-1	validated	p.Q703H	1.000	313	0%	353	12.5%	7	14.2%	probably_damaging(1)	tolerated(0.22)	deleterious(0.542)	HMMPfam_Hydrolase,superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N,superfamily_Calcium ATPase transmembrane domain M
ATP13A3	79572	genome.wustl.edu	37	3	194180661	194180661	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024524.3	-1	validated	p.L89I	0.989	165	0%	215	45.6%	3	33.3%	benign(0.008)	tolerated(0.39)	neutral(0.016)	NULL
LOC651714	651714	genome.wustl.edu	37	3	195345674	195345674	+	RNA	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XR_078298.1	+1	model	NULL	0.010	105	0%	128	16.4%	9	0%	possibly_damaging(0.605)	deleterious(0)	deleterious(0.654)	-
MUC4	4585	genome.wustl.edu	37	3	195507782	195507782	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018406.5	-1	reviewed	p.D3429N	0.005	497	0.8%	618	28%	120	37.5%	possibly_damaging(0.509)	-	-	NULL
MUC4	4585	genome.wustl.edu	37	3	195508538	195508538	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018406.5	-1	reviewed	p.V3177I	0.005	241	0%	313	24.6%	73	5.4%	benign(0.095)	-	-	NULL
MUC4	4585	genome.wustl.edu	37	3	195517946	195517946	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018406.5	-1	reviewed	p.V169F	0.000	431	0%	557	43.6%	4	25%	possibly_damaging(0.811)	deleterious(0.04)	deleterious(0.654)	NULL
OSTalpha	200931	genome.wustl.edu	37	3	195960000	195960000	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152672.5	+1	validated	p.R318Q	0.998	131	0%	191	37.7%	6	50%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
SENP5	205564	genome.wustl.edu	37	3	196627274	196627274	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152699.4	+1	validated	p.V599	0.487	374	0%	434	15.7%	3	0%	-	-	-	HMMPfam_Peptidase_C48,superfamily_Cysteine proteinases
SENP5	205564	genome.wustl.edu	37	3	196650370	196650370	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152699.4	+1	validated	p.R657Q	0.999	435	0%	547	43.9%	4	0%	possibly_damaging(0.57)	deleterious(0.05)	deleterious(0.540)	HMMPfam_Peptidase_C48,superfamily_Cysteine proteinases
NCBP2	22916	genome.wustl.edu	37	3	196663950	196663950	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007362.3	-1	reviewed	p.R135W	1.000	208	0%	309	37.9%	155	44.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_RNA-binding domain RBD
DLG1	1739	genome.wustl.edu	37	3	196807941	196807941	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004087.2	-1	validated	p.S662Y	1.000	545	0%	629	17.6%	10	20%	possibly_damaging(0.435)	deleterious(0.01)	deleterious(0.547)	superfamily_SH3-domain
KIAA0226	9711	genome.wustl.edu	37	3	197427516	197427516	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001145642.2	-1	validated	p.S350L	0.996	72	0%	78	61.5%	10	30%	probably_damaging(0.999)	deleterious(0.05)	deleterious(0.836)	NULL
KIAA0226	9711	genome.wustl.edu	37	3	197427525	197427525	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001145642.2	-1	validated	p.R347H	1.000	72	0%	73	30.1%	12	58.3%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	NULL
FYTTD1	84248	genome.wustl.edu	37	3	197501072	197501072	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032288.6	+1	validated	p.R216I	1.000	290	0%	341	48.4%	37	48.6%	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	HMMPfam_FYTT
FYTTD1	84248	genome.wustl.edu	37	3	197505281	197505281	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032288.6	+1	validated	p.K268N	1.000	191	0%	258	13.2%	57	21%	probably_damaging(0.995)	tolerated(0.11)	deleterious(0.729)	HMMPfam_FYTT
ENSG00000211553	0	genome.wustl.edu	37	4	130305	130305	+	RNA	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000390127	+1	known	NULL	0.064	111	0%	127	39.4%	0	-	-	-	-	-
SLC26A1	10861	genome.wustl.edu	37	4	973204	973204	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_134425.1	-1	reviewed	p.R222I	0.045	286	0%	364	36%	2	50%	possibly_damaging(0.903)	-	-	NULL
RNF212	285498	genome.wustl.edu	37	4	1079723	1079723	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001131034.1	-1	validated	p.S108Y	0.476	133	0%	165	47.3%	0	-	probably_damaging(0.983)	tolerated(0.22)	deleterious(0.471)	NULL
CTBP1-AS1	92070	genome.wustl.edu	37	4	1244706	1244706	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000357591	+1	known	p.K115	0.000	43	0%	92	46.7%	18	33.3%	-	-	-	NULL
SLBP	7884	genome.wustl.edu	37	4	1701798	1701798	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006527.2	-1	reviewed	e4-1	1.000	434	0.2%	508	16.5%	0	-	-	-	-	-
TMEM129	92305	genome.wustl.edu	37	4	1719965	1719965	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001127266.1	-1	validated	p.E198	0.917	28	0%	25	24%	213	21.5%	-	-	-	HMMPfam_Tmpp129
TACC3	10460	genome.wustl.edu	37	4	1729774	1729774	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006342.1	+1	reviewed	p.E215	0.000	20	0%	24	50%	24	50%	-	-	-	NULL
WHSC1	7468	genome.wustl.edu	37	4	1941428	1941428	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001042424.2	+1	reviewed	p.R602W	1.000	214	0%	243	46.5%	34	55.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
WHSC1	7468	genome.wustl.edu	37	4	1978263	1978263	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001042424.2	+1	reviewed	p.R1228H	0.982	121	0%	135	14.1%	128	9.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
HAUS3	79441	genome.wustl.edu	37	4	2238105	2238105	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024511.5	-1	provisional	p.E476D	1.000	53	0%	83	43.4%	9	33.3%	possibly_damaging(0.686)	tolerated(0.33)	neutral(0.269)	NULL
FAM193A	8603	genome.wustl.edu	37	4	2733570	2733570	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003704.3	+1	validated	p.K1217R	1.000	143	0%	142	45.8%	52	57.6%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	NULL
TNIP2	79155	genome.wustl.edu	37	4	2746501	2746501	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024309.3	-1	validated	p.E277K	0.000	37	0%	34	41.2%	53	35.8%	benign(0.237)	tolerated(0.38)	neutral(0.041)	NULL
GRK4	2868	genome.wustl.edu	37	4	3009500	3009500	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_182982.2	+1	reviewed	p.E161*	1.000	298	0%	329	41%	0	-	-	-	-	HMMPfam_RGS,HMMSmart_SM00315,superfamily_Regulator of G-protein signaling RGS
GRK4	2868	genome.wustl.edu	37	4	3040128	3040128	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_182982.2	+1	reviewed	p.D524V	1.000	209	0%	239	23.8%	0	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMSmart_SM00133
HTT	3064	genome.wustl.edu	37	4	3210525	3210525	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002111.6	+1	reviewed	p.D2060N	1.000	129	0%	177	44.1%	34	52.9%	probably_damaging(0.998)	tolerated(1)	deleterious(0.474)	NULL
ADRA2C	152	genome.wustl.edu	37	4	3768724	3768724	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000683.3	+1	reviewed	p.D131N	1.000	50	0%	61	52.5%	228	5.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OTOP1	133060	genome.wustl.edu	37	4	4207848	4207848	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_177998.1	-1	provisional	p.L184I	0.818	254	0%	309	42.7%	0	-	probably_damaging(0.999)	tolerated(0.08)	deleterious(0.790)	HMMPfam_DUF270
LYAR	55646	genome.wustl.edu	37	4	4281195	4281195	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001145725.1	-1	validated	p.I136	1.000	123	0%	147	12.9%	4	0%	-	-	-	NULL
STX18	53407	genome.wustl.edu	37	4	4426919	4426919	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016930.2	-1	validated	p.E245*	1.000	246	0%	287	39.4%	351	4.8%	-	-	-	NULL
STX18	53407	genome.wustl.edu	37	4	4436548	4436548	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000503861	-1	known	p.V151M	0.065	536	0%	626	40.6%	204	62.2%	-	-	-	NULL
STK32B	55351	genome.wustl.edu	37	4	5170088	5170088	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018401.1	+1	provisional	p.Q57H	1.000	130	0%	216	51.9%	1	0%	benign(0.023)	tolerated(0.16)	neutral(0.060)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
EVC2	132884	genome.wustl.edu	37	4	5624673	5624673	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_147127.4	-1	reviewed	p.R698*	0.000	18	0%	36	27.8%	1	0%	-	-	-	NULL
EVC	2121	genome.wustl.edu	37	4	5811293	5811293	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_153717.2	+1	reviewed	p.P913S	0.990	74	0%	80	47.5%	0	-	possibly_damaging(0.44)	tolerated(0.81)	neutral(0.144)	NULL
JAKMIP1	152789	genome.wustl.edu	37	4	6081969	6081969	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001099433.1	-1	validated	p.D391G	0.999	43	0%	81	24.7%	1	0%	benign(0.026)	deleterious(0.01)	neutral(0.407)	NULL
TBC1D14	57533	genome.wustl.edu	37	4	7012484	7012484	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001113361.1	+1	validated	p.A541	0.064	220	0%	322	41.6%	15	53.3%	-	-	-	HMMPfam_TBC,HMMSmart_TBC
TADA2B	93624	genome.wustl.edu	37	4	7056116	7056116	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152293.2	+1	validated	p.E200K	1.000	25	0%	34	17.6%	46	26%	possibly_damaging(0.722)	tolerated(0.46)	neutral(0.274)	NULL
TADA2B	93624	genome.wustl.edu	37	4	7056664	7056664	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152293.2	+1	validated	p.Q382H	1.000	47	0%	54	50%	13	38.4%	possibly_damaging(0.443)	tolerated(0.16)	neutral(0.204)	NULL
ACOX3	8310	genome.wustl.edu	37	4	8368756	8368756	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003501.2	-1	validated	p.R679W	0.865	122	0.8%	178	19.1%	10	10%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ACOX,superfamily_Acyl-CoA dehydrogenase C-terminal domain-like
ENSG00000238726	0	genome.wustl.edu	37	4	9025195	9025195	+	RNA	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000408553	-1	novel	NULL	0.060	91	0%	117	38.5%	0	-	-	-	-	-
DEFB131	644414	genome.wustl.edu	37	4	9452100	9452100	+	Missense_Mutation	SNP	T	T	C	rs182857763	by1000genomes	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001040448.2	+1	validated	p.S25P	0.235	127	0%	132	36.4%	0	-	benign(0.005)	tolerated(0.36)	neutral(0.020)	NULL
DRD5	1816	genome.wustl.edu	37	4	9784117	9784117	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000798.4	+1	reviewed	p.R155H	0.940	20	0%	45	35.6%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
BOD1L	259282	genome.wustl.edu	37	4	13602068	13602068	+	Silent	SNP	G	G	A	rs139854434	by1000genomes	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_148894.2	-1	validated	p.F2152	0.011	54	0%	65	52.3%	11	63.6%	-	-	-	superfamily_SSF81995
BOD1L	259282	genome.wustl.edu	37	4	13612649	13612649	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_148894.2	-1	validated	p.R467Q	1.000	466	0.2%	586	41.1%	2	100%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	superfamily_SSF81995
CC2D2A	57545	genome.wustl.edu	37	4	15517516	15517516	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001080522.2	+1	reviewed	p.E302	1.000	82	0%	83	50.6%	4	25%	-	-	-	NULL
FBXL5	26234	genome.wustl.edu	37	4	15607391	15607391	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000513163	-1	known	p.E598*	1.000	141	0%	151	41.1%	74	44.5%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	superfamily_RNI-like
FGFBP2	83888	genome.wustl.edu	37	4	15964285	15964285	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_031950.3	-1	reviewed	p.V156	0.000	88	0%	104	41.3%	0	-	-	-	-	HMMPfam_FGF-BP1
LDB2	9079	genome.wustl.edu	37	4	16899996	16899996	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001290.3	-1	validated	p.R38I	1.000	185	0%	317	42.9%	12	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_LIM_bind
LCORL	254251	genome.wustl.edu	37	4	17885752	17885752	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000382226	-1	known	p.S467Y	1.000	122	0%	108	45.4%	1	100%	possibly_damaging(0.693)	deleterious(0.04)	deleterious(0.597)	NULL
LCORL	254251	genome.wustl.edu	37	4	17910893	17910893	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_153686.7	-1	reviewed	p.A169V	1.000	209	0%	340	45%	5	0%	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	NULL
SLIT2	9353	genome.wustl.edu	37	4	20270444	20270444	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004787.1	+1	provisional	p.R112I	1.000	308	0%	426	44.4%	1	0%	probably_damaging(0.981)	deleterious(0.03)	deleterious(0.790)	HMMSmart_SM00369,superfamily_L domain-like
SLIT2	9353	genome.wustl.edu	37	4	20541081	20541081	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004787.1	+1	provisional	p.R617Q	0.993	394	0%	492	47%	7	14.2%	benign(0.008)	tolerated(0.4)	neutral(0.016)	HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00365,superfamily_L domain-like
SLIT2	9353	genome.wustl.edu	37	4	20591290	20591290	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004787.1	+1	provisional	p.D1038N	1.000	239	0%	329	45.3%	29	31%	benign(0.025)	tolerated(0.11)	neutral(0.273)	HMMSmart_SM00179,superfamily_EGF/Laminin
SLIT2	9353	genome.wustl.edu	37	4	20620395	20620395	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004787.1	+1	provisional	p.I1451	1.000	123	0%	158	43.7%	25	76%	-	-	-	superfamily_EGF/Laminin
GPR125	166647	genome.wustl.edu	37	4	22414962	22414962	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_145290.2	-1	validated	p.R692Q	1.000	150	0%	254	50.4%	28	57.1%	probably_damaging(0.985)	tolerated(0.36)	neutral(0.452)	NULL
PPARGC1A	10891	genome.wustl.edu	37	4	23816020	23816020	+	Silent	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_013261.3	-1	reviewed	p.S362	0.053	150	0%	213	14.1%	0	-	-	-	-	NULL
DHX15	1665	genome.wustl.edu	37	4	24577912	24577912	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001358.2	-1	reviewed	p.Q154R	1.000	232	0%	282	11.7%	137	11.6%	benign(0.274)	deleterious(0.05)	neutral(0.375)	HMMSmart_AAA,HMMSmart_DEXDc,superfamily_SSF52540
LGI2	55203	genome.wustl.edu	37	4	25005844	25005844	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018176.3	-1	validated	p.V289	0.997	63	0%	84	44%	0	-	-	-	-	HMMPfam_EPTP
LGI2	55203	genome.wustl.edu	37	4	25020815	25020815	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000512108	-1	known	p.S144*	1.000	301	0%	415	44.8%	0	-	probably_damaging(0.983)	tolerated(0.1)	deleterious(0.716)	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like
ZCCHC4	29063	genome.wustl.edu	37	4	25363884	25363884	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000505412	+1	known	p.E255*	0.996	364	0%	424	42.7%	4	0%	benign(0.092)	tolerated(0.3)	neutral(0.036)	NULL
RBPJ	3516	genome.wustl.edu	37	4	26432585	26432585	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005349.2	+1	validated	p.N487D	1.000	61	0%	84	46.4%	33	42.4%	unknown(0)	tolerated(0.16)	-	NULL
CCKAR	886	genome.wustl.edu	37	4	26483299	26483299	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000730.2	-1	reviewed	p.F416L	0.241	78	0%	88	47.7%	0	-	benign(0)	tolerated(0.57)	neutral(0.006)	NULL
CCKAR	886	genome.wustl.edu	37	4	26487351	26487351	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000730.2	-1	reviewed	p.I178M	0.932	223	0%	315	47.3%	0	-	possibly_damaging(0.822)	deleterious(0.01)	deleterious(0.717)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
TBC1D19	55296	genome.wustl.edu	37	4	26638844	26638844	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018317.2	+1	validated	p.E102D	1.000	222	0.5%	237	43.9%	0	-	probably_damaging(0.988)	tolerated(0.4)	neutral(0.454)	NULL
STIM2	57620	genome.wustl.edu	37	4	27019558	27019558	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020860.3	+1	reviewed	p.R659Q	1.000	132	0.8%	202	37.1%	53	47.1%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
STIM2	57620	genome.wustl.edu	37	4	27024487	27024487	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020860.3	+1	reviewed	p.D791N	0.997	136	0%	184	40.2%	26	46.1%	benign(0.318)	deleterious(0)	deleterious(0.544)	NULL
PCDH7	5099	genome.wustl.edu	37	4	30921797	30921797	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032457.3	+1	reviewed	p.S1019Y	1.000	94	0%	121	24.8%	5	0%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
KIAA1239	57495	genome.wustl.edu	37	4	37446104	37446104	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001144990.1	+1	validated	p.R832W	1.000	115	0%	134	49.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KIAA1239	57495	genome.wustl.edu	37	4	37447429	37447429	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001144990.1	+1	validated	p.I1273	1.000	102	0%	133	14.3%	0	-	-	-	-	superfamily_WD40_like
TLR10	81793	genome.wustl.edu	37	4	38775323	38775323	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001017388.1	-1	reviewed	p.R630I	0.487	266	0%	348	37.9%	0	-	benign(0.378)	deleterious(0.01)	deleterious(0.526)	superfamily_TIR
TLR10	81793	genome.wustl.edu	37	4	38776180	38776180	+	Silent	SNP	C	C	T	rs11096956	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001017388.1	-1	reviewed	p.P344	0.016	221	0.5%	251	37.1%	0	-	-	-	-	superfamily_SSF52058
FAM114A1	92689	genome.wustl.edu	37	4	38880038	38880038	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_138389.2	+1	validated	p.Q113H	0.959	47	0%	90	15.6%	9	44.4%	probably_damaging(0.981)	deleterious(0.01)	deleterious(0.831)	NULL
WDR19	57728	genome.wustl.edu	37	4	39233800	39233800	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_025132.3	+1	reviewed	p.L721I	1.000	210	0%	263	41.8%	9	55.5%	probably_damaging(0.994)	deleterious(0.04)	deleterious(0.801)	NULL
WDR19	57728	genome.wustl.edu	37	4	39255649	39255649	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_025132.3	+1	reviewed	p.I1000	1.000	173	0%	219	40.6%	3	66.6%	-	-	-	superfamily_TPR-like
RFC1	5981	genome.wustl.edu	37	4	39352997	39352997	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002913.3	-1	reviewed	p.K35Q	0.776	624	0%	675	45.3%	2	0%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
PDS5A	23244	genome.wustl.edu	37	4	39846283	39846283	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001100399.1	-1	reviewed	p.R1181*	1.000	303	0%	424	46.2%	14	14.2%	-	-	-	NULL
N4BP2	55728	genome.wustl.edu	37	4	40103837	40103837	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018177.3	+1	reviewed	p.E124D	0.001	116	0%	134	38.8%	1	0%	possibly_damaging(0.653)	deleterious(0)	deleterious(0.674)	NULL
N4BP2	55728	genome.wustl.edu	37	4	40146336	40146336	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018177.3	+1	reviewed	p.P1687S	1.000	215	0%	284	44.4%	3	33.3%	probably_damaging(0.998)	tolerated(0.05)	deleterious(0.820)	NULL
RBM47	54502	genome.wustl.edu	37	4	40440446	40440446	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001098634.1	-1	validated	p.I155	1.000	12	0%	21	52.4%	53	39.6%	-	-	-	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
NSUN7	79730	genome.wustl.edu	37	4	40778076	40778076	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024677.4	+1	validated	p.R279Q	1.000	243	0%	306	40.8%	1	0%	probably_damaging(0.996)	tolerated(0.13)	deleterious(0.714)	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
NSUN7	79730	genome.wustl.edu	37	4	40810491	40810491	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024677.4	+1	validated	p.M564I	0.721	192	0%	169	40.8%	1	0%	benign(0)	tolerated(0.17)	neutral(0.059)	NULL
APBB2	323	genome.wustl.edu	37	4	40825744	40825744	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_173075.4	-1	reviewed	p.L594I	1.000	84	0%	145	42.8%	26	23%	possibly_damaging(0.906)	tolerated(0.15)	deleterious(0.601)	HMMPfam_PID,HMMSmart_SM00462,superfamily_PH domain-like
LIMCH1	22998	genome.wustl.edu	37	4	41663459	41663459	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000508466	+1	known	p.R470*	0.000	305	0.3%	371	36.4%	13	46.1%	benign(0.001)	tolerated(0.14)	neutral(0.249)	NULL
ATP8A1	10396	genome.wustl.edu	37	4	42487622	42487622	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006095.2	-1	reviewed	p.D739Y	1.000	165	0%	225	40.4%	3	0%	possibly_damaging(0.757)	deleterious(0)	deleterious(0.724)	HMMPfam_Hydrolase,superfamily_HAD-like
ATP8A1	10396	genome.wustl.edu	37	4	42618085	42618085	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006095.2	-1	reviewed	p.K125T	1.000	548	0%	679	45.2%	0	-	possibly_damaging(0.897)	tolerated(0.28)	neutral(0.385)	HMMPfam_E1-E2_ATPase
GRXCR1	389207	genome.wustl.edu	37	4	43022379	43022379	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001080476.1	+1	provisional	p.E212D	1.000	208	0%	274	35.8%	0	-	possibly_damaging(0.646)	tolerated(0.39)	neutral(0.242)	superfamily_Thiordxn-like_fd
GUF1	60558	genome.wustl.edu	37	4	44688678	44688678	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021927.2	+1	validated	p.E296K	1.000	218	0.9%	280	38.9%	3	100%	probably_damaging(0.973)	deleterious(0.01)	deleterious(0.821)	HMMPfam_GTP_EFTU_D2,superfamily_Translat_factor
GABRG1	2565	genome.wustl.edu	37	4	46099315	46099315	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_173536.3	-1	reviewed	p.T52	0.978	432	0.2%	536	42.9%	0	-	-	-	-	NULL
GABRB1	2560	genome.wustl.edu	37	4	47034018	47034018	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000812.3	+1	reviewed	p.F56	1.000	162	0%	195	45.6%	0	-	benign(0.011)	deleterious(0.01)	neutral(0.406)	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD
COMMD8	54951	genome.wustl.edu	37	4	47462214	47462214	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017845.3	-1	provisional	p.D57Y	1.000	212	0%	232	38.4%	2	100%	probably_damaging(0.979)	deleterious(0.05)	deleterious(0.767)	HMMPfam_HCaRG
ATP10D	57205	genome.wustl.edu	37	4	47525216	47525216	+	Missense_Mutation	SNP	C	C	T	rs192815760	by1000genomes	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020453.3	+1	validated	p.R225W	0.945	243	0%	277	40.8%	1	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A
CORIN	10699	genome.wustl.edu	37	4	47628537	47628537	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006587.2	-1	reviewed	p.E734*	1.000	218	0%	329	24.9%	0	-	-	-	-	HMMSmart_SM00202,superfamily_SRCR-like
CORIN	10699	genome.wustl.edu	37	4	47647172	47647172	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006587.2	-1	reviewed	p.K628T	0.959	287	0%	304	45.1%	1	0%	probably_damaging(1)	tolerated(0.12)	deleterious(0.760)	HMMSmart_SM00192,superfamily_LDL receptor-like module
FRYL	285527	genome.wustl.edu	37	4	48611023	48611023	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015030.1	-1	validated	p.G185R	1.000	233	0%	306	42.5%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM repeat
CWH43	80157	genome.wustl.edu	37	4	49005925	49005925	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_025087.2	+1	validated	p.E326*	0.015	167	0%	178	46.6%	0	-	-	-	-	NULL
LRRC66	339977	genome.wustl.edu	37	4	52862253	52862253	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001024611.1	-1	provisional	p.R312H	0.000	84	0%	126	50%	0	-	benign(0)	tolerated(0.4)	neutral(0.016)	NULL
SPATA18	132671	genome.wustl.edu	37	4	52943162	52943162	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_145263.2	+1	provisional	p.D326N	0.999	24	0%	24	33.3%	21	42.8%	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	NULL
SPATA18	132671	genome.wustl.edu	37	4	52951113	52951113	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_145263.2	+1	provisional	p.R504Q	1.000	233	0.4%	268	51.1%	17	52.9%	probably_damaging(0.999)	tolerated(0.08)	deleterious(0.790)	NULL
FIP1L1	81608	genome.wustl.edu	37	4	54257257	54257257	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_030917.3	+1	reviewed	p.R196Q	1.000	167	0%	224	43.8%	4	75%	possibly_damaging(0.939)	deleterious(0.01)	deleterious(0.790)	HMMPfam_Fip1
LNX1	84708	genome.wustl.edu	37	4	54327741	54327741	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001126328.1	-1	reviewed	p.D638Y	1.000	109	0%	182	39.6%	18	27.7%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMPfam_PDZ,superfamily_PDZ domain-like
PDGFRA	5156	genome.wustl.edu	37	4	55156541	55156541	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006206.4	+1	reviewed	p.R981H	0.677	124	0%	184	44%	17	11.7%	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	NULL
KIT	3815	genome.wustl.edu	37	4	55592144	55592144	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000222.2	+1	reviewed	p.E490*	0.942	193	0%	313	41.5%	3	0%	-	-	-	NULL
KDR	3791	genome.wustl.edu	37	4	55955933	55955933	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002253.2	-1	reviewed	p.I1077L	1.000	269	0%	254	48.8%	1	0%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
KDR	3791	genome.wustl.edu	37	4	55968610	55968610	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002253.2	-1	reviewed	p.E685K	0.519	284	0%	358	29.1%	9	0%	possibly_damaging(0.712)	tolerated(0.77)	neutral(0.259)	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726
TMEM165	55858	genome.wustl.edu	37	4	56290758	56290758	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018475.3	+1	validated	p.G282	0.000	248	0%	329	48%	153	45.7%	-	-	-	HMMPfam_UPF0016
PDCL2	132954	genome.wustl.edu	37	4	56435976	56435976	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152401.2	-1	reviewed	p.E91*	1.000	392	0%	446	39.5%	0	-	-	-	-	HMMPfam_Phosducin,superfamily_Thiordxn-like_fd
EXOC1	55763	genome.wustl.edu	37	4	56744100	56744100	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001024924.1	+1	reviewed	p.S364	1.000	203	0%	262	46.2%	11	36.3%	-	-	-	HMMPfam_Sec3
EXOC1	55763	genome.wustl.edu	37	4	56757483	56757483	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001024924.1	+1	reviewed	p.I514	0.999	377	0%	513	43.3%	12	58.3%	-	-	-	HMMPfam_Sec3
CEP135	9662	genome.wustl.edu	37	4	56841103	56841103	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_025009.3	+1	validated	p.E481*	1.000	121	0%	129	31%	1	0%	-	-	-	NULL
CEP135	9662	genome.wustl.edu	37	4	56851518	56851518	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_025009.3	+1	validated	p.N617	1.000	171	0%	235	37.9%	0	-	-	-	-	NULL
ARL9	132946	genome.wustl.edu	37	4	57384859	57384859	+	Missense_Mutation	SNP	C	C	T	rs61732254	byCluster;byFrequency;by1000genomes	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_206919.1	+1	validated	p.P11L	0.994	351	0%	404	44.3%	2	100%	benign(0.177)	deleterious(0.04)	neutral(0.365)	HMMPfam_Arf,superfamily_P-loop containing nucleoside triphosphate hydrolases
LPHN3	23284	genome.wustl.edu	37	4	62800732	62800732	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015236.4	+1	reviewed	p.D695N	1.000	200	0%	204	41.7%	0	-	benign(0.012)	tolerated(0.25)	neutral(0.037)	superfamily_Family A G protein-coupled receptor-like
TECRL	253017	genome.wustl.edu	37	4	65274861	65274861	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001010874.4	-1	validated	p.R70M	0.830	199	0%	246	43.5%	0	-	possibly_damaging(0.509)	tolerated(0.06)	deleterious(0.493)	NULL
CENPC1	1060	genome.wustl.edu	37	4	68385054	68385054	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001812.2	-1	reviewed	p.K166N	0.027	227	0.4%	368	41.8%	1	100%	benign(0.347)	tolerated(0.56)	neutral(0.117)	NULL
STAP1	26228	genome.wustl.edu	37	4	68456610	68456610	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012108.2	+1	reviewed	p.R223I	1.000	129	0%	165	40.6%	0	-	possibly_damaging(0.918)	tolerated(0.44)	neutral(0.381)	HMMSmart_SM00252,superfamily_SH2 domain
UBA6	55236	genome.wustl.edu	37	4	68499130	68499130	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018227.5	-1	validated	p.R692fs	1.000	-	-	-	-	-	-	-	-	-	superfamily_Activating enzymes of the ubiquitin-like proteins
TMPRSS11F	389208	genome.wustl.edu	37	4	68930569	68930569	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_207407.2	-1	validated	p.E283D	0.929	217	0%	323	45.2%	0	-	benign(0.246)	deleterious(0)	deleterious(0.470)	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
TMPRSS11F	389208	genome.wustl.edu	37	4	68956303	68956303	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_207407.2	-1	validated	p.E74*	1.000	176	0%	223	46.6%	0	-	-	-	-	HMMPfam_SEA,HMMSmart_SEA,superfamily_SSF82671
YTHDC1	91746	genome.wustl.edu	37	4	69179917	69179917	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001031732.2	-1	validated	p.R695Q	1.000	204	0%	248	39.9%	95	38.9%	unknown(0)	deleterious(0)	-	NULL
YTHDC1	91746	genome.wustl.edu	37	4	69199099	69199099	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001031732.2	-1	validated	p.E300D	1.000	327	0%	399	40.6%	20	50%	unknown(0)	tolerated(0.38)	-	NULL
UGT2B17	7367	genome.wustl.edu	37	4	69434001	69434001	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001077.3	-1	reviewed	p.K68Q	0.000	198	0%	194	50%	1	0%	benign(0.022)	tolerated(0.35)	neutral(0.022)	HMMPfam_UDPGT,superfamily_SSF53756
UGT2B15	7366	genome.wustl.edu	37	4	69520866	69520866	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001076.2	-1	validated	p.T347N	0.804	311	0%	407	36.6%	0	-	benign(0.003)	tolerated(0.95)	-	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
UGT2B11	10720	genome.wustl.edu	37	4	69870844	69870844	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000381096	-1	known	p.E440D	1.000	188	0%	278	32%	0	-	-	-	-	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
UGT2B11	10720	genome.wustl.edu	37	4	69885730	69885730	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000381096	-1	known	p.N125H	0.000	196	0%	236	45.3%	0	-	-	-	-	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
UGT2B7	7364	genome.wustl.edu	37	4	69973842	69973842	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001074.2	+1	validated	p.F371C	1.000	172	0%	253	43.5%	6	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_UDPGT,PatternScan_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
UGT2B11	10720	genome.wustl.edu	37	4	70080416	70080416	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001073.1	-1	provisional	p.L9I	0.016	340	0%	468	41.7%	0	-	benign(0.047)	tolerated(0.29)	neutral(0.032)	NULL
UGT2B28	54490	genome.wustl.edu	37	4	70146642	70146642	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_053039.1	+1	provisional	p.E142*	0.001	277	0%	412	15.5%	0	-	-	-	-	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
UGT2B28	54490	genome.wustl.edu	37	4	70160253	70160253	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_053039.1	+1	provisional	p.K439T	1.000	146	0%	212	37.7%	0	-	-	-	-	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
UGT2B28	54490	genome.wustl.edu	37	4	70160509	70160509	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_053039.1	+1	provisional	p.K524N	0.988	787	0%	894	43.1%	0	-	benign(0.009)	deleterious(0.05)	neutral(0.346)	HMMPfam_UDPGT
UGT2B28	54490	genome.wustl.edu	37	4	70284671	70284671	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000381079	+1	known	p.P366	0.995	149	0%	220	37.3%	0	-	-	-	-	HMMPfam_UDPGT,PatternScan_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
UGT2B28	54490	genome.wustl.edu	37	4	70288724	70288724	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000381079	+1	known	p.R477Q	0.629	307	0%	495	32.7%	0	-	-	-	-	HMMPfam_UDPGT
UGT2B4	7363	genome.wustl.edu	37	4	70346619	70346619	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021139.2	-1	validated	p.E440D	1.000	191	0%	241	38.2%	0	-	benign(0.001)	deleterious(0.01)	neutral(0.406)	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
UGT2A2	574537	genome.wustl.edu	37	4	70504700	70504700	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001105677.1	-1	inferred	p.K212T	0.991	86	0%	117	41%	0	-	possibly_damaging(0.68)	tolerated(0.12)	deleterious(0.503)	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
MUC7	4589	genome.wustl.edu	37	4	71347468	71347468	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001145006.1	+1	reviewed	p.S336L	0.000	492	0%	634	48.7%	0	-	possibly_damaging(0.873)	tolerated(0.12)	deleterious(0.600)	NULL
ENAM	10117	genome.wustl.edu	37	4	71500177	71500177	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_031889.2	+1	reviewed	p.E121	0.795	273	0%	256	23%	0	-	-	-	-	NULL
ENAM	10117	genome.wustl.edu	37	4	71508120	71508120	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_031889.2	+1	reviewed	p.R326I	0.000	97	0%	123	19.5%	0	-	probably_damaging(0.986)	deleterious(0)	deleterious(0.879)	NULL
RUFY3	22902	genome.wustl.edu	37	4	71659518	71659518	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001037442.2	+1	validated	p.R452*	1.000	37	0%	45	42.2%	1	0%	-	-	-	NULL
SLC4A4	8671	genome.wustl.edu	37	4	72215670	72215670	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001134742.1	+1	reviewed	p.R144I	1.000	206	0%	206	45.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Band_3_cyto,superfamily_PTrfase/Anion_transptr
SLC4A4	8671	genome.wustl.edu	37	4	72425905	72425905	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001134742.1	+1	reviewed	p.K1011N	1.000	176	0%	233	54.1%	0	-	probably_damaging(0.993)	deleterious(0.01)	deleterious(0.856)	NULL
GC	2638	genome.wustl.edu	37	4	72622616	72622616	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000583.2	-1	reviewed	p.V283I	0.211	94	0%	106	49.1%	0	-	benign(0)	tolerated(0.33)	neutral(0.024)	superfamily_Serum albumin-like,HMMPfam_Serum_albumin,HMMSmart_SM00103
ALB	213	genome.wustl.edu	37	4	74281975	74281975	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000511370	+1	known	p.R243*	0.000	276	0%	360	40%	0	-	-	-	-	PatternScan_ALBUMIN,superfamily_Serum albumin-like
AFM	173	genome.wustl.edu	37	4	74357660	74357660	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001133.2	+1	reviewed	p.K305N	0.011	189	0%	259	39.4%	0	-	possibly_damaging(0.908)	tolerated(0.09)	deleterious(0.658)	superfamily_Serum albumin-like,HMMPfam_Serum_albumin,HMMSmart_SM00103
RASSF6	166824	genome.wustl.edu	37	4	74453612	74453612	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_201431.1	-1	validated	p.I141	0.997	234	0%	300	42.7%	0	-	-	-	-	NULL
EREG	2069	genome.wustl.edu	37	4	75250454	75250454	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001432.2	+1	validated	p.R147*	0.224	174	0%	189	45.5%	0	-	-	-	-	NULL
CDKL2	8999	genome.wustl.edu	37	4	76523386	76523386	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003948.3	-1	reviewed	p.E299*	1.000	138	0%	142	42.3%	0	-	-	-	-	superfamily_Protein kinase-like (PK-like)
CDKL2	8999	genome.wustl.edu	37	4	76525530	76525530	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003948.3	-1	reviewed	p.D273E	1.000	297	0.3%	280	42.5%	0	-	benign(0.036)	tolerated(1)	neutral(0.002)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
PPEF2	5470	genome.wustl.edu	37	4	76809434	76809434	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006239.2	-1	reviewed	p.K155	0.600	182	0%	251	42.2%	0	-	-	-	-	HMMSmart_SM00156,HMMPfam_PPP5,superfamily_Metallo-dependent phosphatases
CXCL9	4283	genome.wustl.edu	37	4	76925968	76925968	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002416.1	-1	reviewed	p.E90D	0.996	293	0%	381	43.8%	0	-	unknown(0)	tolerated(0.25)	-	superfamily_Chemokine_IL8
CCDC158	339965	genome.wustl.edu	37	4	77244496	77244496	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001042784.1	-1	validated	p.S1075N	1.000	438	0%	621	45.9%	0	-	benign(0.04)	deleterious(0)	neutral(0.447)	NULL
SHROOM3	57619	genome.wustl.edu	37	4	77660524	77660524	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020859.3	+1	validated	p.R400W	0.612	22	0%	33	39.4%	31	38.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SOWAHB	345079	genome.wustl.edu	37	4	77818892	77818892	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001029870.1	-1	provisional	p.P37	0.441	21	0%	21	38.1%	1	0%	-	-	-	NULL
CXCL13	10563	genome.wustl.edu	37	4	78528977	78528977	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006419.2	+1	validated	p.R62I	0.010	151	0%	179	41.3%	0	-	probably_damaging(0.978)	deleterious(0.05)	deleterious(0.766)	HMMPfam_IL8,HMMSmart_SM00199,superfamily_Interleukin 8-like chemokines,PatternScan_SMALL_CYTOKINES_CXC
MRPL1	65008	genome.wustl.edu	37	4	78804444	78804444	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000502384	+1	known	p.E18*	0.674	171	0%	133	39.1%	1	0%	unknown(0)	tolerated(0.08)	-	NULL
MRPL1	65008	genome.wustl.edu	37	4	78804460	78804460	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020236.3	+1	reviewed	p.E70*	0.991	197	0%	164	42.1%	1	100%	-	-	-	NULL
FRAS1	80144	genome.wustl.edu	37	4	79359747	79359747	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_025074.6	+1	reviewed	p.E1746D	1.000	224	0%	305	13.8%	1	0%	possibly_damaging(0.474)	tolerated(0.45)	neutral(0.169)	NULL
BMP2K	55589	genome.wustl.edu	37	4	79772099	79772099	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_198892.1	+1	reviewed	p.K258E	1.000	146	0%	194	45.4%	5	20%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
PAQR3	152559	genome.wustl.edu	37	4	79847806	79847806	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001040202.1	-1	validated	p.H191N	1.000	146	0%	215	43.3%	8	37.5%	benign(0.218)	tolerated(0.61)	neutral(0.025)	HMMPfam_HlyIII
GK2	2712	genome.wustl.edu	37	4	80328422	80328422	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033214.2	-1	validated	p.E311D	0.996	116	0%	208	47.1%	0	-	benign(0)	tolerated(1)	-	HMMPfam_FGGY_C,superfamily_SSF53067
GK2	2712	genome.wustl.edu	37	4	80329180	80329180	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033214.2	-1	validated	p.E59*	1.000	311	0.3%	384	41.4%	0	-	-	-	-	HMMPfam_FGGY_N,superfamily_SSF53067
ANTXR2	118429	genome.wustl.edu	37	4	80976367	80976367	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001145794.1	-1	reviewed	p.K164N	0.001	232	0%	390	44.1%	5	0%	benign(0.004)	tolerated(0.63)	neutral(0.004)	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
C4orf22	255119	genome.wustl.edu	37	4	81791175	81791175	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152770.1	+1	predicted	p.S121Y	1.000	179	0%	274	43.1%	0	-	possibly_damaging(0.673)	deleterious(0.03)	deleterious(0.603)	NULL
HNRPDL	9987	genome.wustl.edu	37	4	83349583	83349583	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_031372.2	-1	reviewed	p.G154C	1.000	250	0%	251	44.2%	248	48.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
HELQ	113510	genome.wustl.edu	37	4	84348760	84348760	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_133636.2	-1	validated	p.L878M	0.971	159	0%	234	46.6%	3	0%	benign(0)	tolerated(0.69)	neutral(0.002)	NULL
FAM175A	84142	genome.wustl.edu	37	4	84384689	84384689	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_139076.2	-1	validated	p.R252*	0.005	557	0%	616	42.2%	0	-	-	-	-	NULL
WDFY3	23001	genome.wustl.edu	37	4	85707234	85707234	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014991.4	-1	reviewed	p.E1320D	1.000	184	0%	240	43.8%	7	100%	possibly_damaging(0.571)	tolerated(0.33)	neutral(0.220)	NULL
WDFY3	23001	genome.wustl.edu	37	4	85731460	85731460	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014991.4	-1	reviewed	p.R642I	1.000	79	0%	78	48.7%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM repeat
ARHGAP24	83478	genome.wustl.edu	37	4	86921732	86921732	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001025616.2	+1	validated	p.R702*	1.000	187	0%	196	19.9%	0	-	-	-	-	NULL
MAPK10	5602	genome.wustl.edu	37	4	87019707	87019707	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_138982.2	-1	reviewed	p.R258C	1.000	333	0%	486	45.3%	0	-	benign(0.005)	tolerated(0.06)	neutral(0.323)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
PTPN13	5783	genome.wustl.edu	37	4	87728979	87728979	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_080685.2	+1	reviewed	p.R2343*	1.000	154	0%	186	43.5%	3	0%	-	-	-	HMMPfam_Y_phosphatase,HMMSmart_PTPc,superfamily_SSF52799
AFF1	4299	genome.wustl.edu	37	4	87968660	87968660	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005935.2	+1	validated	p.R318*	0.999	26	0%	46	41.3%	4	25%	-	-	-	HMMPfam_AF-4
AFF1	4299	genome.wustl.edu	37	4	88029435	88029435	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005935.2	+1	validated	p.E494*	0.994	134	0%	182	14.3%	3	33.3%	-	-	-	HMMPfam_AF-4
KLHL8	57563	genome.wustl.edu	37	4	88091294	88091294	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020803.3	-1	validated	p.E492*	1.000	156	0%	147	49.7%	10	30%	-	-	-	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
KLHL8	57563	genome.wustl.edu	37	4	88104375	88104375	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020803.3	-1	validated	p.T311S	0.920	270	0%	326	42.6%	11	18.1%	benign(0.066)	tolerated(0.26)	neutral(0.038)	superfamily_Galactose oxidase central domain
DSPP	1834	genome.wustl.edu	37	4	88536764	88536764	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014208.3	+1	reviewed	p.D984N	0.115	330	1.8%	470	48.7%	4	25%	unknown(0)	-	-	NULL
IBSP	3381	genome.wustl.edu	37	4	88723667	88723667	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004967.3	+1	reviewed	p.N21I	1.000	122	0%	146	41.8%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMPfam_BSP_II
PKD2	5311	genome.wustl.edu	37	4	88957423	88957423	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000297.2	+1	reviewed	p.S254*	1.000	157	0%	202	22.3%	3	0%	-	-	-	NULL
ABCG2	9429	genome.wustl.edu	37	4	89039362	89039362	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004827.2	-1	reviewed	p.Y247C	1.000	346	0%	417	42.9%	13	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
ENSG00000199326	0	genome.wustl.edu	37	4	89147961	89147961	+	RNA	SNP	C	C	T	rs149925997	by1000genomes	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000362456	+1	novel	NULL	0.002	46	0%	43	32.6%	0	-	-	-	-	-
HERC5	51191	genome.wustl.edu	37	4	89408283	89408283	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016323.2	+1	reviewed	p.L639M	0.574	255	0%	326	41.1%	0	-	benign(0.238)	deleterious(0.04)	neutral(0.373)	NULL
FAM13A	10144	genome.wustl.edu	37	4	89649790	89649790	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014883.2	-1	validated	p.R989H	1.000	361	0%	487	43.9%	12	58.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FAM13A	10144	genome.wustl.edu	37	4	89670943	89670943	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014883.2	-1	validated	p.F686	0.999	256	0%	300	42.7%	1	100%	-	-	-	NULL
MMRN1	22915	genome.wustl.edu	37	4	90857912	90857912	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007351.2	+1	reviewed	p.G1027	0.771	36	0%	45	37.8%	1	0%	-	-	-	NULL
FAM190A	401145	genome.wustl.edu	37	4	91389414	91389414	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001145065.1	+1	validated	p.V545I	0.988	214	0%	338	29.3%	1	100%	benign(0.32)	tolerated(0.31)	neutral(0.127)	NULL
GRID2	2895	genome.wustl.edu	37	4	94376916	94376916	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001510.2	+1	validated	p.R550Q	1.000	164	0%	240	46.3%	0	-	benign(0.044)	deleterious(0.01)	neutral(0.408)	HMMSmart_PBPe,superfamily_SSF53850
ADH1B	125	genome.wustl.edu	37	4	100232008	100232008	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000668.4	-1	reviewed	p.K339	1.000	362	0.6%	478	50.4%	0	-	-	-	-	superfamily_GroES-like
C4orf17	84103	genome.wustl.edu	37	4	100434256	100434256	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032149.2	+1	validated	p.P6	0.000	112	0%	130	49.2%	0	-	-	-	-	NULL
DAPP1	27071	genome.wustl.edu	37	4	100774380	100774380	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014395.2	+1	validated	p.L122M	1.000	179	0%	229	11.4%	0	-	probably_damaging(0.954)	tolerated(0.15)	deleterious(0.639)	superfamily_SH2 domain
DDIT4L	115265	genome.wustl.edu	37	4	101109313	101109313	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_145244.2	-1	provisional	p.W35R	1.000	57	0%	66	45.5%	0	-	probably_damaging(0.981)	deleterious(0.02)	deleterious(0.808)	NULL
BANK1	55024	genome.wustl.edu	37	4	102751249	102751249	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017935.4	+1	reviewed	p.K119Q	0.112	102	0%	136	46.3%	0	-	benign(0.033)	tolerated(0.67)	neutral(0.004)	NULL
SLC39A8	64116	genome.wustl.edu	37	4	103228762	103228762	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001135146.1	-1	reviewed	p.V128A	1.000	143	0%	174	17.2%	9	11.1%	benign(0.172)	tolerated(0.37)	neutral(0.035)	HMMPfam_Zip
NFKB1	4790	genome.wustl.edu	37	4	103505872	103505872	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003998.3	+1	reviewed	p.D321Y	1.000	166	0%	144	41%	2	0%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	superfamily_ANK,HMMPfam_TIG,HMMSmart_IPT,superfamily_Ig_E-set
SLC9B1	150159	genome.wustl.edu	37	4	103911065	103911065	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_139173.2	-1	reviewed	p.E35*	0.013	599	0%	729	44.9%	0	-	-	-	-	NULL
BDH2	56898	genome.wustl.edu	37	4	104004068	104004068	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020139.3	-1	validated	p.S184Y	1.000	475	0%	492	43.1%	53	52.8%	probably_damaging(1)	tolerated(1)	deleterious(0.500)	superfamily_NAD(P)-binding Rossmann-fold domains
CENPE	1062	genome.wustl.edu	37	4	104035645	104035645	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001813.2	-1	validated	p.L2503I	1.000	737	0%	811	42.4%	1	100%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	NULL
CENPE	1062	genome.wustl.edu	37	4	104061027	104061027	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001813.2	-1	validated	p.R2041	0.485	410	0%	535	23.7%	0	-	-	-	-	NULL
PPA2	27068	genome.wustl.edu	37	4	106345480	106345480	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_176869.2	-1	reviewed	e7-1	1.000	135	0%	155	41.9%	0	-	-	-	-	-
TBCK	93627	genome.wustl.edu	37	4	107157562	107157562	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033115.3	-1	validated	p.F382	1.000	226	0%	275	42.9%	1	0%	-	-	-	superfamily_RabGAP_TBC
SEC24B	10427	genome.wustl.edu	37	4	110442585	110442585	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006323.2	+1	reviewed	p.D771N	1.000	250	0%	266	37.2%	7	71.4%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_Sec23_trunk,superfamily_vWA-like,superfamily_beta-sandwich domain of Sec23/24
EGF	1950	genome.wustl.edu	37	4	110862302	110862302	+	Splice_Site	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001963.4	+1	reviewed	e2+1	1.000	82	0%	121	42.1%	0	-	-	-	-	-
C4orf21	55345	genome.wustl.edu	37	4	113540560	113540560	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000505019	-1	known	p.F213C	0.070	129	0%	161	44.1%	0	-	possibly_damaging(0.894)	tolerated(0.05)	deleterious(0.698)	NULL
ANK2	287	genome.wustl.edu	37	4	114277614	114277614	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001148.4	+1	reviewed	p.E2614*	0.933	216	0.5%	257	46.3%	0	-	-	-	-	NULL
ANK2	287	genome.wustl.edu	37	4	114277837	114277837	+	Missense_Mutation	SNP	G	G	A	rs142107156	by1000genomes	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001148.4	+1	reviewed	p.R2688Q	1.000	100	0%	145	33.8%	0	-	probably_damaging(0.999)	-	-	NULL
ANK2	287	genome.wustl.edu	37	4	114279361	114279361	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001148.4	+1	reviewed	p.S3196L	0.003	64	0%	61	36.1%	1	100%	benign(0.21)	-	-	NULL
UGT8	7368	genome.wustl.edu	37	4	115586850	115586850	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001128174.1	+1	validated	p.K327R	1.000	355	0%	546	42.1%	18	38.8%	probably_damaging(0.965)	tolerated(1)	neutral(0.407)	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
UGT8	7368	genome.wustl.edu	37	4	115597163	115597163	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001128174.1	+1	validated	p.D449Y	1.000	239	0.4%	269	36.1%	31	35.4%	possibly_damaging(0.456)	deleterious(0)	deleterious(0.594)	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
NDST4	64579	genome.wustl.edu	37	4	115769381	115769381	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_022569.1	-1	provisional	p.G644*	1.000	545	0%	706	15.9%	0	-	-	-	-	HMMPfam_Sulfotransfer_1,superfamily_SSF52540
NDST3	9348	genome.wustl.edu	37	4	119145715	119145715	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004784.2	+1	reviewed	p.L537M	1.000	238	0%	295	10.8%	0	-	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	NULL
PRSS12	8492	genome.wustl.edu	37	4	119229694	119229694	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003619.2	-1	reviewed	p.E510*	1.000	436	0.2%	581	42.7%	2	50%	-	-	-	HMMPfam_SRCR,PatternScan_SRCR_1,HMMSmart_SM00202,superfamily_SRCR-like
SEC24D	9871	genome.wustl.edu	37	4	119649723	119649723	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014822.2	-1	reviewed	p.S984*	1.000	490	0%	606	38%	25	52%	-	-	-	superfamily_C-terminal gelsolin-like domain of Sec23/24
SYNPO2	171024	genome.wustl.edu	37	4	119978972	119978972	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000504178	+1	known	p.A1117T	0.990	59	0%	73	53.4%	1	0%	-	-	-	NULL
MAD2L1	4085	genome.wustl.edu	37	4	120987821	120987821	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002358.3	-1	reviewed	p.F23L	1.000	41	0%	30	36.7%	17	35.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HORMA,superfamily_The spindle assembly checkpoint protein mad2
EXOSC9	5393	genome.wustl.edu	37	4	122723077	122723077	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001034194.1	+1	validated	e2+1	1.000	160	0%	195	46.2%	0	-	-	-	-	-
EXOSC9	5393	genome.wustl.edu	37	4	122724099	122724099	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001034194.1	+1	validated	p.R104Q	1.000	284	0%	305	36.1%	17	52.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RNase_PH,superfamily_Ribosomal_S5_D2-typ_fold
TRPC3	7222	genome.wustl.edu	37	4	122825495	122825495	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001130698.1	-1	validated	p.S745	1.000	202	0%	221	14.5%	0	-	-	-	-	NULL
KIAA1109	84162	genome.wustl.edu	37	4	123171613	123171613	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015312.3	+1	reviewed	p.S1936Y	1.000	206	0%	239	15.5%	2	0%	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	NULL
KIAA1109	84162	genome.wustl.edu	37	4	123178643	123178643	+	Silent	SNP	C	C	T	rs79188364		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000419325	+1	known	p.R162*	1.000	190	0%	226	38.5%	12	58.3%	-	-	-	NULL
IL21	59067	genome.wustl.edu	37	4	123536856	123536856	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021803.2	-1	validated	p.R114I	0.003	577	0%	700	44.9%	0	-	possibly_damaging(0.489)	deleterious(0.01)	deleterious(0.568)	NULL
SPRY1	10252	genome.wustl.edu	37	4	124322781	124322781	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005841.1	+1	validated	p.S12L	0.994	174	0%	220	46.4%	21	23.8%	benign(0.04)	deleterious(0)	neutral(0.447)	NULL
FAT4	79633	genome.wustl.edu	37	4	126328246	126328246	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024582.4	+1	validated	p.K1840T	0.845	83	0%	124	49.2%	1	100%	benign(0)	tolerated(0.64)	neutral(0.003)	superfamily_Cadherin-like
FAT4	79633	genome.wustl.edu	37	4	126369689	126369689	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024582.4	+1	validated	p.S2506	0.000	127	0%	173	14.5%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
FAT4	79633	genome.wustl.edu	37	4	126370448	126370448	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024582.4	+1	validated	p.V2759	0.045	60	0%	73	43.8%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
FAT4	79633	genome.wustl.edu	37	4	126370594	126370594	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024582.4	+1	validated	p.R2808I	0.899	125	0%	117	42.7%	0	-	possibly_damaging(0.77)	tolerated(0.38)	neutral(0.303)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
FAT4	79633	genome.wustl.edu	37	4	126412861	126412861	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024582.4	+1	validated	p.E4962*	1.000	108	0%	125	48.8%	3	33.3%	-	-	-	NULL
INTU	27152	genome.wustl.edu	37	4	128608887	128608887	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015693.3	+1	validated	p.F438L	1.000	264	0%	320	41.9%	2	0%	possibly_damaging(0.462)	tolerated(0.45)	neutral(0.164)	NULL
INTU	27152	genome.wustl.edu	37	4	128625422	128625422	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015693.3	+1	validated	p.L515V	0.739	680	0%	661	44%	2	50%	probably_damaging(0.978)	deleterious(0.02)	deleterious(0.803)	NULL
HSPA4L	22824	genome.wustl.edu	37	4	128732660	128732660	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014278.2	+1	provisional	p.R483C	1.000	290	0%	369	39.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HSP70,superfamily_SSF100920
HSPA4L	22824	genome.wustl.edu	37	4	128753852	128753852	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014278.2	+1	provisional	p.F781L	0.996	132	0%	187	35.8%	0	-	benign(0)	tolerated(0.74)	neutral(0.002)	superfamily_SSF100934
HSPA4L	22824	genome.wustl.edu	37	4	128754004	128754004	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014278.2	+1	provisional	p.S832F	0.005	70	0%	142	45.1%	5	80%	benign(0.345)	tolerated(0.08)	neutral(0.409)	NULL
SCLT1	132320	genome.wustl.edu	37	4	129857855	129857855	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_144643.2	-1	validated	p.T595M	0.997	502	0%	624	39.6%	4	100%	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	NULL
SCLT1	132320	genome.wustl.edu	37	4	130003525	130003525	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_144643.2	-1	validated	p.R13Q	1.000	178	0%	241	39%	1	100%	benign(0.001)	tolerated(0.81)	neutral(0.001)	NULL
PCDH18	54510	genome.wustl.edu	37	4	138453049	138453049	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_019035.3	-1	reviewed	p.R65Q	0.980	221	0%	260	44.2%	2	0%	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like
ENSG00000206722	0	genome.wustl.edu	37	4	140177904	140177904	+	RNA	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000383995	-1	novel	NULL	0.032	21	0%	32	46.9%	0	-	-	-	-	-
SCOC	60592	genome.wustl.edu	37	4	141264773	141264773	+	Splice_Site	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032547.2	+1	reviewed	e1-2	0.286	290	0%	368	39.9%	1	100%	-	-	-	-
CLGN	1047	genome.wustl.edu	37	4	141311792	141311792	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001130675.1	-1	reviewed	p.S581*	1.000	566	0%	689	38.6%	3	0%	-	-	-	NULL
INPP4B	8821	genome.wustl.edu	37	4	143033799	143033799	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001101669.1	-1	reviewed	p.R724S	0.001	227	0%	363	44.4%	6	16.6%	benign(0.101)	tolerated(0.97)	neutral(0.007)	NULL
GAB1	2549	genome.wustl.edu	37	4	144359708	144359708	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_207123.2	+1	reviewed	p.R384C	0.995	175	0%	313	45.7%	8	62.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GAB1	2549	genome.wustl.edu	37	4	144381519	144381519	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_207123.2	+1	reviewed	p.S591Y	1.000	116	0%	156	51.3%	3	66.6%	possibly_damaging(0.712)	tolerated(1)	neutral(0.258)	NULL
SMARCA5	8467	genome.wustl.edu	37	4	144449113	144449113	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003601.2	+1	reviewed	p.K298N	1.000	199	0%	263	40.7%	4	50%	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	HMMPfam_SNF2_N,HMMSmart_DEXDc,superfamily_SSF52540
FREM3	166752	genome.wustl.edu	37	4	144620286	144620286	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000329798	-1	known	p.D515Y	1.000	92	0%	126	47.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FREM3	166752	genome.wustl.edu	37	4	144620823	144620823	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000329798	-1	known	p.E336K	0.999	21	0%	27	40.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GYPE	2996	genome.wustl.edu	37	4	144826644	144826644	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002102.3	-1	reviewed	p.I6T	0.000	381	0.3%	497	27%	0	-	benign(0.037)	deleterious(0)	neutral(0.447)	NULL
GYPB	2994	genome.wustl.edu	37	4	144921578	144921578	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000283128	-1	known	p.E63*	0.004	68	0%	48	47.9%	0	-	-	-	-	HMMPfam_Glycophorin_A
HHIP	64399	genome.wustl.edu	37	4	145567881	145567881	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_022475.1	+1	reviewed	p.F18L	1.000	90	0%	114	17.5%	5	0%	benign(0.138)	tolerated(0.32)	neutral(0.036)	HMMPfam_Folate_rec
ANAPC10	10393	genome.wustl.edu	37	4	146017264	146017264	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014885.3	-1	validated	e1-1	0.221	186	0%	251	52.2%	0	-	-	-	-	-
ABCE1	6059	genome.wustl.edu	37	4	146025661	146025661	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001040876.1	+1	reviewed	p.R33*	1.000	169	0%	240	40.4%	30	43.3%	-	-	-	HMMPfam_RLI,superfamily_4Fe-4S ferredoxins
OTUD4	54726	genome.wustl.edu	37	4	146062584	146062584	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001102653.1	-1	reviewed	p.R612Q	1.000	201	0%	249	37.3%	17	17.6%	possibly_damaging(0.674)	deleterious(0.01)	deleterious(0.645)	NULL
C4orf51	646603	genome.wustl.edu	37	4	146651091	146651091	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001080531.1	+1	inferred	p.R159*	0.000	179	0%	232	23.3%	0	-	-	-	-	NULL
EDNRA	1909	genome.wustl.edu	37	4	148461553	148461553	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001957.3	+1	reviewed	p.I353	1.000	272	0%	314	37.6%	2	0%	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
PRMT10	90826	genome.wustl.edu	37	4	148594151	148594151	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_138364.2	-1	provisional	p.T234	1.000	178	0%	281	42.3%	7	42.8%	-	-	-	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
PRMT10	90826	genome.wustl.edu	37	4	148601559	148601559	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_138364.2	-1	provisional	p.D85Y	1.000	135	0%	163	47.9%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_TPR-like
ARHGAP10	79658	genome.wustl.edu	37	4	148796254	148796254	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024605.3	+1	validated	p.R262L	1.000	196	0%	213	39.9%	5	60%	probably_damaging(0.991)	tolerated(0.32)	neutral(0.468)	NULL
MAB21L2	10586	genome.wustl.edu	37	4	151504358	151504358	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006439.4	+1	reviewed	p.I59	1.000	35	0%	50	36%	0	-	-	-	-	HMMPfam_Mab-21
MAB21L2	10586	genome.wustl.edu	37	4	151504523	151504523	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006439.4	+1	reviewed	p.V114	1.000	41	0%	69	36.2%	0	-	-	-	-	HMMPfam_Mab-21
LRBA	987	genome.wustl.edu	37	4	151935596	151935596	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006726.2	-1	validated	p.E67*	1.000	93	0%	93	44.1%	0	-	-	-	-	NULL
PET112	5188	genome.wustl.edu	37	4	152629244	152629244	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004564.2	-1	validated	p.L258S	1.000	94	0%	129	51.9%	18	38.8%	-	-	-	HMMPfam_GatB_N
FBXW7	55294	genome.wustl.edu	37	4	153268097	153268097	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033632.2	-1	reviewed	p.W237*	1.000	353	0%	450	43.3%	2	0%	-	-	-	superfamily_WD40 repeat-like
FBXW7	55294	genome.wustl.edu	37	4	153332524	153332524	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033632.2	-1	reviewed	p.T144	0.997	260	0.4%	303	40.9%	8	75%	-	-	-	superfamily_WD40 repeat-like
MND1	84057	genome.wustl.edu	37	4	154315478	154315478	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032117.2	+1	validated	p.R114Q	0.987	339	0%	392	41.1%	9	44.4%	probably_damaging(0.996)	tolerated(0.06)	deleterious(0.784)	HMMPfam_Mnd1
MND1	84057	genome.wustl.edu	37	4	154335942	154335942	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032117.2	+1	validated	p.F184Y	1.000	95	0%	151	47.7%	0	-	benign(0.016)	deleterious(0)	neutral(0.445)	HMMPfam_Mnd1
KIAA0922	23240	genome.wustl.edu	37	4	154506010	154506010	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015196.3	+1	validated	p.I361L	0.001	200	0%	280	12.1%	2	0%	benign(0.023)	tolerated(0.25)	neutral(0.038)	NULL
TLR2	7097	genome.wustl.edu	37	4	154626240	154626240	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003264.3	+1	reviewed	p.E727D	1.000	190	0%	204	47.5%	2	50%	probably_damaging(0.995)	deleterious(0.02)	deleterious(0.841)	HMMPfam_TIR,HMMSmart_TIR,superfamily_TIR
PLRG1	5356	genome.wustl.edu	37	4	155468997	155468997	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002669.2	-1	provisional	p.R42L	0.866	172	0%	235	43.8%	54	50%	benign(0)	tolerated(1)	-	NULL
FGB	2244	genome.wustl.edu	37	4	155490734	155490734	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005141.4	+1	reviewed	p.E343*	1.000	162	0%	181	11.6%	0	-	-	-	-	HMMPfam_Fibrinogen_C,HMMSmart_SM00186,superfamily_Fibrinogen C-terminal domain-like
FGA	2243	genome.wustl.edu	37	4	155507996	155507996	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000508.3	-1	reviewed	p.K195N	0.910	172	0%	280	29.3%	0	-	probably_damaging(0.979)	deleterious(0.01)	deleterious(0.828)	HMMPfam_Fib_alpha
FGG	2266	genome.wustl.edu	37	4	155528033	155528033	+	Missense_Mutation	SNP	C	C	T	rs121913089		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021870.2	-1	reviewed	p.G318D	1.000	204	0%	300	42.7%	0	-	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	HMMPfam_Fibrinogen_C,HMMSmart_SM00186,superfamily_Fibrinogen C-terminal domain-like
RBM46	166863	genome.wustl.edu	37	4	155717921	155717921	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_144979.3	+1	validated	p.I6T	0.235	97	0%	146	50.7%	0	-	benign(0)	tolerated(1)	-	NULL
MAP9	79884	genome.wustl.edu	37	4	156269057	156269057	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001039580.1	-1	validated	p.E608*	1.000	216	0.5%	260	38.1%	2	0%	-	-	-	NULL
MAP9	79884	genome.wustl.edu	37	4	156281416	156281416	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001039580.1	-1	validated	p.K318N	0.003	243	0%	376	47.9%	3	33.3%	probably_damaging(0.998)	tolerated(0.17)	deleterious(0.533)	NULL
MAP9	79884	genome.wustl.edu	37	4	156294312	156294312	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001039580.1	-1	validated	p.L153I	0.059	69	0%	90	13.3%	1	100%	benign(0)	tolerated(0.19)	neutral(0.050)	NULL
GUCY1B3	2983	genome.wustl.edu	37	4	156698690	156698690	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000857.2	+1	validated	p.E65*	1.000	384	0%	492	17.3%	4	0%	-	-	-	HMMPfam_HNOB,superfamily_H-NOX domain
FAM198B	51313	genome.wustl.edu	37	4	159076935	159076935	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001128424.1	-1	validated	p.S318Y	0.065	110	0%	180	42.2%	11	0%	benign(0.052)	tolerated(1)	neutral(0.003)	NULL
FNIP2	57600	genome.wustl.edu	37	4	159747080	159747080	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020840.1	+1	validated	p.S40	0.056	325	0%	416	12.7%	5	20%	-	-	-	NULL
FNIP2	57600	genome.wustl.edu	37	4	159789744	159789744	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020840.1	+1	validated	p.E652D	0.000	81	0%	87	46%	0	-	benign(0.083)	tolerated(0.41)	neutral(0.021)	NULL
C4orf45	152940	genome.wustl.edu	37	4	159836343	159836343	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152543.2	-1	validated	p.P175	0.000	332	0%	445	43.4%	0	-	-	-	-	NULL
RAPGEF2	9693	genome.wustl.edu	37	4	160253611	160253611	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014247.2	+1	validated	p.E472*	1.000	102	0%	89	44.9%	2	0%	-	-	-	superfamily_PDZ,superfamily_Ras_GEF
FSTL5	56884	genome.wustl.edu	37	4	162459388	162459388	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020116.3	-1	validated	p.I414	0.539	279	0%	389	46.5%	0	-	-	-	-	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726
NAF1	92345	genome.wustl.edu	37	4	164050142	164050142	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_138386.2	-1	validated	p.L464	0.000	21	0%	29	24.1%	3	66.6%	-	-	-	NULL
NPY1R	4886	genome.wustl.edu	37	4	164246499	164246499	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000909.4	-1	validated	p.A371T	0.007	218	0.5%	269	42.8%	0	-	benign(0)	deleterious(0.03)	neutral(0.364)	NULL
TKTL2	84076	genome.wustl.edu	37	4	164394337	164394337	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032136.4	-1	validated	p.D184N	0.980	62	0%	67	37.3%	0	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_Transketolase_N,superfamily_SSF52518
TRIM60	166655	genome.wustl.edu	37	4	165961487	165961487	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152620.2	+1	reviewed	p.R88I	0.135	175	0%	209	46.4%	0	-	probably_damaging(0.993)	deleterious(0.01)	deleterious(0.856)	superfamily_SSF57850
TRIM75	391714	genome.wustl.edu	37	4	165980593	165980593	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000322402	+1	known	p.E98D	0.358	55	0%	82	37.8%	0	-	-	-	-	HMMPfam_zf-B_box,HMMSmart_BBOX,superfamily_SSF57850
TRIM75	391714	genome.wustl.edu	37	4	165980727	165980727	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000322402	+1	known	p.R143I	0.000	86	0%	124	37.9%	0	-	-	-	-	NULL
TLL1	7092	genome.wustl.edu	37	4	166976235	166976235	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012464.3	+1	reviewed	p.R511I	1.000	190	0%	252	42.1%	0	-	possibly_damaging(0.594)	tolerated(0.07)	deleterious(0.524)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
DDX60	55601	genome.wustl.edu	37	4	169190102	169190102	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017631.5	-1	validated	p.E897*	1.000	117	0%	178	43.3%	1	0%	-	-	-	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
DDX60	55601	genome.wustl.edu	37	4	169197182	169197182	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017631.5	-1	validated	p.S710Y	0.965	224	0%	276	15.6%	1	0%	possibly_damaging(0.903)	tolerated(0.16)	neutral(0.417)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DDX60L	91351	genome.wustl.edu	37	4	169337909	169337909	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001012967.1	-1	validated	p.E884K	1.000	229	0%	255	45.1%	1	100%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
PALLD	23022	genome.wustl.edu	37	4	169842851	169842851	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016081.3	+1	reviewed	p.R989Q	1.000	58	0%	94	51.1%	225	29.7%	possibly_damaging(0.927)	deleterious(0.01)	deleterious(0.780)	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726
PALLD	23022	genome.wustl.edu	37	4	169846183	169846183	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000503290	+1	known	p.E141*	1.000	201	0%	242	45.5%	231	31.1%	probably_damaging(1)	tolerated(0.14)	deleterious(0.750)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
AADAT	51166	genome.wustl.edu	37	4	171010819	171010819	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016228.3	-1	reviewed	p.T8M	0.931	156	0%	213	46%	16	43.7%	probably_damaging(0.995)	deleterious(0.02)	deleterious(0.841)	superfamily_PLP-dependent transferases
GALNTL6	442117	genome.wustl.edu	37	4	173269816	173269816	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001034845.2	+1	validated	p.L177I	1.000	161	0%	265	19.6%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_Glycos_transf_2,superfamily_Nucleotide-diphospho-sugar transferases
GALNT7	51809	genome.wustl.edu	37	4	174213297	174213297	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000505308	+1	known	p.R6*	1.000	169	0%	203	46.8%	62	43.5%	benign(0.039)	tolerated(0.14)	neutral(0.252)	superfamily_Nucleotide-diphospho-sugar transferases
SAP30	8819	genome.wustl.edu	37	4	174294638	174294638	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003864.3	+1	reviewed	p.S138*	1.000	265	0.4%	399	45.6%	10	10%	-	-	-	NULL
FBXO8	26269	genome.wustl.edu	37	4	175160315	175160315	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012180.2	-1	reviewed	p.T201K	1.000	142	0%	151	37.7%	4	75%	benign(0)	tolerated(0.12)	neutral(0.261)	HMMPfam_Sec7,HMMSmart_SM00222,superfamily_Sec7 domain
ADAM29	11086	genome.wustl.edu	37	4	175897708	175897708	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001130703.1	+1	reviewed	p.E344	0.000	129	0%	183	47.5%	0	-	-	-	-	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"
WDR17	116966	genome.wustl.edu	37	4	177093634	177093634	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_170710.4	+1	reviewed	p.K1110Q	1.000	158	0%	225	44.9%	0	-	possibly_damaging(0.578)	tolerated(0.28)	neutral(0.230)	NULL
ODZ3	55714	genome.wustl.edu	37	4	183721204	183721204	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001080477.1	+1	provisional	p.F2600	0.998	5	0.000	14	0.500	6	0%	-	-	-	NULL
WWC2	80014	genome.wustl.edu	37	4	184130106	184130106	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024949.5	+1	validated	p.F150L	1.000	142	0%	152	43.4%	5	60%	benign(0.035)	tolerated(0.68)	neutral(0.004)	NULL
CDKN2AIP	55602	genome.wustl.edu	37	4	184366689	184366689	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017632.2	+1	provisional	p.Y92H	1.000	117	0%	122	23%	11	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
STOX2	56977	genome.wustl.edu	37	4	184930964	184930964	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020225.1	+1	provisional	p.E325K	1.000	38	0%	41	31.7%	1	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
HELT	391723	genome.wustl.edu	37	4	185941891	185941891	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001029887.1	+1	provisional	p.N317H	0.941	34	0%	46	45.7%	0	-	benign(0.156)	deleterious(0.02)	neutral(0.397)	NULL
KIAA1430	57587	genome.wustl.edu	37	4	186111664	186111664	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020827.1	-1	validated	p.S229	0.000	358	0.6%	471	11.5%	11	9%	-	-	-	NULL
KIAA1430	57587	genome.wustl.edu	37	4	186111752	186111752	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020827.1	-1	validated	p.S200L	0.123	298	0%	361	40.4%	10	40%	possibly_damaging(0.67)	tolerated(0.17)	neutral(0.296)	NULL
SNX25	83891	genome.wustl.edu	37	4	186180101	186180101	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_031953.2	+1	validated	p.E41A	1.000	189	0%	250	46.4%	1	100%	possibly_damaging(0.908)	tolerated(0.94)	neutral(0.361)	HMMPfam_PXA
SNX25	83891	genome.wustl.edu	37	4	186253882	186253882	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_031953.2	+1	validated	p.S464Y	1.000	137	0%	192	31.2%	4	50%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
LRP2BP	55805	genome.wustl.edu	37	4	186294107	186294107	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018409.3	-1	validated	p.E236*	0.831	99	0%	166	41.6%	9	33.3%	-	-	-	HMMPfam_Sel1,HMMSmart_SM00671,superfamily_HCP-like
UFSP2	55325	genome.wustl.edu	37	4	186339610	186339610	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018359.3	-1	validated	p.K106N	1.000	389	0%	450	44.7%	23	65.2%	possibly_damaging(0.948)	tolerated(0.39)	neutral(0.407)	NULL
SORBS2	8470	genome.wustl.edu	37	4	186544548	186544548	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021069.4	-1	reviewed	p.E675K	1.000	328	0.3%	436	44%	1	0%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	PatternScan_ZINC_FINGER_C2H2_1
FAT1	2195	genome.wustl.edu	37	4	187538991	187538991	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005245.3	-1	reviewed	p.R2917*	0.975	155	0%	278	38.8%	23	0%	-	-	-	superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
FAT1	2195	genome.wustl.edu	37	4	187542544	187542544	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005245.3	-1	reviewed	p.I1732M	0.001	147	0%	164	47%	4	50%	benign(0)	tolerated(0.21)	neutral(0.044)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
FAT1	2195	genome.wustl.edu	37	4	187549315	187549315	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005245.3	-1	reviewed	p.I1601	0.082	62	0%	68	47.1%	3	66.6%	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
FAT1	2195	genome.wustl.edu	37	4	187630313	187630313	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005245.3	-1	reviewed	p.L223	0.045	95	0%	121	43%	12	0%	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
ZFP42	132625	genome.wustl.edu	37	4	188924165	188924165	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_174900.3	+1	validated	p.F68L	0.001	140	0%	173	37%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
ZFP42	132625	genome.wustl.edu	37	4	188924786	188924786	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_174900.3	+1	validated	p.F275	0.077	56	0%	71	47.9%	0	-	-	-	-	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
TRIML1	339976	genome.wustl.edu	37	4	189061727	189061727	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_178556.3	+1	provisional	p.E152*	1.000	394	0%	487	23.4%	0	-	-	-	-	NULL
SLC9A3	6550	genome.wustl.edu	37	5	476780	476780	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004174.2	-1	validated	p.N590Y	0.954	14	0%	30	56.7%	1	100%	benign(0.156)	deleterious(0.02)	neutral(0.397)	NULL
TERT	7015	genome.wustl.edu	37	5	1260645	1260645	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_198253.2	-1	reviewed	p.R972C	0.004	105	0%	93	39.8%	0	-	probably_damaging(1)	tolerated(0.23)	deleterious(0.541)	NULL
IRX4	50805	genome.wustl.edu	37	5	1878854	1878854	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016358.2	-1	validated	p.F263	0.946	17	0%	22	54.5%	0	-	-	-	-	NULL
C5orf38	153571	genome.wustl.edu	37	5	2755159	2755159	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000397835	+1	known	p.R117Q	0.000	113	0%	194	22.7%	0	-	unknown(0)	-	-	NULL
IRX1	79192	genome.wustl.edu	37	5	3599732	3599732	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024337.3	+1	validated	p.D224N	1.000	48	0%	56	64.3%	22	45.4%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
KIAA0947	23379	genome.wustl.edu	37	5	5461439	5461439	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015325.1	+1	validated	p.F664L	0.001	101	0%	127	47.2%	5	60%	benign(0.035)	tolerated(0.52)	neutral(0.011)	NULL
PAPD7	11044	genome.wustl.edu	37	5	6737711	6737711	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006999.4	+1	reviewed	p.E19K	1.000	361	0%	437	45.1%	10	70%	benign(0.13)	tolerated(0.18)	neutral(0.067)	HMMPfam_NTP_transf_2,superfamily_Nucleotidyltransferase
ADCY2	108	genome.wustl.edu	37	5	7695883	7695883	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020546.2	+1	reviewed	p.I296	0.026	289	0.7%	401	46.1%	0	-	-	-	-	HMMPfam_Guanylate_cyc,HMMSmart_CYCc,superfamily_A/G_cyclase
ADCY2	108	genome.wustl.edu	37	5	7698369	7698369	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020546.2	+1	reviewed	p.C331G	1.000	221	0%	257	47.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Guanylate_cyc,HMMSmart_CYCc,superfamily_A/G_cyclase
MTRR	4552	genome.wustl.edu	37	5	7895928	7895928	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024010.2	+1	reviewed	p.T574P	0.863	199	0%	242	39.3%	12	33.3%	probably_damaging(0.973)	deleterious(0.01)	deleterious(0.821)	HMMPfam_NAD_binding_1,superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain
SEMA5A	9037	genome.wustl.edu	37	5	9122853	9122853	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003966.2	-1	reviewed	p.R566*	0.995	23	0%	25	36%	5	0%	-	-	-	HMMSmart_TSP1,superfamily_TSP1
SEMA5A	9037	genome.wustl.edu	37	5	9379964	9379964	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003966.2	-1	reviewed	p.R32I	0.959	131	0%	178	48.9%	1	0%	possibly_damaging(0.925)	deleterious(0.02)	deleterious(0.756)	superfamily_Sema
MARCH6	10299	genome.wustl.edu	37	5	10402236	10402236	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005885.2	+1	provisional	p.T346	0.414	366	0%	473	13.7%	37	16.2%	-	-	-	NULL
MARCH6	10299	genome.wustl.edu	37	5	10410378	10410378	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005885.2	+1	provisional	p.G561R	1.000	83	0%	130	42.3%	65	52.3%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
DNAH5	1767	genome.wustl.edu	37	5	13717498	13717498	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001369.2	-1	reviewed	p.E4211*	1.000	60	0%	79	39.2%	1	100%	-	-	-	HMMPfam_Dynein_heavy
DNAH5	1767	genome.wustl.edu	37	5	13829814	13829814	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001369.2	-1	reviewed	e38-1	1.000	67	0%	126	37.3%	0	-	-	-	-	-
ANKH	56172	genome.wustl.edu	37	5	14745985	14745985	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_054027.4	-1	reviewed	p.F303	0.999	72	0%	104	41.3%	89	37%	-	-	-	HMMPfam_ANKH
FAM134B	54463	genome.wustl.edu	37	5	16479066	16479066	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001034850.1	-1	reviewed	p.K234T	0.942	138	0%	194	52.1%	2	100%	benign(0.334)	tolerated(0.31)	neutral(0.132)	NULL
CDH18	1016	genome.wustl.edu	37	5	19473568	19473568	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004934.3	-1	reviewed	p.E714K	1.000	401	0%	493	41.4%	0	-	possibly_damaging(0.49)	tolerated(0.2)	neutral(0.212)	HMMPfam_Cadherin_C
CDH12	1010	genome.wustl.edu	37	5	21752211	21752211	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004061.3	-1	reviewed	p.D674N	1.000	301	0%	367	41.1%	1	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Cadherin_C
PRDM9	56979	genome.wustl.edu	37	5	23522457	23522457	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020227.2	+1	provisional	p.E185*	0.319	222	0%	261	41%	0	-	-	-	-	HMMPfam_SSXRD
PRDM9	56979	genome.wustl.edu	37	5	23526445	23526445	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020227.2	+1	provisional	p.F416L	0.001	334	0.3%	378	39.2%	0	-	possibly_damaging(0.662)	tolerated(0.45)	neutral(0.246)	NULL
PRDM9	56979	genome.wustl.edu	37	5	23527432	23527432	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020227.2	+1	provisional	p.E745D	1.000	177	0%	193	37.8%	0	-	possibly_damaging(0.547)	deleterious(0.01)	deleterious(0.591)	superfamily_SSF57667
CDH10	1008	genome.wustl.edu	37	5	24505263	24505263	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006727.2	-1	reviewed	p.L451I	0.983	174	0%	245	44.1%	0	-	benign(0)	tolerated(0.2)	neutral(0.049)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
CDH10	1008	genome.wustl.edu	37	5	24537734	24537734	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006727.2	-1	reviewed	p.S94Y	1.000	234	0%	255	49%	0	-	possibly_damaging(0.901)	deleterious(0)	deleterious(0.801)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
CDH9	1007	genome.wustl.edu	37	5	26881360	26881360	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016279.3	-1	reviewed	p.S752Y	1.000	160	0%	207	44.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin_C
CDH9	1007	genome.wustl.edu	37	5	26881462	26881462	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016279.3	-1	reviewed	p.R718Q	1.000	311	0%	438	18.3%	0	-	benign(0)	tolerated(0.67)	neutral(0.003)	HMMPfam_Cadherin_C
CDH9	1007	genome.wustl.edu	37	5	26906108	26906108	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016279.3	-1	reviewed	p.T257	0.179	383	0%	450	41.3%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
LOC729862	729862	genome.wustl.edu	37	5	28927181	28927181	+	RNA	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XR_040872.2	+1	model	NULL	0.999	233	0%	340	43.5%	0	-	-	-	-	-
C5orf22	55322	genome.wustl.edu	37	5	31538508	31538508	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018356.2	+1	validated	p.A173	0.004	117	0%	137	49.6%	6	16.6%	-	-	-	NULL
C5orf22	55322	genome.wustl.edu	37	5	31552951	31552951	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018356.2	+1	validated	p.R424H	0.000	189	0%	282	43.6%	15	13.3%	benign(0.001)	tolerated(0.2)	neutral(0.049)	NULL
PDZD2	23037	genome.wustl.edu	37	5	31995715	31995715	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_178140.2	+1	reviewed	p.L338F	1.000	285	0%	338	47.6%	0	-	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	HMMPfam_PDZ,superfamily_PDZ domain-like
PDZD2	23037	genome.wustl.edu	37	5	32052805	32052805	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_178140.2	+1	reviewed	p.S585L	1.000	156	0%	224	39.3%	0	-	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	superfamily_PDZ domain-like
ADAMTS12	81792	genome.wustl.edu	37	5	33596159	33596159	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_030955.2	-1	reviewed	p.R845H	1.000	142	0%	200	49%	4	0%	probably_damaging(0.994)	deleterious(0.02)	deleterious(0.835)	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
ADAMTS12	81792	genome.wustl.edu	37	5	33683135	33683135	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_030955.2	-1	reviewed	p.L301	0.991	137	0%	105	38.1%	0	-	-	-	-	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"
RXFP3	51289	genome.wustl.edu	37	5	33937697	33937697	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016568.3	+1	validated	p.I284	0.999	27	0%	35	51.4%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
AMACR	23600	genome.wustl.edu	37	5	33998884	33998884	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_203382.2	-1	reviewed	p.I147T	0.000	177	0%	249	22.5%	10	40%	benign(0.036)	deleterious(0)	neutral(0.447)	NULL
AMACR	23600	genome.wustl.edu	37	5	34005973	34005973	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014324.5	-1	reviewed	p.E93D	0.725	92	0%	129	48.1%	5	60%	benign(0.084)	tolerated(0.34)	neutral(0.029)	HMMPfam_CoA_transf_3,superfamily_CoA-transferase family III (CaiB/BaiF)
RAI14	26064	genome.wustl.edu	37	5	34757620	34757620	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001145525.1	+1	validated	p.E31D	1.000	106	0%	115	40.9%	90	36.6%	benign(0.002)	deleterious(0.05)	neutral(0.345)	HMMPfam_Ank,superfamily_ANK
RAI14	26064	genome.wustl.edu	37	5	34823927	34823927	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001145525.1	+1	validated	p.E663	1.000	94	0%	123	45.5%	30	26.6%	-	-	-	NULL
DNAJC21	134218	genome.wustl.edu	37	5	34939102	34939102	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_194283.3	+1	validated	p.D295Y	0.014	151	0%	202	26.7%	42	38%	possibly_damaging(0.539)	deleterious(0.03)	deleterious(0.547)	NULL
DNAJC21	134218	genome.wustl.edu	37	5	34945048	34945048	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_194283.3	+1	validated	p.E354*	1.000	145	0%	218	35.8%	5	20%	-	-	-	NULL
AGXT2	64902	genome.wustl.edu	37	5	35037140	35037140	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_031900.3	-1	reviewed	p.L131	0.002	90	0%	124	47.6%	0	-	-	-	-	HMMPfam_Aminotran_3,superfamily_PyrdxlP-dep_Trfase_major
PRLR	5618	genome.wustl.edu	37	5	35065569	35065569	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000949.4	-1	validated	p.E497D	0.023	121	0%	193	46.6%	0	-	benign(0.016)	tolerated(0.5)	neutral(0.011)	NULL
PRLR	5618	genome.wustl.edu	37	5	35065792	35065792	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000949.4	-1	validated	p.Q423P	0.011	204	0%	260	45%	0	-	possibly_damaging(0.444)	tolerated(0.2)	neutral(0.194)	NULL
IL7R	3575	genome.wustl.edu	37	5	35867461	35867461	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002185.2	+1	reviewed	p.Y92C	0.871	201	0%	258	51.6%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
IL7R	3575	genome.wustl.edu	37	5	35867483	35867483	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002185.2	+1	reviewed	p.F99L	0.916	223	0%	270	36.7%	0	-	probably_damaging(0.973)	tolerated(0.1)	deleterious(0.702)	NULL
IL7R	3575	genome.wustl.edu	37	5	35871249	35871249	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002185.2	+1	reviewed	p.K157N	0.862	150	0%	182	40.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_fn3,superfamily_Fibronectin type III
IL7R	3575	genome.wustl.edu	37	5	35876393	35876393	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002185.2	+1	reviewed	p.K395N	0.001	143	0%	180	56.7%	0	-	benign(0.076)	deleterious(0.05)	neutral(0.351)	NULL
UGT3A2	167127	genome.wustl.edu	37	5	36051988	36051988	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_174914.3	-1	validated	p.E99*	0.016	138	0%	178	43.8%	0	-	-	-	-	HMMPfam_UDPGT,superfamily_SSF53756
RANBP3L	202151	genome.wustl.edu	37	5	36257579	36257579	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_145000.3	-1	validated	p.F250C	0.154	439	0%	488	45.1%	0	-	probably_damaging(0.987)	tolerated(0.14)	deleterious(0.686)	NULL
SLC1A3	6507	genome.wustl.edu	37	5	36686290	36686290	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004172.4	+1	reviewed	p.E516D	1.000	122	0%	131	48.1%	0	-	probably_damaging(1)	tolerated(0.51)	deleterious(0.509)	NULL
NIPBL	25836	genome.wustl.edu	37	5	37026330	37026330	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_133433.3	+1	reviewed	e30-1	1.000	121	0%	154	38.3%	0	-	-	-	-	-
C5orf42	65250	genome.wustl.edu	37	5	37107881	37107881	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_023073.3	-1	predicted	e34-1	0.998	25	0%	44	43.2%	1	0%	-	-	-	-
C5orf42	65250	genome.wustl.edu	37	5	37244664	37244664	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000508244	-1	known	p.R128I	1.000	149	0%	183	10.4%	0	-	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	NULL
WDR70	55100	genome.wustl.edu	37	5	37605190	37605190	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018034.2	+1	provisional	p.E314D	1.000	163	0%	174	41.4%	38	47.3%	benign(0)	tolerated(0.62)	neutral(0.004)	superfamily_WD40_like
LIFR	3977	genome.wustl.edu	37	5	38489264	38489264	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001127671.1	-1	reviewed	p.E751K	1.000	251	0%	270	40.4%	0	-	possibly_damaging(0.68)	tolerated(0.57)	neutral(0.248)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
RICTOR	253260	genome.wustl.edu	37	5	38947466	38947466	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152756.3	-1	validated	p.R1405Q	1.000	154	0%	188	38.8%	10	20%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_ARM repeat
FYB	2533	genome.wustl.edu	37	5	39119000	39119000	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001465.3	-1	validated	p.L793I	1.000	486	0%	650	41.8%	2	0%	possibly_damaging(0.638)	tolerated(0.32)	neutral(0.247)	superfamily_SH3-domain,HMMPfam_SH3_2
FYB	2533	genome.wustl.edu	37	5	39202696	39202696	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001465.3	-1	validated	p.E123*	1.000	260	0.4%	349	47.6%	0	-	-	-	-	NULL
C9	735	genome.wustl.edu	37	5	39311424	39311424	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001737.3	-1	reviewed	p.R309I	1.000	288	0%	355	45.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MACPF,HMMSmart_MACPF
C9	735	genome.wustl.edu	37	5	39316047	39316047	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001737.3	-1	reviewed	p.N234H	0.001	249	0%	334	45.5%	0	-	benign(0.011)	tolerated(0.12)	neutral(0.261)	NULL
C9	735	genome.wustl.edu	37	5	39341357	39341357	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001737.3	-1	reviewed	p.N123D	1.000	89	0%	160	51.2%	0	-	benign(0.392)	tolerated(0.28)	neutral(0.157)	HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1,superfamily_LDL_rcpt_classA_cys-rich
CARD6	84674	genome.wustl.edu	37	5	40843637	40843637	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032587.3	+1	reviewed	p.D223Y	0.515	118	0%	149	47.7%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
C6	729	genome.wustl.edu	37	5	41181626	41181626	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000065.2	-1	reviewed	p.F254L	1.000	238	0%	278	46.8%	0	-	benign(0.024)	tolerated(0.3)	neutral(0.030)	NULL
OXCT1	5019	genome.wustl.edu	37	5	41749686	41749686	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000436.3	-1	reviewed	p.E454D	0.995	412	0%	489	46%	19	42.1%	benign(0)	tolerated(0.27)	neutral(0.034)	HMMPfam_CoA_trans,superfamily_SSF100950
ZNF131	7690	genome.wustl.edu	37	5	43162022	43162022	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003432.1	+1	validated	p.R314Q	1.000	49	0%	58	39.7%	3	33.3%	probably_damaging(0.994)	deleterious(0.03)	deleterious(0.817)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
C5orf28	64417	genome.wustl.edu	37	5	43446451	43446451	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_022483.4	-1	validated	p.S174Y	1.000	178	0%	261	47.1%	14	28.5%	benign(0.163)	tolerated(0.09)	neutral(0.311)	NULL
HCN1	348980	genome.wustl.edu	37	5	45645425	45645425	+	Silent	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021072.2	-1	validated	p.L237	1.000	169	0%	172	46.5%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_SSF81324
ISL1	3670	genome.wustl.edu	37	5	50685598	50685598	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002202.2	+1	reviewed	p.C199	1.000	30	0%	55	45.5%	0	-	-	-	-	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
ITGA1	3672	genome.wustl.edu	37	5	52201674	52201674	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_181501.1	+1	reviewed	p.Q464R	1.000	194	0%	244	49.2%	6	0%	benign(0.106)	tolerated(0.26)	neutral(0.042)	HMMSmart_Int_alpha,superfamily_SSF69318
ITGA1	3672	genome.wustl.edu	37	5	52240815	52240815	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_181501.1	+1	reviewed	p.R1110W	0.998	214	0%	258	39.5%	2	0%	probably_damaging(0.977)	deleterious(0.02)	deleterious(0.802)	superfamily_SSF69179
ITGA2	3673	genome.wustl.edu	37	5	52360787	52360787	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002203.3	+1	reviewed	p.E550*	0.998	245	0%	250	42%	1	0%	-	-	-	HMMSmart_SM00191,superfamily_Integrin alpha N-terminal domain
ESM1	11082	genome.wustl.edu	37	5	54275225	54275225	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007036.4	-1	reviewed	p.E164*	1.000	196	0%	272	37.5%	1	0%	-	-	-	NULL
DHX29	54505	genome.wustl.edu	37	5	54572987	54572987	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_019030.2	-1	validated	p.Y745H	1.000	235	0%	236	42.4%	4	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_DEXDc,superfamily_SSF52540
SKIV2L2	23517	genome.wustl.edu	37	5	54635878	54635878	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015360.4	+1	validated	p.I186L	1.000	293	0%	361	49.3%	11	72.7%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_DEAD,HMMSmart_DEXDc,superfamily_SSF52540
IL6ST	3572	genome.wustl.edu	37	5	55237406	55237406	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002184.2	-1	reviewed	p.S754L	0.792	297	0%	328	45.4%	38	44.7%	possibly_damaging(0.8)	deleterious(0.01)	deleterious(0.707)	NULL
MAP3K1	4214	genome.wustl.edu	37	5	56176545	56176545	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005921.1	+1	validated	p.S699G	0.999	304	0%	361	46%	17	35.2%	possibly_damaging(0.9)	deleterious(0.03)	deleterious(0.721)	NULL
MAP3K1	4214	genome.wustl.edu	37	5	56178041	56178041	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005921.1	+1	validated	p.R1005I	0.997	152	0%	160	18.1%	22	18.1%	benign(0.071)	deleterious(0.02)	neutral(0.388)	NULL
GPBP1	65056	genome.wustl.edu	37	5	56531795	56531795	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001127235.2	+1	validated	p.P138	0.854	459	0%	506	26.5%	43	23.2%	-	-	-	NULL
PLK2	10769	genome.wustl.edu	37	5	57750765	57750765	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006622.2	-1	validated	p.M613I	1.000	228	0%	282	44.3%	16	18.7%	benign(0.042)	tolerated(0.54)	neutral(0.010)	HMMPfam_POLO_box,superfamily_SSF82615
PLK2	10769	genome.wustl.edu	37	5	57751158	57751158	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006622.2	-1	validated	p.T570M	1.000	157	0%	188	47.3%	14	28.5%	probably_damaging(0.984)	deleterious(0.01)	deleterious(0.836)	HMMPfam_POLO_box,superfamily_SSF82615
PLK2	10769	genome.wustl.edu	37	5	57751604	57751604	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006622.2	-1	validated	p.L463I	1.000	126	0%	126	46.8%	23	26%	possibly_damaging(0.496)	tolerated(0.36)	neutral(0.185)	NULL
PLK2	10769	genome.wustl.edu	37	5	57754906	57754906	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006622.2	-1	validated	p.K95T	1.000	372	0%	503	44.5%	4	50%	possibly_damaging(0.939)	deleterious(0)	deleterious(0.829)	HMMSmart_S_TKc,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
RAB3C	115827	genome.wustl.edu	37	5	57913579	57913579	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_138453.2	+1	provisional	p.S45Y	1.000	102	0%	148	41.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540
ELOVL7	79993	genome.wustl.edu	37	5	60060157	60060157	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001104558.1	-1	validated	p.I132	1.000	147	0%	186	43%	0	-	-	-	-	HMMPfam_ELO
C5orf43	643155	genome.wustl.edu	37	5	60455812	60455812	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001048249.3	-1	validated	p.E63*	1.000	679	0%	900	43.7%	27	37%	-	-	-	NULL
ZSWIM6	57688	genome.wustl.edu	37	5	60817166	60817166	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020928.1	+1	provisional	p.K470N	1.000	191	0%	216	41.2%	17	47%	possibly_damaging(0.484)	tolerated(0.2)	neutral(0.210)	NULL
TRIM23	373	genome.wustl.edu	37	5	64887675	64887675	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001656.3	-1	reviewed	p.R549Q	1.000	164	0%	226	40.3%	10	10%	probably_damaging(0.997)	tolerated(0.06)	deleterious(0.788)	HMMSmart_SM00175,HMMSmart_SM00178,HMMSmart_SM00177,PatternScan_ARF,HMMPfam_Arf,superfamily_P-loop containing nucleoside triphosphate hydrolases
C5orf44	80006	genome.wustl.edu	37	5	64960034	64960034	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000415825	+1	known	p.I4M	1.000	82	0%	149	47%	0	-	-	-	-	NULL
NLN	57486	genome.wustl.edu	37	5	65105431	65105431	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000509935	+1	known	p.R136*	0.291	213	0%	361	38.2%	8	37.5%	-	-	-	"HMMPfam_Peptidase_M3,superfamily_Metalloproteases (""zincins"") catalytic domain"
ERBB2IP	55914	genome.wustl.edu	37	5	65307885	65307885	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018695.2	+1	reviewed	p.E106K	1.000	127	0%	140	39.3%	1	0%	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	HMMPfam_LRR_1,superfamily_SSF52058
ERBB2IP	55914	genome.wustl.edu	37	5	65372746	65372746	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018695.2	+1	reviewed	p.K1326T	1.000	135	0%	175	45.1%	29	72.4%	probably_damaging(0.98)	tolerated(0.22)	neutral(0.466)	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ
SREK1	140890	genome.wustl.edu	37	5	65455141	65455141	+	Silent	SNP	G	G	T	rs72770236	byCluster;byFrequency;by1000genomes	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001077199.1	+1	validated	p.P130	0.070	167	0%	198	40.9%	16	56.2%	-	-	-	NULL
CD180	4064	genome.wustl.edu	37	5	66479210	66479210	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005582.2	-1	validated	p.T487	0.000	232	0%	248	41.1%	1	0%	-	-	-	superfamily_L domain-like
CD180	4064	genome.wustl.edu	37	5	66479404	66479404	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005582.2	-1	validated	p.E423K	0.030	316	0%	437	45.5%	1	100%	probably_damaging(0.996)	tolerated(0.2)	deleterious(0.511)	superfamily_L domain-like
PIK3R1	5295	genome.wustl.edu	37	5	67593425	67593425	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_181523.1	+1	reviewed	p.R724Q	1.000	139	0%	204	46.6%	63	38%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SH2 domain
RAD17	5884	genome.wustl.edu	37	5	68669671	68669671	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_133339.1	+1	reviewed	p.V19	0.993	134	0%	141	25.5%	4	50%	-	-	-	NULL
RAD17	5884	genome.wustl.edu	37	5	68682117	68682117	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_133339.1	+1	reviewed	p.S281Y	0.210	111	0%	117	47%	1	0%	benign(0.027)	deleterious(0.02)	neutral(0.385)	HMMPfam_Rad17,superfamily_P-loop containing nucleoside triphosphate hydrolases
MAP1B	4131	genome.wustl.edu	37	5	71490639	71490639	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005909.3	+1	validated	p.R486Q	1.000	41	0%	52	50%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MAP1B	4131	genome.wustl.edu	37	5	71491249	71491249	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005909.3	+1	validated	p.K689	1.000	274	0%	310	45.2%	0	-	-	-	-	NULL
MAP1B	4131	genome.wustl.edu	37	5	71493725	71493725	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005909.3	+1	validated	p.E1515*	1.000	176	0%	201	16.4%	2	0%	-	-	-	NULL
TNPO1	3842	genome.wustl.edu	37	5	72171523	72171523	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002270.3	+1	reviewed	p.R254*	1.000	201	0%	248	40.3%	26	11.5%	-	-	-	HMMPfam_HEAT,superfamily_ARM repeat
FCHO2	115548	genome.wustl.edu	37	5	72333029	72333029	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_138782.2	+1	validated	p.D301Y	1.000	167	0%	176	17.6%	1	100%	probably_damaging(0.993)	deleterious(0.02)	deleterious(0.833)	NULL
FCHO2	115548	genome.wustl.edu	37	5	72348189	72348189	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_138782.2	+1	validated	p.S343I	1.000	241	0.4%	310	41.6%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
UTP15	84135	genome.wustl.edu	37	5	72864327	72864327	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032175.2	+1	validated	p.R89Q	1.000	414	0%	481	40.1%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
RGNEF	64283	genome.wustl.edu	37	5	73048854	73048854	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001080479.2	+1	reviewed	p.R101H	0.876	40	0%	50	54%	2	100%	benign(0.068)	deleterious(0)	neutral(0.449)	NULL
HEXB	3074	genome.wustl.edu	37	5	73989527	73989527	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000521.3	+1	reviewed	p.R170Q	1.000	228	0%	293	39.9%	75	41.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Glyco_hydro_20b,superfamily_beta-N-acetylhexosaminidase-like domain
ANKRD31	256006	genome.wustl.edu	37	5	74442458	74442458	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000274361	-1	known	p.K926	0.007	50	2%	56	41.1%	0	-	-	-	-	superfamily_ANK
HMGCR	3156	genome.wustl.edu	37	5	74640079	74640079	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000859.2	+1	reviewed	p.G96D	1.000	482	0%	550	38.9%	46	56.5%	-	-	-	superfamily_Multidrug efflux transporter AcrB transmembrane domain
POLK	51426	genome.wustl.edu	37	5	74882875	74882875	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016218.2	+1	validated	p.S417	0.985	580	0%	547	39.1%	6	33.3%	-	-	-	HMMPfam_IMS,superfamily_Lesion bypass DNA polymerase (Y-family) little finger domain
SV2C	22987	genome.wustl.edu	37	5	75591739	75591739	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014979.1	+1	provisional	p.H492N	0.995	122	0.8%	187	46%	0	-	benign(0.007)	tolerated(0.08)	neutral(0.300)	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
IQGAP2	10788	genome.wustl.edu	37	5	75969835	75969835	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006633.2	+1	validated	p.D1090N	0.999	242	0.8%	337	42.1%	16	37.5%	benign(0.005)	tolerated(0.22)	neutral(0.042)	HMMPfam_RasGAP,HMMSmart_SM00323,superfamily_GTPase activation domain GAP
IQGAP2	10788	genome.wustl.edu	37	5	75993836	75993836	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006633.2	+1	validated	p.R1411C	1.000	131	0%	163	45.4%	11	18.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RasGAP_C
AGGF1	55109	genome.wustl.edu	37	5	76343996	76343996	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018046.3	+1	validated	p.K404N	1.000	261	0.4%	335	43.3%	35	54.2%	possibly_damaging(0.677)	tolerated(0.06)	deleterious(0.564)	NULL
PDE8B	8622	genome.wustl.edu	37	5	76715650	76715650	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003719.2	+1	validated	p.T730P	1.000	107	0%	131	30.5%	5	0%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_PDEase_I,HMMSmart_SM00471,superfamily_HD-domain/PDEase-like
WDR41	55255	genome.wustl.edu	37	5	76758930	76758930	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018268.2	-1	validated	p.R113I	0.972	239	0%	267	25.5%	20	15%	possibly_damaging(0.922)	deleterious(0)	deleterious(0.816)	HMMSmart_WD40,superfamily_WD40_like,PatternScan_WD_REPEATS_1,HMMPfam_WD40
AP3B1	8546	genome.wustl.edu	37	5	77334942	77334942	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003664.3	-1	reviewed	p.R912*	0.421	510	0%	651	39%	7	0%	-	-	-	NULL
JMY	133746	genome.wustl.edu	37	5	78611996	78611996	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152405.4	+1	validated	p.E945*	1.000	156	0%	178	33.7%	1	0%	-	-	-	NULL
CMYA5	202333	genome.wustl.edu	37	5	79028387	79028387	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_153610.3	+1	validated	p.E1267*	0.012	57	0%	80	45%	0	-	-	-	-	NULL
CMYA5	202333	genome.wustl.edu	37	5	79033314	79033314	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_153610.3	+1	validated	p.S2909Y	0.022	105	0%	122	44.3%	1	100%	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	NULL
CMYA5	202333	genome.wustl.edu	37	5	79034081	79034081	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_153610.3	+1	validated	p.L3165I	0.009	56	0%	33	33.3%	3	66.6%	possibly_damaging(0.93)	deleterious(0)	deleterious(0.821)	NULL
SPZ1	84654	genome.wustl.edu	37	5	79616266	79616266	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032567.3	+1	validated	p.D78Y	0.097	109	0%	120	42.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SPZ1	84654	genome.wustl.edu	37	5	79617154	79617154	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032567.3	+1	validated	p.E374*	0.000	59	0%	59	20.3%	0	-	-	-	-	NULL
ZFYVE16	9765	genome.wustl.edu	37	5	79768693	79768693	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001105251.1	+1	validated	p.E1380*	1.000	269	0%	301	42.5%	9	11.1%	-	-	-	NULL
ANKRD34B	340120	genome.wustl.edu	37	5	79855678	79855678	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001004441.2	-1	validated	p.K54R	0.541	107	0%	158	44.3%	0	-	benign(0.057)	tolerated(0.62)	neutral(0.007)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
RASGRF2	5924	genome.wustl.edu	37	5	80388686	80388686	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006909.1	+1	validated	p.S486Y	1.000	191	0%	249	43.4%	0	-	possibly_damaging(0.822)	deleterious(0)	deleterious(0.756)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
ACOT12	134526	genome.wustl.edu	37	5	80631636	80631636	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_130767.2	-1	validated	p.R405C	0.015	177	0%	151	40.4%	0	-	benign(0.001)	tolerated(0.19)	neutral(0.050)	HMMPfam_START,superfamily_Bet v1-like
ACOT12	134526	genome.wustl.edu	37	5	80681626	80681626	+	Silent	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_130767.2	-1	validated	p.V49	0.957	144	0%	182	47.3%	0	-	-	-	-	HMMPfam_4HBT,superfamily_Thioesterase/thiol ester dehydrase-isomerase
VCAN	1462	genome.wustl.edu	37	5	82817772	82817772	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004385.4	+1	reviewed	p.R1216K	0.771	214	0%	272	24.3%	6	16.6%	benign(0.001)	tolerated(1)	-	NULL
VCAN	1462	genome.wustl.edu	37	5	82833372	82833372	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004385.4	+1	reviewed	p.K1517T	0.002	139	0%	148	45.3%	10	50%	benign(0.003)	-	-	NULL
VCAN	1462	genome.wustl.edu	37	5	82834409	82834409	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004385.4	+1	reviewed	p.E1863K	0.000	74	0%	105	44.8%	9	22.2%	benign(0)	-	-	NULL
RASA1	5921	genome.wustl.edu	37	5	86627206	86627206	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002890.1	+1	reviewed	p.R194H	1.000	278	0%	351	44.7%	20	70%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain
RASA1	5921	genome.wustl.edu	37	5	86637124	86637124	+	Silent	SNP	A	A	C	rs188475610	by1000genomes	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002890.1	+1	reviewed	p.P345	1.000	54	0%	35	60%	3	0%	-	-	-	superfamily_SH2 domain
RASA1	5921	genome.wustl.edu	37	5	86665697	86665697	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002890.1	+1	reviewed	p.E560*	1.000	166	0%	231	43.7%	7	42.8%	-	-	-	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
RASA1	5921	genome.wustl.edu	37	5	86670076	86670076	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002890.1	+1	reviewed	p.V625L	1.000	207	0%	317	42.3%	3	0%	possibly_damaging(0.799)	tolerated(0.15)	deleterious(0.542)	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
RASA1	5921	genome.wustl.edu	37	5	86685312	86685312	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002890.1	+1	reviewed	p.R1010*	0.975	81	0%	98	43.9%	40	75%	-	-	-	HMMSmart_SM00323,superfamily_GTPase activation domain GAP
TMEM161B	153396	genome.wustl.edu	37	5	87494938	87494938	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_153354.3	-1	provisional	p.R315Q	1.000	115	0%	151	47.7%	10	40%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_Tmemb_161AB
GPR98	84059	genome.wustl.edu	37	5	89949105	89949105	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000504142	+1	known	p.L827I	0.092	139	0%	216	44%	0	-	-	-	-	NULL
GPR98	84059	genome.wustl.edu	37	5	89979777	89979777	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032119.3	+1	reviewed	p.V2013	0.029	171	0%	171	40.9%	0	-	-	-	-	HMMPfam_Calx-beta,HMMSmart_SM00237
GPR98	84059	genome.wustl.edu	37	5	90059213	90059213	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032119.3	+1	reviewed	p.R4071Q	0.001	93	0%	140	55%	5	40%	benign(0.15)	tolerated(0.46)	neutral(0.025)	HMMPfam_Calx-beta,HMMSmart_SM00237
GPR98	84059	genome.wustl.edu	37	5	90087089	90087089	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032119.3	+1	reviewed	p.E4815K	0.833	110	0%	140	14.3%	3	0%	possibly_damaging(0.614)	tolerated(0.2)	neutral(0.262)	NULL
GPR98	84059	genome.wustl.edu	37	5	90101168	90101168	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032119.3	+1	reviewed	p.S4910Y	0.504	187	0%	235	43.4%	0	-	probably_damaging(0.992)	tolerated(0.11)	deleterious(0.719)	NULL
ARRDC3	57561	genome.wustl.edu	37	5	90670044	90670044	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020801.2	-1	validated	p.L307R	1.000	248	0%	303	41.3%	41	36.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Arrestin_C,superfamily_Ig_E-set
FAM172A	83989	genome.wustl.edu	37	5	93386467	93386467	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032042.5	-1	validated	p.W93L	1.000	398	0%	518	37.8%	0	-	benign(0.235)	tolerated(0.26)	neutral(0.058)	NULL
KIAA0825	285600	genome.wustl.edu	37	5	93722035	93722035	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001145678.1	-1	validated	p.T1177	0.114	251	0%	282	25.2%	0	-	-	-	-	NULL
KIAA0825	285600	genome.wustl.edu	37	5	93731966	93731966	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001145678.1	-1	validated	p.E1046*	1.000	165	0%	194	43.3%	0	-	-	-	-	NULL
LOC100131573	100131573	genome.wustl.edu	37	5	93929100	93929100	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_001716404.1	+1	model	p.E227*	0.006	79	0%	85	49.4%	0	-	-	-	-	NULL
MCTP1	79772	genome.wustl.edu	37	5	94207064	94207064	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024717.4	-1	validated	p.R699*	1.000	210	0%	278	41.4%	1	0%	-	-	-	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
FAM81B	153643	genome.wustl.edu	37	5	94785856	94785856	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152548.2	+1	validated	p.F410C	1.000	356	0%	427	42.4%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
TTC37	9652	genome.wustl.edu	37	5	94838608	94838608	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014639.2	-1	provisional	p.V1106A	0.194	362	0%	470	24.5%	22	36.3%	benign(0)	tolerated(1)	-	superfamily_Prenyl_trans
TTC37	9652	genome.wustl.edu	37	5	94858991	94858991	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014639.2	-1	provisional	p.A558T	1.000	154	0%	222	41.9%	19	36.8%	unknown(0)	-	-	superfamily_Prenyl_trans
ARSK	153642	genome.wustl.edu	37	5	94927197	94927197	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_198150.2	+1	validated	p.R322*	0.998	177	0.6%	276	47.8%	3	0%	-	-	-	HMMPfam_Sulfatase,superfamily_Alkaline_phosphatase_core
ELL2	22936	genome.wustl.edu	37	5	95242391	95242391	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012081.5	-1	validated	p.R193*	1.000	325	0%	451	43.2%	3	33.3%	-	-	-	HMMPfam_ELL
PCSK1	5122	genome.wustl.edu	37	5	95733079	95733079	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000439.4	-1	reviewed	p.E561	1.000	163	0%	245	45.7%	0	-	-	-	-	HMMPfam_P_proprotein,superfamily_Gal_bind_like
PCSK1	5122	genome.wustl.edu	37	5	95748142	95748142	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000439.4	-1	reviewed	p.I254M	1.000	227	0%	255	38.8%	0	-	probably_damaging(0.991)	tolerated(0.16)	deleterious(0.504)	HMMPfam_Peptidase_S8,superfamily_Pept_S8_S53
ERAP1	51752	genome.wustl.edu	37	5	96139390	96139390	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016442.3	-1	validated	p.T80	0.000	300	0%	420	44.5%	48	43.7%	-	-	-	HMMPfam_Peptidase_M1,superfamily_SSF63737
ERAP2	64167	genome.wustl.edu	37	5	96215677	96215677	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001130140.1	+1	validated	p.K96N	1.000	134	0%	151	33.8%	13	0%	probably_damaging(0.985)	tolerated(0.28)	neutral(0.464)	HMMPfam_Peptidase_M1,superfamily_Leukotriene A4 hydrolase N-terminal domain
LNPEP	4012	genome.wustl.edu	37	5	96333769	96333769	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005575.2	+1	reviewed	p.N525H	1.000	230	0%	292	48.3%	2	100%	possibly_damaging(0.951)	deleterious(0.01)	deleterious(0.800)	"HMMPfam_Peptidase_M1,superfamily_Metalloproteases (""zincins"") catalytic domain"
LIX1	167410	genome.wustl.edu	37	5	96430569	96430569	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_153234.4	-1	validated	p.F244L	1.000	138	0%	185	50.3%	1	0%	possibly_damaging(0.792)	deleterious(0)	deleterious(0.742)	NULL
RIOK2	55781	genome.wustl.edu	37	5	96504510	96504510	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018343.2	-1	validated	p.R276C	1.000	177	0%	192	40.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RIO1
CHD1	1105	genome.wustl.edu	37	5	98218901	98218901	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001270.2	-1	reviewed	p.G870V	1.000	160	0%	178	19.1%	2	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_P-loop containing nucleoside triphosphate hydrolases
SLCO4C1	353189	genome.wustl.edu	37	5	101631807	101631807	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_180991.4	-1	validated	p.E54*	0.000	148	0%	233	44.2%	0	-	-	-	-	NULL
PAM	5066	genome.wustl.edu	37	5	102343326	102343326	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000919.3	+1	reviewed	p.F727S	1.000	247	0%	309	32%	95	24.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF101898
FBXL17	64839	genome.wustl.edu	37	5	107216871	107216871	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000496714	-1	known	p.A213V	1.000	134	0%	224	41.1%	12	66.6%	probably_damaging(0.959)	tolerated(0.06)	deleterious(0.725)	superfamily_SSF52047
FBXL17	64839	genome.wustl.edu	37	5	107700584	107700584	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000496714	-1	known	p.K12T	1.000	137	0%	196	50.5%	9	66.6%	probably_damaging(0.983)	tolerated(0.38)	neutral(0.447)	superfamily_SSF52047
MAN2A1	4124	genome.wustl.edu	37	5	109103261	109103261	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002372.2	+1	reviewed	p.A287	0.729	252	0%	294	45.9%	12	50%	-	-	-	HMMPfam_Glyco_hydro_38,superfamily_Glyco_hydro/deAcase_b/a-brl
WDR36	134430	genome.wustl.edu	37	5	110446590	110446590	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_139281.2	+1	reviewed	p.K571N	0.990	92	0%	182	51.1%	2	50%	possibly_damaging(0.94)	tolerated(0.24)	neutral(0.422)	superfamily_WD40_like
WDR36	134430	genome.wustl.edu	37	5	110456751	110456751	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_139281.2	+1	reviewed	p.S743L	1.000	181	0%	221	38.9%	6	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Utp21
WDR36	134430	genome.wustl.edu	37	5	110461356	110461356	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_139281.2	+1	reviewed	p.T857A	1.000	281	0%	373	44%	10	60%	benign(0.228)	tolerated(0.34)	neutral(0.045)	HMMPfam_Utp21
CAMK4	814	genome.wustl.edu	37	5	110710561	110710561	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001744.3	+1	reviewed	p.I85T	1.000	203	0%	210	44.8%	0	-	probably_damaging(0.978)	tolerated(0.37)	neutral(0.440)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
DCP2	167227	genome.wustl.edu	37	5	112349069	112349069	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000513585	+1	known	p.C365*	0.002	264	0%	348	43.7%	6	33.3%	benign(0.344)	deleterious(0.02)	deleterious(0.491)	NULL
MCC	4163	genome.wustl.edu	37	5	112364657	112364657	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001085377.1	-1	reviewed	p.F951	0.187	220	0%	252	48.4%	1	100%	-	-	-	HMMPfam_MCC-bdg_PDZ
MCC	4163	genome.wustl.edu	37	5	112420989	112420989	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001085377.1	-1	reviewed	p.R473*	0.967	210	0.5%	294	44.9%	4	25%	-	-	-	HMMPfam_MCC-bdg_PDZ
YTHDC2	64848	genome.wustl.edu	37	5	112860844	112860844	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_022828.3	+1	validated	p.E149K	1.000	237	0%	305	41.3%	1	0%	benign(0.001)	tolerated(0.07)	neutral(0.319)	NULL
YTHDC2	64848	genome.wustl.edu	37	5	112862456	112862456	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_022828.3	+1	validated	p.E217*	1.000	56	0%	48	54.2%	0	-	-	-	-	HMMSmart_DEXDc,superfamily_SSF52540
YTHDC2	64848	genome.wustl.edu	37	5	112889709	112889709	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_022828.3	+1	validated	p.K708T	1.000	432	0%	529	21.4%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Helicase_C,HMMSmart_HELICc,superfamily_SSF52540
PGGT1B	5229	genome.wustl.edu	37	5	114557615	114557615	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005023.3	-1	validated	p.R250M	1.000	371	0%	441	40.6%	6	0%	probably_damaging(0.953)	deleterious(0)	deleterious(0.841)	HMMPfam_Prenyltrans,superfamily_Terpenoid cyclases/Protein prenyltransferases
PGGT1B	5229	genome.wustl.edu	37	5	114573622	114573622	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005023.3	-1	validated	p.D138N	1.000	104	0%	103	13.6%	1	0%	benign(0.149)	deleterious(0.03)	neutral(0.378)	superfamily_Terpenoid cyclases/Protein prenyltransferases
CCDC112	153733	genome.wustl.edu	37	5	114607094	114607094	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001040440.2	-1	validated	p.K383T	0.901	515	0%	499	41.9%	2	0%	benign(0.155)	deleterious(0.03)	neutral(0.378)	NULL
CCDC112	153733	genome.wustl.edu	37	5	114607180	114607180	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001040440.2	-1	validated	p.Q354H	0.999	734	0%	764	46.7%	3	66.6%	possibly_damaging(0.822)	tolerated(0.12)	deleterious(0.572)	NULL
TICAM2	353376	genome.wustl.edu	37	5	114916331	114916331	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021649.5	-1	validated	p.R208I	0.987	199	0%	207	36.7%	0	-	possibly_damaging(0.903)	deleterious(0)	deleterious(0.802)	superfamily_TIR
AQPEP	206338	genome.wustl.edu	37	5	115323514	115323514	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_173800.4	+1	validated	p.R328H	0.998	270	0%	321	49.8%	1	0%	probably_damaging(0.999)	tolerated(0.08)	deleterious(0.790)	"HMMPfam_Peptidase_M1,superfamily_Metalloproteases (""zincins"") catalytic domain"
DMXL1	1657	genome.wustl.edu	37	5	118450213	118450213	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005509.4	+1	validated	p.E181*	1.000	310	0%	356	41.3%	1	0%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like
DMXL1	1657	genome.wustl.edu	37	5	118484577	118484577	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005509.4	+1	validated	p.L1019I	0.059	161	0%	169	27.2%	2	0%	benign(0.001)	tolerated(0.58)	neutral(0.005)	NULL
DMXL1	1657	genome.wustl.edu	37	5	118560444	118560444	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005509.4	+1	validated	p.S2752Y	1.000	224	0%	275	36.4%	9	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00320,superfamily_WD40 repeat-like
HSD17B4	3295	genome.wustl.edu	37	5	118813124	118813124	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000414.2	+1	reviewed	p.R121I	0.980	159	0%	180	44.4%	31	41.9%	probably_damaging(0.978)	deleterious(0.02)	deleterious(0.803)	HMMPfam_adh_short,superfamily_NAD(P)-bd
ZNF474	133923	genome.wustl.edu	37	5	121488107	121488107	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_207317.1	+1	provisional	p.S141Y	0.008	75	0%	90	12.2%	0	-	possibly_damaging(0.454)	deleterious(0.03)	deleterious(0.513)	NULL
ZNF474	133923	genome.wustl.edu	37	5	121488626	121488626	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_207317.1	+1	provisional	p.K314T	0.000	121	0%	148	34.5%	1	100%	benign(0.004)	deleterious(0.03)	neutral(0.364)	NULL
SNX2	6643	genome.wustl.edu	37	5	122137621	122137621	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003100.2	+1	reviewed	p.E150*	1.000	339	0%	374	38.8%	20	5%	-	-	-	HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain
LMNB1	4001	genome.wustl.edu	37	5	126140499	126140499	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005573.2	+1	reviewed	p.A131T	1.000	253	0%	349	39.8%	56	50%	benign(0.064)	deleterious(0.03)	neutral(0.368)	HMMPfam_Filament
LMNB1	4001	genome.wustl.edu	37	5	126145904	126145904	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005573.2	+1	reviewed	p.T225	0.070	176	0%	183	45.9%	108	38.8%	-	-	-	HMMPfam_Filament
LMNB1	4001	genome.wustl.edu	37	5	126156774	126156774	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005573.2	+1	reviewed	p.E445K	1.000	273	0%	358	38%	99	42.4%	probably_damaging(0.989)	tolerated(0.06)	deleterious(0.762)	HMMPfam_IF_tail,superfamily_Lamin A/C globular tail domain
FBN2	2201	genome.wustl.edu	37	5	127729053	127729053	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001999.3	-1	reviewed	p.R414C	1.000	58	0%	65	56.9%	0	-	probably_damaging(0.987)	deleterious(0.03)	deleterious(0.801)	HMMPfam_TB,superfamily_TB module/8-cys domain,superfamily_Concanavalin A-like lectins/glucanases
ADAMTS19	171019	genome.wustl.edu	37	5	128861998	128861998	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_133638.3	+1	reviewed	p.R306I	1.000	132	0%	156	45.5%	1	0%	benign(0)	tolerated(0.2)	neutral(0.049)	NULL
RAPGEF6	51735	genome.wustl.edu	37	5	130846112	130846112	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016340.5	-1	validated	p.E234K	1.000	187	0%	246	44.3%	3	66.6%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
FNIP1	96459	genome.wustl.edu	37	5	131007628	131007628	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_133372.2	-1	validated	p.E837K	1.000	102	0%	119	42%	2	0%	benign(0.195)	deleterious(0.02)	neutral(0.402)	NULL
CSF2	1437	genome.wustl.edu	37	5	131409798	131409798	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000758.2	+1	reviewed	p.E62*	0.163	62	0%	86	43%	0	-	-	-	-	HMMPfam_GM_CSF,HMMSmart_SM00040,superfamily_4-helical cytokines
P4HA2	8974	genome.wustl.edu	37	5	131539816	131539816	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001142599.1	-1	reviewed	p.K370N	1.000	269	0.7%	376	28.5%	107	23.3%	possibly_damaging(0.617)	tolerated(0.47)	neutral(0.226)	HMMSmart_SM00702
KIF3A	11127	genome.wustl.edu	37	5	132038594	132038594	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007054.5	-1	validated	p.E517*	1.000	441	0%	630	44.1%	0	-	-	-	-	NULL
SHROOM1	134549	genome.wustl.edu	37	5	132159327	132159327	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_133456.2	-1	validated	p.I647	0.563	69	0%	105	16.2%	11	0%	-	-	-	HMMPfam_ASD2
GDF9	2661	genome.wustl.edu	37	5	132197744	132197744	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005260.3	-1	reviewed	p.P301H	0.000	87	0%	100	50%	1	0%	benign(0.006)	deleterious(0.02)	neutral(0.383)	NULL
AFF4	27125	genome.wustl.edu	37	5	132222032	132222032	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014423.3	-1	validated	p.K1023N	1.000	155	0%	195	13.8%	8	0%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_AF-4
HSPA4	3308	genome.wustl.edu	37	5	132406147	132406147	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002154.3	+1	validated	p.E130K	1.000	306	0.3%	358	29.6%	20	10%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_HSP70,superfamily_SSF53067
HSPA4	3308	genome.wustl.edu	37	5	132412421	132412421	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002154.3	+1	validated	p.E247*	1.000	229	0%	298	42.6%	8	12.5%	-	-	-	HMMPfam_HSP70,superfamily_SSF53067
HSPA4	3308	genome.wustl.edu	37	5	132412476	132412476	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002154.3	+1	validated	p.R265Q	1.000	230	0%	323	29.4%	23	4.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HSP70,superfamily_SSF53067
HSPA4	3308	genome.wustl.edu	37	5	132424147	132424147	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002154.3	+1	validated	p.R346Q	1.000	154	0%	241	43.2%	25	4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HSP70,PatternScan_HSP70_3,superfamily_SSF53067
FSTL4	23105	genome.wustl.edu	37	5	132556639	132556639	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000360575	-1	known	p.S69Y	0.000	31	0%	48	47.9%	1	100%	-	-	-	NULL
CDKL3	51265	genome.wustl.edu	37	5	133657506	133657506	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001113575.1	-1	reviewed	p.L210I	1.000	186	0%	192	49%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
CDKL3	51265	genome.wustl.edu	37	5	133686005	133686005	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001113575.1	-1	reviewed	p.T158	0.354	234	0%	277	11.6%	1	0%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
CDKL3	51265	genome.wustl.edu	37	5	133702067	133702067	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001113575.1	-1	reviewed	p.E50*	1.000	233	0%	269	48.3%	0	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
PHF15	23338	genome.wustl.edu	37	5	133897983	133897983	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015288.4	+1	provisional	p.R260*	1.000	58	0%	73	42.5%	1	0%	-	-	-	NULL
DDX46	9879	genome.wustl.edu	37	5	134120163	134120163	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014829.2	+1	reviewed	p.A425V	1.000	289	0%	378	44.2%	18	61.1%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_DEAD,HMMSmart_DEXDc,superfamily_SSF52540
TXNDC15	79770	genome.wustl.edu	37	5	134235248	134235248	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024715.3	+1	validated	p.I319T	0.912	341	0%	414	44.7%	24	50%	benign(0)	tolerated(0.64)	neutral(0.003)	NULL
ENSG00000145832	0	genome.wustl.edu	37	5	135207497	135207497	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000274513	+1	known	p.G257R	0.008	52	0%	55	30.9%	0	-	probably_damaging(1)	-	-	NULL
FBXL21	26223	genome.wustl.edu	37	5	135276209	135276209	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012159.4	+1	validated	p.F174C	1.000	116	0%	170	52.9%	0	-	possibly_damaging(0.823)	deleterious(0)	deleterious(0.756)	superfamily_RNI-like
FBXL21	26223	genome.wustl.edu	37	5	135276280	135276280	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012159.4	+1	validated	p.L198I	1.000	155	0%	250	39.2%	0	-	probably_damaging(0.987)	deleterious(0.01)	deleterious(0.842)	superfamily_RNI-like
LECT2	3950	genome.wustl.edu	37	5	135283138	135283138	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002302.2	-1	reviewed	p.P113H	0.601	316	0%	352	42.3%	0	-	benign(0.358)	tolerated(0.05)	neutral(0.459)	HMMPfam_Peptidase_M23
KLHL3	26249	genome.wustl.edu	37	5	136997681	136997681	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017415.2	-1	validated	p.E226*	0.998	186	0%	260	45.8%	1	100%	-	-	-	HMMPfam_BACK
FAM13B	51306	genome.wustl.edu	37	5	137289150	137289150	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016603.2	-1	validated	p.R553*	1.000	321	0%	397	43.1%	2	50%	-	-	-	NULL
BRD8	10902	genome.wustl.edu	37	5	137486441	137486441	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_139199.1	-1	reviewed	p.S1038N	0.972	187	0%	228	19.7%	0	-	benign(0.081)	tolerated(0.29)	neutral(0.035)	NULL
BRD8	10902	genome.wustl.edu	37	5	137496686	137496686	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_139199.1	-1	reviewed	p.R774H	1.000	153	0%	193	49.2%	79	40.5%	possibly_damaging(0.807)	deleterious(0)	deleterious(0.748)	HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain
CDC23	8697	genome.wustl.edu	37	5	137536911	137536911	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004661.3	-1	reviewed	p.R180Q	1.000	273	0%	356	44.7%	9	22.2%	probably_damaging(0.967)	deleterious(0.02)	deleterious(0.792)	HMMSmart_SM00028,superfamily_TPR-like
CDC25C	995	genome.wustl.edu	37	5	137622214	137622214	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001790.3	-1	reviewed	p.E378*	1.000	137	0%	194	44.3%	3	0%	-	-	-	HMMPfam_Rhodanese,HMMSmart_SM00450,superfamily_Rhodanese/Cell cycle control phosphatase
KDM3B	51780	genome.wustl.edu	37	5	137727239	137727239	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016604.3	+1	validated	p.F640L	1.000	18	0%	20	45%	18	61.1%	possibly_damaging(0.792)	deleterious(0.01)	deleterious(0.703)	NULL
LRRTM2	26045	genome.wustl.edu	37	5	138208924	138208924	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015564.2	-1	validated	p.F442L	1.000	255	0%	271	16.6%	0	-	possibly_damaging(0.496)	deleterious(0.01)	deleterious(0.571)	NULL
WDR55	54853	genome.wustl.edu	37	5	140048020	140048020	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017706.4	+1	validated	p.D105Y	1.000	142	0.7%	221	11.8%	45	2.2%	unknown(0)	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
HARS	3035	genome.wustl.edu	37	5	140054387	140054387	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002109.3	-1	reviewed	p.N445	1.000	246	0%	320	45.9%	98	69.3%	-	-	-	HMMPfam_HGTP_anticodon,superfamily_Anticodon_bd
PCDHA1	56147	genome.wustl.edu	37	5	140168122	140168122	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018900.2	+1	reviewed	p.S749	0.005	72	0%	109	50.5%	1	0%	-	-	-	NULL
PCDHA2	56146	genome.wustl.edu	37	5	140175582	140175582	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018905.2	+1	reviewed	p.D345Y	1.000	66	0%	103	13.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like
PCDHA6	56142	genome.wustl.edu	37	5	140208151	140208151	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018909.2	+1	reviewed	p.D159N	0.999	95	0%	131	54.2%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA6	56142	genome.wustl.edu	37	5	140208403	140208403	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018909.2	+1	reviewed	p.E243K	0.002	74	0%	106	18.9%	0	-	benign(0.103)	deleterious(0.03)	neutral(0.372)	superfamily_Cadherin-like
PCDHA6	56142	genome.wustl.edu	37	5	140208616	140208616	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018909.2	+1	reviewed	p.N314H	0.000	106	0%	182	45.1%	0	-	possibly_damaging(0.832)	tolerated(0.09)	deleterious(0.613)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA6	56142	genome.wustl.edu	37	5	140209591	140209591	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018909.2	+1	reviewed	p.E639K	0.982	22	0%	54	22.2%	1	0%	possibly_damaging(0.753)	deleterious(0)	deleterious(0.721)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
ENSG00000249608	0	genome.wustl.edu	37	5	140248633	140248633	+	RNA	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000512753	-1	known	NULL	0.004	174	0%	210	22.4%	0	-	-	-	-	-
PCDHA12	56137	genome.wustl.edu	37	5	140256945	140256945	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018903.2	+1	reviewed	p.E630K	1.000	68	0%	135	35.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA13	56136	genome.wustl.edu	37	5	140263893	140263893	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018904.2	+1	reviewed	p.S680	0.000	11	0%	45	48.9%	0	-	-	-	-	NULL
PCDHAC2	56134	genome.wustl.edu	37	5	140389278	140389278	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018899.5	+1	reviewed	p.K927T	1.000	85	0%	118	14.4%	7	42.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PCDHB1	29930	genome.wustl.edu	37	5	140432091	140432091	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_013340.2	+1	reviewed	p.E346K	0.999	155	0.6%	194	44.8%	0	-	benign(0.085)	tolerated(0.07)	neutral(0.325)	superfamily_Cadherin
PCDHB3	56132	genome.wustl.edu	37	5	140481610	140481610	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018937.2	+1	reviewed	p.F459	0.000	64	0%	91	50.5%	5	20%	-	-	-	HMMPfam_Cadherin,superfamily_Cadherin-like
PCDHB17	54661	genome.wustl.edu	37	5	140536771	140536771	+	RNA	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NR_001280.1	+1	provisional	NULL	0.007	52	0%	64	28.1%	0	-	-	-	-	-
PCDHB7	56129	genome.wustl.edu	37	5	140553608	140553608	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018940.2	+1	reviewed	p.E398K	0.014	111	0.9%	144	43.1%	2	0%	benign(0.001)	tolerated(0.83)	neutral(0.001)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHB7	56129	genome.wustl.edu	37	5	140553731	140553731	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018940.2	+1	reviewed	p.V439M	0.306	167	0%	227	45.4%	6	16.6%	probably_damaging(0.968)	deleterious(0)	deleterious(0.855)	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like
PCDHB8	56128	genome.wustl.edu	37	5	140557851	140557851	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_019120.2	+1	reviewed	p.N79S	0.079	392	0%	479	10.4%	1	0%	benign(0.002)	tolerated(0.28)	neutral(0.032)	HMMSmart_CA,HMMPfam_Cadherin_2,superfamily_Cadherin
PCDHB10	56126	genome.wustl.edu	37	5	140572275	140572275	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018930.3	+1	reviewed	p.K50N	0.824	278	0%	373	36.5%	1	0%	benign(0.011)	deleterious(0.03)	neutral(0.365)	HMMPfam_Cadherin_2,superfamily_Cadherin
PCDHB10	56126	genome.wustl.edu	37	5	140572815	140572815	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018930.3	+1	reviewed	p.I230	0.000	85	0%	109	46.8%	7	28.5%	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin
PCDHB10	56126	genome.wustl.edu	37	5	140573743	140573743	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018930.3	+1	reviewed	p.A540T	0.002	36	0%	100	21%	10	0%	possibly_damaging(0.874)	tolerated(0.05)	deleterious(0.685)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB11	56125	genome.wustl.edu	37	5	140581716	140581716	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018931.2	+1	reviewed	p.R790Q	0.000	155	0%	192	41.1%	1	100%	benign(0.001)	tolerated(0.2)	neutral(0.049)	NULL
ENSG00000250004	0	genome.wustl.edu	37	5	140605497	140605497	+	RNA	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000515856	-1	novel	NULL	0.000	60	0%	69	44.9%	1	100%	-	-	-	-
ENSG00000251462	0	genome.wustl.edu	37	5	140619982	140619982	+	RNA	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000503443	-1	known	NULL	0.349	8	0.000	9	0.556	0	-	-	-	-	-
PCDHB15	56121	genome.wustl.edu	37	5	140626585	140626585	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018935.2	+1	reviewed	p.S480L	0.069	64	0%	87	50.6%	4	0%	benign(0.429)	tolerated(0.47)	neutral(0.151)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHGA1	56114	genome.wustl.edu	37	5	140712719	140712719	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_031993.1	+1	reviewed	p.S823Y	0.000	71	0%	72	36.1%	1	100%	possibly_damaging(0.745)	-	-	NULL
PCDHGA4	56111	genome.wustl.edu	37	5	140735092	140735092	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018917.2	+1	reviewed	p.L109I	0.993	102	0%	141	40.4%	2	50%	-	-	-	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like
PCDHGA5	56110	genome.wustl.edu	37	5	140744697	140744697	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018918.2	+1	reviewed	p.T267M	0.938	48	0%	49	42.9%	3	33.3%	probably_damaging(0.995)	deleterious(0.02)	deleterious(0.841)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA5	56110	genome.wustl.edu	37	5	140744961	140744961	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018918.2	+1	reviewed	p.S355L	0.004	132	0%	223	29.1%	0	-	benign(0.005)	deleterious(0.05)	neutral(0.345)	HMMPfam_Cadherin,superfamily_Cadherin-like
PCDHGA5	56110	genome.wustl.edu	37	5	140745998	140745998	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018918.2	+1	reviewed	p.S701P	0.992	36	0%	40	47.5%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PCDHGB3	56102	genome.wustl.edu	37	5	140751687	140751687	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018924.2	+1	reviewed	p.D576N	1.000	21	0%	35	42.9%	1	100%	-	-	-	HMMPfam_Cadherin,superfamily_Cadherin-like
PCDHGA6	56109	genome.wustl.edu	37	5	140754184	140754184	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018919.2	+1	reviewed	p.F178	1.000	34	0%	51	45.1%	3	33.3%	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA7	56108	genome.wustl.edu	37	5	140762804	140762804	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018920.2	+1	reviewed	p.K113T	0.789	62	0%	78	35.9%	0	-	benign(0.002)	tolerated(0.05)	neutral(0.345)	HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGB5	56101	genome.wustl.edu	37	5	140779288	140779288	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018925.2	+1	reviewed	p.D532N	1.000	22	0%	40	50%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA9	56107	genome.wustl.edu	37	5	140783438	140783438	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018921.2	+1	reviewed	p.L307	0.034	126	0%	160	49.4%	1	100%	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGB6	56100	genome.wustl.edu	37	5	140788217	140788217	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018926.2	+1	reviewed	p.T150A	0.000	152	0%	209	45.5%	0	-	benign(0)	tolerated(1)	-	HMMPfam_Cadherin,superfamily_Cadherin-like
PCDHGA11	56105	genome.wustl.edu	37	5	140800828	140800828	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018914.2	+1	reviewed	p.R12W	0.000	13	0%	17	52.9%	2	100%	unknown(0)	tolerated(0.05)	-	NULL
PCDHGA11	56105	genome.wustl.edu	37	5	140802306	140802306	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018914.2	+1	reviewed	p.S504	0.991	139	0%	175	46.3%	2	100%	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGC4	56098	genome.wustl.edu	37	5	140866238	140866238	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018928.2	+1	reviewed	p.R500*	0.899	88	0%	120	49.2%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGC4	56098	genome.wustl.edu	37	5	140866769	140866769	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018928.2	+1	reviewed	p.R677*	0.988	164	0.6%	224	45.1%	0	-	-	-	-	NULL
HDAC3	8841	genome.wustl.edu	37	5	141014438	141014438	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003883.3	-1	reviewed	p.S74N	1.000	137	0%	152	29.6%	67	53.7%	benign(0.23)	tolerated(0.18)	neutral(0.079)	HMMPfam_Hist_deacetyl,superfamily_Arginase/deacetylase
ARAP3	64411	genome.wustl.edu	37	5	141059793	141059793	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_022481.5	-1	reviewed	p.P87	0.001	103	0%	118	39.8%	10	20%	-	-	-	NULL
ARHGAP26	23092	genome.wustl.edu	37	5	142421405	142421405	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015071.4	+1	reviewed	p.R412Q	1.000	212	0.5%	258	20.9%	38	34.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
KCTD16	57528	genome.wustl.edu	37	5	143586926	143586926	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020768.3	+1	validated	p.R217*	1.000	125	0%	105	52.4%	0	-	-	-	-	NULL
LARS	51520	genome.wustl.edu	37	5	145503616	145503616	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020117.9	-1	reviewed	p.D1009Y	1.000	321	0%	376	42%	25	40%	possibly_damaging(0.949)	tolerated(0.05)	deleterious(0.738)	NULL
LARS	51520	genome.wustl.edu	37	5	145529246	145529246	+	Missense_Mutation	SNP	C	C	T	rs192961740	by1000genomes	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020117.9	-1	reviewed	p.G481E	0.939	397	0%	434	37.8%	20	50%	benign(0.003)	tolerated(1)	-	superfamily_ValRS/IleRS/LeuRS editing domain,superfamily_Nucleotidylyl transferase
RBM27	54439	genome.wustl.edu	37	5	145609354	145609354	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018989.1	+1	validated	p.R157H	1.000	233	0.4%	201	47.8%	10	50%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
RBM27	54439	genome.wustl.edu	37	5	145641173	145641173	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018989.1	+1	validated	p.R665Q	1.000	131	0%	174	44.8%	26	26.9%	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	HMMSmart_RRM,superfamily_SSF54928
POU4F3	5459	genome.wustl.edu	37	5	145719977	145719977	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002700.2	+1	reviewed	p.Q329H	1.000	17	0%	29	62.1%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like,PatternScan_HOMEOBOX_1
TCERG1	10915	genome.wustl.edu	37	5	145883447	145883447	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006706.3	+1	reviewed	p.R870*	1.000	216	0%	253	42.7%	7	14.2%	-	-	-	NULL
TCERG1	10915	genome.wustl.edu	37	5	145888796	145888796	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006706.3	+1	reviewed	p.F1028C	1.000	179	0%	259	45.6%	7	42.8%	unknown(0)	tolerated(0.15)	-	HMMPfam_FF,HMMSmart_SM00441
PPP2R2B	5521	genome.wustl.edu	37	5	145979966	145979966	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_181676.2	-1	reviewed	p.S286L	1.000	258	0%	366	45.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00320,superfamily_WD40 repeat-like
SPINK5	11005	genome.wustl.edu	37	5	147499934	147499934	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001127698.1	+1	reviewed	p.E840*	0.001	908	0%	1070	23.5%	5	20%	-	-	-	NULL
SPINK7	84651	genome.wustl.edu	37	5	147692083	147692083	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032566.2	+1	validated	p.V13L	0.001	244	0.4%	265	46.4%	2	0%	benign(0)	tolerated(0.64)	neutral(0.003)	NULL
FBXO38	81545	genome.wustl.edu	37	5	147806803	147806803	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_205836.1	+1	validated	p.R649Q	1.000	77	0%	85	38.8%	8	37.5%	possibly_damaging(0.939)	deleterious(0)	deleterious(0.829)	NULL
GRPEL2	134266	genome.wustl.edu	37	5	148730659	148730659	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152407.3	+1	validated	p.E164	1.000	95	0%	146	47.9%	13	46.1%	-	-	-	HMMPfam_GrpE,superfamily_GrpE_head
PDE6A	5145	genome.wustl.edu	37	5	149247680	149247680	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000440.2	-1	reviewed	p.K726T	1.000	138	0%	180	17.8%	0	-	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	HMMPfam_PDEase_I,HMMSmart_HDc,superfamily_SSF109604
CAMK2A	815	genome.wustl.edu	37	5	149631587	149631587	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015981.3	-1	reviewed	p.R186W	1.000	95	0%	129	43.4%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
CD74	972	genome.wustl.edu	37	5	149784247	149784247	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001025159.1	-1	validated	p.P207	0.001	83	0%	94	50%	701	22.8%	-	-	-	superfamily_Thyroglobulin type-1 domain,HMMPfam_MHCassoc_trimer,superfamily_Class II MHC-associated invariant chain ectoplasmic trimerization domain
ZNF300	91975	genome.wustl.edu	37	5	150275179	150275179	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_052860.2	-1	reviewed	p.R541Q	0.999	141	0%	235	45.1%	0	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ANXA6	309	genome.wustl.edu	37	5	150514015	150514015	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001155.3	-1	reviewed	p.S173	0.968	298	0%	407	38.6%	102	26.4%	-	-	-	superfamily_Annexin
SLC36A3	285641	genome.wustl.edu	37	5	150666867	150666867	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001145017.1	-1	validated	p.S257	0.000	192	0%	285	47.4%	0	-	-	-	-	HMMPfam_Aa_trans
SLC36A1	206358	genome.wustl.edu	37	5	150858926	150858926	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_078483.2	+1	reviewed	p.F345L	1.000	227	0%	298	44%	14	50%	benign(0.019)	tolerated(1)	neutral(0.001)	HMMPfam_Aa_trans
FAT2	2196	genome.wustl.edu	37	5	150914015	150914015	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001447.2	-1	reviewed	p.V3128M	0.012	47	0%	69	42%	13	92.3%	possibly_damaging(0.874)	tolerated(0.12)	deleterious(0.600)	HMMPfam_Cadherin,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
FAT2	2196	genome.wustl.edu	37	5	150920325	150920325	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001447.2	-1	reviewed	e10-1	1.000	82	0%	126	37.3%	0	-	-	-	-	-
FAT2	2196	genome.wustl.edu	37	5	150947406	150947406	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001447.2	-1	reviewed	p.E363K	1.000	137	0%	168	36.9%	2	100%	benign(0.188)	tolerated(0.21)	neutral(0.061)	superfamily_Cadherin-like
FAT2	2196	genome.wustl.edu	37	5	150948037	150948037	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001447.2	-1	reviewed	p.S152	0.004	112	0%	100	48%	1	100%	-	-	-	superfamily_Cadherin-like
SPARC	6678	genome.wustl.edu	37	5	151046053	151046053	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003118.2	-1	provisional	p.E201D	1.000	63	0%	95	48.4%	674	0%	possibly_damaging(0.761)	tolerated(0.3)	neutral(0.310)	HMMPfam_SPARC_Ca_bdg,superfamily_EF-hand
GRIA1	2890	genome.wustl.edu	37	5	153026600	153026600	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000827.3	+1	reviewed	p.P111	0.113	206	0%	305	43.6%	0	-	-	-	-	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
MFAP3	4238	genome.wustl.edu	37	5	153429120	153429120	+	RNA	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NR_024152.1	+1	validated	NULL	0.527	19	0%	16	43.8%	0	-	-	-	-	-
MFAP3	4238	genome.wustl.edu	37	5	153429391	153429391	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005927.4	+1	validated	p.R37C	0.004	198	0%	271	43.5%	7	100%	benign(0.054)	deleterious(0.01)	neutral(0.409)	NULL
GALNT10	55568	genome.wustl.edu	37	5	153765888	153765888	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_198321.3	+1	reviewed	p.A318	0.998	135	0%	174	44.3%	30	63.3%	-	-	-	HMMPfam_Glycos_transf_2,superfamily_Nucleotide-diphospho-sugar transferases
C5orf4	10826	genome.wustl.edu	37	5	154214274	154214274	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032385.3	-1	validated	p.F52C	1.000	128	0%	126	46.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
HAVCR1	26762	genome.wustl.edu	37	5	156464342	156464342	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001099414.1	-1	reviewed	p.A290T	0.000	180	0%	232	46.1%	0	-	benign(0.269)	deleterious(0.05)	neutral(0.374)	NULL
ITK	3702	genome.wustl.edu	37	5	156641222	156641222	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005546.3	+1	reviewed	p.L116	0.989	144	0%	205	47.8%	0	-	-	-	-	HMMSmart_SM00107,superfamily_PH domain-like
CYFIP2	26999	genome.wustl.edu	37	5	156757852	156757852	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001037332.2	+1	validated	p.H753	0.787	207	0%	266	43.6%	21	33.3%	-	-	-	HMMPfam_FragX_IP
SOX30	11063	genome.wustl.edu	37	5	157065382	157065382	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_178424.1	-1	reviewed	p.P579Q	0.828	148	0%	230	46.5%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
CLINT1	9685	genome.wustl.edu	37	5	157236642	157236642	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014666.2	-1	validated	p.R230I	1.000	185	0%	179	43.6%	30	46.6%	probably_damaging(0.986)	tolerated(0.1)	deleterious(0.721)	NULL
EBF1	1879	genome.wustl.edu	37	5	158135111	158135111	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024007.3	-1	validated	p.I540	1.000	249	0%	389	45.8%	8	0%	-	-	-	NULL
IL12B	3593	genome.wustl.edu	37	5	158753731	158753731	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002187.2	-1	reviewed	p.L20	0.259	175	0%	197	43.1%	0	-	-	-	-	NULL
PWWP2A	114825	genome.wustl.edu	37	5	159519671	159519671	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001130864.1	-1	validated	p.K662N	1.000	72	0%	94	10.6%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PWWP,HMMSmart_SM00293,superfamily_Tudor/PWWP/MBT
C1QTNF2	114898	genome.wustl.edu	37	5	159781949	159781949	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_031908.4	-1	validated	p.R69C	0.762	53	0%	78	28.2%	3	0%	unknown(0)	deleterious(0)	-	NULL
ATP10B	23120	genome.wustl.edu	37	5	160034003	160034003	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_025153.2	-1	validated	p.R977C	0.000	147	0%	174	38.5%	0	-	benign(0.001)	tolerated(0.09)	neutral(0.296)	superfamily_HAD-like
GABRA6	2559	genome.wustl.edu	37	5	161116062	161116062	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000811.2	+1	reviewed	p.I111	0.999	87	0%	148	12.8%	0	-	-	-	-	HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like
GABRA6	2559	genome.wustl.edu	37	5	161119083	161119083	+	Silent	SNP	C	C	T	rs148840190		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000811.2	+1	reviewed	p.F321	0.981	220	0%	309	48.2%	0	-	-	-	-	HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore
GABRA1	2554	genome.wustl.edu	37	5	161300227	161300227	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000806.5	+1	reviewed	p.K120N	1.000	99	0%	114	47.4%	0	-	benign(0.096)	deleterious(0.03)	neutral(0.371)	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD
GABRA1	2554	genome.wustl.edu	37	5	161309605	161309605	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000806.5	+1	reviewed	p.E201*	1.000	196	0%	286	47.6%	0	-	-	-	-	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD
GABRG2	2566	genome.wustl.edu	37	5	161530983	161530983	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_198903.2	+1	reviewed	p.F280	1.000	284	0%	350	42%	0	-	-	-	-	HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like
ODZ2	57451	genome.wustl.edu	37	5	166712059	166712059	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001122679.1	+1	inferred	p.P73S	1.000	43	0%	83	34.9%	0	-	benign(0)	tolerated(1)	-	HMMPfam_Ten_N
ODZ2	57451	genome.wustl.edu	37	5	167643874	167643874	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001122679.1	+1	inferred	p.D1385Y	1.000	75	0%	103	37.9%	0	-	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	superfamily_Concanavalin A-like lectins/glucanases,superfamily_NHL repeat
ODZ2	57451	genome.wustl.edu	37	5	167655130	167655130	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001122679.1	+1	inferred	p.L1830I	1.000	47	0%	77	40.3%	0	-	probably_damaging(1)	tolerated(0.25)	deleterious(0.537)	superfamily_Concanavalin A-like lectins/glucanases
ODZ2	57451	genome.wustl.edu	37	5	167674040	167674040	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001122679.1	+1	inferred	p.V2023	0.998	41	0%	68	48.5%	0	-	-	-	-	HMMPfam_RHS_repeat,superfamily_Concanavalin A-like lectins/glucanases
RARS	5917	genome.wustl.edu	37	5	167943842	167943842	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002887.3	+1	reviewed	p.K504N	0.998	187	0%	229	38%	221	49.3%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_tRNA-synt_1d,superfamily_Nucleotidylyl transferase
MIR218-2	407001	genome.wustl.edu	37	5	168195225	168195225	+	RNA	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000385006	-1	known	NULL	1.000	67	0%	80	37.5%	0	-	-	-	-	-
SLIT3	6586	genome.wustl.edu	37	5	168678418	168678418	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003062.2	-1	validated	p.F81	0.921	315	0%	377	19.6%	5	0%	-	-	-	HMMSmart_SM00369,superfamily_L domain-like
CCDC99	54908	genome.wustl.edu	37	5	169015564	169015564	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017785.4	+1	validated	p.M48I	0.996	129	0%	182	44%	0	-	benign(0.081)	tolerated(0.05)	neutral(0.351)	NULL
DOCK2	1794	genome.wustl.edu	37	5	169483771	169483771	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004946.2	+1	validated	p.A1460D	0.997	109	0%	129	43.4%	1	0%	possibly_damaging(0.95)	deleterious(0.03)	deleterious(0.758)	NULL
NPM1	4869	genome.wustl.edu	37	5	170832405	170832405	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002520.6	+1	reviewed	p.K257E	1.000	31	0%	40	40%	147	50.3%	benign(0.086)	tolerated(0.17)	neutral(0.066)	NULL
UBTD2	92181	genome.wustl.edu	37	5	171638918	171638918	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152277.2	-1	validated	p.F207	1.000	87	0%	90	37.8%	17	64.7%	-	-	-	HMMPfam_ubiquitin,HMMSmart_UBQ,superfamily_SSF54236
UBTD2	92181	genome.wustl.edu	37	5	171639194	171639194	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152277.2	-1	validated	p.R115S	0.950	113	0%	163	43.6%	28	57.1%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
RPL26L1	51121	genome.wustl.edu	37	5	172396497	172396497	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016093.2	+1	reviewed	p.E131*	1.000	529	0%	548	29.9%	19	36.8%	-	-	-	NULL
CREBRF	153222	genome.wustl.edu	37	5	172518007	172518007	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_153607.2	+1	validated	p.E275D	0.965	75	0%	98	50%	0	-	benign(0.404)	tolerated(0.44)	neutral(0.143)	NULL
NKX2-5	1482	genome.wustl.edu	37	5	172659671	172659671	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004387.3	-1	reviewed	p.F292	1.000	16	0%	22	31.8%	0	-	-	-	-	NULL
ENSG00000251133	0	genome.wustl.edu	37	5	175716588	175716588	+	RNA	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000505928	-1	novel	NULL	0.000	95	0%	103	38.8%	0	-	-	-	-	-
CLTB	1212	genome.wustl.edu	37	5	175819939	175819939	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000310418	-1	known	p.E176K	1.000	203	1%	256	42.2%	326	48.4%	possibly_damaging(0.946)	tolerated(0.11)	deleterious(0.661)	HMMPfam_Clathrin_lg_ch
CLTB	1212	genome.wustl.edu	37	5	175843355	175843355	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000310418	-1	known	p.D4Y	1.000	2	0.000	11	0.909	37	35.1%	possibly_damaging(0.578)	deleterious(0)	deleterious(0.643)	HMMPfam_Clathrin_lg_ch
CDHR2	54825	genome.wustl.edu	37	5	176005393	176005393	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017675.4	+1	reviewed	p.V534	0.016	45	0%	84	17.9%	1	0%	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
NSD1	64324	genome.wustl.edu	37	5	176631233	176631233	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_022455.4	+1	reviewed	p.F392	0.999	243	0%	294	42.5%	8	50%	-	-	-	HMMPfam_PWWP,superfamily_Tudor/PWWP/MBT
NSD1	64324	genome.wustl.edu	37	5	176721424	176721424	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_022455.4	+1	reviewed	p.R2352I	0.997	29	0%	51	43.1%	18	44.4%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
DDX41	51428	genome.wustl.edu	37	5	176940722	176940722	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016222.2	-1	reviewed	p.F354	0.457	22	0%	41	48.8%	146	41.7%	-	-	-	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
COL23A1	91522	genome.wustl.edu	37	5	177689224	177689224	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_173465.3	-1	validated	p.G223	0.012	120	0%	180	37.2%	6	16.6%	-	-	-	HMMPfam_Collagen
CLK4	57396	genome.wustl.edu	37	5	178044425	178044425	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020666.2	-1	reviewed	p.R132Q	1.000	252	0%	370	41.1%	12	16.6%	probably_damaging(0.999)	tolerated(0.08)	deleterious(0.790)	NULL
ZNF354B	117608	genome.wustl.edu	37	5	178293318	178293318	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_058230.2	+1	validated	p.R36I	0.877	350	0%	420	43.8%	7	28.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
ZFP2	80108	genome.wustl.edu	37	5	178358511	178358511	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_030613.2	+1	provisional	p.S66N	0.001	158	0%	200	39%	1	100%	benign(0.004)	tolerated(0.09)	neutral(0.296)	NULL
ZFP2	80108	genome.wustl.edu	37	5	178358667	178358667	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_030613.2	+1	provisional	p.L118R	0.998	96	0%	120	45.8%	4	75%	benign(0.005)	tolerated(0.23)	neutral(0.042)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF454	285676	genome.wustl.edu	37	5	178392532	178392532	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_182594.2	+1	validated	p.R376I	1.000	77	0%	139	47.5%	0	-	possibly_damaging(0.904)	deleterious(0)	deleterious(0.803)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF879	345462	genome.wustl.edu	37	5	178454500	178454500	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001136116.1	+1	provisional	p.A20	0.977	285	0%	351	35.6%	10	50%	possibly_damaging(0.737)	-	-	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF879	345462	genome.wustl.edu	37	5	178459608	178459608	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001136116.1	+1	provisional	p.S220N	0.534	102	0%	99	52.5%	0	-	probably_damaging(0.965)	tolerated(0.17)	neutral(0.466)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF879	345462	genome.wustl.edu	37	5	178460292	178460292	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001136116.1	+1	provisional	p.R448I	0.996	119	0%	139	53.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF354C	30832	genome.wustl.edu	37	5	178505879	178505879	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014594.1	+1	provisional	p.S149L	0.000	165	0%	192	49%	0	-	benign(0.304)	tolerated(0.25)	neutral(0.132)	NULL
RUFY1	80230	genome.wustl.edu	37	5	178994560	178994560	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_025158.3	+1	validated	p.L234S	0.888	258	0%	301	39.9%	12	41.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RUN,HMMSmart_SM00593
HNRNPH1	3187	genome.wustl.edu	37	5	179045265	179045265	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000510678	-1	known	p.E153*	0.999	185	0%	242	34.3%	303	42.5%	-	-	-	NULL
CANX	821	genome.wustl.edu	37	5	179151663	179151663	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001024649.1	+1	reviewed	p.Q508H	1.000	251	0%	314	48.4%	211	45.9%	benign(0.004)	tolerated(0.11)	neutral(0.272)	NULL
TBC1D9B	23061	genome.wustl.edu	37	5	179315191	179315191	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_198868.2	-1	validated	p.R389K	0.989	212	0%	295	42%	89	38.2%	benign(0.002)	tolerated(0.76)	neutral(0.001)	NULL
GFPT2	9945	genome.wustl.edu	37	5	179728595	179728595	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005110.2	-1	provisional	p.R673I	1.000	216	0%	280	43.9%	11	9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF53697
FLT4	2324	genome.wustl.edu	37	5	180036913	180036913	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_182925.4	-1	reviewed	p.G1267C	0.999	77	0%	100	48%	8	0%	benign(0.001)	tolerated(0.07)	neutral(0.319)	NULL
WRNIP1	56897	genome.wustl.edu	37	6	2779674	2779674	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020135.2	+1	reviewed	p.E478D	1.000	101	0%	190	51.1%	85	44.7%	possibly_damaging(0.861)	tolerated(0.46)	neutral(0.345)	superfamily_P-loop containing nucleoside triphosphate hydrolases
SERPINB9	5272	genome.wustl.edu	37	6	2890770	2890770	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004155.4	-1	validated	p.A253D	0.807	103	0%	99	40.4%	3	0%	benign(0.017)	tolerated(0.19)	neutral(0.050)	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
RIPK1	8737	genome.wustl.edu	37	6	3111190	3111190	+	Splice_Site	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003804.3	+1	validated	e9+1	1.000	135	0%	162	46.9%	3	66.6%	-	-	-	-
BPHL	670	genome.wustl.edu	37	6	3127583	3127583	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004332.2	+1	reviewed	p.R107C	0.823	216	0%	302	18.2%	11	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Abhydrolase_1,superfamily_alpha/beta-Hydrolases
PXDC1	221749	genome.wustl.edu	37	6	3737393	3737393	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_183373.3	-1	validated	p.R129I	1.000	273	0%	337	41.2%	2	0%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	superfamily_PX
FAM50B	26240	genome.wustl.edu	37	6	3850774	3850774	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012135.1	+1	provisional	p.I243	0.900	14	0%	27	40.7%	44	93.1%	-	-	-	HMMPfam_XAP5
CDYL	9425	genome.wustl.edu	37	6	4716011	4716011	+	RNA	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NR_026590.1	+1	reviewed	NULL	0.500	104	0%	117	53%	0	-	-	-	-	-
RREB1	6239	genome.wustl.edu	37	6	7247187	7247187	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001003699.3	+1	reviewed	p.E1502K	0.002	5	0.000	18	0.500	1	0%	benign(0.014)	tolerated(0.23)	neutral(0.042)	NULL
CAGE1	285782	genome.wustl.edu	37	6	7374029	7374029	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_205864.2	-1	validated	p.Q205	0.687	340	0.3%	390	45.4%	0	-	-	-	-	NULL
RIOK1	83732	genome.wustl.edu	37	6	7405221	7405221	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_031480.2	+1	reviewed	p.E355K	1.000	127	0%	193	45.1%	43	32.5%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	HMMSmart_SM00090,superfamily_Protein kinase-like (PK-like),HMMPfam_RIO1
RIOK1	83732	genome.wustl.edu	37	6	7417599	7417599	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_031480.2	+1	reviewed	p.E544D	1.000	155	0%	157	47.8%	6	16.6%	probably_damaging(0.966)	deleterious(0.01)	deleterious(0.814)	NULL
DSP	1832	genome.wustl.edu	37	6	7579645	7579645	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004415.2	+1	reviewed	p.A1074	0.001	112	0%	141	24.8%	19	21%	-	-	-	NULL
MUTED	63915	genome.wustl.edu	37	6	8062841	8062841	+	Nonsense_Mutation	SNP	C	C	A	rs9378517		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_201280.1	-1	reviewed	p.E41*	1.000	139	0%	141	34%	0	-	-	-	-	NULL
TFAP2A	7020	genome.wustl.edu	37	6	10400775	10400775	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003220.2	-1	reviewed	p.E311K	1.000	157	0%	191	44%	49	51%	possibly_damaging(0.909)	deleterious(0)	deleterious(0.806)	HMMPfam_TF_AP-2
GCNT2	2651	genome.wustl.edu	37	6	10529467	10529467	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_145649.4	+1	reviewed	p.G108A	0.735	119	0%	149	42.3%	13	53.8%	benign(0)	tolerated(0.44)	neutral(0.013)	HMMPfam_Branch
PAK1IP1	55003	genome.wustl.edu	37	6	10709536	10709536	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017906.2	+1	validated	p.R344W	0.005	261	0%	270	38.1%	22	40.9%	benign(0.081)	deleterious(0.02)	neutral(0.389)	superfamily_WD40_like
PAK1IP1	55003	genome.wustl.edu	37	6	10709637	10709637	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017906.2	+1	validated	p.E377	0.000	131	0%	150	32.7%	20	10%	-	-	-	superfamily_WD40_like
ERVFRD-1	405754	genome.wustl.edu	37	6	11105354	11105354	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_207582.2	-1	validated	p.E64*	0.603	204	0%	263	47.1%	0	-	-	-	-	NULL
PHACTR1	221692	genome.wustl.edu	37	6	13206092	13206092	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_030948.1	+1	validated	p.S237L	1.000	67	0%	77	54.5%	0	-	probably_damaging(0.98)	deleterious(0.01)	deleterious(0.830)	NULL
NOL7	51406	genome.wustl.edu	37	6	13616699	13616699	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016167.3	+1	provisional	p.R111I	1.000	157	0%	165	43%	14	35.7%	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	NULL
JARID2	3720	genome.wustl.edu	37	6	15507482	15507482	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004973.2	+1	reviewed	p.S886L	1.000	99	0%	153	45.1%	56	44.6%	probably_damaging(0.995)	deleterious(0.05)	deleterious(0.803)	HMMSmart_SM00558
CAP2	10486	genome.wustl.edu	37	6	17463261	17463261	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006366.2	+1	reviewed	p.R86Q	1.000	189	0.5%	247	45.7%	10	50%	probably_damaging(0.99)	tolerated(0.2)	deleterious(0.490)	HMMPfam_CAP_N,superfamily_N-terminal domain of adenylylcyclase associated protein CAP
CAP2	10486	genome.wustl.edu	37	6	17543321	17543321	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006366.2	+1	reviewed	p.D386Y	1.000	387	0%	458	46.3%	8	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00673,HMMPfam_CAP_C,superfamily_C-terminal domain of adenylylcyclase associated protein
NUP153	9972	genome.wustl.edu	37	6	17637461	17637461	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005124.2	-1	reviewed	p.S796Y	1.000	146	0%	197	26.9%	10	0%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMPfam_zf-RanBP,HMMSmart_ZnF_RBZ
NHLRC1	378884	genome.wustl.edu	37	6	18122093	18122093	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_198586.2	-1	reviewed	p.G249W	0.934	28	0%	30	43.3%	5	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF101898
NHLRC1	378884	genome.wustl.edu	37	6	18122475	18122475	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_198586.2	-1	reviewed	p.G121	0.127	12	0%	24	54.2%	2	100%	-	-	-	NULL
KDM1B	221656	genome.wustl.edu	37	6	18171678	18171678	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_153042.3	+1	validated	p.R168*	1.000	510	0%	636	36.9%	9	0%	-	-	-	HMMPfam_zf-CW
MBOAT1	154141	genome.wustl.edu	37	6	20128943	20128943	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001080480.1	-1	provisional	p.R173*	0.788	364	0%	428	28.7%	15	20%	-	-	-	HMMPfam_MBOAT
E2F3	1871	genome.wustl.edu	37	6	20490607	20490607	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001949.3	+1	reviewed	p.F448	0.689	104	0%	127	50.4%	4	50%	-	-	-	NULL
PRL	5617	genome.wustl.edu	37	6	22294638	22294638	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000948.4	-1	validated	p.F68	0.997	116	0%	168	39.3%	0	-	-	-	-	HMMPfam_Hormone_1,superfamily_4-helical cytokines
PRL	5617	genome.wustl.edu	37	6	22294643	22294643	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000948.4	-1	validated	p.E67K	0.968	126	0%	174	49.4%	0	-	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMPfam_Hormone_1,superfamily_4-helical cytokines
GPLD1	2822	genome.wustl.edu	37	6	24447103	24447103	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001503.2	-1	reviewed	p.L595	0.997	106	0%	136	39.7%	0	-	-	-	-	HMMSmart_SM00191,superfamily_Integrin alpha N-terminal domain
GPLD1	2822	genome.wustl.edu	37	6	24450070	24450070	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001503.2	-1	reviewed	p.P465S	0.485	54	0%	68	45.6%	1	0%	benign(0.001)	tolerated(0.84)	neutral(0.001)	HMMPfam_FG-GAP,HMMSmart_SM00191,superfamily_Integrin alpha N-terminal domain
KIAA0319	9856	genome.wustl.edu	37	6	24547493	24547493	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014809.3	-1	reviewed	p.I1040S	0.999	321	0%	405	43%	0	-	probably_damaging(0.975)	deleterious(0)	deleterious(0.861)	NULL
TDP2	51567	genome.wustl.edu	37	6	24658813	24658813	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016614.2	-1	reviewed	p.R134Q	1.000	305	0.3%	380	45.5%	10	60%	benign(0.281)	tolerated(0.07)	neutral(0.405)	HMMPfam_Exo_endo_phos,superfamily_Exo_endo_phos
FAM65B	9750	genome.wustl.edu	37	6	24850070	24850070	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014722.2	-1	validated	p.D303Y	1.000	98	0%	124	41.9%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
FAM65B	9750	genome.wustl.edu	37	6	24873875	24873875	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014722.2	-1	validated	p.L85R	0.998	442	0%	512	43.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LRRC16A	55604	genome.wustl.edu	37	6	25538132	25538132	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017640.5	+1	validated	p.R706Q	1.000	217	0%	276	39.9%	8	37.5%	probably_damaging(0.975)	tolerated(0.33)	neutral(0.441)	NULL
SLC17A2	10246	genome.wustl.edu	37	6	25924040	25924040	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005835.2	-1	validated	p.A41	0.669	179	0%	298	46.3%	0	-	-	-	-	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
TRIM38	10475	genome.wustl.edu	37	6	25983666	25983666	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006355.2	+1	reviewed	p.W383C	1.000	233	0%	250	19.6%	9	11.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SPRY,HMMSmart_SPRY
BTN2A1	11120	genome.wustl.edu	37	6	26459970	26459970	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007049.2	+1	reviewed	p.I115S	0.875	153	0%	201	42.3%	36	41.6%	benign(0.002)	deleterious(0)	neutral(0.445)	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
PRSS16	10279	genome.wustl.edu	37	6	27215728	27215728	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005865.3	+1	reviewed	p.G46	0.000	46	0%	57	26.3%	0	-	-	-	-	NULL
HIST1H2AM	8336	genome.wustl.edu	37	6	27860662	27860662	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003514.2	-1	reviewed	p.R89H	1.000	241	0%	323	44.3%	6	50%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_SM00414,HMMPfam_Histone,superfamily_Histone-fold
NKAPL	222698	genome.wustl.edu	37	6	28227418	28227418	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001007531.1	+1	provisional	p.S90L	0.000	47	2.1%	62	37.1%	0	-	unknown(0)	tolerated(0.41)	-	NULL
NKAPL	222698	genome.wustl.edu	37	6	28228244	28228244	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001007531.1	+1	provisional	p.E365D	1.000	291	0%	442	45.7%	0	-	probably_damaging(0.996)	tolerated(0.07)	deleterious(0.780)	HMMPfam_DUF926
ZKSCAN3	80317	genome.wustl.edu	37	6	28333471	28333471	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024493.2	+1	validated	p.Y342	0.044	183	0%	252	45.2%	8	25%	-	-	-	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667
GPX6	257202	genome.wustl.edu	37	6	28472081	28472081	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_182701.1	-1	reviewed	p.F218L	0.000	293	0%	337	14.2%	0	-	benign(0.003)	tolerated(0.46)	neutral(0.012)	NULL
SCAND3	114821	genome.wustl.edu	37	6	28540701	28540701	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_052923.1	-1	provisional	p.E989*	0.984	156	0%	202	42.6%	0	-	-	-	-	NULL
SCAND3	114821	genome.wustl.edu	37	6	28543486	28543486	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_052923.1	-1	provisional	p.A332	1.000	395	0%	563	42.1%	0	-	-	-	-	NULL
MDC1	9656	genome.wustl.edu	37	6	30671690	30671690	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014641.2	-1	reviewed	p.R1757I	0.825	104	0%	115	42.6%	13	53.8%	probably_damaging(0.959)	deleterious(0.02)	deleterious(0.786)	NULL
DDR1	780	genome.wustl.edu	37	6	30864593	30864593	+	Missense_Mutation	SNP	G	G	A	rs140296720		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_013994.2	+1	reviewed	p.R607Q	0.995	55	0%	66	43.9%	98	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Protein kinase-like (PK-like)
MUC21	394263	genome.wustl.edu	37	6	30955424	30955424	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001010909.2	+1	validated	p.A491V	0.000	352	0%	476	45.4%	0	-	benign(0.176)	deleterious(0)	neutral(0.461)	NULL
C6orf25	80739	genome.wustl.edu	37	6	31692658	31692658	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000480039	+1	known	p.L220I	0.007	48	0%	44	59.1%	0	-	unknown(0)	-	-	NULL
MSH5	4439	genome.wustl.edu	37	6	31713026	31713026	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_025259.5	+1	reviewed	p.I249M	1.000	201	0%	250	48.8%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MutS_III
TNXB	7148	genome.wustl.edu	37	6	32037363	32037363	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_019105.6	-1	reviewed	p.R1852C	0.118	20	0%	22	45.5%	1	0%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
RING1	6015	genome.wustl.edu	37	6	33177558	33177558	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002931.3	+1	reviewed	p.R78	0.979	17	0%	22	54.5%	135	42.9%	-	-	-	HMMSmart_SM00184,HMMPfam_zf-C3HC4,superfamily_RING/U-box
TAPBP	6892	genome.wustl.edu	37	6	33272136	33272136	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003190.4	-1	reviewed	p.R383Q	0.885	17	0%	34	38.2%	239	33%	probably_damaging(1)	tolerated(0.35)	deleterious(0.520)	HMMPfam_C1-set,superfamily_SSF48726
DAXX	1616	genome.wustl.edu	37	6	33290653	33290653	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001141970.1	-1	reviewed	p.E13D	1.000	62	0%	65	46.2%	14	42.8%	-	-	-	NULL
KIFC1	3833	genome.wustl.edu	37	6	33371102	33371102	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002263.3	+1	validated	p.S88T	0.996	149	0%	179	48%	25	36%	benign(0.242)	tolerated(0.06)	neutral(0.347)	NULL
ZBTB9	221504	genome.wustl.edu	37	6	33423747	33423747	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152735.3	+1	validated	p.F290	0.558	58	0%	90	45.6%	11	54.5%	-	-	-	NULL
ITPR3	3710	genome.wustl.edu	37	6	33662782	33662782	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002224.2	+1	validated	p.R2623W	1.000	65	0%	99	11.1%	156	5.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
UHRF1BP1	54887	genome.wustl.edu	37	6	34826258	34826258	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017754.3	+1	validated	p.E709*	1.000	163	0%	189	14.8%	0	-	-	-	-	NULL
TCP11	6954	genome.wustl.edu	37	6	35096850	35096850	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001093728.1	-1	validated	p.E129*	0.987	167	0%	208	50.5%	0	-	-	-	-	HMMPfam_Tcp11
SCUBE3	222663	genome.wustl.edu	37	6	35209655	35209655	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152753.2	+1	provisional	p.N462S	0.000	40	0%	48	41.7%	17	23.5%	benign(0)	tolerated(1)	-	NULL
TEAD3	7005	genome.wustl.edu	37	6	35442860	35442860	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000402886	-1	known	p.H363	0.929	93	0%	97	53.6%	57	45.6%	-	-	-	HMMPfam_TEA
FKBP5	2289	genome.wustl.edu	37	6	35587931	35587931	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001145775.1	-1	reviewed	p.S124L	1.000	131	0%	165	47.3%	0	-	possibly_damaging(0.661)	deleterious(0.01)	deleterious(0.639)	HMMPfam_FKBP_C,superfamily_FKBP-like
CLPSL1	340204	genome.wustl.edu	37	6	35755774	35755774	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001010886.3	+1	predicted	p.K118T	0.000	553	0%	583	20.1%	3	0%	possibly_damaging(0.952)	deleterious(0)	deleterious(0.840)	NULL
SRPK1	6732	genome.wustl.edu	37	6	35854589	35854589	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003137.3	-1	reviewed	e6-1	1.000	295	0%	346	39.3%	1	0%	-	-	-	-
SLC26A8	116369	genome.wustl.edu	37	6	35945088	35945088	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_052961.2	-1	reviewed	p.K356Q	0.000	419	0%	458	44.5%	0	-	benign(0.001)	tolerated(0.51)	neutral(0.009)	HMMPfam_Sulfate_transp
SLC26A8	116369	genome.wustl.edu	37	6	35967801	35967801	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_052961.2	-1	reviewed	p.V138A	0.097	182	0%	215	10.7%	1	0%	possibly_damaging(0.442)	tolerated(0.22)	neutral(0.186)	NULL
SLC26A8	116369	genome.wustl.edu	37	6	35980079	35980079	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_052961.2	-1	reviewed	p.R87*	1.000	217	0%	290	47.2%	0	-	-	-	-	NULL
ETV7	51513	genome.wustl.edu	37	6	36353349	36353349	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016135.2	-1	provisional	p.L35P	0.002	153	0%	162	40.1%	1	0%	benign(0.049)	tolerated(0.17)	neutral(0.062)	HMMSmart_SM00251,superfamily_SAM/Pointed domain
PXT1	222659	genome.wustl.edu	37	6	36359630	36359630	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152990.3	-1	validated	p.D25Y	0.004	176	0%	198	40.9%	0	-	benign(0.031)	deleterious(0.02)	neutral(0.385)	NULL
KCTD20	222658	genome.wustl.edu	37	6	36437875	36437875	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_173562.3	+1	provisional	p.M1V	1.000	143	0%	169	43.2%	12	25%	benign(0.382)	deleterious(0)	deleterious(0.567)	NULL
MDGA1	266727	genome.wustl.edu	37	6	37611586	37611586	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000418178	-1	known	p.S155L	0.214	95	0%	100	36%	1	0%	-	-	-	HMMPfam_MAM,HMMSmart_SM00137
MDGA1	266727	genome.wustl.edu	37	6	37614067	37614067	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_153487.3	-1	validated	p.L711I	1.000	68	0%	97	43.3%	1	0%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	superfamily_Fibronectin type III
DNAH8	1769	genome.wustl.edu	37	6	38702259	38702259	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000373278	+1	known	p.R207Q	0.998	173	0%	240	41.7%	0	-	benign(0.011)	tolerated(0.13)	neutral(0.253)	NULL
DNAH8	1769	genome.wustl.edu	37	6	38790731	38790731	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001371.2	+1	validated	p.R997I	0.060	227	0%	261	44.8%	0	-	possibly_damaging(0.804)	deleterious(0)	deleterious(0.747)	NULL
DNAH8	1769	genome.wustl.edu	37	6	38818089	38818089	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001371.2	+1	validated	p.E1537D	1.000	254	0%	323	43.3%	0	-	possibly_damaging(0.523)	tolerated(0.2)	neutral(0.225)	HMMPfam_DHC_N2
DNAH8	1769	genome.wustl.edu	37	6	38905789	38905789	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001371.2	+1	validated	p.R3651Q	0.042	131	0%	177	46.9%	0	-	benign(0.005)	tolerated(0.59)	neutral(0.004)	NULL
KIF6	221458	genome.wustl.edu	37	6	39580978	39580978	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_145027.4	-1	validated	p.R209Q	1.000	234	0%	273	28.2%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
DAAM2	23500	genome.wustl.edu	37	6	39828790	39828790	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015345.2	+1	validated	p.K85N	1.000	187	0%	208	40.9%	1	0%	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	HMMPfam_Drf_GBD
TRERF1	55809	genome.wustl.edu	37	6	42330684	42330684	+	Splice_Site	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000340840	-1	known	e0+1	0.000	60	0%	69	53.6%	0	-	-	-	-	-
UBR2	23304	genome.wustl.edu	37	6	42600362	42600362	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015255.2	+1	reviewed	p.R452*	0.998	160	0%	209	45.5%	2	50%	-	-	-	NULL
PPP2R5D	5528	genome.wustl.edu	37	6	42975704	42975704	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006245.2	+1	reviewed	p.R253Q	1.000	157	0%	220	44.5%	25	36%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_B56
RRP36	88745	genome.wustl.edu	37	6	42996894	42996894	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033112.2	+1	provisional	p.E236D	1.000	105	0%	100	23%	81	22.2%	possibly_damaging(0.931)	tolerated(0.25)	neutral(0.414)	HMMPfam_DUF947
CUL7	9820	genome.wustl.edu	37	6	43006702	43006702	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014780.4	-1	reviewed	p.R1440*	0.000	46	0%	78	47.4%	115	21.7%	-	-	-	HMMPfam_Cullin,superfamily_Cullin_homology
MRPL2	51069	genome.wustl.edu	37	6	43022075	43022075	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015950.3	-1	reviewed	p.K285N	1.000	35	0%	40	20%	68	11.7%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_Transl_SH3_like
MRPL2	51069	genome.wustl.edu	37	6	43023675	43023675	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015950.3	-1	reviewed	p.E197D	1.000	151	0%	160	43.1%	87	57.4%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_Ribosomal_L2_C,superfamily_Transl_SH3_like
KLC4	89953	genome.wustl.edu	37	6	43033372	43033372	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_201523.1	+1	validated	p.G186	0.006	67	0%	74	37.8%	32	37.5%	-	-	-	HMMPfam_Rab5-bind,superfamily_TPR-like
CUL9	23113	genome.wustl.edu	37	6	43152128	43152128	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015089.2	+1	validated	p.R27Q	1.000	138	0%	156	11.5%	12	8.3%	unknown(0)	deleterious(0)	-	NULL
SLC22A7	10864	genome.wustl.edu	37	6	43267774	43267774	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_153320.2	+1	reviewed	p.L266P	1.000	137	0%	189	13.2%	0	-	possibly_damaging(0.637)	tolerated(0.25)	neutral(0.260)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
ZNF318	24149	genome.wustl.edu	37	6	43305315	43305315	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014345.2	-1	validated	p.E2141*	0.953	102	0%	126	45.2%	2	50%	-	-	-	NULL
ABCC10	89845	genome.wustl.edu	37	6	43406475	43406475	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033450.2	+1	reviewed	p.F662C	0.973	110	0%	161	50.9%	18	72.2%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_ABC_tran,HMMSmart_AAA,superfamily_SSF52540
XPO5	57510	genome.wustl.edu	37	6	43495919	43495919	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020750.2	-1	validated	p.I934V	1.000	207	0%	194	50%	2	0%	unknown(0)	deleterious(0)	-	NULL
XPO5	57510	genome.wustl.edu	37	6	43501719	43501719	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020750.2	-1	validated	p.E790*	1.000	347	0%	364	39%	5	40%	-	-	-	superfamily_ARM repeat
XPO5	57510	genome.wustl.edu	37	6	43519110	43519110	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020750.2	-1	validated	p.C551	0.999	244	0%	284	45.1%	10	0%	-	-	-	superfamily_ARM repeat
POLH	5429	genome.wustl.edu	37	6	43578403	43578403	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006502.2	+1	reviewed	p.S396I	1.000	67	0%	93	34.4%	11	9%	possibly_damaging(0.723)	tolerated(0.12)	deleterious(0.523)	HMMPfam_IMS
POLH	5429	genome.wustl.edu	37	6	43581993	43581993	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006502.2	+1	reviewed	p.L614P	0.000	78	0%	122	55.7%	11	45.4%	benign(0.114)	deleterious(0.03)	neutral(0.373)	NULL
GTPBP2	54676	genome.wustl.edu	37	6	43593965	43593965	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_019096.3	-1	validated	p.E132D	1.000	46	0%	81	43.2%	26	42.3%	benign(0.003)	tolerated(0.44)	neutral(0.013)	NULL
RSPH9	221421	genome.wustl.edu	37	6	43618169	43618169	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000417236	+1	known	p.V20I	0.800	250	0%	314	43.6%	0	-	-	-	-	NULL
CAPN11	11131	genome.wustl.edu	37	6	44144711	44144711	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007058.3	+1	reviewed	p.A405T	0.999	60	0%	104	47.1%	0	-	benign(0.069)	deleterious(0)	neutral(0.449)	HMMPfam_Calpain_III,HMMSmart_calpain_III,superfamily_Peptidase_C2
HSP90AB1	3326	genome.wustl.edu	37	6	44220885	44220885	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007355.2	+1	provisional	p.R612Q	1.000	78	0%	118	46.6%	1014	47.1%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMPfam_HSP90,superfamily_HSP90 C-terminal domain (C-terminal part of Pfam 00183)
RUNX2	860	genome.wustl.edu	37	6	45514906	45514906	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001024630.3	+1	reviewed	p.S545L	1.000	115	0%	153	45.1%	1	0%	possibly_damaging(0.527)	deleterious(0)	deleterious(0.623)	HMMPfam_RunxI
RUNX2	860	genome.wustl.edu	37	6	45514984	45514984	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001024630.3	+1	reviewed	p.S571Y	1.000	82	0%	97	39.2%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_RunxI
ENPP4	22875	genome.wustl.edu	37	6	46107981	46107981	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014936.4	+1	validated	p.L221V	1.000	127	0%	197	41.6%	19	52.6%	possibly_damaging(0.854)	tolerated(0.11)	deleterious(0.601)	HMMPfam_Phosphodiest,superfamily_Alkaline_phosphatase_core
ENPP4	22875	genome.wustl.edu	37	6	46108085	46108085	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014936.4	+1	validated	p.I255	0.001	150	0%	225	16.9%	18	5.5%	-	-	-	HMMPfam_Phosphodiest,superfamily_Alkaline_phosphatase_core
RCAN2	10231	genome.wustl.edu	37	6	46214575	46214575	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005822.2	-1	validated	p.S115P	0.986	108	0%	131	38.9%	0	-	benign(0)	tolerated(0.15)	neutral(0.241)	HMMPfam_Calcipressin
CYP39A1	51302	genome.wustl.edu	37	6	46518110	46518110	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016593.3	-1	reviewed	p.R468I	0.997	302	0%	368	17.4%	4	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Cytochrome P450
TDRD6	221400	genome.wustl.edu	37	6	46659051	46659051	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001010870.2	+1	validated	p.V1062	0.815	138	0%	189	41.3%	0	-	-	-	-	HMMSmart_TUDOR,HMMPfam_TUDOR,superfamily_SSF63748
PLA2G7	7941	genome.wustl.edu	37	6	46672297	46672297	+	Nonstop_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005084.3	-1	reviewed	p.*442Y	0.002	168	0%	204	43.1%	0	-	-	-	-	NULL
PLA2G7	7941	genome.wustl.edu	37	6	46679236	46679236	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005084.3	-1	reviewed	p.E220	0.003	456	0%	653	45.3%	0	-	-	-	-	HMMPfam_PAF-AH_p_II,superfamily_SSF53474
MEP1A	4224	genome.wustl.edu	37	6	46777242	46777242	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005588.2	+1	validated	p.E116D	0.465	302	0%	335	15.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Astacin,HMMSmart_ZnMc,superfamily_SSF55486
GPR116	221395	genome.wustl.edu	37	6	46836803	46836803	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001098518.1	-1	validated	p.I480L	1.000	302	0%	356	17.4%	3	0%	possibly_damaging(0.946)	tolerated(1)	neutral(0.390)	HMMSmart_SM00409,superfamily_Immunoglobulin
GPR111	222611	genome.wustl.edu	37	6	47650309	47650309	+	Missense_Mutation	SNP	G	G	A	rs144129468	by1000genomes	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_153839.6	+1	validated	p.D604N	0.000	87	0%	133	41.4%	0	-	benign(0)	tolerated(0.47)	neutral(0.011)	HMMPfam_7tm_2
MUT	4594	genome.wustl.edu	37	6	49426914	49426914	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000255.3	-1	reviewed	p.K89T	1.000	238	0%	314	43%	29	58.6%	benign(0.005)	tolerated(0.07)	neutral(0.319)	HMMPfam_MM_CoA_mutase,superfamily_Cobalamin (vitamin B12)-dependent enzymes
CRISP1	167	genome.wustl.edu	37	6	49808636	49808636	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001131.2	-1	reviewed	p.L170I	0.000	137	0%	164	45.1%	0	-	possibly_damaging(0.439)	deleterious(0.05)	deleterious(0.488)	HMMSmart_SM00198,HMMPfam_SCP,superfamily_PR-1-like,PatternScan_CRISP_2
PKHD1	5314	genome.wustl.edu	37	6	51612726	51612726	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_138694.3	-1	reviewed	p.D3230N	0.724	110	0%	168	48.2%	0	-	probably_damaging(0.998)	tolerated(1)	deleterious(0.474)	NULL
PKHD1	5314	genome.wustl.edu	37	6	51750691	51750691	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_138694.3	-1	reviewed	p.V2397F	0.845	101	0%	134	46.3%	0	-	probably_damaging(0.991)	deleterious(0.03)	deleterious(0.808)	superfamily_Pectin lyase-like
PKHD1	5314	genome.wustl.edu	37	6	51890888	51890888	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_138694.3	-1	reviewed	p.V1240	0.073	57	0%	99	42.4%	0	-	-	-	-	HMMPfam_TIG,HMMSmart_SM00429,superfamily_E set domains
GSTA1	2938	genome.wustl.edu	37	6	52658946	52658946	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_145740.3	-1	reviewed	p.R131C	0.000	506	0%	593	42.5%	31	38.7%	probably_damaging(0.982)	deleterious(0.02)	deleterious(0.809)	HMMPfam_GST_C,superfamily_Glutathione S-transferase (GST) C-terminal domain
GSTA3	2940	genome.wustl.edu	37	6	52768510	52768510	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000847.4	-1	reviewed	p.I35V	0.003	333	0.3%	459	39.9%	0	-	benign(0)	tolerated(0.19)	neutral(0.050)	HMMPfam_GST_N,superfamily_Thioredoxin-like
FBXO9	26268	genome.wustl.edu	37	6	52945803	52945803	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012347.4	+1	reviewed	p.L159F	1.000	182	0%	234	45.3%	51	52.9%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
FBXO9	26268	genome.wustl.edu	37	6	52962583	52962583	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000473318	+1	known	p.S182L	0.941	155	0%	218	44.5%	40	37.5%	-	-	-	NULL
LRRC1	55227	genome.wustl.edu	37	6	53785514	53785514	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018214.4	+1	validated	p.A457	0.117	302	0%	381	40.7%	74	50%	-	-	-	NULL
FAM83B	222584	genome.wustl.edu	37	6	54804760	54804760	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001010872.1	+1	validated	p.K331E	0.665	107	0%	159	42.8%	2	50%	benign(0.147)	deleterious(0.01)	neutral(0.419)	NULL
FAM83B	222584	genome.wustl.edu	37	6	54805141	54805141	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001010872.1	+1	validated	p.D458Y	1.000	116	0%	107	42.1%	0	-	benign(0.002)	deleterious(0.01)	neutral(0.406)	NULL
BMP5	653	genome.wustl.edu	37	6	55739342	55739342	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021073.2	-1	reviewed	p.E108*	1.000	185	0%	219	16%	0	-	-	-	-	HMMPfam_TGFb_propeptide
COL21A1	81578	genome.wustl.edu	37	6	55922468	55922468	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_030820.3	-1	reviewed	p.G954E	1.000	167	0%	204	39.7%	7	57.1%	unknown(0)	deleterious(0)	-	NULL
COL21A1	81578	genome.wustl.edu	37	6	55923987	55923987	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_030820.3	-1	reviewed	p.E888*	0.996	171	0%	292	41.4%	10	10%	-	-	-	NULL
COL21A1	81578	genome.wustl.edu	37	6	55924868	55924868	+	Splice_Site	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000467216	-1	known	NULL	0.993	128	0%	170	29.4%	12	50%	-	-	-	-
DST	667	genome.wustl.edu	37	6	56327871	56327871	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015548.4	-1	reviewed	p.C5034*	1.000	235	0%	387	43.4%	235	12.3%	-	-	-	NULL
DST	667	genome.wustl.edu	37	6	56342186	56342186	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015548.4	-1	reviewed	p.T4588I	1.000	462	0.2%	642	42.8%	84	13%	possibly_damaging(0.869)	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
DST	667	genome.wustl.edu	37	6	56374626	56374626	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015548.4	-1	reviewed	p.V3653M	1.000	256	0%	372	30.1%	44	2.2%	possibly_damaging(0.912)	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
DST	667	genome.wustl.edu	37	6	56394442	56394442	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015548.4	-1	reviewed	p.V3177G	0.999	296	0%	405	44.9%	14	21.4%	benign(0.034)	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
DST	667	genome.wustl.edu	37	6	56458517	56458517	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015548.4	-1	reviewed	p.E1601*	1.000	116	0%	144	43.8%	1	100%	-	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
DST	667	genome.wustl.edu	37	6	56471862	56471862	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000370769	-1	known	p.H2311N	0.000	169	0.6%	239	43.9%	0	-	benign(0.073)	deleterious(0)	neutral(0.450)	NULL
DST	667	genome.wustl.edu	37	6	56496794	56496794	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015548.4	-1	reviewed	p.R747*	1.000	271	0%	349	44.4%	0	-	-	-	-	superfamily_Spectrin repeat
DST	667	genome.wustl.edu	37	6	56499366	56499366	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015548.4	-1	reviewed	p.R593C	1.000	145	0%	203	38.4%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Spectrin repeat
DST	667	genome.wustl.edu	37	6	56535494	56535494	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000370769	-1	known	p.F176V	1.000	182	0%	187	40.1%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain
DST	667	genome.wustl.edu	37	6	56819234	56819234	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000370754	-1	known	p.S51L	1.000	56	0%	76	48.7%	0	-	benign(0.076)	deleterious(0)	neutral(0.450)	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
KIAA1586	57691	genome.wustl.edu	37	6	56919280	56919280	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020931.2	+1	validated	p.I661M	0.654	35	0%	33	39.4%	0	-	possibly_damaging(0.706)	tolerated(0.18)	neutral(0.310)	NULL
ZNF451	26036	genome.wustl.edu	37	6	57012053	57012053	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001031623.2	+1	validated	p.V390	0.000	99	0%	114	48.2%	4	0%	-	-	-	NULL
ZNF451	26036	genome.wustl.edu	37	6	57013005	57013005	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001031623.2	+1	validated	p.E708K	0.923	72	0%	71	40.8%	1	0%	probably_damaging(0.983)	tolerated(0.24)	neutral(0.466)	NULL
ZNF451	26036	genome.wustl.edu	37	6	57013323	57013323	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001031623.2	+1	validated	p.F814I	0.998	213	0%	242	43.4%	2	0%	benign(0.282)	tolerated(0.4)	neutral(0.102)	NULL
PRIM2	5558	genome.wustl.edu	37	6	57512550	57512550	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000425433	+1	known	p.D460Y	1.000	1032	0.1%	1236	13.7%	4	50%	-	-	-	NULL
PRIM2	5558	genome.wustl.edu	37	6	57512666	57512666	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000425433	+1	known	p.M498I	0.994	671	0%	742	16.4%	5	0%	-	-	-	NULL
FKBP1C	642489	genome.wustl.edu	37	6	63921546	63921546	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000370659	+1	known	p.G29R	0.995	162	0.6%	203	45.3%	12	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_FKBP_C,superfamily_SSF54534
EYS	346007	genome.wustl.edu	37	6	64940617	64940617	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001142800.1	-1	reviewed	p.A2098S	0.000	73	0%	126	38.1%	0	-	benign(0.282)	-	-	superfamily_Concanavalin A-like lectins/glucanases
EYS	346007	genome.wustl.edu	37	6	65098608	65098608	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001142800.1	-1	reviewed	p.F2018C	0.503	269	0%	281	38.1%	0	-	probably_damaging(0.989)	-	-	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
EYS	346007	genome.wustl.edu	37	6	65612390	65612390	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001142800.1	-1	reviewed	p.F882C	1.000	182	0%	271	43.2%	0	-	possibly_damaging(0.911)	-	-	HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_1,superfamily_EGF/Laminin
EYS	346007	genome.wustl.edu	37	6	66200596	66200596	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001142800.1	-1	reviewed	p.K251	0.696	129	0%	153	43.1%	0	-	-	-	-	HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_EGF/Laminin
BAI3	577	genome.wustl.edu	37	6	69665971	69665971	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001704.2	+1	reviewed	p.S417	0.399	155	0%	217	40.1%	1	0%	-	-	-	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
COL19A1	1310	genome.wustl.edu	37	6	70672759	70672759	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001858.4	+1	reviewed	p.E341D	1.000	106	0%	153	48.4%	0	-	unknown(0)	tolerated(0.53)	-	HMMPfam_Collagen
FAM135A	57579	genome.wustl.edu	37	6	71186900	71186900	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001105531.2	+1	validated	p.R136Q	1.000	281	0.4%	342	39.5%	4	0%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	NULL
FAM135A	57579	genome.wustl.edu	37	6	71235403	71235403	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001105531.2	+1	validated	p.L676F	0.987	95	0%	123	43.9%	0	-	benign(0.08)	tolerated(0.19)	neutral(0.055)	NULL
SMAP1	60682	genome.wustl.edu	37	6	71442144	71442144	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001044305.1	+1	reviewed	p.R61I	1.000	434	0%	521	43.6%	17	17.6%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_ArfGap,HMMSmart_SM00105,superfamily_Pyk2-associated protein beta ARF-GAP domain
KCNQ5	56479	genome.wustl.edu	37	6	73905002	73905002	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_019842.3	+1	reviewed	p.A888	0.000	78	0%	88	39.8%	0	-	-	-	-	NULL
COL12A1	1303	genome.wustl.edu	37	6	75831017	75831017	+	Splice_Site	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004370.5	-1	reviewed	e43+1	1.000	101	0%	106	46.2%	0	-	-	-	-	-
FILIP1	27145	genome.wustl.edu	37	6	76124542	76124542	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015687.2	-1	validated	p.V49	1.000	332	0.3%	434	16.8%	0	-	-	-	-	NULL
MYO6	4646	genome.wustl.edu	37	6	76595778	76595778	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004999.3	+1	reviewed	p.R825Q	1.000	112	0.9%	125	24.8%	7	14.2%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_IQ,superfamily_P-loop containing nucleoside triphosphate hydrolases
PHIP	55023	genome.wustl.edu	37	6	79726309	79726309	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017934.5	-1	validated	p.R396Q	1.000	295	0%	366	45.9%	8	25%	probably_damaging(0.988)	tolerated(0.84)	neutral(0.438)	superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase
LCA5	167691	genome.wustl.edu	37	6	80197371	80197371	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001122769.2	-1	reviewed	p.R482*	0.001	249	0%	366	38.5%	1	0%	-	-	-	NULL
LCA5	167691	genome.wustl.edu	37	6	80222980	80222980	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001122769.2	-1	reviewed	p.K223N	1.000	322	0%	403	40.9%	0	-	probably_damaging(0.999)	tolerated(0.09)	deleterious(0.787)	NULL
TTK	7272	genome.wustl.edu	37	6	80736183	80736183	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003318.4	+1	reviewed	p.S449Y	0.885	206	0%	234	16.2%	2	50%	benign(0.003)	tolerated(1)	-	NULL
DOPEY1	23033	genome.wustl.edu	37	6	83847603	83847603	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015018.2	+1	validated	p.S1281L	0.992	88	0%	86	41.9%	0	-	benign(0.069)	deleterious(0.02)	neutral(0.388)	NULL
DOPEY1	23033	genome.wustl.edu	37	6	83866985	83866985	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015018.2	+1	validated	p.R2230I	1.000	268	0%	372	41.1%	6	16.6%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
DOPEY1	23033	genome.wustl.edu	37	6	83872589	83872589	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015018.2	+1	validated	p.F2348C	1.000	301	0%	357	49.3%	9	66.6%	probably_damaging(1)	tolerated(0.24)	deleterious(0.537)	NULL
DOPEY1	23033	genome.wustl.edu	37	6	83872624	83872624	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015018.2	+1	validated	p.R2360W	1.000	268	0%	345	17.1%	8	25%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
ME1	4199	genome.wustl.edu	37	6	83921787	83921787	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002395.4	-1	reviewed	p.K525N	1.000	280	0%	316	42.7%	1	0%	benign(0)	tolerated(0.26)	neutral(0.034)	superfamily_NAD(P)-bd
ME1	4199	genome.wustl.edu	37	6	84117621	84117621	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002395.4	-1	reviewed	e2-1	1.000	138	0%	168	47.6%	0	-	-	-	-	-
SNAP91	9892	genome.wustl.edu	37	6	84371287	84371287	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014841.2	-1	validated	p.R129I	1.000	185	0.5%	202	13.9%	0	-	benign(0.276)	deleterious(0.04)	neutral(0.378)	superfamily_ENTH/VHS domain,HMMPfam_ANTH,HMMSmart_SM00273
CYB5R4	51167	genome.wustl.edu	37	6	84646049	84646049	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016230.3	+1	validated	p.I354	0.997	173	0%	175	44%	0	-	-	-	-	HMMPfam_FAD_binding_6,superfamily_Riboflavin_synthase_like_b-brl
MRAP2	112609	genome.wustl.edu	37	6	84765113	84765113	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_138409.2	+1	validated	p.E26*	1.000	171	0%	219	22.8%	0	-	-	-	-	NULL
SNX14	57231	genome.wustl.edu	37	6	86275106	86275106	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_153816.3	-1	reviewed	p.E165*	1.000	182	0%	225	42.2%	2	0%	-	-	-	HMMPfam_PXA,HMMSmart_SM00313
HTR1E	3354	genome.wustl.edu	37	6	87725129	87725129	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000865.2	+1	validated	p.C26Y	0.377	101	0%	111	45.9%	0	-	benign(0)	deleterious(0.02)	neutral(0.383)	superfamily_SSF81321
ZNF292	23036	genome.wustl.edu	37	6	87964844	87964844	+	Silent	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015021.1	+1	validated	p.G499	0.575	376	0%	346	43.4%	3	0%	-	-	-	NULL
ZNF292	23036	genome.wustl.edu	37	6	87967866	87967866	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015021.1	+1	validated	p.E1507K	0.980	74	0%	69	40.6%	17	35.2%	benign(0.056)	deleterious(0)	neutral(0.448)	NULL
ZNF292	23036	genome.wustl.edu	37	6	87969514	87969514	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015021.1	+1	validated	p.S2056Y	1.000	123	0%	166	44%	2	100%	possibly_damaging(0.716)	tolerated(0.05)	deleterious(0.605)	NULL
ZNF292	23036	genome.wustl.edu	37	6	87971059	87971059	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015021.1	+1	validated	p.I2571S	1.000	35	0%	54	48.1%	6	83.3%	possibly_damaging(0.444)	deleterious(0)	deleterious(0.590)	NULL
SLC35A1	10559	genome.wustl.edu	37	6	88218249	88218249	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006416.4	+1	reviewed	p.D229A	1.000	279	0%	404	37.1%	5	40%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_Nuc_sug_transp
SLC35A1	10559	genome.wustl.edu	37	6	88218809	88218809	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006416.4	+1	reviewed	p.D268N	1.000	200	0%	307	13.7%	46	10.8%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Nuc_sug_transp
RARS2	57038	genome.wustl.edu	37	6	88251649	88251649	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020320.3	-1	reviewed	p.Q200R	1.000	178	0%	215	34.9%	9	33.3%	probably_damaging(0.989)	deleterious(0.02)	deleterious(0.823)	HMMPfam_tRNA-synt_1d,superfamily_Nucleotidylyl transferase
SPACA1	81833	genome.wustl.edu	37	6	88757753	88757753	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_030960.2	+1	reviewed	p.E44K	0.906	13	0%	17	47.1%	0	-	possibly_damaging(0.78)	deleterious(0)	deleterious(0.736)	NULL
SPACA1	81833	genome.wustl.edu	37	6	88767344	88767344	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_030960.2	+1	reviewed	p.E94K	1.000	315	0%	368	41%	0	-	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	NULL
RNGTT	8732	genome.wustl.edu	37	6	89563347	89563347	+	Splice_Site	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003800.3	-1	validated	e9+1	1.000	131	0%	175	44%	0	-	-	-	-	-
PM20D2	135293	genome.wustl.edu	37	6	89859027	89859027	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001010853.1	+1	validated	p.K170T	1.000	338	0.3%	391	43%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Peptidase_M20,superfamily_Zn-dependent exopeptidases
PM20D2	135293	genome.wustl.edu	37	6	89868140	89868140	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001010853.1	+1	validated	p.E337*	0.998	233	0%	305	39%	1	0%	-	-	-	superfamily_Zn-dependent exopeptidases
GABRR1	2569	genome.wustl.edu	37	6	89888502	89888502	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002042.3	-1	reviewed	p.S476Y	1.000	146	0%	206	46.1%	0	-	possibly_damaging(0.908)	tolerated(0.15)	deleterious(0.603)	superfamily_Neurotransmitter-gated ion-channel transmembrane pore
RRAGD	58528	genome.wustl.edu	37	6	90087487	90087487	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021244.4	-1	validated	p.I269F	1.000	174	0%	209	40.2%	0	-	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	HMMPfam_Gtr1_RagA
ANKRD6	22881	genome.wustl.edu	37	6	90340305	90340305	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014942.3	+1	validated	p.R584I	0.787	41	0%	42	31%	12	75%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
MDN1	23195	genome.wustl.edu	37	6	90359850	90359850	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014611.1	-1	provisional	p.R5367W	1.000	218	0%	260	48.1%	34	35.2%	unknown(0)	deleterious(0)	-	NULL
MDN1	23195	genome.wustl.edu	37	6	90448152	90448152	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014611.1	-1	provisional	p.R1539Q	1.000	130	0%	193	39.9%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases
GJA10	84694	genome.wustl.edu	37	6	90604379	90604379	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032602.1	+1	validated	p.I64	1.000	247	0%	300	37.3%	0	-	-	-	-	HMMPfam_Connexin,HMMSmart_CNX,PatternScan_CONNEXINS_1
GJA10	84694	genome.wustl.edu	37	6	90604499	90604499	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032602.1	+1	validated	p.E104D	1.000	212	0%	245	44.1%	0	-	probably_damaging(0.997)	deleterious(0.03)	deleterious(0.831)	HMMPfam_Connexin
GPR63	81491	genome.wustl.edu	37	6	97246855	97246855	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001143957.1	-1	validated	p.F251L	1.000	55	0%	62	22.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
FBXL4	26235	genome.wustl.edu	37	6	99374572	99374572	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012160.3	-1	reviewed	p.R98Q	1.000	120	0%	155	35.5%	9	44.4%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
PNISR	25957	genome.wustl.edu	37	6	99848733	99848733	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015491.1	-1	validated	p.D701Y	1.000	426	0.5%	475	37.7%	13	46.1%	possibly_damaging(0.882)	deleterious(0.03)	deleterious(0.709)	NULL
USP45	85015	genome.wustl.edu	37	6	99956569	99956569	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001080481.1	-1	provisional	p.E64K	1.000	202	0%	256	37.5%	0	-	probably_damaging(0.976)	deleterious(0.04)	deleterious(0.767)	HMMPfam_zf-UBP
CCNC	892	genome.wustl.edu	37	6	99993053	99993053	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005190.3	-1	reviewed	p.F244	1.000	580	0%	629	18.3%	12	8.3%	-	-	-	superfamily_Cyclin-like
CCNC	892	genome.wustl.edu	37	6	99997420	99997420	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005190.3	-1	reviewed	p.L188I	1.000	176	0%	217	40.1%	106	37.7%	benign(0.076)	tolerated(0.16)	neutral(0.065)	HMMSmart_SM00385,superfamily_Cyclin-like
PRDM13	59336	genome.wustl.edu	37	6	100054978	100054978	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021620.3	+1	validated	p.R23H	1.000	12	0%	28	46.4%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SET
PRDM13	59336	genome.wustl.edu	37	6	100062413	100062413	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021620.3	+1	validated	p.F634L	1.000	8	0.000	15	0.400	0	-	possibly_damaging(0.888)	tolerated(0.15)	deleterious(0.589)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
SIM1	6492	genome.wustl.edu	37	6	100911292	100911292	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005068.2	-1	reviewed	p.S18N	1.000	438	0%	473	41.6%	0	-	possibly_damaging(0.894)	tolerated(0.09)	deleterious(0.648)	HMMPfam_HLH,HMMSmart_HLH
ASCC3	10973	genome.wustl.edu	37	6	101248282	101248282	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006828.2	-1	validated	p.R341*	1.000	516	0%	685	21.8%	0	-	-	-	-	NULL
HACE1	57531	genome.wustl.edu	37	6	105232049	105232049	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020771.3	-1	validated	e14-1	1.000	85	0%	87	35.6%	0	-	-	-	-	-
POPDC3	64208	genome.wustl.edu	37	6	105606601	105606601	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_022361.4	-1	reviewed	p.C207S	1.000	108	0%	136	30.1%	0	-	benign(0.294)	tolerated(0.22)	neutral(0.133)	HMMPfam_Popeye,superfamily_cAMP-binding domain-like
ATG5	9474	genome.wustl.edu	37	6	106727697	106727697	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004849.2	-1	validated	p.S106I	1.000	142	0%	161	41%	17	52.9%	benign(0.347)	deleterious(0.01)	deleterious(0.516)	HMMPfam_APG5
AIM1	202	genome.wustl.edu	37	6	106967350	106967350	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001624.2	+1	validated	p.S348L	0.000	107	0%	172	43.6%	1	0%	benign(0.006)	deleterious(0)	neutral(0.445)	NULL
AIM1	202	genome.wustl.edu	37	6	106967862	106967862	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001624.2	+1	validated	p.E519*	0.000	42	0%	53	34%	1	0%	-	-	-	NULL
AIM1	202	genome.wustl.edu	37	6	107003762	107003762	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001624.2	+1	validated	p.F1494C	0.837	407	0%	576	44.3%	0	-	possibly_damaging(0.794)	tolerated(0.19)	neutral(0.347)	HMMPfam_Crystall,HMMSmart_XTALbg,superfamily_G_crystallin_SF
C6orf203	51250	genome.wustl.edu	37	6	107361339	107361339	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001142470.1	+1	validated	p.D130	1.000	247	0%	343	39.9%	5	60%	-	-	-	NULL
NR2E1	7101	genome.wustl.edu	37	6	108502102	108502102	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003269.3	+1	validated	p.Q277H	0.998	134	0%	154	44.8%	0	-	probably_damaging(0.996)	tolerated(0.13)	deleterious(0.714)	HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain
LACE1	246269	genome.wustl.edu	37	6	108645173	108645173	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_145315.3	+1	reviewed	p.R95I	1.000	139	0%	174	46.6%	0	-	benign(0.361)	deleterious(0.04)	neutral(0.463)	superfamily_SSF52540
MICAL1	64780	genome.wustl.edu	37	6	109773593	109773593	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_022765.3	-1	validated	p.R230*	0.017	89	0%	139	43.2%	7	14.2%	-	-	-	superfamily_FAD/NAD(P)-binding domain
AKD1	221264	genome.wustl.edu	37	6	109980458	109980458	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001145128.2	-1	provisional	p.E201D	0.997	422	0%	555	26.3%	3	66.6%	probably_damaging(0.984)	tolerated(0.34)	neutral(0.454)	HMMPfam_ADK,superfamily_P-loop containing nucleoside triphosphate hydrolases
WASF1	8936	genome.wustl.edu	37	6	110434532	110434532	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001024934.1	-1	reviewed	p.E89*	1.000	164	0%	207	39.6%	6	66.6%	-	-	-	NULL
METTL24	728464	genome.wustl.edu	37	6	110567159	110567159	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001123364.1	-1	inferred	p.R364I	0.926	227	0%	323	43.3%	28	25%	possibly_damaging(0.906)	deleterious(0.01)	deleterious(0.765)	NULL
CDK19	23097	genome.wustl.edu	37	6	110935857	110935857	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015076.3	-1	reviewed	p.R464C	1.000	156	0%	231	47.2%	16	43.7%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
REV3L	5980	genome.wustl.edu	37	6	111694781	111694781	+	Nonsense_Mutation	SNP	C	C	A	rs138761049		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002912.3	-1	validated	p.E1593*	1.000	237	0%	224	50.4%	3	0%	-	-	-	superfamily_Ribonuclease H-like
REV3L	5980	genome.wustl.edu	37	6	111696388	111696388	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002912.3	-1	validated	p.K1057I	1.000	388	0%	478	14.6%	0	-	possibly_damaging(0.901)	deleterious(0)	deleterious(0.801)	superfamily_Ribonuclease H-like
REV3L	5980	genome.wustl.edu	37	6	111696995	111696995	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002912.3	-1	validated	p.D855Y	1.000	151	0%	153	22.2%	0	-	benign(0.001)	deleterious(0)	neutral(0.445)	superfamily_Ribonuclease H-like
FYN	2534	genome.wustl.edu	37	6	112020771	112020771	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_153047.1	-1	reviewed	p.S267L	0.924	238	0%	311	39.9%	1	0%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	superfamily_Kinase_like,superfamily_SSF55550
WISP3	8838	genome.wustl.edu	37	6	112390774	112390774	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_198239.1	+1	reviewed	p.R357I	1.000	148	0%	161	36.6%	0	-	possibly_damaging(0.509)	tolerated(0.38)	neutral(0.188)	HMMSmart_SM00041,HMMPfam_Cys_knot
RFPL4B	442247	genome.wustl.edu	37	6	112671427	112671427	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001013734.2	+1	validated	p.D173N	0.000	89	0%	82	35.4%	0	-	benign(0.305)	tolerated(0.57)	neutral(0.101)	HMMPfam_SPRY
HDAC2	3066	genome.wustl.edu	37	6	114264668	114264668	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001527.3	-1	reviewed	p.R503*	1.000	198	0%	307	43.6%	36	11.1%	-	-	-	NULL
RWDD1	51389	genome.wustl.edu	37	6	116910017	116910017	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015952.2	+1	validated	p.L95I	1.000	215	0%	273	17.9%	7	14.2%	benign(0.041)	tolerated(0.28)	neutral(0.034)	HMMPfam_RWD,HMMSmart_SM00591,superfamily_UBC-like
ZUFSP	221302	genome.wustl.edu	37	6	116980078	116980078	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_145062.2	-1	validated	p.R227I	0.992	305	0%	347	42.4%	5	20%	benign(0.055)	tolerated(0.53)	neutral(0.011)	NULL
KPNA5	3841	genome.wustl.edu	37	6	117019939	117019939	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002269.2	+1	reviewed	p.R138I	1.000	89	0%	107	37.4%	0	-	possibly_damaging(0.482)	deleterious(0.01)	deleterious(0.566)	HMMPfam_Arm,HMMSmart_SM00185,superfamily_ARM repeat
RFX6	222546	genome.wustl.edu	37	6	117245873	117245873	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_173560.2	+1	validated	p.L533I	1.000	394	0.3%	475	47.8%	0	-	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	NULL
ROS1	6098	genome.wustl.edu	37	6	117647426	117647426	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002944.2	-1	reviewed	p.E1840*	1.000	215	0%	310	39%	0	-	-	-	-	superfamily_FN_III-like
ROS1	6098	genome.wustl.edu	37	6	117708133	117708133	+	Missense_Mutation	SNP	T	T	G	rs78135931		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002944.2	-1	reviewed	p.K682Q	1.000	228	0%	245	47.3%	0	-	probably_damaging(0.959)	tolerated(0.42)	neutral(0.417)	superfamily_SSF63825
ROS1	6098	genome.wustl.edu	37	6	117718123	117718123	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002944.2	-1	reviewed	p.R245I	1.000	296	0%	390	40.3%	0	-	possibly_damaging(0.66)	tolerated(0.1)	deleterious(0.519)	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
SLC35F1	222553	genome.wustl.edu	37	6	118556792	118556792	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001029858.3	+1	validated	p.S157I	1.000	204	0%	258	15.9%	0	-	possibly_damaging(0.937)	deleterious(0)	deleterious(0.828)	HMMPfam_DUF914
CEP85L	387119	genome.wustl.edu	37	6	118804939	118804939	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001042475.2	-1	validated	p.R507I	1.000	722	0%	796	44%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PLN	5350	genome.wustl.edu	37	6	118880157	118880157	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002667.3	+1	reviewed	p.R25C	1.000	262	0%	388	44.1%	0	-	possibly_damaging(0.693)	deleterious(0)	deleterious(0.693)	HMMPfam_Phospholamban
MCM9	254394	genome.wustl.edu	37	6	119238766	119238766	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_153255.3	-1	reviewed	p.F288	1.000	196	0%	234	41.5%	3	0%	-	-	-	HMMPfam_MCM,HMMSmart_MCM
MAN1A1	4121	genome.wustl.edu	37	6	119669881	119669881	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005907.2	-1	reviewed	p.L117P	0.794	23	0%	30	53.3%	0	-	benign(0.104)	tolerated(0.31)	neutral(0.035)	NULL
C6orf170	221322	genome.wustl.edu	37	6	121434286	121434286	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152730.4	-1	validated	p.E1031*	1.000	237	0%	303	41.3%	0	-	-	-	-	NULL
FABP7	2173	genome.wustl.edu	37	6	123101508	123101508	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001446.3	+1	reviewed	p.K49R	1.000	173	0%	252	37.3%	0	-	benign(0.08)	tolerated(0.16)	neutral(0.065)	HMMPfam_Lipocalin,superfamily_Lipocalins
TRDN	10345	genome.wustl.edu	37	6	123592329	123592329	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006073.2	-1	validated	p.E559*	1.000	279	0%	417	41.5%	0	-	-	-	-	NULL
RNF146	81847	genome.wustl.edu	37	6	127608617	127608617	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_030963.2	+1	provisional	p.E286K	1.000	206	0%	330	15.2%	42	19%	possibly_damaging(0.892)	deleterious(0.02)	deleterious(0.734)	NULL
ECHDC1	55862	genome.wustl.edu	37	6	127651971	127651971	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001139510.1	-1	validated	p.R74I	1.000	108	0%	141	44%	30	46.6%	benign(0.001)	tolerated(0.11)	neutral(0.272)	HMMPfam_ECH,superfamily_ClpP/crotonase
KIAA0408	9729	genome.wustl.edu	37	6	127768383	127768383	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014702.4	-1	validated	p.W361R	0.119	224	0%	373	16.9%	0	-	possibly_damaging(0.922)	deleterious(0)	deleterious(0.816)	NULL
KIAA0408	9729	genome.wustl.edu	37	6	127768692	127768692	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014702.4	-1	validated	p.D258N	0.000	201	0%	194	43.3%	0	-	possibly_damaging(0.81)	tolerated(0.52)	neutral(0.314)	NULL
KIAA0408	9729	genome.wustl.edu	37	6	127771348	127771348	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014702.4	-1	validated	p.T95	0.006	385	0%	509	45.6%	0	-	-	-	-	NULL
THEMIS	387357	genome.wustl.edu	37	6	128134972	128134972	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001010923.2	-1	reviewed	p.D272Y	1.000	191	0%	232	25%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
THEMIS	387357	genome.wustl.edu	37	6	128135074	128135074	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001010923.2	-1	reviewed	p.R238*	0.300	97	0%	104	46.2%	0	-	-	-	-	NULL
LAMA2	3908	genome.wustl.edu	37	6	129618885	129618885	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000426.3	+1	reviewed	p.S971Y	1.000	135	0%	203	42.9%	4	0%	possibly_damaging(0.885)	tolerated(0.28)	neutral(0.377)	HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,superfamily_ConA_like_lec_gl,superfamily_SSF57196
ARHGAP18	93663	genome.wustl.edu	37	6	130031180	130031180	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033515.2	-1	validated	p.E34D	0.997	147	0%	156	29.5%	6	33.3%	possibly_damaging(0.476)	tolerated(0.59)	neutral(0.162)	NULL
AKAP7	9465	genome.wustl.edu	37	6	131540861	131540861	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016377.2	+1	reviewed	p.E233*	1.000	234	0%	254	12.6%	1	0%	-	-	-	superfamily_LigT-like,HMMPfam_AKAP7_NLS
MED23	9439	genome.wustl.edu	37	6	131943113	131943113	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004830.2	-1	reviewed	p.R135*	1.000	82	0%	88	37.5%	2	0%	-	-	-	NULL
ENPP1	5167	genome.wustl.edu	37	6	132186068	132186068	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006208.2	+1	reviewed	p.V385G	1.000	168	0%	224	43.8%	0	-	probably_damaging(0.992)	tolerated(0.34)	deleterious(0.471)	HMMPfam_Phosphodiest,superfamily_Alkaline_phosphatase_core
VNN2	8875	genome.wustl.edu	37	6	133073750	133073750	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004665.2	-1	reviewed	p.D226Y	0.191	155	0.6%	206	42.7%	1	0%	probably_damaging(0.976)	deleterious(0.01)	deleterious(0.824)	superfamily_Ntlse/CNhydtse
LOC285735	285735	genome.wustl.edu	37	6	133427512	133427512	+	RNA	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NR_026969.1	+1	predicted	NULL	0.003	19	0%	30	43.3%	0	-	-	-	-	-
EYA4	2070	genome.wustl.edu	37	6	133782312	133782312	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004100.4	+1	reviewed	p.P144H	1.000	271	0%	341	47.2%	0	-	probably_damaging(0.993)	deleterious(0.01)	deleterious(0.856)	NULL
ALDH8A1	64577	genome.wustl.edu	37	6	135260455	135260455	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_022568.2	-1	reviewed	p.E181*	1.000	115	0%	184	42.9%	0	-	-	-	-	HMMPfam_Aldedh,superfamily_ALDH-like
MYB	4602	genome.wustl.edu	37	6	135524361	135524361	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001130173.1	+1	reviewed	p.L690I	1.000	214	0%	266	40.6%	7	42.8%	unknown(0)	deleterious(0.03)	-	HMMPfam_Cmyb_C
AHI1	54806	genome.wustl.edu	37	6	135776878	135776878	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001134830.1	-1	reviewed	p.F446L	1.000	88	0%	111	36.9%	1	100%	possibly_damaging(0.921)	tolerated(0.76)	neutral(0.372)	superfamily_WD40 repeat-like
PDE7B	27115	genome.wustl.edu	37	6	136268611	136268611	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018945.3	+1	reviewed	p.E11K	1.000	317	0%	392	25%	0	-	possibly_damaging(0.829)	tolerated(0.07)	deleterious(0.633)	NULL
FAM54A	113115	genome.wustl.edu	37	6	136562720	136562720	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001099286.1	-1	validated	p.E126*	0.002	369	0%	378	47.1%	0	-	-	-	-	HMMPfam_DUF729
MAP7	9053	genome.wustl.edu	37	6	136742865	136742865	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003980.3	-1	reviewed	p.N47S	0.054	496	0%	635	17.8%	16	43.7%	unknown(0)	tolerated(0.14)	-	NULL
MAP3K5	4217	genome.wustl.edu	37	6	136913591	136913591	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005923.3	-1	reviewed	p.R1014W	0.960	190	0%	178	46.1%	1	100%	probably_damaging(0.997)	deleterious(0.03)	deleterious(0.831)	NULL
IL20RA	53832	genome.wustl.edu	37	6	137323265	137323265	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014432.2	-1	reviewed	p.S364	0.000	43	0%	81	53.1%	23	65.2%	-	-	-	NULL
IL20RA	53832	genome.wustl.edu	37	6	137323457	137323457	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014432.2	-1	reviewed	p.F300L	0.999	53	0%	53	47.2%	7	57.1%	benign(0.001)	tolerated(0.18)	neutral(0.056)	NULL
IFNGR1	3459	genome.wustl.edu	37	6	137519306	137519306	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000416.2	-1	reviewed	p.E444D	0.001	532	0%	705	21.8%	13	23%	benign(0.001)	tolerated(0.66)	neutral(0.003)	HMMPfam_IFNGR1
ECT2L	345930	genome.wustl.edu	37	6	139134419	139134419	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001077706.1	+1	validated	p.S3N	1.000	89	0%	118	41.5%	0	-	benign(0.184)	tolerated(0.09)	neutral(0.314)	NULL
TXLNB	167838	genome.wustl.edu	37	6	139581468	139581468	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_153235.3	-1	validated	p.R330L	0.733	326	0%	367	12.3%	0	-	possibly_damaging(0.874)	tolerated(0.06)	deleterious(0.662)	HMMPfam_Taxilin
VTA1	51534	genome.wustl.edu	37	6	142468515	142468515	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016485.3	+1	provisional	p.D31Y	1.000	91	0%	116	22.4%	29	31%	possibly_damaging(0.937)	deleterious(0)	deleterious(0.828)	HMMPfam_DUF605
GPR126	57211	genome.wustl.edu	37	6	142723859	142723859	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_198569.2	+1	reviewed	p.I616N	1.000	193	0%	267	44.6%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
HIVEP2	3097	genome.wustl.edu	37	6	143082692	143082692	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006734.3	-1	provisional	p.T1843	0.985	97	0%	140	47.1%	6	66.6%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
HIVEP2	3097	genome.wustl.edu	37	6	143090970	143090970	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006734.3	-1	provisional	p.L1636I	1.000	68	0%	85	51.8%	8	37.5%	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	NULL
HIVEP2	3097	genome.wustl.edu	37	6	143091920	143091920	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006734.3	-1	provisional	p.A1319V	0.940	68	0%	98	14.3%	6	0%	benign(0.001)	tolerated(0.26)	neutral(0.034)	NULL
FUCA2	2519	genome.wustl.edu	37	6	143828439	143828439	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032020.3	-1	validated	p.Q116R	0.188	190	0%	250	12.4%	6	16.6%	benign(0.009)	tolerated(0.32)	neutral(0.025)	HMMPfam_Alpha_L_fucos,HMMSmart_Alpha_L_fucos,superfamily_Glyco_hydro_cat
PHACTR2	9749	genome.wustl.edu	37	6	144093492	144093492	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001100164.1	+1	validated	p.E444*	0.847	151	0%	196	39.8%	9	55.5%	-	-	-	NULL
PLAGL1	5325	genome.wustl.edu	37	6	144263090	144263090	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001080951.1	-1	reviewed	p.S288L	0.000	196	0%	254	47.2%	5	0%	benign(0.012)	tolerated(0.07)	neutral(0.320)	NULL
UTRN	7402	genome.wustl.edu	37	6	144783844	144783844	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007124.2	+1	reviewed	p.E970*	1.000	160	0.6%	192	41.1%	0	-	-	-	-	HMMSmart_SPEC,superfamily_Spectrin
UTRN	7402	genome.wustl.edu	37	6	144844318	144844318	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007124.2	+1	reviewed	p.R1967Q	0.942	197	0%	217	39.6%	8	50%	probably_damaging(1)	tolerated(0.13)	deleterious(0.752)	superfamily_Spectrin
UTRN	7402	genome.wustl.edu	37	6	145110329	145110329	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007124.2	+1	reviewed	e61-1	1.000	329	0%	390	17.7%	0	-	-	-	-	-
GRM1	2911	genome.wustl.edu	37	6	146350772	146350772	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000838.3	+1	reviewed	p.R40I	1.000	53	0%	123	46.3%	0	-	benign(0.406)	tolerated(0.31)	neutral(0.158)	superfamily_SSF53822
GRM1	2911	genome.wustl.edu	37	6	146480673	146480673	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000838.3	+1	reviewed	p.R297Q	1.000	81	0%	112	42%	0	-	probably_damaging(0.956)	deleterious(0)	deleterious(0.844)	HMMPfam_ANF_receptor,superfamily_SSF53822
GRM1	2911	genome.wustl.edu	37	6	146673441	146673441	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000838.3	+1	reviewed	p.I414	1.000	106	0%	170	47.1%	0	-	-	-	-	HMMPfam_ANF_receptor,superfamily_SSF53822
GRM1	2911	genome.wustl.edu	37	6	146755010	146755010	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000838.3	+1	reviewed	p.S888Y	1.000	38	0%	64	26.6%	0	-	benign(0.187)	deleterious(0.02)	neutral(0.401)	NULL
STXBP5	134957	genome.wustl.edu	37	6	147685147	147685147	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001127715.1	+1	reviewed	p.L976V	0.969	172	0%	228	43.4%	23	39.1%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
SASH1	23328	genome.wustl.edu	37	6	148792605	148792605	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015278.3	+1	validated	p.K160N	1.000	113	0%	114	37.7%	3	66.6%	possibly_damaging(0.917)	deleterious(0)	deleterious(0.812)	NULL
SASH1	23328	genome.wustl.edu	37	6	148855026	148855026	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015278.3	+1	validated	p.E618D	1.000	36	0%	56	32.1%	3	66.6%	probably_damaging(0.969)	deleterious(0.01)	deleterious(0.817)	superfamily_SH3-domain
TAB2	23118	genome.wustl.edu	37	6	149700064	149700064	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015093.4	+1	reviewed	p.S338Y	1.000	159	0%	176	47.7%	13	30.7%	probably_damaging(0.961)	deleterious(0.01)	deleterious(0.810)	NULL
PPIL4	85313	genome.wustl.edu	37	6	149826701	149826701	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_139126.2	-1	reviewed	p.S456I	0.326	677	0%	772	42%	6	16.6%	unknown(0)	-	-	superfamily_RNA-binding domain RBD
KATNA1	11104	genome.wustl.edu	37	6	149922848	149922848	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007044.2	-1	reviewed	p.L257P	0.998	152	0%	152	43.4%	15	40%	probably_damaging(0.983)	deleterious(0)	deleterious(0.873)	HMMSmart_SM00382,HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases
RAET1G	353091	genome.wustl.edu	37	6	150238093	150238093	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001001788.2	-1	provisional	p.N320	0.003	56	0%	41	39%	1	0%	-	-	-	NULL
MTHFD1L	25902	genome.wustl.edu	37	6	151266647	151266647	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015440.3	+1	validated	p.E531D	0.245	416	0%	435	10.8%	0	-	benign(0.025)	tolerated(0.06)	neutral(0.324)	HMMPfam_FTHFS,superfamily_P-loop containing nucleoside triphosphate hydrolases
AKAP12	9590	genome.wustl.edu	37	6	151670334	151670334	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005100.3	+1	reviewed	p.E270*	0.067	76	0%	73	23.3%	3	0%	-	-	-	NULL
AKAP12	9590	genome.wustl.edu	37	6	151670701	151670701	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005100.3	+1	reviewed	p.S392Y	0.189	43	0%	66	31.8%	3	100%	possibly_damaging(0.745)	deleterious(0.03)	deleterious(0.638)	NULL
C6orf97	80129	genome.wustl.edu	37	6	151859208	151859208	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_025059.3	+1	validated	p.S72Y	1.000	70	0%	60	48.3%	0	-	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	NULL
ESR1	2099	genome.wustl.edu	37	6	152419977	152419977	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000125.3	+1	reviewed	p.R555H	0.000	92	0%	102	47.1%	460	48.6%	benign(0.001)	tolerated(0.06)	neutral(0.323)	NULL
SYNE1	23345	genome.wustl.edu	37	6	152551809	152551809	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_182961.2	-1	reviewed	p.S7023F	1.000	220	0%	247	39.7%	1	0%	possibly_damaging(0.952)	tolerated(0.3)	neutral(0.424)	HMMPfam_Spectrin,superfamily_Spectrin repeat
SYNE1	23345	genome.wustl.edu	37	6	152552694	152552694	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_182961.2	-1	reviewed	p.K6957N	1.000	164	0%	197	38.6%	1	0%	benign(0.185)	deleterious(0.03)	neutral(0.382)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SYNE1	23345	genome.wustl.edu	37	6	152642451	152642451	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_182961.2	-1	reviewed	p.L5386	1.000	295	0%	370	45.4%	0	-	-	-	-	NULL
SYNE1	23345	genome.wustl.edu	37	6	152748871	152748871	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_182961.2	-1	reviewed	p.S1686Y	1.000	350	0%	398	48.7%	0	-	possibly_damaging(0.492)	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SYNE1	23345	genome.wustl.edu	37	6	152809548	152809548	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_182961.2	-1	reviewed	p.L344V	0.988	442	0.2%	484	44.4%	0	-	probably_damaging(0.999)	tolerated(0.52)	deleterious(0.499)	NULL
SCAF8	22828	genome.wustl.edu	37	6	155141454	155141454	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014892.3	+1	validated	p.E593D	1.000	166	0.6%	208	49.5%	12	16.6%	benign(0.337)	tolerated(0.22)	neutral(0.148)	NULL
SCAF8	22828	genome.wustl.edu	37	6	155153958	155153958	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014892.3	+1	validated	p.R1082I	1.000	64	0%	83	37.3%	12	33.3%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
ARID1B	57492	genome.wustl.edu	37	6	157517326	157517326	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017519.2	+1	validated	p.T1279M	0.995	91	0%	107	43.9%	44	36.3%	probably_damaging(0.999)	-	-	NULL
TMEM242	729515	genome.wustl.edu	37	6	157714019	157714019	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018452.4	-1	validated	p.R114*	1.000	332	0%	399	40.6%	19	42.1%	-	-	-	HMMPfam_DUF1358
SYNJ2	8871	genome.wustl.edu	37	6	158480335	158480335	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003898.3	+1	reviewed	p.N302H	1.000	29	0%	51	43.1%	8	75%	possibly_damaging(0.922)	deleterious(0)	deleterious(0.816)	HMMPfam_Syja_N
SYTL3	94120	genome.wustl.edu	37	6	159185627	159185627	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001009991.2	+1	validated	p.V540	0.987	67	0%	93	45.2%	30	43.3%	unknown(0)	-	-	NULL
TAGAP	117289	genome.wustl.edu	37	6	159459250	159459250	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_054114.3	-1	reviewed	p.L265P	0.000	163	0%	166	46.4%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_SM00324,superfamily_GTPase activation domain GAP
FNDC1	84624	genome.wustl.edu	37	6	159644677	159644677	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032532.2	+1	validated	p.R295I	1.000	421	0.2%	563	45.5%	4	0%	unknown(0)	deleterious(0)	-	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
SOD2	6648	genome.wustl.edu	37	6	160113601	160113601	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000452684	-1	known	p.E127	0.000	28	0%	40	40%	0	-	-	-	-	NULL
WTAP	9589	genome.wustl.edu	37	6	160169304	160169304	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004906.3	+1	reviewed	p.L119V	1.000	221	0%	288	15.6%	32	15.6%	benign(0.009)	tolerated(0.32)	neutral(0.025)	NULL
TCP1	6950	genome.wustl.edu	37	6	160200171	160200171	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_030752.2	-1	reviewed	p.R526Q	1.000	183	0%	223	48.4%	93	41.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cpn60_TCP1,superfamily_GroEL-ATPase
TCP1	6950	genome.wustl.edu	37	6	160201095	160201095	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_030752.2	-1	reviewed	p.S374	0.997	106	0%	125	37.6%	128	44.5%	-	-	-	HMMPfam_Cpn60_TCP1,superfamily_GroEL-ATPase,superfamily_SSF52029,superfamily_SSF54849
TCP1	6950	genome.wustl.edu	37	6	160205087	160205087	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_030752.2	-1	reviewed	p.R228I	1.000	310	0%	440	44.5%	144	57.6%	benign(0.003)	tolerated(0.06)	neutral(0.323)	HMMPfam_Cpn60_TCP1,superfamily_GroEL-ATPase,superfamily_SSF52029,superfamily_SSF54849
IGF2R	3482	genome.wustl.edu	37	6	160496999	160496999	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000876.2	+1	reviewed	p.A1763T	0.047	159	0%	188	51.6%	173	51.4%	benign(0)	tolerated(0.71)	neutral(0.002)	HMMPfam_CIMR,superfamily_Mannose 6-phosphate receptor domain
TTLL2	83887	genome.wustl.edu	37	6	167738702	167738702	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_031949.4	+1	validated	p.A14V	0.000	60	0%	98	54.1%	0	-	unknown(0)	-	-	NULL
MLLT4	4301	genome.wustl.edu	37	6	168344128	168344128	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001040001.1	+1	validated	p.R1063Q	0.996	377	0%	469	45%	220	53.6%	benign(0.088)	tolerated(0.73)	neutral(0.008)	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ
C6orf70	55780	genome.wustl.edu	37	6	170175417	170175417	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018341.1	+1	validated	p.E457*	0.000	130	0%	145	42.1%	9	0%	-	-	-	NULL
LINC00242	401288	genome.wustl.edu	37	6	170190564	170190564	+	RNA	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NR_026781.1	-1	validated	NULL	0.000	126	0%	177	20.9%	0	-	-	-	-	-
FAM120B	84498	genome.wustl.edu	37	6	170704611	170704611	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032448.1	+1	provisional	p.T879M	0.003	70	0%	111	37.8%	51	47%	probably_damaging(0.998)	tolerated(0.06)	deleterious(0.797)	NULL
TBP	6908	genome.wustl.edu	37	6	170876051	170876051	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003194.4	+1	reviewed	p.A211T	0.998	183	0%	231	49.4%	14	28.5%	unknown(0)	deleterious(0.01)	-	HMMPfam_TBP,PatternScan_TFIID,superfamily_TFIID_C/glycos_N
PDCD2	5134	genome.wustl.edu	37	6	170887961	170887961	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002598.2	-1	reviewed	p.R287I	0.996	213	0%	300	17.3%	30	16.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PDCD2_C
SUN1	23353	genome.wustl.edu	37	7	892519	892519	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000457861	+1	known	p.E75*	0.000	163	0%	206	19.9%	46	8.6%	possibly_damaging(0.942)	tolerated(0.07)	deleterious(0.706)	NULL
SUN1	23353	genome.wustl.edu	37	7	909009	909009	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001130965.2	+1	reviewed	p.C668	1.000	119	0%	162	50.6%	66	34.8%	-	-	-	HMMPfam_Sad1_UNC
CYP2W1	54905	genome.wustl.edu	37	7	1024866	1024866	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017781.2	+1	reviewed	p.F184	0.872	45	0%	49	44.9%	0	-	-	-	-	HMMPfam_p450,superfamily_Cytochrome_P450
CYP2W1	54905	genome.wustl.edu	37	7	1024874	1024874	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017781.2	+1	reviewed	p.R187Q	1.000	67	0%	66	48.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_p450,superfamily_Cytochrome_P450
ELFN1	392617	genome.wustl.edu	37	7	1784665	1784665	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001128636.2	+1	validated	p.E145K	1.000	20	0%	18	61.1%	2	0%	-	-	-	HMMSmart_SM00369,superfamily_L domain-like
BRAT1	221927	genome.wustl.edu	37	7	2580628	2580628	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000382467	-1	known	p.R427W	0.141	18	0%	18	66.7%	18	44.4%	-	-	-	NULL
GNA12	2768	genome.wustl.edu	37	7	2834685	2834685	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007353.2	-1	validated	p.F134	0.372	109	0%	111	42.3%	49	38.7%	-	-	-	HMMPfam_G-alpha,superfamily_Transducn_insert,superfamily_SSF52540
CARD11	84433	genome.wustl.edu	37	7	2951852	2951852	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032415.3	-1	validated	p.A1033V	0.997	209	0%	255	43.9%	2	0%	benign(0)	tolerated(0.17)	neutral(0.059)	superfamily_SSF52540
CARD11	84433	genome.wustl.edu	37	7	2998266	2998266	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032415.3	-1	validated	e1-1	0.088	62	0%	90	30%	0	-	-	-	-	-
KIAA0415	9907	genome.wustl.edu	37	7	4823396	4823396	+	Silent	SNP	C	C	T	rs146665638	by1000genomes	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014855.1	+1	validated	p.S196	0.090	22	0%	20	50%	11	54.5%	-	-	-	NULL
PAPOLB	56903	genome.wustl.edu	37	7	4900675	4900675	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020144.4	-1	validated	p.R256I	1.000	149	0%	161	37.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PAP_central,superfamily_SSF81631
PAPOLB	56903	genome.wustl.edu	37	7	4900991	4900991	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020144.4	-1	validated	p.E151K	0.998	154	0%	193	49.2%	0	-	probably_damaging(0.997)	tolerated(0.08)	deleterious(0.766)	HMMPfam_NTP_transf_2,HMMPfam_PAP_central,superfamily_SSF81301
TNRC18	84629	genome.wustl.edu	37	7	5410351	5410351	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001080495.2	-1	provisional	p.E1292*	0.018	7	0.000	14	0.429	42	14.2%	-	-	-	NULL
TNRC18	84629	genome.wustl.edu	37	7	5434080	5434080	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001080495.2	-1	provisional	p.A112T	0.843	44	0%	64	39.1%	20	75%	benign(0.164)	tolerated(0.2)	neutral(0.064)	NULL
FBXL18	80028	genome.wustl.edu	37	7	5545075	5545075	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024963.4	-1	validated	p.I69V	0.728	104	1%	124	40.3%	8	50%	benign(0)	tolerated(1)	-	HMMPfam_F-box,HMMSmart_FBOX,superfamily_SSF81383
RNF216	54476	genome.wustl.edu	37	7	5752360	5752360	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_207111.2	-1	reviewed	p.A656	0.748	35	0%	47	31.9%	36	30.5%	-	-	-	HMMSmart_IBR,superfamily_SSF57850
USP42	84132	genome.wustl.edu	37	7	6178812	6178812	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032172.2	+1	validated	p.N215H	1.000	90	0%	120	36.7%	14	21.4%	possibly_damaging(0.563)	tolerated(0.24)	neutral(0.230)	HMMPfam_UCH,superfamily_SSF54001
ZNF12	7559	genome.wustl.edu	37	7	6730837	6730837	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016265.3	-1	reviewed	p.C579Y	0.965	184	0%	200	37%	7	28.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF12	7559	genome.wustl.edu	37	7	6731942	6731942	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016265.3	-1	reviewed	p.R211C	0.982	131	0%	166	42.2%	0	-	possibly_damaging(0.869)	deleterious(0.01)	deleterious(0.743)	NULL
CCZ1B	221960	genome.wustl.edu	37	7	6845639	6845639	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_198097.2	-1	predicted	p.I328	0.987	1077	0%	1308	24.2%	53	35.8%	-	-	-	HMMPfam_DUF2049
LOC100131257	100131257	genome.wustl.edu	37	7	7118240	7118240	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_001716696.1	-1	model	p.D322Y	0.037	76	0%	87	43.7%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
COL28A1	340267	genome.wustl.edu	37	7	7412972	7412972	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001037763.2	-1	validated	p.F855L	0.730	127	0%	170	42.4%	8	62.5%	benign(0.066)	tolerated(0.43)	neutral(0.018)	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
THSD7A	221981	genome.wustl.edu	37	7	11676214	11676214	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015204.2	-1	validated	p.I189V	1.000	105	0%	149	14.8%	5	0%	probably_damaging(0.982)	tolerated(0.29)	neutral(0.456)	NULL
VWDE	221806	genome.wustl.edu	37	7	12391310	12391310	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001135924.1	-1	provisional	p.T1259A	0.008	197	0%	259	42.9%	0	-	possibly_damaging(0.649)	tolerated(0.57)	neutral(0.234)	NULL
VWDE	221806	genome.wustl.edu	37	7	12414691	12414691	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001135924.1	-1	provisional	p.Q396R	0.136	117	0%	156	43.6%	0	-	benign(0.011)	tolerated(0.48)	neutral(0.011)	NULL
ARL4A	10124	genome.wustl.edu	37	7	12728194	12728194	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001037164.1	+1	reviewed	p.V105	0.751	164	0%	225	40.4%	5	40%	-	-	-	HMMSmart_SM00173,HMMSmart_SM00175,HMMSmart_SM00178,HMMSmart_SM00177,HMMPfam_Arf,superfamily_P-loop containing nucleoside triphosphate hydrolases
ETV1	2115	genome.wustl.edu	37	7	13949261	13949261	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004956.4	-1	validated	p.F312	0.755	170	0%	225	40.4%	0	-	-	-	-	HMMPfam_ETS_PEA3_N
DGKB	1607	genome.wustl.edu	37	7	14384953	14384953	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004080.2	-1	reviewed	p.K634N	1.000	233	0%	328	46.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DAGK_acc,HMMSmart_SM00045
DGKB	1607	genome.wustl.edu	37	7	14775741	14775741	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004080.2	-1	reviewed	p.L83F	1.000	143	0%	186	47.3%	0	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	superfamily_EF-hand
AGMO	392636	genome.wustl.edu	37	7	15427115	15427115	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001004320.1	-1	provisional	p.F291	1.000	161	0.6%	164	48.2%	0	-	-	-	-	NULL
AHR	196	genome.wustl.edu	37	7	17379759	17379759	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001621.4	+1	validated	p.S770	0.064	106	0%	141	27%	42	14.2%	-	-	-	NULL
AHR	196	genome.wustl.edu	37	7	17382550	17382550	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001621.4	+1	validated	p.Q803H	1.000	286	0.3%	377	47.2%	5	60%	possibly_damaging(0.76)	deleterious(0)	deleterious(0.726)	NULL
TWIST1	7291	genome.wustl.edu	37	7	19156507	19156507	+	Missense_Mutation	SNP	A	A	C	rs79988208		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000474.3	-1	reviewed	p.I146M	1.000	98	0%	95	40%	11	18.1%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_HLH,HMMSmart_HLH,superfamily_HLH_basic
TWISTNB	221830	genome.wustl.edu	37	7	19744536	19744536	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001002926.1	-1	validated	p.G88S	1.000	133	0%	133	48.1%	5	80%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	HMMPfam_RNA_pol_Rpb7_N
MACC1	346389	genome.wustl.edu	37	7	20198624	20198624	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_182762.3	-1	validated	p.E454*	1.000	179	0%	236	21.6%	0	-	-	-	-	NULL
ABCB5	340273	genome.wustl.edu	37	7	20767947	20767947	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_178559.5	+1	validated	p.S467	1.000	221	0%	264	42%	0	-	-	-	-	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
ABCB5	340273	genome.wustl.edu	37	7	20792982	20792982	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_178559.5	+1	validated	e15-1	1.000	99	0%	168	45.8%	0	-	-	-	-	-
DNAH11	8701	genome.wustl.edu	37	7	21641127	21641127	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003777.3	+1	reviewed	p.R1180I	1.000	146	0%	172	43.6%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
DNAH11	8701	genome.wustl.edu	37	7	21698460	21698460	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003777.3	+1	reviewed	p.T1718	0.039	117	0%	117	40.2%	4	50%	-	-	-	HMMPfam_DHC_N2
DNAH11	8701	genome.wustl.edu	37	7	21751342	21751342	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003777.3	+1	reviewed	p.A2290T	1.000	122	0%	123	46.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH11	8701	genome.wustl.edu	37	7	21818607	21818607	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003777.3	+1	reviewed	p.Q3130R	1.000	195	0%	227	40.5%	1	100%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH11	8701	genome.wustl.edu	37	7	21827195	21827195	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003777.3	+1	reviewed	p.F3313L	1.000	114	0%	178	41%	0	-	possibly_damaging(0.903)	deleterious(0.01)	deleterious(0.764)	NULL
DNAH11	8701	genome.wustl.edu	37	7	21857911	21857911	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003777.3	+1	reviewed	p.P3556S	1.000	261	0%	322	12.1%	1	0%	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	NULL
DNAH11	8701	genome.wustl.edu	37	7	21920330	21920330	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003777.3	+1	reviewed	p.E4076G	1.000	175	0%	233	13.7%	0	-	probably_damaging(0.976)	deleterious(0)	deleterious(0.863)	HMMPfam_Dynein_heavy
RAPGEF5	9771	genome.wustl.edu	37	7	22348031	22348031	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012294.3	-1	validated	p.E50*	0.970	193	0%	293	11.6%	3	0%	-	-	-	"superfamily_""Winged helix"" DNA-binding domain"
ENSG00000105889	0	genome.wustl.edu	37	7	22534480	22534480	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000441815	-1	known	p.E146*	0.992	497	0%	498	21.1%	0	-	-	-	-	NULL
IL6	3569	genome.wustl.edu	37	7	22767143	22767143	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000600.3	+1	reviewed	p.E34*	0.011	121	0%	123	35.8%	0	-	-	-	-	NULL
NUPL2	11097	genome.wustl.edu	37	7	23236306	23236306	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007342.2	+1	validated	p.S177Y	0.977	311	0.3%	381	44.6%	6	16.6%	probably_damaging(0.982)	deleterious(0.02)	deleterious(0.809)	NULL
IGF2BP3	10643	genome.wustl.edu	37	7	23383377	23383377	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006547.2	-1	reviewed	p.K346T	1.000	372	0%	483	43.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00322,superfamily_Eukaryotic type KH-domain (KH-domain type I)
STK31	56164	genome.wustl.edu	37	7	23775209	23775209	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_031414.3	+1	reviewed	p.I179S	1.000	150	0%	203	41.9%	0	-	benign(0.002)	deleterious(0.03)	neutral(0.364)	NULL
STK31	56164	genome.wustl.edu	37	7	23811831	23811831	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_031414.3	+1	reviewed	p.K633N	1.000	135	0%	150	40%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
STK31	56164	genome.wustl.edu	37	7	23826129	23826129	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_031414.3	+1	reviewed	p.G759	1.000	117	0%	142	26.8%	2	50%	-	-	-	HMMSmart_SM00220
STK31	56164	genome.wustl.edu	37	7	23871808	23871808	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_031414.3	+1	reviewed	p.M961I	1.000	390	0.3%	462	41.3%	0	-	benign(0)	tolerated(0.08)	neutral(0.300)	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
MPP6	51678	genome.wustl.edu	37	7	24689294	24689294	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016447.2	+1	provisional	p.E112*	1.000	243	0%	292	43.5%	2	0%	-	-	-	superfamily_PDZ domain-like
NFE2L3	9603	genome.wustl.edu	37	7	26224306	26224306	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004289.6	+1	reviewed	p.D330Y	0.845	181	0%	220	47.7%	5	40%	benign(0.255)	deleterious(0.01)	neutral(0.432)	NULL
C7orf71	285941	genome.wustl.edu	37	7	26686086	26686086	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001145531.1	+1	predicted	p.P146H	0.856	192	0%	239	41.8%	0	-	probably_damaging(0.984)	-	-	NULL
HOXA6	3203	genome.wustl.edu	37	7	27185314	27185314	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024014.2	-1	reviewed	p.P222H	1.000	155	0%	203	41.4%	7	28.5%	possibly_damaging(0.688)	tolerated(0.12)	deleterious(0.506)	superfamily_Homeodomain-like
HOXA9	3205	genome.wustl.edu	37	7	27209135	27209135	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000354032	-1	known	p.L44P	1.000	20	0%	61	32.8%	12	41.6%	unknown(0)	deleterious(0)	-	NULL
TAX1BP1	8887	genome.wustl.edu	37	7	27809446	27809446	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006024.5	+1	validated	p.E202G	0.863	106	0.9%	160	46.3%	28	60.7%	possibly_damaging(0.897)	deleterious(0.01)	deleterious(0.760)	HMMPfam_CALCOCO1
CREB5	9586	genome.wustl.edu	37	7	28547272	28547272	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_182898.2	+1	reviewed	p.E70K	1.000	65	0%	106	11.3%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
SCRN1	9805	genome.wustl.edu	37	7	29976225	29976225	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001145514.1	-1	reviewed	p.Q304H	0.997	152	0%	190	48.4%	30	60%	possibly_damaging(0.944)	deleterious(0.05)	deleterious(0.734)	NULL
SCRN1	9805	genome.wustl.edu	37	7	30029821	30029821	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000427249	-1	known	p.D29N	0.000	161	0.6%	246	54.1%	0	-	-	-	-	NULL
GARS	2617	genome.wustl.edu	37	7	30651816	30651816	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002047.2	+1	reviewed	p.S329Y	1.000	129	0%	182	43.4%	4	0%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_tRNA-synt_2b,superfamily_Class II aaRS and biotin synthetases
INMT	11185	genome.wustl.edu	37	7	30793430	30793430	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006774.4	+1	reviewed	p.D80Y	0.845	96	0%	148	43.2%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_NNMT_PNMT_TEMT,superfamily_SSF53335
FAM188B	84182	genome.wustl.edu	37	7	30825416	30825416	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032222.2	+1	validated	p.R157	0.082	138	0%	171	36.8%	3	33.3%	-	-	-	NULL
GHRHR	2692	genome.wustl.edu	37	7	31013600	31013600	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000823.3	+1	reviewed	p.V200I	0.993	64	0%	79	39.2%	0	-	benign(0.005)	tolerated(0.07)	neutral(0.319)	HMMPfam_7tm_2,superfamily_SSF81321
FKBP9	11328	genome.wustl.edu	37	7	33016021	33016021	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007270.3	+1	validated	p.G205*	1.000	538	0%	557	42.7%	46	6.5%	-	-	-	HMMPfam_FKBP_C,superfamily_SSF54534
FKBP9	11328	genome.wustl.edu	37	7	33039822	33039822	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007270.3	+1	validated	p.K441T	1.000	538	0%	621	36.4%	71	77.4%	probably_damaging(0.973)	deleterious(0)	deleterious(0.859)	HMMPfam_FKBP_C,superfamily_SSF54534
BBS9	27241	genome.wustl.edu	37	7	33376216	33376216	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_198428.2	+1	reviewed	p.D394Y	1.000	88	0%	123	35.8%	3	0%	benign(0.177)	deleterious(0.01)	neutral(0.422)	NULL
ANLN	54443	genome.wustl.edu	37	7	36447459	36447459	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018685.2	+1	validated	p.S330	0.000	183	0%	216	46.8%	4	75%	-	-	-	NULL
GPR141	353345	genome.wustl.edu	37	7	37780794	37780794	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_181791.1	+1	provisional	p.E267K	1.000	398	0%	467	39.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
TRGV8	6982	genome.wustl.edu	37	7	38370043	38370043	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000390343	-1	known	p.K85	0.047	226	0%	300	37.7%	0	-	-	-	-	HMMPfam_V-set,superfamily_SSF48726
AMPH	273	genome.wustl.edu	37	7	38534107	38534107	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001635.2	-1	reviewed	p.K76Q	1.000	214	0%	280	28.2%	1	0%	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	HMMPfam_BAR,HMMSmart_SM00721
CDK13	8621	genome.wustl.edu	37	7	40132607	40132607	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003718.4	+1	reviewed	p.S1153	0.976	150	0%	220	50%	23	34.7%	-	-	-	NULL
GLI3	2737	genome.wustl.edu	37	7	42004153	42004153	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000168.5	-1	reviewed	p.F1506	1.000	145	0%	188	12.2%	9	0%	-	-	-	NULL
GLI3	2737	genome.wustl.edu	37	7	42262770	42262770	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000168.5	-1	reviewed	p.D28A	1.000	276	0%	333	47.4%	3	0%	probably_damaging(0.987)	deleterious(0.01)	deleterious(0.842)	NULL
C7orf25	79020	genome.wustl.edu	37	7	42949502	42949502	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001099858.1	-1	validated	p.R391Q	0.997	144	0%	165	43.6%	7	57.1%	possibly_damaging(0.756)	tolerated(0.07)	deleterious(0.598)	HMMPfam_DUF1308
PSMA2	5683	genome.wustl.edu	37	7	42961482	42961482	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002787.4	-1	reviewed	p.N169D	1.000	194	0%	249	43%	127	41.7%	benign(0.01)	tolerated(0.1)	neutral(0.287)	HMMPfam_Proteasome,superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases)
URGCP	55665	genome.wustl.edu	37	7	43916866	43916866	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001077663.1	-1	validated	p.L732	0.002	34	0%	27	33.3%	15	73.3%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
UBE2D4	51619	genome.wustl.edu	37	7	43988248	43988248	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015983.2	+1	provisional	p.K72N	1.000	190	0%	232	48.7%	36	47.2%	benign(0.134)	deleterious(0)	neutral(0.456)	HMMPfam_UQ_con,HMMSmart_SM00212,superfamily_UBC-like
DBNL	28988	genome.wustl.edu	37	7	44098069	44098069	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001122956.1	+1	validated	p.R249Q	0.001	152	0%	234	42.7%	171	35.6%	benign(0.018)	tolerated(0.15)	neutral(0.241)	NULL
CAMK2B	816	genome.wustl.edu	37	7	44260222	44260222	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001220.4	-1	reviewed	p.F587	0.996	63	0%	75	41.3%	2	50%	-	-	-	HMMPfam_CaMKII_AD,superfamily_SSF54427
MYO1G	64005	genome.wustl.edu	37	7	45007499	45007499	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033054.2	-1	validated	p.R545W	1.000	116	0%	119	48.7%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYO1G	64005	genome.wustl.edu	37	7	45010469	45010469	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033054.2	-1	validated	p.A346S	0.010	33	0%	54	40.7%	4	0%	benign(0.004)	tolerated(0.76)	neutral(0.001)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
IGFBP1	3484	genome.wustl.edu	37	7	45931560	45931560	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000596.2	+1	reviewed	p.V183	0.564	151	0%	153	39.9%	0	-	-	-	-	HMMPfam_Thyroglobulin_1,superfamily_Thyroglobulin type-1 domain
TNS3	64759	genome.wustl.edu	37	7	47333332	47333332	+	Missense_Mutation	SNP	G	G	T	rs75253453	byCluster;byFrequency;by1000genomes	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_022748.10	-1	validated	p.F1257L	0.008	195	0%	256	42.6%	40	32.5%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain
PKD1L1	168507	genome.wustl.edu	37	7	47860724	47860724	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_138295.2	-1	reviewed	p.F2305	0.000	255	0%	286	11.5%	0	-	-	-	-	NULL
UPP1	7378	genome.wustl.edu	37	7	48139305	48139305	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003364.2	+1	validated	p.K28R	0.001	316	0%	398	47.7%	5	60%	benign(0.003)	tolerated(0.6)	neutral(0.004)	NULL
ABCA13	154664	genome.wustl.edu	37	7	48316036	48316036	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152701.3	+1	reviewed	p.R2258I	0.000	23	0%	32	56.2%	0	-	probably_damaging(0.979)	-	-	NULL
ABCA13	154664	genome.wustl.edu	37	7	48375098	48375098	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152701.3	+1	reviewed	p.R3360I	0.048	233	0%	207	45.9%	0	-	benign(0.327)	-	-	NULL
IKZF1	10320	genome.wustl.edu	37	7	50468296	50468296	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000331340	+1	known	p.R511*	0.999	14	0%	26	46.2%	2	0%	-	-	-	HMMSmart_SM00355
GRB10	2887	genome.wustl.edu	37	7	50673038	50673038	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005311.4	-1	reviewed	p.E446D	0.995	117	0%	173	48%	36	44.4%	benign(0.012)	tolerated(0.6)	neutral(0.005)	HMMPfam_BPS
SEC61G	23480	genome.wustl.edu	37	7	54825203	54825203	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001012456.1	-1	reviewed	p.K27E	1.000	250	0%	315	47.3%	123	47.1%	benign(0.011)	deleterious(0.01)	neutral(0.406)	HMMPfam_SecE,PatternScan_SECE_SEC61G,superfamily_Preprotein translocase SecE subunit
LOC441228	441228	genome.wustl.edu	37	7	56358973	56358973	+	RNA	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XR_016387.3	+1	model	NULL	1.000	270	0%	339	39.8%	4	0%	-	-	-	-
ZNF479	90827	genome.wustl.edu	37	7	57187691	57187691	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033273.1	-1	provisional	p.S477	0.000	124	0%	191	37.2%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF479	90827	genome.wustl.edu	37	7	57188759	57188759	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033273.1	-1	provisional	p.E121D	0.002	281	0%	403	38%	1	100%	benign(0.008)	tolerated(0.37)	neutral(0.019)	NULL
ZNF716	441234	genome.wustl.edu	37	7	57529065	57529065	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000420713	+1	known	p.E300*	0.554	77	0%	103	43.7%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF716	441234	genome.wustl.edu	37	7	57529102	57529102	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000420713	+1	known	p.T312I	0.000	69	0%	106	18.9%	0	-	benign(0.072)	tolerated(0.27)	neutral(0.038)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF716	441234	genome.wustl.edu	37	7	57529585	57529585	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_002342727.1	+1	model	p.F390C	0.585	130	0%	151	46.4%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF736	728927	genome.wustl.edu	37	7	63808608	63808608	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000423484	+1	known	p.C123R	0.004	295	0%	342	41.2%	0	-	probably_damaging(0.96)	tolerated(0.25)	neutral(0.440)	NULL
ZNF736	728927	genome.wustl.edu	37	7	63809384	63809384	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000423484	+1	known	p.F381L	0.000	66	0%	79	43%	0	-	benign(0)	tolerated(0.64)	neutral(0.003)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
TYW1	55253	genome.wustl.edu	37	7	66563683	66563683	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018264.2	+1	validated	p.A514T	1.000	250	0%	315	46%	9	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Radical_SAM,superfamily_Radical SAM enzymes
CALN1	83698	genome.wustl.edu	37	7	71275350	71275350	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_031468.3	-1	validated	p.S210L	1.000	231	0%	314	43.9%	0	-	benign(0.094)	deleterious(0)	neutral(0.452)	NULL
NSUN5	55695	genome.wustl.edu	37	7	72718015	72718015	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_148956.2	-1	reviewed	p.L318P	0.811	27	0%	53	45.3%	36	55.5%	benign(0.005)	tolerated(0.2)	neutral(0.049)	superfamily_SSF53335
WBSCR22	114049	genome.wustl.edu	37	7	73111952	73111952	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000442099	+1	known	p.R100*	0.000	74	0%	128	36.7%	243	47.7%	benign(0)	tolerated(0.31)	neutral(0.027)	NULL
LIMK1	3984	genome.wustl.edu	37	7	73535593	73535593	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002314.2	+1	reviewed	p.E636K	0.965	33	0%	21	52.4%	33	45.4%	benign(0.07)	tolerated(0.15)	neutral(0.246)	NULL
GTF2IRD2	84163	genome.wustl.edu	37	7	74212066	74212066	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_173537.2	-1	validated	p.I595	0.873	184	0%	241	36.9%	10	30%	-	-	-	NULL
GTF2IRD2B	389524	genome.wustl.edu	37	7	74524847	74524847	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001003795.2	+1	reviewed	p.E31K	0.973	316	0%	380	26.3%	50	24%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	NULL
TRIM73	375593	genome.wustl.edu	37	7	75034121	75034121	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_198924.2	+1	provisional	e3-1	0.997	72	0%	68	29.4%	2	0%	-	-	-	-
CCDC146	57639	genome.wustl.edu	37	7	76903811	76903811	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020879.2	+1	validated	p.E428K	0.736	93	0%	103	35.9%	0	-	benign(0.011)	tolerated(0.82)	neutral(0.001)	NULL
PION	54103	genome.wustl.edu	37	7	76957930	76957930	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017439.3	-1	validated	p.R586	0.007	209	0%	253	43.9%	3	66.6%	-	-	-	NULL
PION	54103	genome.wustl.edu	37	7	77010672	77010672	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017439.3	-1	validated	e8-1	1.000	198	0.5%	247	36%	0	-	-	-	-	-
MAGI2	9863	genome.wustl.edu	37	7	77973133	77973133	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012301.3	-1	reviewed	p.P457L	1.000	222	0%	310	44.2%	0	-	benign(0.012)	tolerated(0.48)	neutral(0.011)	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
MAGI2	9863	genome.wustl.edu	37	7	77973155	77973155	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012301.3	-1	reviewed	p.L450M	1.000	256	0%	327	23.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
MAGI2	9863	genome.wustl.edu	37	7	78150918	78150918	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012301.3	-1	reviewed	p.L195I	0.938	370	0%	458	41.3%	0	-	benign(0.206)	tolerated(0.4)	neutral(0.036)	HMMSmart_SM00072
PCLO	27445	genome.wustl.edu	37	7	82544697	82544697	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033026.5	-1	validated	p.K4202T	1.000	182	0%	213	14.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PCLO	27445	genome.wustl.edu	37	7	82581432	82581432	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033026.5	-1	validated	p.K2946R	1.000	104	0%	136	41.9%	0	-	possibly_damaging(0.829)	-	-	NULL
PCLO	27445	genome.wustl.edu	37	7	82595617	82595617	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033026.5	-1	validated	p.E1163*	0.984	396	0.3%	442	41%	0	-	-	-	-	NULL
PCLO	27445	genome.wustl.edu	37	7	82595743	82595743	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033026.5	-1	validated	p.D1121Y	1.000	240	0%	281	44.1%	0	-	probably_damaging(1)	-	-	superfamily_FYVE/PHD zinc finger
PCLO	27445	genome.wustl.edu	37	7	82785548	82785548	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033026.5	-1	validated	p.E137*	1.000	185	0%	199	47.2%	0	-	-	-	-	NULL
SEMA3A	10371	genome.wustl.edu	37	7	83592584	83592584	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006080.2	-1	reviewed	p.P599	0.027	249	0%	334	41.6%	1	0%	-	-	-	HMMSmart_IG,HMMPfam_ig,superfamily_SSF48726
SEMA3D	223117	genome.wustl.edu	37	7	84629153	84629153	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152754.2	-1	validated	p.T646M	1.000	112	0%	152	20.4%	5	20%	possibly_damaging(0.949)	tolerated(0.15)	deleterious(0.634)	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
GRM3	2913	genome.wustl.edu	37	7	86416107	86416107	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000840.2	+1	reviewed	p.F333	0.995	39	0%	57	45.6%	0	-	-	-	-	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
GRM3	2913	genome.wustl.edu	37	7	86493617	86493617	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000439827	+1	known	p.A507T	0.932	346	0%	503	47.7%	0	-	unknown(0)	-	-	NULL
ABCB1	5243	genome.wustl.edu	37	7	87214830	87214830	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000927.3	-1	reviewed	p.R95I	0.000	129	0%	180	36.7%	0	-	benign(0)	tolerated(0.33)	neutral(0.024)	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
RUNDC3B	154661	genome.wustl.edu	37	7	87280143	87280143	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_138290.2	+1	validated	p.S43Y	1.000	224	0%	300	47%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RUNDC3B	154661	genome.wustl.edu	37	7	87399920	87399920	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_138290.2	+1	validated	p.E235A	1.000	98	0%	124	41.9%	2	0%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
SLC25A40	55972	genome.wustl.edu	37	7	87465581	87465581	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018843.2	-1	validated	p.R334	0.000	109	0%	132	18.9%	3	0%	-	-	-	NULL
SLC25A40	55972	genome.wustl.edu	37	7	87476353	87476353	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018843.2	-1	validated	p.R181Q	0.000	133	0%	171	40.9%	5	20%	benign(0.003)	tolerated(0.7)	neutral(0.002)	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr
STEAP4	79689	genome.wustl.edu	37	7	87913503	87913503	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024636.2	-1	validated	p.G28C	1.000	102	0%	121	44.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_F420_oxidored,superfamily_NAD(P)-binding Rossmann-fold domains
C7orf62	219557	genome.wustl.edu	37	7	88423553	88423553	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152706.2	-1	predicted	p.R235I	0.038	248	0%	321	42.7%	0	-	benign(0.314)	tolerated(0.08)	neutral(0.398)	NULL
C7orf62	219557	genome.wustl.edu	37	7	88423926	88423926	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152706.2	-1	predicted	p.L111I	0.620	109	0%	114	36%	0	-	possibly_damaging(0.851)	tolerated(0.08)	deleterious(0.627)	NULL
ZNF804B	219578	genome.wustl.edu	37	7	88963161	88963161	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_181646.2	+1	provisional	p.E289*	1.000	98	0%	92	35.9%	0	-	-	-	-	NULL
STEAP1	26872	genome.wustl.edu	37	7	89790239	89790239	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012449.2	+1	reviewed	p.P69T	1.000	191	0%	251	20.7%	2	0%	possibly_damaging(0.607)	tolerated(0.2)	neutral(0.260)	NULL
C7orf63	79846	genome.wustl.edu	37	7	89887435	89887435	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001039706.2	+1	validated	p.L68	0.965	244	0%	297	40.4%	0	-	-	-	-	superfamily_ARM-type_fold
C7orf63	79846	genome.wustl.edu	37	7	89915595	89915595	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001039706.2	+1	validated	p.G513E	0.997	127	0%	149	46.3%	0	-	benign(0.004)	tolerated(0.93)	-	superfamily_ARM-type_fold
C7orf63	79846	genome.wustl.edu	37	7	89929311	89929311	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001039706.2	+1	validated	p.K663T	1.000	331	0%	401	46.4%	1	0%	possibly_damaging(0.833)	tolerated(0.07)	deleterious(0.637)	NULL
CDK14	5218	genome.wustl.edu	37	7	90377037	90377037	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012395.2	+1	validated	p.K119N	1.000	259	0%	361	36.3%	0	-	possibly_damaging(0.722)	deleterious(0)	deleterious(0.707)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
AKAP9	10142	genome.wustl.edu	37	7	91625110	91625110	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005751.4	+1	reviewed	p.E309A	1.000	90	0%	121	28.9%	0	-	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	NULL
AKAP9	10142	genome.wustl.edu	37	7	91630473	91630473	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005751.4	+1	reviewed	p.F414	1.000	81	0%	99	39.4%	4	75%	-	-	-	NULL
AKAP9	10142	genome.wustl.edu	37	7	91630925	91630925	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005751.4	+1	reviewed	p.L565R	1.000	99	0%	112	52.7%	1	0%	probably_damaging(0.999)	tolerated(0.23)	deleterious(0.532)	NULL
AKAP9	10142	genome.wustl.edu	37	7	91726345	91726345	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005751.4	+1	reviewed	p.R3358C	0.991	138	0%	176	39.8%	7	71.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
AKAP9	10142	genome.wustl.edu	37	7	91737905	91737905	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005751.4	+1	reviewed	p.R3882W	1.000	148	0%	184	47.3%	14	35.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ENSG00000240720	0	genome.wustl.edu	37	7	91793060	91793060	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000430130	-1	known	p.L486S	0.115	73	0%	91	47.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00369,HMMSmart_SM00364,superfamily_L domain-like
ENSG00000240720	0	genome.wustl.edu	37	7	91793492	91793492	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000430130	-1	known	p.A342G	1.000	59	0%	78	14.1%	0	-	probably_damaging(0.969)	deleterious(0.04)	deleterious(0.760)	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like
ANKIB1	54467	genome.wustl.edu	37	7	91957139	91957139	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_019004.1	+1	validated	p.D238Y	1.000	247	0.4%	307	41.7%	8	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ANK
SAMD9L	219285	genome.wustl.edu	37	7	92762829	92762829	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152703.2	-1	validated	p.H819R	0.001	110	0%	129	41.9%	0	-	benign(0.024)	tolerated(0.08)	neutral(0.301)	NULL
SAMD9L	219285	genome.wustl.edu	37	7	92763756	92763756	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152703.2	-1	validated	p.K510T	0.173	114	0%	117	43.6%	0	-	possibly_damaging(0.793)	deleterious(0)	deleterious(0.742)	NULL
HEPACAM2	253012	genome.wustl.edu	37	7	92837974	92837974	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001039372.1	-1	provisional	p.M311L	0.007	175	0%	307	19.5%	0	-	benign(0)	tolerated(0.88)	-	HMMSmart_SM00409,superfamily_Immunoglobulin
SGCE	8910	genome.wustl.edu	37	7	94217116	94217116	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001099400.1	-1	reviewed	p.R427C	1.000	131	0%	147	21.1%	0	-	benign(0.001)	tolerated(0.14)	neutral(0.249)	NULL
SGCE	8910	genome.wustl.edu	37	7	94228225	94228225	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001099401.1	-1	reviewed	p.R372Q	1.000	237	0%	364	17%	3	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Sarcoglycan_2
PPP1R9A	55607	genome.wustl.edu	37	7	94540512	94540512	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017650.2	+1	validated	p.E363*	0.000	135	0%	215	18.6%	1	0%	-	-	-	NULL
PON2	5445	genome.wustl.edu	37	7	95041658	95041658	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000305.2	-1	reviewed	p.F111L	0.998	356	0%	446	40.6%	22	50%	possibly_damaging(0.844)	tolerated(0.12)	deleterious(0.584)	superfamily_SSF63829
PDK4	5166	genome.wustl.edu	37	7	95222230	95222230	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002612.3	-1	reviewed	p.R124Q	1.000	277	0%	336	41.1%	1	100%	possibly_damaging(0.92)	deleterious(0.02)	deleterious(0.754)	HMMPfam_BCDHK_Adom3,superfamily_alpha-ketoacid dehydrogenase kinase N-terminal domain
SLC25A13	10165	genome.wustl.edu	37	7	95926221	95926221	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014251.2	-1	reviewed	p.I20L	1.000	90	0%	136	15.4%	0	-	benign(0.169)	tolerated(0.68)	neutral(0.018)	superfamily_SSF47473
LMTK2	22853	genome.wustl.edu	37	7	97821315	97821315	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014916.3	+1	reviewed	p.S513L	0.708	42	0%	50	46%	3	66.6%	possibly_damaging(0.925)	deleterious(0)	deleterious(0.818)	NULL
BAIAP2L1	55971	genome.wustl.edu	37	7	97937172	97937172	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018842.4	-1	reviewed	p.S331L	0.992	218	0.5%	318	21.4%	54	9.2%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
TRRAP	8295	genome.wustl.edu	37	7	98508010	98508010	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003496.2	+1	validated	p.T561M	1.000	93	0%	107	45.8%	9	33.3%	probably_damaging(1)	tolerated(0.11)	deleterious(0.772)	NULL
KPNA7	402569	genome.wustl.edu	37	7	98779541	98779541	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001145715.1	-1	validated	p.L428I	0.472	92	0%	136	44.9%	0	-	benign(0.001)	tolerated(0.14)	neutral(0.249)	HMMSmart_ARM,superfamily_ARM-type_fold
ARPC1B	10095	genome.wustl.edu	37	7	98984382	98984382	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005720.2	+1	reviewed	p.E47K	1.000	89	0%	139	42.4%	442	34.1%	benign(0.073)	tolerated(0.12)	neutral(0.266)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
ZNF655	79027	genome.wustl.edu	37	7	99170700	99170700	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001083956.1	+1	reviewed	p.K358N	0.681	101	0%	133	40.6%	7	42.8%	benign(0.244)	tolerated(0.08)	neutral(0.325)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
CYP3A5	1577	genome.wustl.edu	37	7	99264634	99264634	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000777.2	-1	reviewed	p.E125K	0.975	365	0%	458	44.8%	1	100%	benign(0.002)	tolerated(0.09)	neutral(0.296)	HMMPfam_p450,superfamily_Cytochrome P450
TRIM4	89122	genome.wustl.edu	37	7	99500861	99500861	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033017.2	-1	reviewed	p.E300G	0.999	228	0%	254	20.9%	14	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
TRIM4	89122	genome.wustl.edu	37	7	99506313	99506313	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000447480	-1	known	p.E106*	0.049	421	0%	528	13.1%	2	0%	benign(0.017)	tolerated(0.36)	neutral(0.021)	NULL
TRIM4	89122	genome.wustl.edu	37	7	99514365	99514365	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033017.2	-1	reviewed	p.R144I	0.028	261	0%	342	44.7%	0	-	possibly_damaging(0.815)	tolerated(0.23)	neutral(0.349)	NULL
GJC3	349149	genome.wustl.edu	37	7	99526665	99526665	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_181538.2	-1	reviewed	p.K193N	0.995	197	0%	261	21.1%	0	-	benign(0.009)	tolerated(0.11)	neutral(0.272)	HMMPfam_Connexin_CCC
ZNF3	7551	genome.wustl.edu	37	7	99669475	99669475	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032924.3	-1	validated	p.R211Q	0.883	133	0%	173	39.3%	6	16.6%	benign(0.028)	tolerated(0.47)	neutral(0.012)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
MCM7	4176	genome.wustl.edu	37	7	99695872	99695872	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005916.3	-1	reviewed	p.T254	0.080	109	0%	150	44.7%	148	51.3%	-	-	-	HMMSmart_SM00350,superfamily_Nucleic acid-binding proteins
C7orf43	55262	genome.wustl.edu	37	7	99755304	99755304	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018275.3	-1	predicted	p.S197P	0.997	57	0%	90	13.3%	41	21.9%	benign(0.189)	tolerated(0.05)	neutral(0.363)	NULL
STAG3	10734	genome.wustl.edu	37	7	99799591	99799591	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012447.2	+1	validated	p.R774K	0.980	163	0%	263	44.1%	3	33.3%	benign(0)	tolerated(0.58)	neutral(0.005)	superfamily_ARM repeat
PVRIG	79037	genome.wustl.edu	37	7	99818869	99818869	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024070.3	+1	validated	p.R326*	0.000	25	0%	42	23.8%	1	0%	-	-	-	NULL
SPDYE3	441272	genome.wustl.edu	37	7	99917587	99917587	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001004351.4	+1	validated	p.A165T	0.016	154	1.3%	204	53.4%	1	100%	benign(0)	tolerated(0.65)	neutral(0.003)	NULL
FBXO24	26261	genome.wustl.edu	37	7	100187813	100187813	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033506.2	+1	reviewed	p.S52*	1.000	39	0%	79	38%	0	-	-	-	-	HMMPfam_F-box,HMMSmart_SM00256,superfamily_F-box domain
ZAN	7455	genome.wustl.edu	37	7	100348429	100348429	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003386.1	+1	reviewed	p.P477	0.000	41	0%	33	63.6%	0	-	-	-	-	HMMPfam_MAM,HMMSmart_SM00137
ZAN	7455	genome.wustl.edu	37	7	100350522	100350522	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003386.1	+1	reviewed	p.E932*	0.000	1267	0.1%	1184	42.7%	0	-	-	-	-	NULL
MUC17	140453	genome.wustl.edu	37	7	100678422	100678422	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001040105.1	+1	provisional	p.S1242Y	0.000	239	0%	295	44.1%	0	-	unknown(0)	-	-	NULL
MUC17	140453	genome.wustl.edu	37	7	100681428	100681428	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001040105.1	+1	provisional	p.P2244H	0.002	315	0%	394	40.9%	0	-	unknown(0)	-	-	NULL
MUC17	140453	genome.wustl.edu	37	7	100686030	100686030	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001040105.1	+1	provisional	p.S3778Y	0.001	152	0%	227	32.6%	0	-	probably_damaging(0.993)	-	-	NULL
MUC17	140453	genome.wustl.edu	37	7	100692640	100692640	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001040105.1	+1	provisional	p.V4233	0.000	282	0%	344	43.6%	0	-	-	-	-	HMMPfam_SEA,HMMSmart_SM00200,superfamily_SEA domain
TRIM56	81844	genome.wustl.edu	37	7	100732713	100732713	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_030961.1	+1	provisional	p.P707L	0.939	102	0%	122	49.2%	6	50%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	superfamily_NHL repeat
CLDN15	24146	genome.wustl.edu	37	7	100880775	100880775	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014343.2	-1	reviewed	p.R30*	0.984	142	0%	151	47.7%	18	61.1%	-	-	-	HMMPfam_PMP22_Claudin
RABL5	64792	genome.wustl.edu	37	7	100961433	100961433	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_022777.2	-1	validated	p.E60K	0.999	227	0.4%	267	45.3%	80	41.2%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	superfamily_P-loop containing nucleoside triphosphate hydrolases
CUX1	1523	genome.wustl.edu	37	7	101559470	101559470	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_181552.2	+1	reviewed	p.E36K	1.000	93	0%	118	37.3%	14	78.5%	possibly_damaging(0.715)	deleterious(0.01)	deleterious(0.665)	NULL
CUX1	1523	genome.wustl.edu	37	7	101758501	101758501	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_181552.2	+1	reviewed	p.R208*	1.000	201	0%	252	42.9%	7	0%	-	-	-	NULL
CUX1	1523	genome.wustl.edu	37	7	101758540	101758540	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_181552.2	+1	reviewed	p.E221*	1.000	225	0%	273	10.3%	10	0%	-	-	-	NULL
LRRC17	10234	genome.wustl.edu	37	7	102575091	102575091	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001031692.2	+1	validated	p.N244S	0.970	62	0%	89	36%	5	20%	benign(0.032)	tolerated(0.65)	neutral(0.005)	superfamily_RNI-like
NAPEPLD	222236	genome.wustl.edu	37	7	102755526	102755526	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001122838.1	-1	validated	p.T346N	1.000	283	0%	306	39.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF56281
RELN	5649	genome.wustl.edu	37	7	103136269	103136269	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005045.3	-1	reviewed	p.S3090	1.000	405	0.2%	540	17.4%	0	-	-	-	-	superfamily_Sialidase
RELN	5649	genome.wustl.edu	37	7	103179696	103179696	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005045.3	-1	reviewed	p.L2337I	1.000	101	0%	141	51.8%	1	0%	possibly_damaging(0.614)	tolerated(0.12)	deleterious(0.474)	NULL
RELN	5649	genome.wustl.edu	37	7	103179771	103179771	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005045.3	-1	reviewed	p.L2312I	1.000	93	0%	117	44.4%	0	-	probably_damaging(0.958)	tolerated(0.08)	deleterious(0.702)	NULL
ORC5	5001	genome.wustl.edu	37	7	103838178	103838178	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002553.2	-1	reviewed	p.E146*	1.000	191	0%	212	42%	0	-	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
MLL5	55904	genome.wustl.edu	37	7	104730515	104730515	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018682.3	+1	reviewed	p.R473H	1.000	191	0%	226	19.5%	2	0%	possibly_damaging(0.442)	tolerated(0.11)	neutral(0.416)	NULL
PUS7	54517	genome.wustl.edu	37	7	105103129	105103129	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_019042.3	-1	validated	p.R566*	1.000	292	0%	367	46.3%	6	16.6%	-	-	-	HMMPfam_TruD,superfamily_PsdUridine_synth_cat_dom
RINT1	60561	genome.wustl.edu	37	7	105204224	105204224	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021930.4	+1	validated	p.E572D	0.819	180	0%	173	38.7%	8	37.5%	benign(0.001)	tolerated(0.27)	neutral(0.034)	HMMPfam_RINT1_TIP1
PIK3CG	5294	genome.wustl.edu	37	7	106519979	106519979	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002649.2	+1	reviewed	p.V803L	1.000	173	0%	236	44.1%	0	-	probably_damaging(0.955)	tolerated(0.07)	deleterious(0.718)	superfamily_Protein kinase-like (PK-like)
COG5	10466	genome.wustl.edu	37	7	106851554	106851554	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006348.3	-1	validated	p.S793Y	1.000	134	0%	133	41.4%	35	42.8%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
DUS4L	11062	genome.wustl.edu	37	7	107211697	107211697	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_181581.1	+1	validated	p.F75C	1.000	174	0%	214	45.3%	4	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Dus,superfamily_FMN-linked oxidoreductases
BCAP29	55973	genome.wustl.edu	37	7	107262250	107262250	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000379119	+1	known	p.P289L	0.000	201	0%	207	41.1%	16	37.5%	unknown(0)	-	-	NULL
BCAP29	55973	genome.wustl.edu	37	7	107269274	107269274	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000379121	+1	known	p.A233D	0.993	262	0.4%	304	40.1%	1	100%	-	-	-	NULL
SLC26A4	5172	genome.wustl.edu	37	7	107350565	107350565	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000441.1	+1	reviewed	p.F719C	0.993	297	0%	363	17.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_STAS,superfamily_STAS
NRCAM	4897	genome.wustl.edu	37	7	107872930	107872930	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001037132.1	-1	reviewed	p.I89	1.000	91	0%	150	34%	0	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
PNPLA8	50640	genome.wustl.edu	37	7	108155557	108155557	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015723.2	-1	provisional	p.A127S	1.000	149	0%	189	45%	4	25%	benign(0.01)	tolerated(0.28)	neutral(0.032)	NULL
THAP5	168451	genome.wustl.edu	37	7	108205150	108205150	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001130475.1	-1	validated	p.L225I	0.008	102	0%	153	49.7%	1	0%	benign(0.001)	tolerated(0.29)	neutral(0.029)	NULL
DNAJB9	4189	genome.wustl.edu	37	7	108212225	108212225	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012328.1	+1	provisional	p.E19*	1.000	137	0%	169	34.9%	9	22.2%	-	-	-	superfamily_Chaperone J-domain
IMMP2L	83943	genome.wustl.edu	37	7	110603594	110603594	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032549.2	-1	provisional	p.I89	1.000	214	0%	255	38%	3	66.6%	-	-	-	superfamily_LexA/Signal peptidase,HMMPfam_Peptidase_S24
LRRN3	54674	genome.wustl.edu	37	7	110764247	110764247	+	Missense_Mutation	SNP	C	C	A	rs11979902	byHapMap	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001099658.1	+1	validated	p.F473L	0.999	108	0%	124	38.7%	0	-	possibly_damaging(0.822)	tolerated(0.2)	neutral(0.360)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
ZNF277	11179	genome.wustl.edu	37	7	111936337	111936337	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021994.2	+1	validated	p.L146I	0.996	154	0.6%	186	18.8%	0	-	probably_damaging(0.996)	tolerated(0.15)	deleterious(0.703)	NULL
C7orf60	154743	genome.wustl.edu	37	7	112462262	112462262	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152556.2	-1	validated	p.S252F	1.000	127	0%	152	43.4%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
GPR85	54329	genome.wustl.edu	37	7	112723916	112723916	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018970.6	-1	validated	p.F287L	1.000	168	0%	180	46.7%	0	-	benign(0.301)	tolerated(0.16)	neutral(0.152)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
PPP1R3A	5506	genome.wustl.edu	37	7	113518608	113518608	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002711.3	-1	reviewed	p.E847*	0.972	354	0.3%	457	11.8%	0	-	-	-	-	NULL
FOXP2	93986	genome.wustl.edu	37	7	114298281	114298281	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_148898.2	+1	reviewed	p.R501Q	1.000	197	0%	319	47%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FOXP2	93986	genome.wustl.edu	37	7	114329945	114329945	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_148898.2	+1	reviewed	p.E729D	1.000	154	0%	161	46%	0	-	unknown(0)	tolerated(0.93)	-	NULL
CAV2	858	genome.wustl.edu	37	7	116140470	116140470	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001233.3	+1	reviewed	p.L103I	0.889	150	0%	168	42.9%	14	0%	benign(0.003)	tolerated(0.17)	neutral(0.059)	HMMPfam_Caveolin
CAV1	857	genome.wustl.edu	37	7	116199070	116199070	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001753.4	+1	reviewed	p.F89S	1.000	214	0%	292	41.8%	116	11.2%	benign(0.047)	tolerated(0.1)	neutral(0.289)	HMMPfam_Caveolin
ST7	7982	genome.wustl.edu	37	7	116810958	116810958	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021908.2	+1	reviewed	p.E336*	1.000	289	0%	411	32.8%	5	0%	-	-	-	HMMPfam_ST7
CTTNBP2	83992	genome.wustl.edu	37	7	117431991	117431991	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033427.2	-1	reviewed	p.S420L	0.001	265	0%	408	44.1%	4	0%	benign(0.309)	tolerated(0.22)	neutral(0.139)	HMMPfam_CortBP2
CTTNBP2	83992	genome.wustl.edu	37	7	117432577	117432577	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033427.2	-1	reviewed	p.A225T	1.000	392	0%	529	40.1%	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_CortBP2
NAA38	51691	genome.wustl.edu	37	7	117832015	117832015	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016200.4	+1	reviewed	p.G84R	1.000	325	0%	323	45.2%	39	48.7%	benign(0.025)	deleterious(0.03)	neutral(0.365)	NULL
ANKRD7	56311	genome.wustl.edu	37	7	117876922	117876922	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_019644.3	+1	validated	p.C218	0.000	325	0%	442	48.4%	0	-	-	-	-	HMMPfam_Ank,HMMSmart_SM00248
KCND2	3751	genome.wustl.edu	37	7	119915032	119915032	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012281.2	+1	reviewed	p.D116N	1.000	26	0%	42	35.7%	1	100%	probably_damaging(0.996)	deleterious(0.05)	deleterious(0.807)	HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_POZ domain
ING3	54556	genome.wustl.edu	37	7	120609078	120609078	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_019071.2	+1	reviewed	p.R243Q	1.000	175	0%	227	45.8%	1	0%	possibly_damaging(0.928)	deleterious(0.02)	deleterious(0.758)	NULL
C7orf58	79974	genome.wustl.edu	37	7	120629731	120629731	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024913.4	+1	validated	p.L19S	1.000	171	0%	229	41.9%	2	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
C7orf58	79974	genome.wustl.edu	37	7	120906389	120906389	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024913.4	+1	validated	p.H807N	0.244	231	0%	329	46.8%	7	0%	possibly_damaging(0.624)	tolerated(0.94)	neutral(0.217)	NULL
WNT16	51384	genome.wustl.edu	37	7	120979001	120979001	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_057168.1	+1	reviewed	p.T234A	1.000	104	0%	137	41.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_wnt,HMMSmart_SM00097
PTPRZ1	5803	genome.wustl.edu	37	7	121652397	121652397	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002851.2	+1	reviewed	p.F1099L	0.150	182	0%	225	39.6%	0	-	benign(0)	tolerated(0.31)	neutral(0.027)	NULL
PTPRZ1	5803	genome.wustl.edu	37	7	121652756	121652756	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002851.2	+1	reviewed	p.S1219Y	0.292	183	0%	236	38.6%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
PTPRZ1	5803	genome.wustl.edu	37	7	121652840	121652840	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002851.2	+1	reviewed	p.S1247L	0.006	114	0%	177	45.8%	0	-	benign(0.271)	tolerated(0.82)	neutral(0.030)	NULL
CADPS2	93664	genome.wustl.edu	37	7	122130219	122130219	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017954.10	-1	reviewed	p.G590S	1.000	274	0%	392	50.5%	9	22.2%	benign(0.104)	deleterious(0.04)	neutral(0.357)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
RNF148	378925	genome.wustl.edu	37	7	122342644	122342644	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_198085.1	-1	validated	p.S54L	0.837	245	0.4%	316	36.4%	0	-	benign(0.361)	tolerated(0.66)	neutral(0.117)	superfamily_SSF52025
ASB15	142685	genome.wustl.edu	37	7	123276904	123276904	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_080928.3	+1	validated	p.R546*	1.000	120	0%	142	40.1%	0	-	-	-	-	HMMPfam_SOCS_box,HMMSmart_SM00253
LMOD2	442721	genome.wustl.edu	37	7	123303072	123303072	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_207163.1	+1	validated	p.K478Q	1.000	262	0%	296	13.9%	0	-	benign(0.085)	tolerated(0.2)	neutral(0.055)	NULL
LMOD2	442721	genome.wustl.edu	37	7	123303228	123303228	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_207163.1	+1	validated	p.R530W	1.000	64	0%	83	39.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_WH2
HYAL4	23553	genome.wustl.edu	37	7	123508736	123508736	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012269.2	+1	reviewed	p.D137Y	0.465	61	0%	95	48.4%	0	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMPfam_Glyco_hydro_56,superfamily_Glyco_hydro_cat
SPAM1	6677	genome.wustl.edu	37	7	123593975	123593975	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003117.4	+1	reviewed	p.K117N	0.000	71	0%	53	28.3%	0	-	benign(0.011)	tolerated(0.4)	neutral(0.017)	HMMPfam_Glyco_hydro_56,superfamily_Glyco_hydro_cat
GPR37	2861	genome.wustl.edu	37	7	124387098	124387098	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005302.2	-1	provisional	p.A441	0.000	175	0%	231	44.2%	27	44.4%	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
GPR37	2861	genome.wustl.edu	37	7	124404209	124404209	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005302.2	-1	provisional	p.T274	0.948	73	0%	130	48.5%	39	33.3%	-	-	-	superfamily_Family A G protein-coupled receptor-like
GRM8	2918	genome.wustl.edu	37	7	126173176	126173176	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000845.2	-1	reviewed	p.G754*	1.000	195	0%	265	40.8%	2	0%	-	-	-	HMMPfam_7tm_3
GRM8	2918	genome.wustl.edu	37	7	126542734	126542734	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000845.2	-1	reviewed	e5-1	1.000	265	0%	303	42.6%	0	-	-	-	-	-
ZNF800	168850	genome.wustl.edu	37	7	127013685	127013685	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000265827	-1	known	p.L569I	1.000	284	0.4%	390	40.5%	1	100%	probably_damaging(0.998)	tolerated(0.22)	deleterious(0.516)	NULL
ZNF800	168850	genome.wustl.edu	37	7	127014788	127014788	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000265827	-1	known	p.D201G	1.000	121	0%	188	41%	4	50%	benign(0)	deleterious(0.02)	neutral(0.383)	NULL
SND1	27044	genome.wustl.edu	37	7	127341310	127341310	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014390.2	+1	validated	p.R174	0.993	202	0%	298	41.6%	106	76.4%	-	-	-	NULL
SND1	27044	genome.wustl.edu	37	7	127631005	127631005	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014390.2	+1	validated	p.E559*	1.000	110	0%	120	45%	134	1.4%	-	-	-	HMMPfam_SNase,HMMSmart_SNc,superfamily_Staphylococal_nuclease_OB-fold
RBM28	55131	genome.wustl.edu	37	7	127953322	127953322	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018077.2	-1	reviewed	p.R684Q	1.000	269	0%	414	42.8%	16	43.7%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
IMPDH1	3614	genome.wustl.edu	37	7	128035011	128035011	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000883.3	-1	reviewed	p.K494N	1.000	70	0%	79	51.9%	50	42%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_IMPDH,superfamily_SSF51412
CALU	813	genome.wustl.edu	37	7	128409214	128409214	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001130674.1	+1	reviewed	p.E314G	1.000	207	0%	282	46.1%	50	18%	benign(0.35)	deleterious(0)	deleterious(0.555)	NULL
CCDC136	64753	genome.wustl.edu	37	7	128434403	128434403	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_022742.3	+1	validated	p.G6	1.000	52	0%	53	43.4%	0	-	-	-	-	NULL
FLNC	2318	genome.wustl.edu	37	7	128477720	128477720	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001458.4	+1	reviewed	p.Q294K	1.000	41	0%	40	45%	1	0%	benign(0)	tolerated(1)	-	HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin
FLNC	2318	genome.wustl.edu	37	7	128480651	128480651	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001458.4	+1	reviewed	p.F533	0.986	207	0%	199	42.2%	5	20%	-	-	-	HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin
FLNC	2318	genome.wustl.edu	37	7	128482402	128482402	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001458.4	+1	reviewed	p.V747I	1.000	23	0%	48	41.7%	4	50%	benign(0.38)	tolerated(0.05)	neutral(0.467)	HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin
IRF5	3663	genome.wustl.edu	37	7	128588141	128588141	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001098629.1	+1	reviewed	p.K382N	1.000	100	0%	181	42.5%	2	50%	probably_damaging(0.959)	tolerated(0.08)	deleterious(0.703)	superfamily_SMAD_FHA,HMMPfam_IRF-3
FAM40B	57464	genome.wustl.edu	37	7	129095142	129095142	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020704.2	+1	validated	p.K255R	1.000	217	0%	326	27.6%	0	-	probably_damaging(0.994)	tolerated(0.5)	neutral(0.462)	HMMPfam_N1221
UBE2H	7328	genome.wustl.edu	37	7	129474806	129474806	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003344.2	-1	reviewed	p.E175K	1.000	148	0%	148	41.9%	16	25%	probably_damaging(0.991)	tolerated(0.06)	deleterious(0.766)	NULL
KLHDC10	23008	genome.wustl.edu	37	7	129769276	129769276	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014997.2	+1	validated	e9-1	1.000	183	0%	213	42.7%	1	100%	-	-	-	-
C7orf45	136263	genome.wustl.edu	37	7	129855849	129855849	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_145268.3	+1	validated	p.D92N	0.086	240	0%	269	40.9%	0	-	possibly_damaging(0.507)	deleterious(0.04)	deleterious(0.518)	NULL
KLF14	136259	genome.wustl.edu	37	7	130418270	130418270	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_138693.2	-1	reviewed	p.C197	0.998	22	0%	37	56.8%	1	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
PODXL	5420	genome.wustl.edu	37	7	131196152	131196152	+	Silent	SNP	C	C	T	rs138137657	by1000genomes	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001018111.2	-1	reviewed	p.P47	0.000	486	0.4%	605	44.3%	571	55.6%	-	-	-	NULL
PLXNA4	91584	genome.wustl.edu	37	7	131831456	131831456	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020911.1	-1	validated	p.N1623S	1.000	72	0%	113	48.7%	0	-	benign(0)	tolerated(0.69)	neutral(0.002)	superfamily_GTPase activation domain GAP,HMMPfam_Plexin_cytopl
PLXNA4	91584	genome.wustl.edu	37	7	131865477	131865477	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020911.1	-1	validated	p.I1169	1.000	28	0%	42	26.2%	0	-	-	-	-	HMMPfam_TIG,HMMSmart_SM00429,superfamily_E set domains
CALD1	800	genome.wustl.edu	37	7	134625911	134625911	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033138.3	+1	reviewed	p.K485N	1.000	142	0%	201	37.3%	8	0%	unknown(0)	deleterious(0.01)	-	HMMPfam_Caldesmon
AGBL3	340351	genome.wustl.edu	37	7	134719318	134719318	+	Missense_Mutation	SNP	C	C	T	rs192567465	by1000genomes	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_178563.3	+1	provisional	p.R326C	1.000	197	0%	239	18.4%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Peptidase_M14,superfamily_Zn-dependent exopeptidases
WDR91	29062	genome.wustl.edu	37	7	134878136	134878136	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014149.3	-1	validated	p.A502	0.997	53	0%	58	39.7%	17	23.5%	-	-	-	superfamily_WD40 repeat-like
NUP205	23165	genome.wustl.edu	37	7	135282914	135282914	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015135.2	+1	validated	p.L745I	1.000	193	0%	268	25.4%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NUP205	23165	genome.wustl.edu	37	7	135292084	135292084	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015135.2	+1	validated	p.R1054*	0.073	137	0%	185	38.4%	13	23%	-	-	-	NULL
NUP205	23165	genome.wustl.edu	37	7	135301962	135301962	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015135.2	+1	validated	p.K1219N	1.000	313	0%	403	39.2%	8	37.5%	benign(0.286)	tolerated(0.49)	neutral(0.098)	NULL
CHRM2	1129	genome.wustl.edu	37	7	136699628	136699628	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000739.2	+1	reviewed	p.N6H	1.000	233	0%	317	39.1%	0	-	unknown(0)	tolerated(0.17)	-	superfamily_Family A G protein-coupled receptor-like
DGKI	9162	genome.wustl.edu	37	7	137237214	137237214	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004717.2	-1	reviewed	p.P683H	1.000	85	0%	133	45.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DAGK_acc,HMMSmart_DAGKa
ATP6V0A4	50617	genome.wustl.edu	37	7	138441268	138441268	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020632.2	-1	reviewed	p.K219N	1.000	250	0%	259	44.8%	1	100%	possibly_damaging(0.948)	deleterious(0.03)	deleterious(0.756)	HMMPfam_V_ATPase_I
LUC7L2	51631	genome.wustl.edu	37	7	139102432	139102432	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016019.2	+1	validated	p.R320W	1.000	104	0%	150	50%	64	34.3%	unknown(0)	deleterious(0.01)	-	NULL
PARP12	64761	genome.wustl.edu	37	7	139754560	139754560	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000491598	-1	known	p.E2*	1.000	276	0%	284	41.2%	2	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
DENND2A	27147	genome.wustl.edu	37	7	140259550	140259550	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015689.3	-1	validated	p.F616C	1.000	262	0%	309	43.4%	13	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_uDENN,HMMSmart_SM00800
DENND2A	27147	genome.wustl.edu	37	7	140273771	140273771	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015689.3	-1	validated	p.S428*	1.000	267	0%	386	44.3%	3	0%	-	-	-	NULL
DENND2A	27147	genome.wustl.edu	37	7	140301333	140301333	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015689.3	-1	validated	p.F289V	0.002	122	0.8%	127	48%	1	0%	benign(0.253)	tolerated(0.49)	neutral(0.036)	NULL
AGK	55750	genome.wustl.edu	37	7	141351366	141351366	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018238.3	+1	validated	p.T363M	0.997	63	0%	95	34.7%	30	26.6%	possibly_damaging(0.693)	deleterious(0.01)	deleterious(0.653)	NULL
TAS2R3	50831	genome.wustl.edu	37	7	141464017	141464017	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016943.2	+1	reviewed	p.G20E	0.995	313	0%	380	45.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TAS2R,superfamily_Family A G protein-coupled receptor-like
MGAM	8972	genome.wustl.edu	37	7	141727469	141727469	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004668.2	+1	reviewed	p.Y385	0.421	141	0%	171	38.6%	0	-	-	-	-	HMMPfam_Glyco_hydro_31
MGAM	8972	genome.wustl.edu	37	7	141734096	141734096	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004668.2	+1	reviewed	p.L568	0.998	98	0%	119	37%	0	-	-	-	-	HMMPfam_Glyco_hydro_31
TRBV7-6	28592	genome.wustl.edu	37	7	142139377	142139377	+	Missense_Mutation	SNP	C	C	T	rs191214614	by1000genomes	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000390374	-1	known	p.R83Q	0.000	147	0%	188	41%	0	-	probably_damaging(0.995)	tolerated(0.08)	deleterious(0.758)	HMMSmart_SM00406,HMMPfam_V-set,superfamily_Immunoglobulin
EPHB6	2051	genome.wustl.edu	37	7	142566827	142566827	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004445.3	+1	reviewed	p.S795L	0.928	19	0%	18	44.4%	54	33.3%	benign(0.001)	deleterious(0)	neutral(0.445)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
TAS2R39	259285	genome.wustl.edu	37	7	142880600	142880600	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_176881.2	+1	provisional	p.S30L	0.005	216	0%	291	48.8%	0	-	benign(0.08)	deleterious(0)	neutral(0.450)	HMMPfam_TAS2R,superfamily_SSF81321
TAS2R40	259286	genome.wustl.edu	37	7	142919941	142919941	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_176882.1	+1	provisional	p.I257T	0.027	94	0%	135	12.6%	0	-	benign(0.003)	tolerated(0.12)	neutral(0.261)	HMMPfam_TAS2R,superfamily_Family A G protein-coupled receptor-like
GSTK1	373156	genome.wustl.edu	37	7	142961700	142961700	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001143679.1	+1	reviewed	p.L72F	0.000	180	0%	252	47.6%	142	47.8%	possibly_damaging(0.803)	tolerated(0.21)	neutral(0.346)	HMMPfam_DSBA,superfamily_Thiordxn-like_fd
CASP2	835	genome.wustl.edu	37	7	142997326	142997326	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032982.2	+1	reviewed	p.N302	0.993	115	0%	91	45.1%	23	34.7%	-	-	-	HMMPfam_Peptidase_C14,HMMSmart_SM00115,superfamily_Caspase-like
FAM131B	9715	genome.wustl.edu	37	7	143054021	143054021	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001031690.2	-1	validated	p.S235	0.991	36	0%	30	43.3%	2	0%	-	-	-	NULL
FAM131B	9715	genome.wustl.edu	37	7	143056656	143056656	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000452076	-1	known	p.P30H	0.013	58	0%	57	21.1%	0	-	probably_damaging(0.999)	-	-	NULL
LOC728377	728377	genome.wustl.edu	37	7	143983587	143983587	+	RNA	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XR_078379.1	-1	model	NULL	0.095	100	0%	95	36.8%	4	25%	-	-	-	-
ARHGEF5	7984	genome.wustl.edu	37	7	144060969	144060969	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005435.3	+1	reviewed	p.H403Y	0.104	219	0%	286	21%	13	23%	benign(0.044)	deleterious(0.02)	neutral(0.386)	NULL
ARHGEF5	7984	genome.wustl.edu	37	7	144077105	144077105	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005435.3	+1	reviewed	p.R1584*	0.992	100	1%	122	44.3%	21	47.6%	-	-	-	NULL
CNTNAP2	26047	genome.wustl.edu	37	7	147869528	147869528	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014141.5	+1	reviewed	p.D990N	1.000	204	0%	241	43.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases
CNTNAP2	26047	genome.wustl.edu	37	7	147926752	147926752	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014141.5	+1	reviewed	p.R1088*	0.997	221	0.5%	236	40.3%	1	0%	-	-	-	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
CUL1	8454	genome.wustl.edu	37	7	148494941	148494941	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003592.2	+1	validated	p.S646L	1.000	420	0.5%	484	23.8%	23	17.3%	possibly_damaging(0.45)	tolerated(0.15)	neutral(0.388)	HMMPfam_Cullin,superfamily_Cullin homology domain
CUL1	8454	genome.wustl.edu	37	7	148494942	148494942	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003592.2	+1	validated	p.S646	0.003	419	0%	489	46%	25	60%	-	-	-	HMMPfam_Cullin,superfamily_Cullin homology domain
EZH2	2146	genome.wustl.edu	37	7	148525837	148525837	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004456.3	-1	reviewed	p.R207Q	0.078	307	0.7%	355	39.7%	0	-	benign(0)	tolerated(0.4)	neutral(0.016)	HMMSmart_SANT
ZNF775	285971	genome.wustl.edu	37	7	150093893	150093893	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_173680.3	+1	validated	p.V108	1.000	8	0.000	19	0.368	4	75%	-	-	-	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667
GIMAP8	155038	genome.wustl.edu	37	7	150164422	150164422	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_175571.2	+1	reviewed	p.Q212H	0.025	43	0%	57	38.6%	1	0%	probably_damaging(0.956)	tolerated(0.07)	deleterious(0.719)	HMMPfam_AIG1
GIMAP4	55303	genome.wustl.edu	37	7	150269429	150269429	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018326.2	+1	reviewed	p.D91N	0.999	137	0%	199	46.2%	7	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_AIG1,superfamily_SSF52540
GIMAP2	26157	genome.wustl.edu	37	7	150389858	150389858	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015660.2	+1	reviewed	p.D162N	0.000	100	0%	160	48.7%	5	40%	benign(0)	tolerated(0.48)	neutral(0.011)	HMMPfam_AIG1,superfamily_SSF52540
ABP1	26	genome.wustl.edu	37	7	150554283	150554283	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001091.2	+1	reviewed	p.F242S	1.000	89	0%	109	51.4%	74	48.6%	benign(0.121)	deleterious(0.02)	neutral(0.393)	superfamily_Amine oxidase N-terminal region
ABP1	26	genome.wustl.edu	37	7	150557704	150557704	+	Nonsense_Mutation	SNP	G	G	T	rs150589026	by1000genomes	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001091.2	+1	reviewed	p.E658*	1.000	109	0%	165	39.4%	90	46.6%	-	-	-	HMMPfam_Cu_amine_oxid,superfamily_Amine oxidase catalytic domain
ATG9B	285973	genome.wustl.edu	37	7	150713883	150713883	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_173681.5	-1	validated	p.S772L	0.983	118	0%	172	49.4%	0	-	benign(0.164)	-	-	NULL
SLC4A2	6522	genome.wustl.edu	37	7	150767631	150767631	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003040.3	+1	validated	p.N513D	1.000	39	0%	46	41.3%	69	44.9%	benign(0.009)	tolerated(1)	neutral(0.001)	HMMPfam_Band_3_cyto,superfamily_Phoshotransferase/anion transport protein
ASB10	136371	genome.wustl.edu	37	7	150884266	150884267	+	Frame_Shift_Ins	INS	-	-	AG	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001142459.1	-1	reviewed	p.P30fs	0.000:0.003	-	-	-	-	-	-	-	-	-	NULL
GALNTL5	168391	genome.wustl.edu	37	7	151664366	151664366	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_145292.3	+1	validated	p.G12E	0.000	140	0%	141	25.5%	0	-	probably_damaging(0.974)	deleterious(0)	deleterious(0.861)	NULL
GALNTL5	168391	genome.wustl.edu	37	7	151668119	151668119	+	Missense_Mutation	SNP	G	G	A	rs181262306	by1000genomes	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_145292.3	+1	validated	p.E113K	0.000	151	0%	168	45.2%	0	-	benign(0.054)	tolerated(0.11)	neutral(0.275)	superfamily_Nucleotide-diphospho-sugar transferases
GALNT11	63917	genome.wustl.edu	37	7	151802422	151802422	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_022087.2	+1	validated	p.R227*	1.000	121	0%	163	50.9%	33	0%	-	-	-	HMMPfam_Glycos_transf_2,superfamily_Nucleotide-diphospho-sugar transferases
MLL3	58508	genome.wustl.edu	37	7	151917728	151917728	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_170606.2	-1	reviewed	p.K1198Q	1.000	321	0.3%	413	41.2%	2	50%	probably_damaging(0.999)	-	-	NULL
MLL3	58508	genome.wustl.edu	37	7	151960108	151960108	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_170606.2	-1	reviewed	p.K431R	1.000	155	0%	229	44.5%	16	50%	possibly_damaging(0.722)	-	-	HMMSmart_SM00184,HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD
MLL3	58508	genome.wustl.edu	37	7	152055755	152055755	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_170606.2	-1	reviewed	p.R56Q	1.000	326	0%	332	42.8%	2	50%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
LOC100132707	100132707	genome.wustl.edu	37	7	154739407	154739407	+	RNA	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NR_024476.1	+1	validated	NULL	0.000	15	0%	14	35.7%	3	0%	-	-	-	-
PAXIP1	22976	genome.wustl.edu	37	7	154767529	154767529	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007349.3	-1	reviewed	p.Q317	0.079	158	0%	157	38.2%	3	100%	-	-	-	NULL
CNPY1	285888	genome.wustl.edu	37	7	155301633	155301633	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001103176.1	-1	validated	p.K34Q	0.879	110	0%	151	41.7%	0	-	benign(0.255)	tolerated(0.52)	neutral(0.035)	NULL
RBM33	155435	genome.wustl.edu	37	7	155530841	155530841	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_053043.2	+1	validated	p.S494N	0.989	316	0%	386	44.8%	25	48%	unknown(0)	tolerated(0.39)	-	NULL
SHH	6469	genome.wustl.edu	37	7	155596251	155596251	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000193.2	-1	reviewed	p.R244	0.997	15	0.000	7	0.571	0	-	-	-	-	HMMPfam_Hint,HMMSmart_HintN,superfamily_SSF51294
PTPRN2	5799	genome.wustl.edu	37	7	157341694	157341694	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002847.3	-1	reviewed	p.I974	1.000	130	0%	177	50.8%	2	0%	-	-	-	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
PTPRN2	5799	genome.wustl.edu	37	7	158282442	158282442	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002847.3	-1	reviewed	p.E50K	0.827	13	0%	19	42.1%	0	-	unknown(0)	tolerated(0.24)	-	NULL
FBXO25	26260	genome.wustl.edu	37	8	401290	401290	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_183421.1	+1	reviewed	p.P166H	1.000	209	0%	280	16.1%	15	0%	probably_damaging(0.993)	tolerated(0.13)	deleterious(0.703)	NULL
DLGAP2	9228	genome.wustl.edu	37	8	1645405	1645405	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004745.3	+1	reviewed	p.F883	0.950	19	0%	15	60%	0	-	-	-	-	HMMPfam_GKAP
ARHGEF10	9639	genome.wustl.edu	37	8	1851515	1851515	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014629.2	+1	reviewed	p.L573	0.958	143	0%	139	41%	7	28.5%	-	-	-	HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_DH-domain
MYOM2	9172	genome.wustl.edu	37	8	2000389	2000389	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003970.2	+1	validated	p.R74Q	0.248	92	0%	112	50.9%	0	-	possibly_damaging(0.865)	tolerated(0.2)	neutral(0.384)	NULL
MYOM2	9172	genome.wustl.edu	37	8	2092810	2092810	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003970.2	+1	validated	p.V1435M	1.000	42	0%	52	48.1%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_I-set,superfamily_SSF48726
CSMD1	64478	genome.wustl.edu	37	8	3265591	3265591	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033225.5	-1	validated	p.Q635R	1.000	136	0%	177	47.5%	0	-	probably_damaging(0.98)	tolerated(0.1)	deleterious(0.710)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
CSMD1	64478	genome.wustl.edu	37	8	3326298	3326298	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033225.5	-1	validated	p.Q500H	1.000	108	0.9%	131	47.3%	0	-	probably_damaging(0.999)	tolerated(0.07)	deleterious(0.809)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
CSMD1	64478	genome.wustl.edu	37	8	3855460	3855460	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033225.5	-1	validated	p.F261L	0.963	106	0%	144	23.6%	0	-	benign(0.008)	tolerated(0.11)	neutral(0.272)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
CSMD1	64478	genome.wustl.edu	37	8	3855510	3855510	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033225.5	-1	validated	p.T245A	1.000	119	0%	177	36.7%	0	-	probably_damaging(0.989)	tolerated(0.29)	deleterious(0.469)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
CSMD1	64478	genome.wustl.edu	37	8	4494976	4494976	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033225.5	-1	validated	p.T64A	1.000	142	0%	174	45.4%	0	-	benign(0.004)	tolerated(1)	-	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
DEFB107A	245910	genome.wustl.edu	37	8	7673088	7673088	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001037668.1	-1	reviewed	p.I21M	0.638	577	0%	675	21%	0	-	benign(0.278)	deleterious(0.04)	neutral(0.379)	NULL
MFHAS1	9258	genome.wustl.edu	37	8	8748537	8748537	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004225.2	-1	reviewed	p.R678*	0.009	66	0%	103	51.5%	13	53.8%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_Polo-box domain
PPP1R3B	79660	genome.wustl.edu	37	8	8998916	8998916	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024607.2	-1	validated	p.F82	0.231	124	0%	153	22.9%	8	0%	-	-	-	NULL
SLC35G5	83650	genome.wustl.edu	37	8	11189075	11189075	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_054028.1	+1	reviewed	p.L154I	0.992	117	0%	158	47.5%	2	50%	probably_damaging(0.987)	tolerated(0.29)	neutral(0.466)	HMMPfam_DUF6,superfamily_SSF103481
BLK	640	genome.wustl.edu	37	8	11412358	11412358	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001715.2	+1	validated	p.I193	0.785	31	0%	47	40.4%	0	-	-	-	-	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain
ENSG00000205879	0	genome.wustl.edu	37	8	12031932	12031932	+	Nonsense_Mutation	SNP	G	G	A	rs2898323		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000382200	-1	known	p.R133*	0.007	242	0%	303	19.1%	0	-	-	-	-	NULL
ENSG00000205879	0	genome.wustl.edu	37	8	12031964	12031964	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000382200	-1	known	p.S122F	0.002	251	0%	283	17.7%	1	0%	-	-	-	NULL
OR7E8P	346708	genome.wustl.edu	37	8	12542102	12542102	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000317826	-1	known	p.K195N	0.003	231	0%	397	44.8%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
DLC1	10395	genome.wustl.edu	37	8	12946138	12946138	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_182643.2	-1	reviewed	p.R1384C	1.000	137	0%	210	36.7%	2	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_START,HMMSmart_SM00234,superfamily_Bet v1-like
C8orf48	157773	genome.wustl.edu	37	8	13424580	13424580	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001007090.2	+1	validated	p.N27T	0.001	62	0%	93	45.2%	0	-	benign(0.001)	tolerated(0.37)	neutral(0.019)	NULL
C8orf48	157773	genome.wustl.edu	37	8	13424891	13424891	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001007090.2	+1	validated	p.N131H	0.994	119	0%	159	45.9%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
MSR1	4481	genome.wustl.edu	37	8	16035394	16035394	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_138715.2	-1	reviewed	e1+1	0.994	106	0%	160	40%	0	-	-	-	-	-
SLC7A2	6542	genome.wustl.edu	37	8	17409284	17409284	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003046.5	+1	validated	p.R322W	1.000	392	0%	538	45.9%	0	-	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMPfam_AA_permease
SLC7A2	6542	genome.wustl.edu	37	8	17412194	17412194	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001008539.3	+1	validated	p.S394L	1.000	232	0%	291	47.8%	5	20%	probably_damaging(0.989)	tolerated(0.05)	deleterious(0.785)	HMMPfam_AA_permease
MTUS1	57509	genome.wustl.edu	37	8	17504527	17504527	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001001924.2	-1	reviewed	p.L1188W	0.023	343	0%	432	41.9%	14	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MTUS1	57509	genome.wustl.edu	37	8	17612005	17612005	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001001924.2	-1	reviewed	p.V438I	0.000	157	0%	162	42%	5	60%	benign(0.073)	tolerated(0.34)	neutral(0.028)	NULL
PCM1	5108	genome.wustl.edu	37	8	17871496	17871496	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006197.3	+1	validated	p.K1845N	0.999	167	0%	158	19%	33	15.1%	benign(0.025)	deleterious(0.05)	neutral(0.346)	NULL
ASAH1	427	genome.wustl.edu	37	8	17927368	17927368	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004315.4	-1	reviewed	p.S95Y	0.018	309	0%	390	49.5%	138	39.8%	benign(0.002)	tolerated(0.29)	neutral(0.029)	NULL
NAT1	9	genome.wustl.edu	37	8	18080021	18080021	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000662.5	+1	reviewed	p.E155D	0.014	104	0%	132	41.7%	18	16.6%	benign(0)	tolerated(0.25)	neutral(0.037)	HMMPfam_Acetyltransf_2,superfamily_SSF54001
INTS10	55174	genome.wustl.edu	37	8	19684059	19684059	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018142.2	+1	validated	p.E377*	1.000	237	0%	280	43.2%	12	16.6%	-	-	-	NULL
LPL	4023	genome.wustl.edu	37	8	19809333	19809333	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000311322	+1	known	p.K101N	0.982	196	0%	270	41.9%	7	0%	benign(0.19)	tolerated(0.15)	neutral(0.259)	HMMPfam_Lipase,superfamily_alpha/beta-Hydrolases
LPL	4023	genome.wustl.edu	37	8	19813470	19813470	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000311322	+1	known	p.E298D	0.923	137	0%	173	45.7%	2	0%	benign(0.001)	tolerated(0.47)	neutral(0.011)	HMMPfam_Lipase,superfamily_alpha/beta-Hydrolases
XPO7	23039	genome.wustl.edu	37	8	21827726	21827726	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001100161.1	+1	validated	p.L111V	1.000	183	0%	245	11.8%	49	18.3%	benign(0.33)	tolerated(0.09)	neutral(0.400)	superfamily_ARM repeat
XPO7	23039	genome.wustl.edu	37	8	21832255	21832255	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001100161.1	+1	validated	p.I198	1.000	423	0.2%	604	12.7%	30	13.3%	-	-	-	superfamily_ARM repeat
PPP3CC	5533	genome.wustl.edu	37	8	22390489	22390489	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005605.3	+1	provisional	p.P427S	1.000	59	0%	83	48.2%	13	38.4%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	superfamily_SSF56300
RHOBTB2	23221	genome.wustl.edu	37	8	22864912	22864912	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015178.2	+1	validated	p.V385A	1.000	38	0%	48	10.4%	14	0%	benign(0)	tolerated(1)	-	HMMSmart_BTB,superfamily_BTB/POZ_fold
TNFRSF10C	8794	genome.wustl.edu	37	8	22969275	22969275	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003841.2	+1	reviewed	p.P35S	0.001	135	0%	175	45.7%	1	0%	probably_damaging(0.992)	-	-	NULL
ADAM7	8756	genome.wustl.edu	37	8	24323245	24323245	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000380789	+1	known	p.E116K	0.957	279	0%	277	38.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pep_M12B_propep
DOCK5	80005	genome.wustl.edu	37	8	25149670	25149670	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024940.6	+1	validated	p.K151T	1.000	96	0%	122	10.7%	4	25%	probably_damaging(0.957)	tolerated(0.13)	deleterious(0.653)	NULL
DOCK5	80005	genome.wustl.edu	37	8	25253089	25253089	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024940.6	+1	validated	p.E1520K	1.000	57	0%	90	46.7%	4	0%	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	NULL
PPP2R2A	5520	genome.wustl.edu	37	8	26196414	26196414	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002717.3	+1	reviewed	p.I31L	1.000	176	0%	223	48%	4	100%	probably_damaging(0.974)	deleterious(0.02)	deleterious(0.799)	HMMSmart_SM00320,superfamily_WD40 repeat-like
DPYSL2	1808	genome.wustl.edu	37	8	26441361	26441361	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001386.4	+1	validated	p.E59K	1.000	116	0%	181	40.3%	8	0%	benign(0.099)	deleterious(0)	neutral(0.452)	superfamily_Composite domain of metallo-dependent hydrolases
PTK2B	2185	genome.wustl.edu	37	8	27287616	27287616	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004103.3	+1	reviewed	p.F186	1.000	127	0%	152	38.8%	4	50%	-	-	-	HMMPfam_FERM_M,superfamily_Second domain of FERM,HMMSmart_SM00295
PTK2B	2185	genome.wustl.edu	37	8	27296913	27296913	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004103.3	+1	reviewed	p.F611S	1.000	74	0%	94	33%	4	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
PBK	55872	genome.wustl.edu	37	8	27678168	27678168	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018492.2	-1	reviewed	p.S170Y	1.000	196	0%	215	44.7%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,HMMPfam_Pkinase
SCARA5	286133	genome.wustl.edu	37	8	27729483	27729483	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_173833.4	-1	provisional	p.E486K	1.000	64	0%	105	46.7%	1	0%	possibly_damaging(0.837)	deleterious(0)	deleterious(0.764)	HMMPfam_SRCR,HMMSmart_SM00202,superfamily_SRCR-like
C8orf80	389643	genome.wustl.edu	37	8	27886875	27886875	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001010906.1	-1	provisional	p.D688Y	0.998	141	0%	186	45.7%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
FBXO16	157574	genome.wustl.edu	37	8	28321248	28321248	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_172366.2	-1	reviewed	p.R75*	0.652	185	0%	193	17.1%	2	0%	-	-	-	NULL
EXTL3	2137	genome.wustl.edu	37	8	28574876	28574876	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001440.2	+1	provisional	p.I434V	0.999	45	0%	57	52.6%	15	46.6%	benign(0.001)	tolerated(0.13)	neutral(0.253)	HMMPfam_Exostosin
EXTL3	2137	genome.wustl.edu	37	8	28575316	28575316	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001440.2	+1	provisional	p.T580	0.034	57	0%	64	51.6%	18	44.4%	-	-	-	NULL
KIF13B	23303	genome.wustl.edu	37	8	28989949	28989949	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015254.3	-1	validated	p.E940K	1.000	206	0%	251	41.8%	7	28.5%	probably_damaging(0.982)	tolerated(0.08)	deleterious(0.726)	NULL
TMEM66	51669	genome.wustl.edu	37	8	29921413	29921413	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016127.4	-1	provisional	p.R337	1.000	380	0%	437	43%	208	51.4%	unknown(0)	-	-	HMMPfam_DUF1183
MBOAT4	619373	genome.wustl.edu	37	8	29990213	29990213	+	Missense_Mutation	SNP	C	C	T	rs146255946		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001100916.1	-1	validated	p.R185Q	0.009	75	0%	89	42.7%	0	-	benign(0.11)	tolerated(0.25)	neutral(0.045)	HMMPfam_MBOAT
TEX15	56154	genome.wustl.edu	37	8	30704222	30704222	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_031271.3	-1	validated	p.P771Q	1.000	128	0%	150	43.3%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
TEX15	56154	genome.wustl.edu	37	8	30705014	30705014	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_031271.3	-1	validated	p.S507F	0.001	383	0%	380	41.8%	0	-	benign(0.002)	tolerated(0.81)	neutral(0.001)	NULL
TEX15	56154	genome.wustl.edu	37	8	30706317	30706317	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_031271.3	-1	validated	p.L73	0.040	347	0%	468	46.2%	0	-	-	-	-	NULL
PURG	29942	genome.wustl.edu	37	8	30889580	30889580	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_013357.2	-1	reviewed	p.I240T	0.999	74	0%	97	45.4%	1	0%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_PurA,HMMSmart_SM00712
NRG1	3084	genome.wustl.edu	37	8	32617767	32617767	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_013956.3	+1	reviewed	p.I376L	0.013	51	0%	51	52.9%	0	-	benign(0)	tolerated(0.52)	neutral(0.009)	HMMPfam_Neuregulin
NRG1	3084	genome.wustl.edu	37	8	32621436	32621436	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_013956.3	+1	reviewed	p.L485R	0.092	107	0%	145	46.2%	0	-	probably_damaging(0.997)	tolerated(0.73)	neutral(0.468)	HMMPfam_Neuregulin
KCNU1	157855	genome.wustl.edu	37	8	36793138	36793138	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001031836.2	+1	validated	p.F1050L	0.000	149	0%	224	43.3%	0	-	benign(0.033)	tolerated(0.39)	neutral(0.018)	NULL
GPR124	25960	genome.wustl.edu	37	8	37693214	37693214	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032777.8	+1	validated	p.N659T	1.000	32	0%	34	41.2%	20	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
RAB11FIP1	80223	genome.wustl.edu	37	8	37734802	37734802	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001002814.2	-1	validated	p.K213N	1.000	282	0%	393	40.7%	17	29.4%	possibly_damaging(0.602)	deleterious(0.01)	deleterious(0.614)	NULL
ASH2L	9070	genome.wustl.edu	37	8	37972509	37972509	+	Silent	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004674.3	+1	validated	p.L256	0.975	135	0%	200	47.5%	12	58.3%	-	-	-	NULL
LSM1	27257	genome.wustl.edu	37	8	38021327	38021327	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014462.1	-1	provisional	p.Q88R	1.000	147	0.7%	192	42.7%	28	46.4%	benign(0.004)	tolerated(0.54)	neutral(0.007)	NULL
TACC1	6867	genome.wustl.edu	37	8	38677639	38677639	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006283.2	+1	reviewed	p.E293*	0.003	44	0%	62	41.9%	1	0%	-	-	-	NULL
GINS4	84296	genome.wustl.edu	37	8	41397471	41397471	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032336.2	+1	validated	p.V144	0.013	63	0%	114	46.5%	12	41.6%	-	-	-	HMMPfam_Sld5
ANK1	286	genome.wustl.edu	37	8	41550298	41550298	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001142446.1	-1	reviewed	p.F1283	1.000	56	0%	79	41.8%	0	-	-	-	-	NULL
KAT6A	7994	genome.wustl.edu	37	8	41791546	41791546	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001099412.1	-1	validated	p.E1398K	1.000	231	0%	285	18.2%	11	0%	possibly_damaging(0.916)	tolerated(0.29)	neutral(0.396)	NULL
IKBKB	3551	genome.wustl.edu	37	8	42179654	42179654	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001556.1	+1	validated	p.V607	0.986	142	0%	141	49.6%	28	53.5%	-	-	-	NULL
C8orf40	114926	genome.wustl.edu	37	8	42403849	42403849	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001135674.1	+1	validated	p.T62N	0.984	239	0%	296	41.2%	47	38.2%	benign(0)	tolerated(0.18)	neutral(0.056)	NULL
CHRNB3	1142	genome.wustl.edu	37	8	42587271	42587271	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000749.3	+1	validated	p.S274Y	1.000	231	0%	324	47.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore
CHRNA6	8973	genome.wustl.edu	37	8	42611573	42611573	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004198.2	-1	provisional	p.L257I	1.000	251	0%	282	43.3%	0	-	possibly_damaging(0.86)	deleterious(0.02)	deleterious(0.716)	HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore
HGSNAT	138050	genome.wustl.edu	37	8	43047494	43047494	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152419.2	+1	reviewed	p.N433T	1.000	191	0%	185	47.6%	31	54.8%	probably_damaging(0.965)	deleterious(0.01)	deleterious(0.812)	HMMPfam_DUF2261
ENSG00000215179	0	genome.wustl.edu	37	8	47885452	47885452	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000399732	-1	known	p.R260I	1.000	127	0%	152	36.8%	0	-	-	-	-	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
PRKDC	5591	genome.wustl.edu	37	8	48695146	48695146	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000314191	-1	known	p.A3729V	0.535	22	0%	23	30.4%	266	39.8%	benign(0)	tolerated(0.27)	neutral(0.034)	superfamily_Protein kinase-like (PK-like)
PRKDC	5591	genome.wustl.edu	37	8	48766729	48766729	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000314191	-1	known	p.N2269D	1.000	244	0%	299	39.1%	8	25%	probably_damaging(1)	tolerated(0.11)	deleterious(0.772)	superfamily_ARM repeat
PRKDC	5591	genome.wustl.edu	37	8	48798608	48798608	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000314191	-1	known	p.Y1557S	1.000	128	0%	181	36.5%	12	41.6%	probably_damaging(0.996)	tolerated(0.11)	deleterious(0.733)	NULL
PRKDC	5591	genome.wustl.edu	37	8	48811087	48811087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000314191	-1	known	p.R1136H	1.000	214	0%	279	44.8%	5	80%	benign(0.299)	deleterious(0.05)	neutral(0.438)	superfamily_ARM repeat
ENSG00000252710	0	genome.wustl.edu	37	8	49220551	49220551	+	RNA	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000516901	-1	novel	NULL	0.009	50	0%	48	50%	0	-	-	-	-	-
PXDNL	137902	genome.wustl.edu	37	8	52284496	52284496	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_144651.4	-1	validated	p.D1280N	0.990	127	0%	138	37%	0	-	benign(0.007)	tolerated(0.33)	neutral(0.024)	superfamily_Heme-dependent peroxidases
LYPLA1	10434	genome.wustl.edu	37	8	54963582	54963582	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006330.2	-1	reviewed	p.S210L	1.000	218	0%	264	47%	54	46.2%	probably_damaging(0.96)	deleterious(0)	deleterious(0.848)	HMMPfam_Abhydrolase_2,superfamily_alpha/beta-Hydrolases
RP1	6101	genome.wustl.edu	37	8	55540686	55540686	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006269.1	+1	reviewed	p.S1415N	0.000	85	0%	120	52.5%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
RP1	6101	genome.wustl.edu	37	8	55541108	55541108	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006269.1	+1	reviewed	p.E1556*	0.673	145	0%	120	30.8%	0	-	-	-	-	NULL
CHCHD7	79145	genome.wustl.edu	37	8	57129894	57129894	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001011668.1	+1	validated	p.S78Y	0.917	174	0%	237	44.7%	7	42.8%	probably_damaging(0.983)	deleterious(0.01)	deleterious(0.835)	NULL
SDR16C6P	442388	genome.wustl.edu	37	8	57307732	57307732	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000444271	-1	known	p.L65I	0.998	283	0%	369	40.1%	0	-	-	-	-	HMMPfam_adh_short,superfamily_NAD(P)-binding Rossmann-fold domains
CA8	767	genome.wustl.edu	37	8	61178561	61178561	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004056.4	-1	reviewed	p.E114K	1.000	167	0%	211	47.9%	40	40%	possibly_damaging(0.918)	deleterious(0)	deleterious(0.813)	HMMPfam_Carb_anhydrase,superfamily_Carbonic anhydrase
ENSG00000237810	0	genome.wustl.edu	37	8	63056735	63056735	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000433538	-1	known	p.V160	0.994	57	0%	61	49.2%	1	0%	-	-	-	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
CYP7B1	9420	genome.wustl.edu	37	8	65528458	65528458	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004820.3	-1	reviewed	p.D214Y	1.000	133	0%	196	44.4%	0	-	probably_damaging(0.981)	deleterious(0.01)	deleterious(0.831)	superfamily_Cytochrome P450
MTFR1	9650	genome.wustl.edu	37	8	66620283	66620283	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000424808	+1	known	p.E324*	0.001	97	0%	119	42.9%	0	-	-	-	-	NULL
C8orf44	56260	genome.wustl.edu	37	8	67591962	67591962	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_019607.1	+1	provisional	p.E85*	0.022	279	0%	266	35%	0	-	-	-	-	NULL
SGK3	23678	genome.wustl.edu	37	8	67726120	67726120	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001033578.1	+1	reviewed	p.E96K	1.000	168	0%	190	43.7%	1	100%	possibly_damaging(0.887)	tolerated(0.06)	deleterious(0.669)	HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain
C8orf45	157777	genome.wustl.edu	37	8	67786473	67786473	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000415737	+1	known	p.T33M	0.908	104	1%	111	43.2%	0	-	unknown(0)	-	-	NULL
C8orf45	157777	genome.wustl.edu	37	8	67786682	67786682	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_173518.4	+1	validated	p.V72	0.985	299	0%	340	42.6%	0	-	-	-	-	NULL
COPS5	10987	genome.wustl.edu	37	8	67971645	67971645	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006837.2	-1	reviewed	p.L60S	1.000	177	0%	232	47.8%	137	44.5%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_Mov34,HMMSmart_JAB_MPN,superfamily_SSF102712
CSPP1	79848	genome.wustl.edu	37	8	68044264	68044264	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001077204.1	+1	validated	p.P622	1.000	284	0%	396	44.4%	2	0%	-	-	-	NULL
ARFGEF1	10565	genome.wustl.edu	37	8	68139756	68139756	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006421.3	-1	reviewed	p.E1223D	0.991	138	0%	185	45.4%	4	50%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_DUF1981,superfamily_ARM-type_fold
ARFGEF1	10565	genome.wustl.edu	37	8	68200227	68200227	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006421.3	-1	reviewed	p.Q330H	1.000	438	0.2%	643	22.6%	21	28.5%	benign(0.037)	deleterious(0.04)	neutral(0.351)	superfamily_ARM-type_fold
ARFGEF1	10565	genome.wustl.edu	37	8	68255469	68255469	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006421.3	-1	reviewed	p.K18N	1.000	130	0%	165	53.3%	2	50%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_ARM-type_fold
CPA6	57094	genome.wustl.edu	37	8	68421854	68421854	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020361.4	-1	validated	e5-1	1.000	183	0%	207	42.5%	0	-	-	-	-	-
C8orf34	116328	genome.wustl.edu	37	8	69633640	69633640	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_052958.1	+1	predicted	p.E347K	0.997	523	0%	566	18.4%	2	0%	benign(0.097)	tolerated(0.19)	neutral(0.057)	NULL
LOC100288066	100288066	genome.wustl.edu	37	8	70585088	70585088	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_002342855.1	+1	model	p.F72	0.350	53	0%	62	48.4%	0	-	-	-	-	NULL
SLCO5A1	81796	genome.wustl.edu	37	8	70744801	70744801	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_030958.2	-1	reviewed	p.K36N	1.000	21	0%	28	35.7%	0	-	possibly_damaging(0.946)	deleterious(0)	deleterious(0.835)	NULL
NCOA2	10499	genome.wustl.edu	37	8	71044133	71044133	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006540.2	-1	validated	p.R1088Q	1.000	183	0%	238	45.4%	8	50%	probably_damaging(0.99)	tolerated(0.05)	deleterious(0.787)	superfamily_Nuc_recept_coact,HMMPfam_Nuc_rec_co-act
XKR9	389668	genome.wustl.edu	37	8	71646532	71646532	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001011720.1	+1	provisional	p.G332V	1.000	218	0%	305	38.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_XK-related
TRPA1	8989	genome.wustl.edu	37	8	72959429	72959429	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007332.2	-1	reviewed	p.F640C	0.379	208	0%	248	37.5%	0	-	benign(0.001)	tolerated(0.15)	neutral(0.241)	superfamily_Ankyrin repeat
TRPA1	8989	genome.wustl.edu	37	8	72969984	72969984	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007332.2	-1	reviewed	p.S354Y	1.000	245	0%	272	42.3%	0	-	probably_damaging(0.993)	deleterious(0.02)	deleterious(0.833)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
RDH10	157506	genome.wustl.edu	37	8	74231354	74231354	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_172037.3	+1	validated	p.T183	0.814	308	0%	381	50.9%	78	28.2%	-	-	-	HMMPfam_adh_short,superfamily_NAD(P)-binding Rossmann-fold domains
TCEB1	6921	genome.wustl.edu	37	8	74858960	74858960	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005648.2	-1	reviewed	p.R82C	1.000	253	0%	361	48.2%	256	46.4%	benign(0.004)	tolerated(0.05)	neutral(0.345)	HMMSmart_SM00512,superfamily_POZ domain
JPH1	56704	genome.wustl.edu	37	8	75227154	75227154	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020647.2	-1	reviewed	p.E361*	1.000	124	0%	123	35.8%	1	100%	-	-	-	NULL
ZFHX4	79776	genome.wustl.edu	37	8	77616422	77616422	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024721.4	+1	validated	p.E33D	1.000	80	0%	120	46.7%	0	-	possibly_damaging(0.69)	tolerated(0.73)	neutral(0.248)	NULL
ZFHX4	79776	genome.wustl.edu	37	8	77616914	77616914	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024721.4	+1	validated	p.I197	1.000	128	0%	168	38.1%	0	-	-	-	-	NULL
ZFHX4	79776	genome.wustl.edu	37	8	77761302	77761302	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024721.4	+1	validated	p.E1150*	1.000	127	0%	131	42%	0	-	-	-	-	NULL
ZFHX4	79776	genome.wustl.edu	37	8	77765032	77765032	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024721.4	+1	validated	p.L1914I	1.000	62	0%	60	21.7%	0	-	benign(0.076)	-	-	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZFHX4	79776	genome.wustl.edu	37	8	77766678	77766678	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024721.4	+1	validated	p.L2462	1.000	187	0%	179	41.3%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZFHX4	79776	genome.wustl.edu	37	8	77767563	77767563	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024721.4	+1	validated	p.E2757D	1.000	61	0%	62	17.7%	0	-	benign(0.156)	-	-	NULL
ZFHX4	79776	genome.wustl.edu	37	8	77775616	77775616	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024721.4	+1	validated	p.I3177	1.000	354	0%	440	38.4%	0	-	-	-	-	NULL
ZFHX4	79776	genome.wustl.edu	37	8	77775785	77775785	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024721.4	+1	validated	p.P3234T	1.000	125	0%	175	41.1%	0	-	probably_damaging(0.995)	-	-	NULL
ZFHX4	79776	genome.wustl.edu	37	8	77776779	77776779	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024721.4	+1	validated	p.R3565Q	1.000	84	0%	89	18%	0	-	probably_damaging(0.999)	-	-	NULL
PEX2	5828	genome.wustl.edu	37	8	77896042	77896042	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000318.2	-1	reviewed	p.R125*	1.000	170	0%	197	42.6%	23	43.4%	-	-	-	HMMPfam_Pex2_Pex12
ZC2HC1A	51101	genome.wustl.edu	37	8	79598733	79598733	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016010.2	+1	validated	p.R81I	1.000	134	0%	134	39.6%	1	0%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	NULL
TPD52	7163	genome.wustl.edu	37	8	80976724	80976724	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001025252.1	-1	validated	p.E82*	0.988	209	0%	231	48.9%	30	30%	-	-	-	HMMPfam_TPD52
PMP2	5375	genome.wustl.edu	37	8	82357140	82357140	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002677.3	-1	validated	p.R53Q	1.000	496	0.4%	657	44.4%	0	-	probably_damaging(0.98)	tolerated(0.07)	deleterious(0.743)	HMMPfam_Lipocalin,superfamily_Lipocalins
FABP12	646486	genome.wustl.edu	37	8	82439299	82439299	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001105281.1	-1	provisional	p.E102*	0.996	252	0%	354	44.6%	0	-	-	-	-	HMMPfam_Lipocalin,superfamily_Lipocalins
FABP12	646486	genome.wustl.edu	37	8	82439350	82439350	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001105281.1	-1	provisional	p.V85I	0.033	172	0%	266	43.6%	0	-	benign(0.002)	tolerated(0.53)	neutral(0.007)	HMMPfam_Lipocalin,superfamily_Lipocalins
FABP12	646486	genome.wustl.edu	37	8	82441762	82441762	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001105281.1	-1	provisional	p.K53Q	0.999	278	0%	369	42.8%	0	-	possibly_damaging(0.76)	tolerated(0.06)	deleterious(0.604)	HMMPfam_Lipocalin,superfamily_Lipocalins
SNX16	64089	genome.wustl.edu	37	8	82715429	82715429	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_022133.3	-1	reviewed	p.R239H	0.974	591	0.2%	658	44.7%	2	100%	benign(0.001)	tolerated(0.51)	neutral(0.009)	NULL
RALYL	138046	genome.wustl.edu	37	8	85441628	85441628	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001100391.1	+1	validated	p.F37L	1.000	197	0%	223	27.4%	0	-	possibly_damaging(0.731)	deleterious(0)	deleterious(0.712)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
LRRCC1	85444	genome.wustl.edu	37	8	86027783	86027783	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033402.4	+1	validated	p.Q298H	1.000	102	0%	135	20%	1	0%	probably_damaging(0.996)	deleterious(0.05)	deleterious(0.807)	NULL
LRRCC1	85444	genome.wustl.edu	37	8	86044098	86044098	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033402.4	+1	validated	p.E624*	1.000	284	0%	355	39.7%	0	-	-	-	-	NULL
E2F5	1875	genome.wustl.edu	37	8	86115490	86115490	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001951.3	+1	reviewed	p.R169I	1.000	105	0%	100	42%	3	66.6%	possibly_damaging(0.636)	tolerated(0.26)	neutral(0.257)	NULL
E2F5	1875	genome.wustl.edu	37	8	86119719	86119719	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001951.3	+1	reviewed	p.E204*	1.000	121	0%	139	52.5%	6	50%	-	-	-	NULL
WWP1	11059	genome.wustl.edu	37	8	87442975	87442975	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007013.3	+1	validated	p.G461D	1.000	216	0%	270	48.5%	11	63.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_WW,HMMSmart_SM00456,superfamily_WW domain
WWP1	11059	genome.wustl.edu	37	8	87447886	87447886	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007013.3	+1	validated	p.K568Q	1.000	245	0%	386	46.4%	29	27.5%	probably_damaging(0.999)	tolerated(0.07)	deleterious(0.809)	superfamily_Hect E3 ligase catalytic domain
OTUD6B	51633	genome.wustl.edu	37	8	92097057	92097057	+	Silent	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016023.3	+1	validated	p.V311	1.000	184	0%	252	39.7%	3	0%	-	-	-	superfamily_Cysteine proteinases
SLC26A7	115111	genome.wustl.edu	37	8	92330516	92330516	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_134266.1	+1	reviewed	p.T184A	1.000	178	0%	243	37.4%	1	100%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_Sulfate_transp
RUNX1T1	862	genome.wustl.edu	37	8	92972720	92972720	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_175634.1	-1	reviewed	p.A522V	1.000	48	0%	72	44.4%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-MYND,PatternScan_ZF_MYND_1
RBM12B	389677	genome.wustl.edu	37	8	94748444	94748444	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_203390.2	-1	validated	p.K65N	1.000	278	0%	311	48.9%	1	100%	probably_damaging(1)	tolerated(0.16)	deleterious(0.559)	HMMSmart_SM00360,superfamily_RNA-binding domain RBD
TMEM67	91147	genome.wustl.edu	37	8	94784853	94784853	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_153704.5	+1	reviewed	p.L230	1.000	262	0%	335	46.9%	3	66.6%	-	-	-	HMMPfam_Meckelin
GEM	2669	genome.wustl.edu	37	8	95272556	95272556	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005261.3	-1	reviewed	p.S59F	1.000	163	0%	284	46.1%	7	0%	possibly_damaging(0.835)	deleterious(0.04)	deleterious(0.667)	NULL
ESRP1	54845	genome.wustl.edu	37	8	95683795	95683795	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017697.3	+1	validated	p.R450*	1.000	242	0%	343	43.1%	10	40%	-	-	-	HMMSmart_SM00360,superfamily_RNA-binding domain RBD
ESRP1	54845	genome.wustl.edu	37	8	95686698	95686698	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017697.3	+1	validated	p.R539*	1.000	159	0%	237	43.9%	11	36.3%	-	-	-	NULL
INTS8	55656	genome.wustl.edu	37	8	95837290	95837290	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017864.2	+1	provisional	p.E100D	1.000	192	0%	212	37.3%	6	50%	possibly_damaging(0.787)	deleterious(0.02)	deleterious(0.677)	NULL
INTS8	55656	genome.wustl.edu	37	8	95844302	95844302	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017864.2	+1	provisional	p.R218I	1.000	168	0%	183	48.6%	5	80%	probably_damaging(0.998)	tolerated(0.11)	deleterious(0.746)	NULL
INTS8	55656	genome.wustl.edu	37	8	95888474	95888474	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017864.2	+1	provisional	p.D930N	1.000	354	0%	439	42.1%	25	40%	benign(0.43)	tolerated(0.28)	neutral(0.172)	NULL
PTDSS1	9791	genome.wustl.edu	37	8	97316363	97316363	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014754.1	+1	provisional	p.S283Y	1.000	331	0.3%	443	35.9%	61	39.3%	possibly_damaging(0.942)	deleterious(0.01)	deleterious(0.792)	HMMPfam_PSS
CPQ	10404	genome.wustl.edu	37	8	98078360	98078367	+	Frame_Shift_Del	DEL	CAGCCCCT	CAGCCCCT	-	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	CAGCCCCT	CAGCCCCT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016134.2	+1	provisional	p.P394fs	0.994:0.998:1.000:1.000:1.000:0.960:0.978:1.000	-	-	-	-	-	-	-	-	-	superfamily_SSF53187
MATN2	4147	genome.wustl.edu	37	8	99047896	99047896	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002380.3	+1	reviewed	p.T943A	1.000	72	0%	76	51.3%	0	-	possibly_damaging(0.442)	deleterious(0.03)	deleterious(0.509)	HMMPfam_Matrilin_ccoil
STK3	6788	genome.wustl.edu	37	8	99718796	99718796	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006281.2	-1	validated	p.E195*	1.000	198	0.5%	274	40.1%	1	0%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
VPS13B	157680	genome.wustl.edu	37	8	100108577	100108577	+	Missense_Mutation	SNP	G	G	A	rs61754110		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017890.3	+1	reviewed	p.R110H	1.000	148	0.7%	130	38.5%	6	50%	benign(0.251)	tolerated(0.42)	neutral(0.040)	NULL
VPS13B	157680	genome.wustl.edu	37	8	100168838	100168838	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017890.3	+1	reviewed	p.R692Q	1.000	214	0.5%	316	45.3%	4	25%	benign(0.001)	tolerated(0.88)	-	NULL
VPS13B	157680	genome.wustl.edu	37	8	100443865	100443865	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017890.3	+1	reviewed	p.W1061*	1.000	215	0%	259	46.7%	2	0%	-	-	-	NULL
RGS22	26166	genome.wustl.edu	37	8	100975155	100975155	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015668.3	-1	validated	p.L1223I	1.000	208	0%	282	41.1%	0	-	probably_damaging(0.971)	tolerated(0.05)	deleterious(0.758)	NULL
RGS22	26166	genome.wustl.edu	37	8	100994300	100994300	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015668.3	-1	validated	p.K1075N	1.000	187	0%	271	44.3%	1	0%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_RGS,HMMSmart_SM00315,superfamily_Regulator of G-protein signaling RGS
RGS22	26166	genome.wustl.edu	37	8	101014534	101014534	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015668.3	-1	validated	p.R896*	0.861	277	0%	344	39%	1	0%	-	-	-	HMMSmart_SM00315,superfamily_Regulator of G-protein signaling RGS
RGS22	26166	genome.wustl.edu	37	8	101054131	101054131	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015668.3	-1	validated	p.S613P	0.011	214	0%	306	45.4%	0	-	benign(0.001)	tolerated(0.15)	neutral(0.241)	NULL
SPAG1	6674	genome.wustl.edu	37	8	101232527	101232527	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003114.3	+1	reviewed	p.F519C	1.000	241	0%	314	44.6%	1	0%	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_Protein prenylyltransferase
RNF19A	25897	genome.wustl.edu	37	8	101271084	101271084	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015435.3	-1	reviewed	p.M739I	1.000	215	0.5%	216	44.4%	13	38.4%	benign(0.13)	deleterious(0.01)	neutral(0.417)	NULL
RNF19A	25897	genome.wustl.edu	37	8	101281038	101281038	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015435.3	-1	reviewed	p.G389D	1.000	116	0.9%	137	35%	16	31.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PABPC1	26986	genome.wustl.edu	37	8	101718929	101718929	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002568.3	-1	validated	p.R518C	1.000	102	0%	107	37.4%	1469	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_PABC (PABP) domain
PABPC1	26986	genome.wustl.edu	37	8	101730486	101730486	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002568.3	-1	validated	p.M72I	1.000	87	0%	108	18.5%	406	15%	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
GRHL2	79977	genome.wustl.edu	37	8	102611287	102611287	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024915.3	+1	reviewed	p.D336N	1.000	268	0%	314	41.7%	30	36.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CP2
NCALD	83988	genome.wustl.edu	37	8	102701563	102701563	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001040624.1	-1	reviewed	p.D186N	1.000	65	0%	99	42.4%	17	29.4%	benign(0.033)	tolerated(0.06)	neutral(0.324)	superfamily_EF-hand
RRM2B	50484	genome.wustl.edu	37	8	103244465	103244465	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015713.4	-1	reviewed	p.S39Y	1.000	244	0%	287	44.9%	3	33.3%	possibly_damaging(0.922)	deleterious(0)	deleterious(0.816)	HMMPfam_Ribonuc_red_sm,superfamily_Ferritin-like
TM7SF4	81501	genome.wustl.edu	37	8	105361738	105361738	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_030788.2	+1	reviewed	p.L320I	1.000	125	0%	137	21.2%	0	-	probably_damaging(1)	tolerated(0.22)	deleterious(0.542)	HMMPfam_DC_STAMP
LRP12	29967	genome.wustl.edu	37	8	105509844	105509844	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_013437.4	-1	reviewed	p.G312	0.405	99	0%	85	36.5%	0	-	-	-	-	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
OXR1	55074	genome.wustl.edu	37	8	107531294	107531294	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018002.2	+1	validated	p.E49	0.999	129	0%	195	42.1%	2	50%	-	-	-	NULL
OXR1	55074	genome.wustl.edu	37	8	107695484	107695484	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018002.2	+1	validated	p.E121K	1.000	245	0%	256	43.4%	9	55.5%	probably_damaging(0.974)	tolerated(0.1)	deleterious(0.702)	HMMSmart_SM00257,HMMPfam_LysM,superfamily_LysM domain
OXR1	55074	genome.wustl.edu	37	8	107754520	107754520	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018002.2	+1	validated	p.V769A	1.000	510	0%	593	42.2%	11	63.6%	possibly_damaging(0.625)	deleterious(0)	deleterious(0.662)	HMMPfam_TLD,HMMSmart_SM00584
ABRA	137735	genome.wustl.edu	37	8	107782410	107782410	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_139166.4	-1	validated	p.P3	0.001	36	0%	21	61.9%	0	-	-	-	-	NULL
PKHD1L1	93035	genome.wustl.edu	37	8	110401349	110401349	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_177531.4	+1	validated	p.S222Y	0.779	452	0%	571	43.3%	1	0%	benign(0.001)	tolerated(0.32)	neutral(0.024)	HMMPfam_TIG,HMMSmart_SM00429,superfamily_E set domains
PKHD1L1	93035	genome.wustl.edu	37	8	110437383	110437383	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_177531.4	+1	validated	p.H923Y	1.000	150	0%	176	46.6%	0	-	benign(0)	tolerated(0.42)	neutral(0.014)	NULL
PKHD1L1	93035	genome.wustl.edu	37	8	110455327	110455327	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_177531.4	+1	validated	p.E1516*	1.000	201	0%	261	42.9%	2	100%	-	-	-	NULL
PKHD1L1	93035	genome.wustl.edu	37	8	110492298	110492298	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_177531.4	+1	validated	p.K3086T	0.888	239	0%	248	44.4%	0	-	benign(0.001)	tolerated(0.71)	neutral(0.002)	superfamily_Pectin lyase-like,HMMPfam_G8
SYBU	55638	genome.wustl.edu	37	8	110655107	110655107	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001099744.1	-1	validated	p.R27W	1.000	156	0%	199	50.3%	4	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CSMD3	114788	genome.wustl.edu	37	8	113256680	113256680	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_198123.1	-1	validated	p.E3449K	1.000	167	0%	227	41.9%	0	-	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CSMD3	114788	genome.wustl.edu	37	8	113259259	113259259	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_198123.1	-1	validated	p.P3404	0.959	168	0%	233	52.4%	0	-	-	-	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CSMD3	114788	genome.wustl.edu	37	8	113317113	113317113	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_198123.1	-1	validated	p.I2701	0.069	83	0%	159	53.5%	0	-	-	-	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CSMD3	114788	genome.wustl.edu	37	8	113347615	113347615	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_198123.1	-1	validated	p.L2370I	1.000	185	0%	239	51%	0	-	probably_damaging(0.998)	tolerated(0.1)	deleterious(0.761)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
CSMD3	114788	genome.wustl.edu	37	8	113516136	113516136	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_198123.1	-1	validated	p.G1656*	1.000	560	0%	688	43.8%	0	-	-	-	-	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
CSMD3	114788	genome.wustl.edu	37	8	113569027	113569027	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_198123.1	-1	validated	p.R1400I	1.000	83	0%	106	32.1%	0	-	probably_damaging(0.991)	tolerated(0.05)	deleterious(0.789)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CSMD3	114788	genome.wustl.edu	37	8	113697959	113697959	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_198123.1	-1	validated	p.P720S	1.000	67	0%	84	63.1%	0	-	unknown(0)	tolerated(0.54)	-	superfamily_Spermadhesin CUB domain
CSMD3	114788	genome.wustl.edu	37	8	114031326	114031326	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_198123.1	-1	validated	p.R334*	1.000	291	0%	396	38.6%	0	-	-	-	-	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
TRPS1	7227	genome.wustl.edu	37	8	116426651	116426651	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014112.2	-1	reviewed	p.L1162R	1.000	298	0%	336	43.5%	29	48.2%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
SLC30A8	169026	genome.wustl.edu	37	8	118175721	118175721	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_173851.2	+1	reviewed	p.A261T	0.998	391	0%	404	42.1%	0	-	benign(0.01)	tolerated(0.39)	neutral(0.017)	HMMPfam_Cation_efflux
ENPP2	5168	genome.wustl.edu	37	8	120602777	120602777	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006209.3	-1	reviewed	p.R444I	1.000	241	0%	357	39.5%	13	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Phosphodiest,superfamily_Alkaline phosphatase-like
ENPP2	5168	genome.wustl.edu	37	8	120631537	120631537	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006209.3	-1	reviewed	p.S142	0.318	266	0%	291	41.2%	14	0%	-	-	-	HMMPfam_Somatomedin_B,HMMSmart_SM00201
COL14A1	7373	genome.wustl.edu	37	8	121210082	121210082	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021110.1	+1	validated	p.E209*	1.000	266	0.8%	331	42.3%	5	0%	-	-	-	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
MTBP	27085	genome.wustl.edu	37	8	121463476	121463476	+	Silent	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_022045.3	+1	provisional	p.L113	0.999	369	0%	470	46.4%	0	-	-	-	-	NULL
MTBP	27085	genome.wustl.edu	37	8	121473428	121473428	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_022045.3	+1	provisional	p.E304*	0.998	408	0%	466	43.6%	1	0%	-	-	-	NULL
MTBP	27085	genome.wustl.edu	37	8	121483158	121483158	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_022045.3	+1	provisional	p.K382N	0.996	194	0%	288	40.3%	0	-	possibly_damaging(0.753)	tolerated(0.18)	neutral(0.333)	NULL
HAS2	3037	genome.wustl.edu	37	8	122626853	122626853	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005328.2	-1	reviewed	p.F385L	1.000	80	0%	112	48.2%	0	-	possibly_damaging(0.465)	tolerated(1)	neutral(0.153)	superfamily_SSF53448
WDR67	93594	genome.wustl.edu	37	8	124164165	124164165	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_145647.3	+1	validated	p.L1063I	0.003	78	0%	111	45.9%	1	0%	possibly_damaging(0.791)	tolerated(0.2)	neutral(0.345)	NULL
ZHX1	11244	genome.wustl.edu	37	8	124267554	124267554	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001017926.1	-1	reviewed	p.E211D	0.841	161	0.6%	190	44.7%	1	0%	benign(0.003)	tolerated(0.61)	neutral(0.004)	NULL
ATAD2	29028	genome.wustl.edu	37	8	124349940	124349940	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014109.3	-1	reviewed	p.F992L	1.000	322	0.3%	401	46.1%	5	60%	probably_damaging(1)	tolerated(0.16)	deleterious(0.559)	HMMSmart_SM00297,superfamily_Bromodomain,superfamily_P-loop containing nucleoside triphosphate hydrolases
ATAD2	29028	genome.wustl.edu	37	8	124351593	124351593	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014109.3	-1	reviewed	p.L938I	1.000	320	0.3%	312	41.3%	1	100%	possibly_damaging(0.927)	tolerated(0.14)	deleterious(0.625)	superfamily_P-loop containing nucleoside triphosphate hydrolases
FAM91A1	157769	genome.wustl.edu	37	8	124796788	124796788	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_144963.2	+1	validated	p.S261*	1.000	273	0%	305	43.9%	2	0%	-	-	-	NULL
RNF139	11236	genome.wustl.edu	37	8	125499628	125499628	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007218.3	+1	reviewed	p.D580Y	1.000	109	0.9%	175	10.3%	59	18.6%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMSmart_SM00184,HMMSmart_SM00744,HMMPfam_zf-C3HC4,superfamily_RING/U-box
KIAA0196	9897	genome.wustl.edu	37	8	126094651	126094651	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014846.3	-1	reviewed	p.L131F	1.000	214	0%	242	46.3%	10	60%	probably_damaging(0.996)	tolerated(0.38)	deleterious(0.479)	HMMPfam_Strumpellin
GSDMC	56169	genome.wustl.edu	37	8	130764132	130764132	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_031415.2	-1	validated	p.E298K	0.000	88	0%	94	48.9%	1	0%	benign(0.075)	tolerated(1)	neutral(0.005)	HMMPfam_Gasdermin
ASAP1	50807	genome.wustl.edu	37	8	131226910	131226910	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018482.2	-1	validated	p.L99	0.999	152	0%	176	13.1%	2	0%	-	-	-	NULL
ADCY8	114	genome.wustl.edu	37	8	131922048	131922048	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001115.2	-1	reviewed	p.L516	1.000	229	0%	337	50.4%	0	-	-	-	-	HMMPfam_Guanylate_cyc,HMMSmart_CYCc,superfamily_A/G_cyclase
EFR3A	23167	genome.wustl.edu	37	8	132991256	132991256	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015137.3	+1	validated	p.R497*	0.042	135	0%	152	45.4%	6	0%	-	-	-	NULL
HHLA1	10086	genome.wustl.edu	37	8	133101847	133101847	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001145095.1	-1	provisional	e7-1	1.000	205	0.5%	275	43.6%	0	-	-	-	-	-
KCNQ3	3786	genome.wustl.edu	37	8	133153455	133153455	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004519.2	-1	reviewed	p.K462N	1.000	255	0%	332	40.4%	0	-	possibly_damaging(0.914)	deleterious(0.01)	deleterious(0.772)	HMMPfam_KCNQ_channel
TMEM71	137835	genome.wustl.edu	37	8	133734363	133734363	+	Splice_Site	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_144649.2	-1	validated	e6-2	0.980	138	0%	199	18.6%	0	-	-	-	-	-
TG	7038	genome.wustl.edu	37	8	133881992	133881992	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003235.4	+1	reviewed	p.N65	0.000	54	0%	64	39.1%	0	-	-	-	-	HMMPfam_Thyroglobulin_1,HMMSmart_SM00211,PatternScan_THYROGLOBULIN_1_1,superfamily_Thyroglobulin type-1 domain
TG	7038	genome.wustl.edu	37	8	133898913	133898913	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003235.4	+1	reviewed	p.Q432H	0.000	87	0%	103	46.6%	0	-	possibly_damaging(0.456)	deleterious(0.02)	deleterious(0.532)	NULL
TG	7038	genome.wustl.edu	37	8	133899206	133899206	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003235.4	+1	reviewed	p.S530Y	0.003	68	0%	73	35.6%	0	-	possibly_damaging(0.819)	deleterious(0)	deleterious(0.754)	NULL
TG	7038	genome.wustl.edu	37	8	133923652	133923652	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003235.4	+1	reviewed	p.P1345T	0.923	411	0%	488	39.8%	0	-	benign(0.004)	tolerated(0.58)	neutral(0.005)	NULL
TG	7038	genome.wustl.edu	37	8	133953756	133953756	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003235.4	+1	reviewed	p.C1734	0.531	224	0%	299	39.5%	0	-	-	-	-	NULL
TG	7038	genome.wustl.edu	37	8	134108577	134108577	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003235.4	+1	reviewed	p.S2511Y	0.816	114	0%	180	41.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases
FAM135B	51059	genome.wustl.edu	37	8	139164587	139164587	+	Missense_Mutation	SNP	G	G	A	rs186109085	by1000genomes	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015912.3	-1	validated	p.R711W	0.516	51	0%	66	45.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
COL22A1	169044	genome.wustl.edu	37	8	139611127	139611127	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000341807	-1	known	p.Q629K	0.771	70	0%	88	34.1%	0	-	-	-	-	HMMPfam_Collagen
COL22A1	169044	genome.wustl.edu	37	8	139825239	139825239	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152888.1	-1	validated	p.I423	0.987	159	0%	231	40.3%	0	-	-	-	-	HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases
PTK2	5747	genome.wustl.edu	37	8	141745480	141745480	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005607.3	-1	reviewed	p.R656*	0.994	253	0%	345	44.1%	24	12.5%	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
GPR20	2843	genome.wustl.edu	37	8	142367016	142367016	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005293.2	-1	validated	p.G336	0.002	11	0%	33	48.5%	0	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
BAI1	575	genome.wustl.edu	37	8	143569852	143569852	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001702.2	+1	reviewed	p.F812L	1.000	55	0%	87	40.2%	1	0%	benign(0.001)	tolerated(1)	-	NULL
BAI1	575	genome.wustl.edu	37	8	143602204	143602204	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001702.2	+1	reviewed	p.S981Y	1.000	181	0%	257	38.1%	3	33.3%	possibly_damaging(0.932)	deleterious(0.03)	deleterious(0.743)	HMMPfam_7tm_2
JRK	8629	genome.wustl.edu	37	8	143746002	143746002	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001077527.1	-1	reviewed	p.P492	0.000	7	0.000	18	0.500	9	55.5%	-	-	-	NULL
JRK	8629	genome.wustl.edu	37	8	143746471	143746471	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001077527.1	-1	reviewed	p.R336Q	0.024	21	0%	26	23.1%	2	50%	-	-	-	HMMPfam_DDE
JRK	8629	genome.wustl.edu	37	8	143747021	143747021	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001077527.1	-1	reviewed	p.E153*	0.037	59	0%	74	44.6%	0	-	-	-	-	NULL
CYP11B2	1585	genome.wustl.edu	37	8	143993988	143993988	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000498.3	-1	reviewed	p.G452	0.759	49	0%	63	50.8%	0	-	-	-	-	HMMPfam_p450,superfamily_Cytochrome P450,PatternScan_CYTOCHROME_P450
TOP1MT	116447	genome.wustl.edu	37	8	144407637	144407637	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_052963.1	-1	reviewed	p.E184*	1.000	234	0%	281	41.6%	6	16.6%	-	-	-	HMMPfam_Topoisom_I_N,superfamily_TopoI_DNA_bd_euk
EEF1D	1936	genome.wustl.edu	37	8	144669020	144669020	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001130054.1	-1	reviewed	e2-1	1.000	147	0%	161	41%	178	44.3%	-	-	-	-
PLEC	5339	genome.wustl.edu	37	8	145007096	145007096	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_201380.2	-1	reviewed	p.E671D	1.000	21	0%	22	50%	71	29.5%	unknown(0)	-	-	HMMSmart_SM00150,superfamily_Spectrin repeat
PLEC	5339	genome.wustl.edu	37	8	145007435	145007435	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_201380.2	-1	reviewed	p.R587W	1.000	64	0%	96	44.8%	123	50.4%	unknown(0)	-	-	NULL
HEATR7A	727957	genome.wustl.edu	37	8	145247303	145247303	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032450.2	+1	provisional	p.Q316R	1.000	34	0%	36	44.4%	25	52%	probably_damaging(0.996)	deleterious(0.04)	deleterious(0.810)	superfamily_ARM repeat
DGAT1	8694	genome.wustl.edu	37	8	145541611	145541611	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012079.4	-1	validated	p.R274Q	1.000	63	0%	58	44.8%	133	51.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MBOAT
ZNF251	90987	genome.wustl.edu	37	8	145947064	145947064	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_138367.1	-1	validated	p.H661N	0.016	127	0%	149	35.6%	4	50%	benign(0.082)	tolerated(0.1)	neutral(0.292)	NULL
ZNF251	90987	genome.wustl.edu	37	8	145947691	145947691	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_138367.1	-1	validated	p.R452*	0.510	116	0%	164	29.3%	7	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF7	7553	genome.wustl.edu	37	8	146054881	146054881	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003416.2	+1	validated	p.D8N	0.999	179	0%	207	45.9%	2	50%	possibly_damaging(0.921)	deleterious(0)	deleterious(0.816)	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
ZNF16	7564	genome.wustl.edu	37	8	146156908	146156908	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001029976.2	-1	reviewed	p.K422T	0.005	126	0%	189	39.7%	16	43.7%	probably_damaging(0.996)	tolerated(0.46)	deleterious(0.474)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
DOCK8	81704	genome.wustl.edu	37	9	340298	340298	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_203447.3	+1	reviewed	p.V484	0.004	95	0%	139	43.9%	0	-	-	-	-	NULL
DOCK8	81704	genome.wustl.edu	37	9	414915	414915	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_203447.3	+1	reviewed	p.I1154V	1.000	235	0%	328	43%	2	0%	benign(0.012)	tolerated(1)	neutral(0.001)	NULL
DOCK8	81704	genome.wustl.edu	37	9	422053	422053	+	Missense_Mutation	SNP	G	G	A	rs182516558	by1000genomes	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_203447.3	+1	reviewed	p.D1319N	1.000	197	0%	229	43.2%	1	100%	benign(0.045)	tolerated(0.22)	neutral(0.045)	NULL
DOCK8	81704	genome.wustl.edu	37	9	446447	446447	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_203447.3	+1	reviewed	p.K1818N	1.000	125	0%	143	44.1%	2	50%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Ded_cyto
DMRT3	58524	genome.wustl.edu	37	9	990504	990504	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021240.2	+1	validated	p.A306	0.393	118	0%	148	48%	0	-	-	-	-	NULL
SMARCA2	6595	genome.wustl.edu	37	9	2083404	2083404	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003070.3	+1	reviewed	p.I802M	0.997	326	0%	330	41.5%	12	41.6%	benign(0.278)	deleterious(0)	deleterious(0.475)	HMMPfam_SNF2_N,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
KIAA0020	9933	genome.wustl.edu	37	9	2810354	2810354	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014878.4	-1	validated	p.N571	0.001	517	0%	708	43.4%	18	38.8%	-	-	-	HMMPfam_CPL
RFX3	5991	genome.wustl.edu	37	9	3293151	3293151	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_134428.1	-1	reviewed	p.P219	1.000	298	0%	368	41.8%	7	42.8%	-	-	-	"HMMPfam_RFX_DNA_binding,superfamily_""Winged helix"" DNA-binding domain"
GLIS3	169792	genome.wustl.edu	37	9	3829399	3829399	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001042413.1	-1	reviewed	p.S856L	1.000	99	0%	147	51.7%	29	58.6%	possibly_damaging(0.718)	tolerated(0.07)	deleterious(0.579)	NULL
JAK2	3717	genome.wustl.edu	37	9	5044402	5044402	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004972.3	+1	reviewed	e3-1	1.000	281	0%	330	38.8%	0	-	-	-	-	-
JAK2	3717	genome.wustl.edu	37	9	5126393	5126393	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004972.3	+1	reviewed	p.E1080*	1.000	304	0%	341	47.8%	3	0%	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
C9orf46	55848	genome.wustl.edu	37	9	5361185	5361185	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018465.2	-1	provisional	p.A72V	0.999	130	0%	174	28.2%	8	37.5%	probably_damaging(0.977)	tolerated(0.38)	neutral(0.436)	HMMPfam_DUF2368
PDCD1LG2	80380	genome.wustl.edu	37	9	5549473	5549473	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_025239.3	+1	validated	p.S167F	0.007	72	0%	97	37.1%	1	0%	benign(0.118)	deleterious(0.02)	neutral(0.393)	HMMPfam_C2-set_2,superfamily_Immunoglobulin
ERMP1	79956	genome.wustl.edu	37	9	5798875	5798875	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024896.2	-1	validated	p.R734Q	1.000	170	0%	181	48.6%	15	33.3%	benign(0.315)	tolerated(0.31)	neutral(0.126)	NULL
ERMP1	79956	genome.wustl.edu	37	9	5805715	5805715	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024896.2	-1	validated	p.V540A	0.006	155	0%	206	10.2%	11	18.1%	benign(0)	tolerated(0.1)	neutral(0.286)	NULL
KIAA2026	158358	genome.wustl.edu	37	9	5920513	5920513	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001017969.2	-1	validated	p.S1828F	1.000	390	0%	531	47.6%	10	10%	possibly_damaging(0.926)	deleterious(0.01)	deleterious(0.780)	NULL
KIAA2026	158358	genome.wustl.edu	37	9	5920974	5920974	+	Silent	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001017969.2	-1	validated	p.A1674	0.973	97	0%	132	36.4%	8	62.5%	-	-	-	NULL
RANBP6	26953	genome.wustl.edu	37	9	6012973	6012973	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012416.2	-1	validated	p.L879I	1.000	113	0%	132	24.2%	7	14.2%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_ARM-type_fold
RANBP6	26953	genome.wustl.edu	37	9	6013451	6013451	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012416.2	-1	validated	p.L719	1.000	137	0%	145	42.1%	7	28.5%	-	-	-	superfamily_ARM-type_fold
GLDC	2731	genome.wustl.edu	37	9	6587274	6587274	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000170.2	-1	reviewed	p.W573R	1.000	120	0%	116	38.8%	2	50%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	superfamily_PyrdxlP-dep_Trfase_major
GLDC	2731	genome.wustl.edu	37	9	6605162	6605162	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000170.2	-1	reviewed	p.T277M	0.991	200	0%	251	44.2%	5	40%	possibly_damaging(0.935)	deleterious(0.03)	deleterious(0.745)	superfamily_PyrdxlP-dep_Trfase_major,HMMPfam_GDC-P
MPDZ	8777	genome.wustl.edu	37	9	13205073	13205073	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003829.3	-1	validated	p.S503L	0.031	272	0%	265	46.4%	3	0%	benign(0)	tolerated(0.35)	neutral(0.021)	NULL
LOC138864	138864	genome.wustl.edu	37	9	14069071	14069071	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_002342892.1	+1	model	p.E47D	0.493	36	0%	42	52.4%	0	-	-	-	-	HMMPfam_Mt_ATP-synt_D
FREM1	158326	genome.wustl.edu	37	9	14823161	14823161	+	Silent	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_144966.5	-1	reviewed	p.P778	0.790	166	0%	257	47.5%	1	0%	-	-	-	NULL
FREM1	158326	genome.wustl.edu	37	9	14823259	14823259	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_144966.5	-1	reviewed	p.D746Y	0.324	171	0%	238	21.8%	5	0%	benign(0)	tolerated(1)	-	NULL
FREM1	158326	genome.wustl.edu	37	9	14859223	14859223	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_144966.5	-1	reviewed	p.E197*	0.455	60	0%	77	42.9%	1	0%	-	-	-	NULL
FREM1	158326	genome.wustl.edu	37	9	14863899	14863899	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_144966.5	-1	reviewed	p.V79	0.847	136	0%	164	46.3%	2	50%	-	-	-	NULL
PSIP1	11168	genome.wustl.edu	37	9	15486857	15486857	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001128217.1	-1	validated	p.D121Y	1.000	396	0%	448	45.3%	15	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Tudor/PWWP/MBT
PSIP1	11168	genome.wustl.edu	37	9	15490042	15490042	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001128217.1	-1	validated	p.F77C	1.000	338	0%	474	40.5%	10	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Tudor/PWWP/MBT
PSIP1	11168	genome.wustl.edu	37	9	15506596	15506596	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001128217.1	-1	validated	p.N38H	1.000	378	0%	507	44.2%	7	57.1%	benign(0.258)	tolerated(0.09)	neutral(0.324)	HMMPfam_PWWP,HMMSmart_SM00293,superfamily_Tudor/PWWP/MBT
C9orf93	203238	genome.wustl.edu	37	9	15744280	15744280	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_173550.2	+1	predicted	p.E687*	1.000	74	0%	93	49.5%	0	-	-	-	-	NULL
C9orf93	203238	genome.wustl.edu	37	9	15744768	15744768	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_173550.2	+1	predicted	p.K849N	0.993	134	0.7%	153	43.1%	1	100%	benign(0.119)	deleterious(0.01)	neutral(0.415)	NULL
BNC2	54796	genome.wustl.edu	37	9	16419499	16419499	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017637.5	-1	validated	p.D930N	1.000	64	0%	76	17.1%	2	0%	possibly_damaging(0.459)	tolerated(0.74)	neutral(0.152)	NULL
BNC2	54796	genome.wustl.edu	37	9	16436243	16436243	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017637.5	-1	validated	p.A650V	1.000	257	0%	339	41.6%	1	0%	probably_damaging(0.983)	deleterious(0.01)	deleterious(0.835)	NULL
BNC2	54796	genome.wustl.edu	37	9	16436730	16436730	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017637.5	-1	validated	p.R488C	1.000	188	0%	222	44.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
CNTLN	54875	genome.wustl.edu	37	9	17330769	17330769	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017738.2	+1	validated	p.R494Q	0.064	180	0%	233	41.6%	0	-	benign(0)	tolerated(0.43)	neutral(0.013)	NULL
CNTLN	54875	genome.wustl.edu	37	9	17464514	17464514	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017738.2	+1	validated	p.D1142N	1.000	68	0%	85	43.5%	0	-	probably_damaging(1)	tolerated(0.4)	deleterious(0.516)	NULL
SH3GL2	6456	genome.wustl.edu	37	9	17791249	17791249	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003026.2	+1	validated	p.L215	0.995	93	0%	123	46.3%	1	0%	-	-	-	HMMPfam_BAR,HMMSmart_SM00721
ADAMTSL1	92949	genome.wustl.edu	37	9	18680542	18680542	+	Nonstop_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000380566	+1	known	p.*440Q	0.958	91	0%	151	42.4%	0	-	-	-	-	NULL
HAUS6	54801	genome.wustl.edu	37	9	19078225	19078225	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017645.3	-1	provisional	p.W380*	1.000	247	0%	254	41.3%	1	0%	-	-	-	NULL
DENND4C	55667	genome.wustl.edu	37	9	19346864	19346864	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017925.4	+1	provisional	p.R1081Q	0.227	119	0%	152	40.1%	5	40%	possibly_damaging(0.619)	deleterious(0.04)	deleterious(0.565)	NULL
RPS6	6194	genome.wustl.edu	37	9	19376343	19376343	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001010.2	-1	reviewed	p.R233I	1.000	95	0%	148	33.8%	328	37.8%	unknown(0)	deleterious(0)	-	NULL
SLC24A2	25769	genome.wustl.edu	37	9	19576983	19576983	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020344.1	-1	provisional	p.I389	0.237	283	0%	373	18.5%	0	-	-	-	-	NULL
SLC24A2	25769	genome.wustl.edu	37	9	19576994	19576994	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020344.1	-1	provisional	p.L386I	1.000	266	0%	330	45.8%	0	-	possibly_damaging(0.838)	tolerated(0.42)	neutral(0.334)	NULL
PTPLAD2	401494	genome.wustl.edu	37	9	21011608	21011608	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001010915.3	-1	validated	p.P157H	1.000	125	0%	137	35.8%	4	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_PTPLA
IFNB1	3456	genome.wustl.edu	37	9	21077435	21077435	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002176.2	-1	validated	p.R145I	0.000	258	0.4%	323	41.5%	0	-	possibly_damaging(0.524)	deleterious(0.04)	deleterious(0.525)	HMMPfam_Interferon,HMMSmart_SM00076,superfamily_4-helical cytokines
IFNB1	3456	genome.wustl.edu	37	9	21077806	21077806	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002176.2	-1	validated	p.S21	0.000	24	0%	54	35.2%	0	-	-	-	-	HMMPfam_Interferon
IFNW1	3467	genome.wustl.edu	37	9	21141285	21141285	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002177.1	-1	provisional	p.R95	0.000	108	0%	157	45.9%	0	-	-	-	-	HMMPfam_Interferon,HMMSmart_IFabd,superfamily_4_helix_cytokine
IFNA4	3441	genome.wustl.edu	37	9	21187206	21187206	+	Missense_Mutation	SNP	A	A	G	rs80233629		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021068.2	-1	validated	p.S109P	0.000	561	0%	687	30.9%	0	-	benign(0.112)	tolerated(0.09)	neutral(0.305)	HMMPfam_Interferon,HMMSmart_IFabd,superfamily_4_helix_cytokine
IFNA17	3451	genome.wustl.edu	37	9	21227960	21227960	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021268.2	-1	validated	p.F71	0.428	253	0%	328	45.1%	0	-	-	-	-	HMMPfam_Interferon,HMMSmart_IFabd,superfamily_4_helix_cytokine
TEK	7010	genome.wustl.edu	37	9	27158079	27158079	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000459.3	+1	reviewed	p.F101L	1.000	215	0.5%	297	18.5%	3	0%	benign(0.125)	tolerated(0.46)	neutral(0.022)	HMMPfam_Ig_Tie2_1
LINGO2	158038	genome.wustl.edu	37	9	27949327	27949327	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152570.1	-1	provisional	p.R448Q	0.998	96	0%	168	19.6%	1	0%	benign(0.4)	tolerated(0.77)	neutral(0.130)	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726
ACO1	48	genome.wustl.edu	37	9	32418144	32418144	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002197.2	+1	reviewed	p.K141N	1.000	205	0%	220	36.4%	1	0%	probably_damaging(0.991)	tolerated(0.43)	neutral(0.458)	HMMPfam_Aconitase,superfamily_Aconitase iron-sulfur domain
DDX58	23586	genome.wustl.edu	37	9	32489410	32489410	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014314.3	-1	reviewed	p.R244I	1.000	264	0%	357	45.9%	0	-	-	-	-	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
DDX58	23586	genome.wustl.edu	37	9	32491325	32491325	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014314.3	-1	reviewed	p.L222R	0.996	171	0%	268	39.2%	0	-	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	superfamily_P-loop containing nucleoside triphosphate hydrolases
TOPORS	10210	genome.wustl.edu	37	9	32542715	32542715	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005802.3	-1	reviewed	p.R603H	0.921	268	0%	363	47.1%	7	42.8%	unknown(0)	deleterious(0.02)	-	NULL
TAF1L	138474	genome.wustl.edu	37	9	32633275	32633275	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_153809.2	-1	provisional	p.R768H	1.000	549	0%	683	44.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KIF24	347240	genome.wustl.edu	37	9	34255112	34255112	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000443226	-1	known	p.R260W	0.996	96	0%	125	47.2%	3	0%	-	-	-	NULL
KIAA1045	23349	genome.wustl.edu	37	9	34971402	34971402	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015297.1	+1	validated	p.R36H	0.917	82	0%	113	16.8%	0	-	benign(0.001)	tolerated(0.06)	neutral(0.323)	NULL
UNC13B	10497	genome.wustl.edu	37	9	35377571	35377571	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006377.3	+1	reviewed	p.I565	1.000	87	0%	86	39.5%	3	66.6%	-	-	-	superfamily_C2_CaLB
CA9	768	genome.wustl.edu	37	9	35676099	35676099	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001216.2	+1	reviewed	p.G215S	0.998	14	0%	16	31.2%	2	100%	probably_damaging(0.968)	tolerated(0.09)	deleterious(0.706)	HMMPfam_Carb_anhydrase,superfamily_Euk_COanhd
GBA2	57704	genome.wustl.edu	37	9	35738221	35738221	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000378088	-1	known	p.S10L	0.000	183	0%	235	41.7%	13	53.8%	benign(0.002)	tolerated(0.75)	neutral(0.002)	NULL
GBA2	57704	genome.wustl.edu	37	9	35738616	35738616	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020944.2	-1	reviewed	p.S654F	1.000	161	0%	248	43.1%	105	46.6%	probably_damaging(0.983)	tolerated(0.65)	neutral(0.432)	HMMPfam_DUF608,superfamily_Six-hairpin glycosidases
SPAG8	26206	genome.wustl.edu	37	9	35810883	35810883	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_172312.1	-1	reviewed	p.R346*	0.579	322	0%	396	17.7%	0	-	-	-	-	NULL
TMEM8B	51754	genome.wustl.edu	37	9	35852877	35852877	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001042589.1	+1	provisional	p.Y291	0.992	418	0%	575	42.3%	16	6.2%	-	-	-	NULL
TMEM8B	51754	genome.wustl.edu	37	9	35853760	35853760	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001042589.1	+1	provisional	p.L448	1.000	31	0%	56	51.8%	2	0%	-	-	-	NULL
OR13J1	392309	genome.wustl.edu	37	9	35869592	35869592	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001004487.1	-1	provisional	p.I269	0.001	88	0%	155	50.3%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
MELK	9833	genome.wustl.edu	37	9	36581737	36581737	+	Splice_Site	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014791.2	+1	provisional	e1+1	1.000	448	0%	561	40.6%	0	-	-	-	-	-
MELK	9833	genome.wustl.edu	37	9	36671152	36671152	+	Silent	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014791.2	+1	provisional	p.R555	0.996	142	0.7%	165	44.8%	16	43.7%	-	-	-	superfamily_SSF103243
PAX5	5079	genome.wustl.edu	37	9	37006476	37006476	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016734.1	-1	reviewed	p.S157G	1.000	664	0%	758	45.1%	0	-	benign(0.029)	tolerated(0.2)	neutral(0.051)	NULL
ZBTB5	9925	genome.wustl.edu	37	9	37440625	37440625	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014872.2	-1	validated	p.A642T	1.000	155	0%	170	15.9%	13	15.3%	benign(0.207)	deleterious(0.05)	neutral(0.365)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
FBXO10	26267	genome.wustl.edu	37	9	37512665	37512665	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012166.2	-1	validated	p.S917Y	0.994	61	0%	60	20%	2	0%	probably_damaging(0.979)	deleterious(0.02)	deleterious(0.805)	NULL
FRMPD1	22844	genome.wustl.edu	37	9	37744542	37744542	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014907.2	+1	validated	p.R838I	1.000	66	0%	82	35.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FRMPD1	22844	genome.wustl.edu	37	9	37745225	37745225	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014907.2	+1	validated	p.E1066*	0.414	33	0%	54	48.1%	0	-	-	-	-	NULL
FRMPD1	22844	genome.wustl.edu	37	9	37745940	37745940	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014907.2	+1	validated	p.P1304L	0.036	107	0%	150	16%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
RG9MTD3	158234	genome.wustl.edu	37	9	37762667	37762667	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_144964.2	+1	validated	p.R94C	0.993	288	0.3%	313	46.3%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ANKRD18A	253650	genome.wustl.edu	37	9	38596212	38596212	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000399703	-1	known	p.L375	0.836	220	0%	278	25.5%	0	-	-	-	-	NULL
ANKRD18A	253650	genome.wustl.edu	37	9	38596247	38596247	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000399703	-1	known	p.E364*	0.273	144	0%	195	44.1%	0	-	-	-	-	NULL
ANKRD18A	253650	genome.wustl.edu	37	9	38603210	38603210	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000399703	-1	known	e7-1	0.071	204	0%	274	37.2%	0	-	-	-	-	-
ZNF658	26149	genome.wustl.edu	37	9	40772990	40772990	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033160.5	-1	validated	p.R762I	1.000	206	0%	297	35%	0	-	possibly_damaging(0.81)	tolerated(0.14)	deleterious(0.554)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF658	26149	genome.wustl.edu	37	9	40773322	40773322	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033160.5	-1	validated	p.I651	0.982	290	0%	382	11%	2	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
LOC389722	389722	genome.wustl.edu	37	9	43853595	43853595	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_002342910.1	+1	model	p.L619I	0.082	132	0%	139	18%	2	0%	possibly_damaging(0.568)	tolerated(0.24)	neutral(0.232)	superfamily_Fibrinogen C-terminal domain-like,superfamily_Concanavalin A-like lectins/glucanases
LOC642236	642236	genome.wustl.edu	37	9	68435835	68435835	+	RNA	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XR_041085.2	-1	model	NULL	1.000	21	0%	31	32.3%	0	-	-	-	-	-
PGM5	5239	genome.wustl.edu	37	9	71002396	71002396	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021965.3	+1	validated	p.V197M	1.000	268	0%	292	13.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Phosphoglucomutase first 3 domains
PRKACG	5568	genome.wustl.edu	37	9	71628952	71628952	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002732.3	-1	reviewed	p.F19	1.000	83	0%	110	42.7%	0	-	-	-	-	superfamily_Kinase_like
FXN	2395	genome.wustl.edu	37	9	71668119	71668119	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000144.4	+1	reviewed	p.F109L	1.000	264	0%	257	12.1%	10	10%	possibly_damaging(0.754)	tolerated(0.49)	neutral(0.289)	HMMPfam_Frataxin_Cyay,superfamily_Frataxin-like
TJP2	9414	genome.wustl.edu	37	9	71789298	71789298	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004817.3	+1	reviewed	p.R4*	1.000	19	0%	46	41.3%	0	-	-	-	-	NULL
TJP2	9414	genome.wustl.edu	37	9	71836352	71836352	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004817.3	+1	reviewed	p.E298K	0.724	13	0%	21	52.4%	3	33.3%	benign(0.309)	tolerated(0.79)	neutral(0.098)	superfamily_PDZ domain-like
TRPM3	80036	genome.wustl.edu	37	9	73255514	73255514	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001007471.2	-1	reviewed	p.A470T	1.000	168	0%	209	43.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GDA	9615	genome.wustl.edu	37	9	74828817	74828817	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004293.3	+1	validated	p.R163Q	1.000	400	0.3%	466	46.1%	13	53.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Amidohydro_1,superfamily_Metallo-dependent hydrolases
TMC1	117531	genome.wustl.edu	37	9	75309557	75309557	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_138691.2	+1	reviewed	p.E55*	0.661	530	0%	752	43.8%	0	-	-	-	-	NULL
TMC1	117531	genome.wustl.edu	37	9	75404060	75404060	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_138691.2	+1	reviewed	p.A351S	1.000	89	0%	124	46%	0	-	benign(0.221)	deleterious(0)	neutral(0.467)	NULL
TMC1	117531	genome.wustl.edu	37	9	75431094	75431094	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_138691.2	+1	reviewed	p.V577	1.000	163	0%	197	43.1%	0	-	-	-	-	HMMPfam_TMC
ALDH1A1	216	genome.wustl.edu	37	9	75524522	75524522	+	Missense_Mutation	SNP	C	C	T	rs185575721	by1000genomes	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000689.3	-1	reviewed	p.V452M	1.000	219	0%	306	40.5%	87	1.1%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Aldedh,superfamily_ALDH-like
TRPM6	140803	genome.wustl.edu	37	9	77431618	77431618	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017662.4	-1	reviewed	p.K425N	1.000	264	0%	288	44.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PRUNE2	158471	genome.wustl.edu	37	9	79318531	79318531	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000426088	-1	known	p.R1988W	0.000	85	0%	97	49.5%	0	-	-	-	-	NULL
VPS13A	23230	genome.wustl.edu	37	9	79917862	79917862	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033305.2	+1	reviewed	p.V1282L	0.998	220	0%	242	40.1%	2	100%	benign(0.291)	tolerated(0.05)	neutral(0.435)	NULL
VPS13A	23230	genome.wustl.edu	37	9	79972723	79972723	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033305.2	+1	reviewed	p.S2641*	0.624	122	0.8%	149	41.6%	5	0%	-	-	-	NULL
TLE4	7091	genome.wustl.edu	37	9	82321747	82321747	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000417836	+1	known	p.R23*	1.000	247	0%	247	53%	2	0%	possibly_damaging(0.916)	deleterious(0)	deleterious(0.811)	NULL
TLE1	7088	genome.wustl.edu	37	9	84230908	84230908	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005077.3	-1	provisional	p.E303*	1.000	113	0%	168	41.7%	26	23%	-	-	-	NULL
KIF27	55582	genome.wustl.edu	37	9	86457207	86457207	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017576.1	-1	provisional	p.K1222N	1.000	293	0%	279	34.4%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
KIF27	55582	genome.wustl.edu	37	9	86523407	86523407	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017576.1	-1	provisional	p.M153I	0.800	259	0%	291	40.2%	0	-	benign(0)	tolerated(0.19)	neutral(0.050)	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
NTRK2	4915	genome.wustl.edu	37	9	87359956	87359956	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006180.3	+1	reviewed	p.V422I	0.378	212	0.9%	293	42.3%	3	66.6%	benign(0.04)	tolerated(0.06)	neutral(0.325)	NULL
AGTPBP1	23287	genome.wustl.edu	37	9	88284418	88284418	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015239.2	-1	validated	p.K215R	1.000	179	0%	291	46.4%	1	0%	benign(0.041)	tolerated(0.21)	neutral(0.046)	superfamily_ARM-type_fold
AGTPBP1	23287	genome.wustl.edu	37	9	88307719	88307719	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015239.2	-1	validated	p.N14K	1.000	149	0%	203	45.8%	1	0%	possibly_damaging(0.455)	deleterious(0.03)	deleterious(0.513)	superfamily_ARM-type_fold
LOC100129901	100129901	genome.wustl.edu	37	9	88396185	88396185	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_001716099.2	+1	model	p.D17Y	1.000	279	0%	345	29.3%	0	-	-	-	-	NULL
LOC100129901	100129901	genome.wustl.edu	37	9	88396257	88396257	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_001716099.2	+1	model	p.R41W	0.006	194	0%	249	9.6%	0	-	-	-	-	NULL
C9orf153	389766	genome.wustl.edu	37	9	88842786	88842786	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001010907.1	-1	predicted	p.L76F	0.000	262	0%	353	43.1%	0	-	possibly_damaging(0.893)	tolerated(0.15)	deleterious(0.593)	NULL
DAPK1	1612	genome.wustl.edu	37	9	90263717	90263717	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004938.2	+1	reviewed	p.V451M	1.000	73	0%	112	42%	26	42.3%	probably_damaging(0.964)	deleterious(0.01)	deleterious(0.812)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
DAPK1	1612	genome.wustl.edu	37	9	90321727	90321727	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004938.2	+1	reviewed	p.E1247	1.000	7	0.000	10	0.400	121	60.3%	-	-	-	NULL
DAPK1	1612	genome.wustl.edu	37	9	90322003	90322003	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004938.2	+1	reviewed	p.L1339	0.156	54	0%	48	39.6%	65	38.4%	-	-	-	HMMPfam_Death,HMMSmart_DEATH,superfamily_DEATH_like
C9orf79	286234	genome.wustl.edu	37	9	90501165	90501165	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_178828.4	+1	validated	p.S588F	0.000	47	0%	53	56.6%	0	-	probably_damaging(0.978)	deleterious(0.04)	deleterious(0.769)	NULL
FAM75C1	441452	genome.wustl.edu	37	9	90537366	90537366	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001145124.1	+1	validated	p.V848	0.004	215	0%	269	21.9%	0	-	-	-	-	NULL
SHC3	53358	genome.wustl.edu	37	9	91660706	91660706	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016848.4	-1	validated	p.G386*	0.999	426	0%	553	40.7%	0	-	-	-	-	NULL
SHC3	53358	genome.wustl.edu	37	9	91661837	91661837	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016848.4	-1	validated	p.I345	0.965	201	0%	282	45%	1	0%	-	-	-	NULL
SYK	6850	genome.wustl.edu	37	9	93641235	93641235	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003177.5	+1	reviewed	p.K527N	1.000	81	0%	121	45.5%	44	50%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
NFIL3	4783	genome.wustl.edu	37	9	94171833	94171833	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005384.2	-1	validated	p.S395L	0.892	172	0%	226	40.3%	5	40%	benign(0.071)	deleterious(0)	neutral(0.450)	HMMPfam_Vert_IL3-reg_TF
NFIL3	4783	genome.wustl.edu	37	9	94171983	94171983	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005384.2	-1	validated	p.F345S	0.920	124	0%	176	44.3%	2	0%	benign(0.039)	deleterious(0)	neutral(0.447)	HMMPfam_Vert_IL3-reg_TF
SPTLC1	10558	genome.wustl.edu	37	9	94843223	94843223	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006415.2	-1	reviewed	p.V95M	1.000	285	0%	384	43.5%	12	58.3%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	superfamily_PLP-dependent transferases
NOL8	55035	genome.wustl.edu	37	9	95076694	95076694	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017948.5	-1	validated	p.F738S	0.000	156	0.6%	218	46.3%	6	33.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
OMD	4958	genome.wustl.edu	37	9	95177603	95177603	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005014.2	-1	validated	p.R366Q	0.878	535	0%	724	45%	0	-	benign(0.074)	tolerated(0.09)	neutral(0.301)	superfamily_L domain-like
ASPN	54829	genome.wustl.edu	37	9	95219688	95219688	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017680.3	-1	validated	p.S342Y	1.000	308	0%	405	44.4%	0	-	possibly_damaging(0.609)	deleterious(0)	deleterious(0.655)	NULL
BICD2	23299	genome.wustl.edu	37	9	95491390	95491390	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001003800.1	-1	reviewed	p.T123	0.769	81	0%	108	47.2%	19	57.8%	-	-	-	HMMPfam_BicD
FGD3	89846	genome.wustl.edu	37	9	95784648	95784648	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001083536.1	+1	validated	p.E512K	0.000	84	0%	88	51.1%	5	60%	benign(0.025)	tolerated(0.31)	neutral(0.028)	superfamily_FYVE/PHD zinc finger
WNK2	65268	genome.wustl.edu	37	9	96000548	96000548	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006648.3	+1	reviewed	p.D423N	0.999	237	0%	294	43.2%	65	58.4%	unknown(0)	tolerated(0.44)	-	superfamily_Kinase_like,HMMPfam_Pkinase
FAM120A	23196	genome.wustl.edu	37	9	96289454	96289454	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014612.3	+1	validated	p.K479R	1.000	100	0%	95	45.3%	236	47.8%	benign(0.15)	tolerated(0.11)	neutral(0.285)	NULL
PHF2	5253	genome.wustl.edu	37	9	96408059	96408059	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005392.3	+1	reviewed	p.E150K	0.998	28	0%	50	48%	37	48.6%	probably_damaging(0.969)	deleterious(0)	deleterious(0.856)	superfamily_SSF51197
BARX1	56033	genome.wustl.edu	37	9	96714554	96714554	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021570.3	-1	reviewed	p.K219N	1.000	62	0%	90	43.3%	0	-	probably_damaging(1)	tolerated(0.18)	deleterious(0.556)	NULL
MIRLET7F1	406888	genome.wustl.edu	37	9	96938698	96938698	+	RNA	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000362202	+1	known	NULL	1.000	293	0%	451	53%	0	-	-	-	-	-
FBP1	2203	genome.wustl.edu	37	9	97382706	97382706	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000507.3	-1	reviewed	p.D80N	1.000	122	0%	194	12.4%	20	15%	benign(0)	deleterious(0.03)	neutral(0.364)	HMMPfam_FBPase,superfamily_Carbohydrate phosphatase
MIR27B	407019	genome.wustl.edu	37	9	97847817	97847817	+	RNA	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000385129	+1	known	NULL	1.000	90	0%	97	40.2%	0	-	-	-	-	-
C9orf102	375748	genome.wustl.edu	37	9	98728883	98728883	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001010895.2	+1	validated	p.R674*	1.000	248	0%	311	41.5%	2	0%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
C9orf102	375748	genome.wustl.edu	37	9	98775222	98775222	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000407474	+1	known	p.L445I	0.283	63	0%	69	53.6%	2	100%	possibly_damaging(0.923)	tolerated(0.37)	neutral(0.392)	NULL
HSD17B3	3293	genome.wustl.edu	37	9	99017151	99017151	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000197.1	-1	reviewed	p.I92	1.000	176	0%	227	38.8%	4	25%	-	-	-	HMMPfam_adh_short,superfamily_NAD(P)-binding Rossmann-fold domains
ZNF367	195828	genome.wustl.edu	37	9	99154788	99154788	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_153695.3	-1	validated	p.R241H	1.000	215	0%	258	41.1%	6	50%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	superfamily_C2H2 and C2HC zinc fingers
ZNF510	22869	genome.wustl.edu	37	9	99522515	99522515	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014930.1	-1	provisional	p.K199	0.173	93	0%	115	33.9%	0	-	-	-	-	NULL
FAM22G	441457	genome.wustl.edu	37	9	99700669	99700669	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000372322	+1	known	p.S488	0.174	42	0%	60	31.7%	0	-	-	-	-	NULL
CTSL2	1515	genome.wustl.edu	37	9	99799643	99799643	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001333.2	-1	reviewed	p.R96Q	0.469	213	0%	306	49%	84	40.4%	benign(0.002)	tolerated(0.33)	neutral(0.024)	superfamily_SSF54001
CTSL2	1515	genome.wustl.edu	37	9	99800319	99800319	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001333.2	-1	reviewed	p.L3I	0.125	166	0%	154	48.7%	54	61.1%	benign(0.3)	tolerated(0.36)	neutral(0.113)	NULL
TMOD1	7111	genome.wustl.edu	37	9	100353693	100353693	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003275.3	+1	reviewed	p.A331T	1.000	114	0%	141	48.2%	22	36.3%	probably_damaging(0.996)	tolerated(0.19)	deleterious(0.511)	HMMPfam_Tropomodulin,superfamily_SSF52047
XPA	7507	genome.wustl.edu	37	9	100451874	100451874	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000380.3	-1	reviewed	p.E111*	1.000	297	0%	410	44.9%	0	-	-	-	-	HMMPfam_XPA_N,PatternScan_XPA_1,superfamily_SSF57716
NANS	54187	genome.wustl.edu	37	9	100840569	100840569	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018946.3	+1	reviewed	p.F181L	1.000	142	0%	176	41.5%	360	45.5%	benign(0)	tolerated(1)	-	HMMPfam_NeuB,superfamily_Aldolase
TRIM14	9830	genome.wustl.edu	37	9	100854205	100854205	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014788.2	-1	reviewed	p.S260L	0.796	355	0%	419	15%	6	16.6%	probably_damaging(0.955)	tolerated(0.12)	deleterious(0.659)	NULL
GABBR2	9568	genome.wustl.edu	37	9	101243220	101243220	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005458.7	-1	reviewed	p.F264L	1.000	98	0%	112	41.1%	0	-	possibly_damaging(0.917)	tolerated(0.36)	neutral(0.388)	HMMPfam_ANF_receptor,superfamily_SSF53822
GALNT12	79695	genome.wustl.edu	37	9	101589121	101589121	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024642.3	+1	validated	p.R210Q	1.000	94	0%	115	49.6%	20	45%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMPfam_Glycos_transf_2,superfamily_Nucleotide-diphospho-sugar transferases
GALNT12	79695	genome.wustl.edu	37	9	101597633	101597633	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024642.3	+1	validated	p.L340	1.000	483	0%	554	43.9%	22	36.3%	-	-	-	superfamily_Nucleotide-diphospho-sugar transferases
TEX10	54881	genome.wustl.edu	37	9	103091475	103091475	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017746.3	-1	validated	p.L524F	0.997	271	0%	322	42.5%	2	100%	possibly_damaging(0.8)	deleterious(0.03)	deleterious(0.665)	NULL
ZNF189	7743	genome.wustl.edu	37	9	104170433	104170433	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003452.2	+1	validated	p.R128I	0.108	135	0%	178	20.8%	5	20%	benign(0.132)	tolerated(0.21)	neutral(0.055)	NULL
ZNF189	7743	genome.wustl.edu	37	9	104171625	104171625	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003452.2	+1	validated	p.C525	0.804	192	0%	279	41.9%	5	20%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
SMC2	10592	genome.wustl.edu	37	9	106901468	106901468	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001042550.1	+1	validated	p.L1156I	1.000	229	0%	293	42%	30	50%	probably_damaging(0.964)	deleterious(0)	deleterious(0.851)	HMMPfam_SMC_N,superfamily_P-loop containing nucleoside triphosphate hydrolases
NIPSNAP3B	55335	genome.wustl.edu	37	9	107535138	107535138	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018376.2	+1	provisional	p.R206C	0.998	542	0%	761	46.6%	26	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_NIPSNAP
ABCA1	19	genome.wustl.edu	37	9	107550735	107550735	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005502.2	-1	reviewed	p.R2014K	1.000	117	0%	139	50.4%	13	30.7%	possibly_damaging(0.796)	tolerated(0.08)	deleterious(0.599)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCA1	19	genome.wustl.edu	37	9	107607780	107607780	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005502.2	-1	reviewed	p.S264I	1.000	232	0.4%	297	49.2%	7	28.5%	possibly_damaging(0.673)	tolerated(0.05)	deleterious(0.585)	NULL
FSD1L	83856	genome.wustl.edu	37	9	108270937	108270937	+	Missense_Mutation	SNP	G	G	A	rs184353818	by1000genomes	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001145313.1	+1	validated	p.R279Q	1.000	326	0%	435	40.7%	0	-	benign(0.171)	deleterious(0.01)	neutral(0.421)	HMMPfam_fn3,superfamily_Fibronectin type III
FKTN	2218	genome.wustl.edu	37	9	108397407	108397407	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000457847	+1	known	p.S113L	0.009	254	0.8%	334	45.2%	1	100%	-	-	-	HMMPfam_LicD
ZNF462	58499	genome.wustl.edu	37	9	109686692	109686692	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021224.4	+1	validated	p.C167R	1.000	37	0%	29	48.3%	1	100%	unknown(0)	deleterious(0)	-	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF462	58499	genome.wustl.edu	37	9	109688821	109688821	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021224.4	+1	validated	p.I876	1.000	88	0%	160	43.1%	8	62.5%	-	-	-	superfamily_beta-sandwich domain of Sec23/24
RAD23B	5887	genome.wustl.edu	37	9	110064335	110064335	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002874.3	+1	reviewed	p.D56	0.999	297	0%	351	46.4%	80	43.7%	-	-	-	HMMPfam_ubiquitin,HMMSmart_SM00213,superfamily_Ubiquitin-like
KLF4	9314	genome.wustl.edu	37	9	110251228	110251228	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004235.4	-1	validated	p.A37S	0.999	25	0%	15	46.7%	17	35.2%	probably_damaging(0.957)	tolerated(0.13)	deleterious(0.653)	NULL
IKBKAP	8518	genome.wustl.edu	37	9	111679935	111679935	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003640.3	-1	reviewed	p.L252F	1.000	384	0%	410	43.4%	7	42.8%	probably_damaging(1)	tolerated(0.22)	deleterious(0.542)	HMMPfam_IKI3,superfamily_Amine_DH_B_like
CTNNAL1	8727	genome.wustl.edu	37	9	111741632	111741632	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003798.2	-1	provisional	p.E344*	0.998	355	0%	454	44.9%	7	0%	-	-	-	superfamily_alpha-catenin/vinculin
TMEM245	23731	genome.wustl.edu	37	9	111800390	111800390	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032012.3	-1	validated	p.F711L	1.000	161	0%	202	17.8%	11	18.1%	probably_damaging(0.998)	tolerated(0.12)	deleterious(0.735)	NULL
TMEM245	23731	genome.wustl.edu	37	9	111848280	111848280	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032012.3	-1	validated	p.K447N	1.000	265	0%	354	13%	0	-	probably_damaging(0.998)	tolerated(0.39)	deleterious(0.490)	NULL
EPB41L4B	54566	genome.wustl.edu	37	9	112005906	112005906	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_019114.3	-1	validated	p.P467	0.992	251	0%	296	17.2%	84	21.4%	-	-	-	NULL
PALM2	114299	genome.wustl.edu	37	9	112705283	112705283	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_053016.5	+1	validated	p.E274*	1.000	81	0%	80	40%	0	-	-	-	-	HMMPfam_Paralemmin
PALM2	114299	genome.wustl.edu	37	9	112705679	112705679	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_053016.5	+1	validated	p.R406C	1.000	155	0%	185	44.9%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Paralemmin
SVEP1	79987	genome.wustl.edu	37	9	113169527	113169527	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_153366.3	-1	validated	p.S2785P	0.000	56	0%	98	52%	4	0%	possibly_damaging(0.488)	tolerated(0.22)	neutral(0.205)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
SVEP1	79987	genome.wustl.edu	37	9	113192643	113192643	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_153366.3	-1	validated	p.S1814L	0.994	144	0%	225	50.7%	0	-	probably_damaging(0.978)	tolerated(0.28)	neutral(0.452)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
KIAA0368	23392	genome.wustl.edu	37	9	114125892	114125892	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001080398.1	-1	provisional	p.E1964*	1.000	312	0.3%	333	20.4%	20	15%	-	-	-	superfamily_ARM repeat
KIAA0368	23392	genome.wustl.edu	37	9	114148712	114148712	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001080398.1	-1	provisional	p.L1336I	1.000	143	0%	151	44.4%	8	62.5%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_HEAT,superfamily_ARM repeat
KIAA0368	23392	genome.wustl.edu	37	9	114202714	114202714	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001080398.1	-1	provisional	p.E337D	1.000	282	0%	366	14.2%	2	50%	possibly_damaging(0.933)	tolerated(0.44)	neutral(0.392)	superfamily_ARM repeat
ZNF483	158399	genome.wustl.edu	37	9	114305320	114305320	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_133464.2	+1	validated	p.R702Q	0.199	74	0%	96	39.6%	0	-	probably_damaging(0.996)	tolerated(1)	neutral(0.462)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
LRRC37A5P	652972	genome.wustl.edu	37	9	114371477	114371477	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000374306	-1	known	p.V44A	0.471	139	0%	246	32.5%	0	-	possibly_damaging(0.448)	deleterious(0.01)	deleterious(0.552)	NULL
C9orf84	158401	genome.wustl.edu	37	9	114453996	114453996	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_173521.3	-1	validated	p.E1357*	0.561	159	0%	209	50.2%	0	-	-	-	-	NULL
C9orf84	158401	genome.wustl.edu	37	9	114468963	114468963	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_173521.3	-1	validated	p.F810L	1.000	198	0%	220	45%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
C9orf84	158401	genome.wustl.edu	37	9	114489944	114489944	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_173521.3	-1	validated	p.K537N	0.073	190	0%	301	45.8%	0	-	benign(0.139)	tolerated(0.19)	neutral(0.061)	NULL
SUSD1	64420	genome.wustl.edu	37	9	114911578	114911578	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000374263	-1	known	p.R107*	1.000	199	0%	300	52.3%	7	14.2%	-	-	-	HMMSmart_EGF_CA,HMMPfam_EGF_CA,superfamily_SSF57196
PTBP3	9991	genome.wustl.edu	37	9	115030399	115030399	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005156.5	-1	validated	p.R122Q	1.000	219	0%	260	44.2%	9	55.5%	possibly_damaging(0.897)	deleterious(0)	deleterious(0.798)	HMMSmart_SM00360,superfamily_RNA-binding domain RBD
PTBP3	9991	genome.wustl.edu	37	9	115030400	115030400	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005156.5	-1	validated	p.R122*	1.000	215	0%	247	46.6%	9	44.4%	-	-	-	HMMSmart_SM00360,superfamily_RNA-binding domain RBD
RGS3	5998	genome.wustl.edu	37	9	116303692	116303692	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017790.3	+1	reviewed	p.Q598H	1.000	159	0%	201	28.4%	3	0%	possibly_damaging(0.519)	deleterious(0)	deleterious(0.619)	NULL
ZNF618	114991	genome.wustl.edu	37	9	116811669	116811669	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_133374.2	+1	validated	p.S603L	0.996	34	0%	50	36%	21	9.5%	probably_damaging(0.956)	deleterious(0)	deleterious(0.844)	NULL
COL27A1	85301	genome.wustl.edu	37	9	117063378	117063378	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032888.2	+1	validated	p.L1576	0.005	86	1.2%	96	47.9%	2	50%	-	-	-	HMMPfam_Collagen
AKNA	80709	genome.wustl.edu	37	9	117110140	117110140	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_030767.4	-1	validated	p.R1088C	0.875	15	0%	31	51.6%	13	30.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DFNB31	25861	genome.wustl.edu	37	9	117166287	117166287	+	Silent	SNP	G	G	A	rs148971049	by1000genomes	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015404.3	-1	reviewed	p.G769	0.032	60	0%	59	45.8%	23	52.1%	-	-	-	NULL
DFNB31	25861	genome.wustl.edu	37	9	117240779	117240779	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000374057	-1	known	p.P297	0.000	74	2.7%	136	40.4%	4	0%	-	-	-	NULL
TNFSF8	944	genome.wustl.edu	37	9	117666452	117666452	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001244.2	-1	reviewed	p.S155Y	0.025	237	0%	362	45%	0	-	possibly_damaging(0.805)	deleterious(0.03)	deleterious(0.667)	HMMPfam_TNF,HMMSmart_SM00207,superfamily_TNF-like
TNC	3371	genome.wustl.edu	37	9	117827186	117827186	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002160.2	-1	validated	p.E1076G	0.995	89	0%	89	43.8%	41	9.7%	benign(0.039)	tolerated(0.21)	neutral(0.046)	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
PAPPA	5069	genome.wustl.edu	37	9	118949691	118949691	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002581.3	+1	reviewed	p.G225D	1.000	44	0%	53	15.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_LamGL,superfamily_ConA_like_lec_gl
ASTN2	23245	genome.wustl.edu	37	9	119202920	119202920	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000417725	-1	known	p.S32L	0.996	162	0%	216	45.4%	10	60%	-	-	-	NULL
TLR4	7099	genome.wustl.edu	37	9	120475190	120475190	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_138554.3	+1	reviewed	p.E262*	1.000	89	0%	101	36.6%	0	-	-	-	-	superfamily_L domain-like
LOC389787	389787	genome.wustl.edu	37	9	120845348	120845348	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_001725747.2	-1	model	p.E71K	1.000	232	0%	238	40.8%	0	-	-	-	-	HMMPfam_TCTP,superfamily_Mss4-like
CDK5RAP2	55755	genome.wustl.edu	37	9	123280905	123280905	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018249.4	-1	reviewed	p.T371A	0.002	145	0%	210	35.2%	7	57.1%	benign(0)	tolerated(0.8)	neutral(0.001)	NULL
C5	727	genome.wustl.edu	37	9	123737135	123737135	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001735.2	-1	reviewed	p.I1313	0.514	241	0%	349	43.6%	0	-	-	-	-	NULL
C5	727	genome.wustl.edu	37	9	123739106	123739106	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001735.2	-1	reviewed	p.R1246C	0.002	218	0%	282	41.8%	0	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	superfamily_Terp_cyc_toroid,HMMPfam_A2M_comp
C5	727	genome.wustl.edu	37	9	123745015	123745015	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001735.2	-1	reviewed	p.S1103Y	0.933	218	0%	252	40.9%	0	-	possibly_damaging(0.943)	deleterious(0.01)	deleterious(0.793)	superfamily_Terp_cyc_toroid,HMMPfam_A2M_comp
CNTRL	11064	genome.wustl.edu	37	9	123852640	123852640	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007018.4	+1	reviewed	p.S102Y	1.000	278	0%	314	49%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GSN	2934	genome.wustl.edu	37	9	124065295	124065295	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000177.4	+1	reviewed	p.F152	0.162	31	0%	35	17.1%	595	10%	-	-	-	HMMSmart_SM00262,HMMPfam_Gelsolin,superfamily_Actin depolymerizing proteins
NDUFA8	4702	genome.wustl.edu	37	9	124914529	124914529	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014222.2	-1	reviewed	p.F70L	1.000	211	0%	203	38.4%	169	41.4%	probably_damaging(1)	tolerated(0.13)	deleterious(0.752)	NULL
RABGAP1	23637	genome.wustl.edu	37	9	125861822	125861822	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012197.3	+1	validated	p.K961N	0.997	322	0%	379	47%	16	50%	benign(0.001)	tolerated(0.44)	neutral(0.013)	NULL
STRBP	55342	genome.wustl.edu	37	9	125920294	125920294	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018387.4	-1	validated	p.E348*	1.000	240	0%	310	39.7%	13	7.6%	-	-	-	NULL
HSPA5	3309	genome.wustl.edu	37	9	127999117	127999117	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005347.3	-1	validated	p.K573N	1.000	376	0%	416	45.4%	68	47%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_HSP70,superfamily_Heat shock protein 70kD (HSP70) C-terminal subdomain
PBX3	5090	genome.wustl.edu	37	9	128724449	128724449	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006195.5	+1	validated	p.D360N	1.000	236	0%	304	40.5%	1	0%	probably_damaging(0.988)	tolerated(0.05)	deleterious(0.783)	NULL
ZBTB43	23099	genome.wustl.edu	37	9	129595863	129595863	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001135776.1	+1	validated	p.E359*	1.000	85	0%	68	48.5%	2	0%	-	-	-	NULL
ANGPTL2	23452	genome.wustl.edu	37	9	129870902	129870902	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012098.2	-1	reviewed	p.E37*	0.999	29	0%	48	31.2%	23	4.3%	-	-	-	NULL
LRSAM1	90678	genome.wustl.edu	37	9	130241221	130241221	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001005373.1	+1	validated	p.F253L	1.000	136	0%	178	48.3%	5	100%	benign(0.366)	tolerated(0.45)	neutral(0.129)	NULL
LRSAM1	90678	genome.wustl.edu	37	9	130255091	130255091	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001005373.1	+1	validated	p.S505L	0.946	41	0%	65	46.2%	7	0%	possibly_damaging(0.621)	tolerated(0.16)	neutral(0.276)	NULL
STXBP1	6812	genome.wustl.edu	37	9	130442503	130442503	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003165.3	+1	reviewed	p.F510C	1.000	330	0%	397	44.6%	3	0%	benign(0.175)	tolerated(0.18)	neutral(0.072)	HMMPfam_Sec1,superfamily_Sec1/munc18-like (SM) proteins
FPGS	2356	genome.wustl.edu	37	9	130573264	130573264	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004957.4	+1	reviewed	p.T443K	1.000	61	0%	104	47.1%	110	39%	benign(0.344)	tolerated(0.06)	neutral(0.431)	HMMPfam_Mur_ligase_C
ODF2	4957	genome.wustl.edu	37	9	131231610	131231610	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002540.3	+1	reviewed	p.A109V	0.778	206	0%	310	26.5%	38	34.2%	benign(0)	tolerated(0.39)	neutral(0.016)	NULL
SPTAN1	6709	genome.wustl.edu	37	9	131336976	131336976	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001130438.1	+1	validated	p.R129H	1.000	260	0%	386	45.1%	16	37.5%	possibly_damaging(0.94)	tolerated(0.23)	neutral(0.426)	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
SPTAN1	6709	genome.wustl.edu	37	9	131339203	131339203	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001130438.1	+1	validated	p.L251	0.985	128	0%	164	50%	27	51.8%	-	-	-	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
DOLK	22845	genome.wustl.edu	37	9	131708618	131708618	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014908.3	-1	reviewed	p.R322L	1.000	69	0%	94	59.6%	37	43.2%	probably_damaging(0.98)	deleterious(0.04)	deleterious(0.773)	NULL
SH3GLB2	56904	genome.wustl.edu	37	9	131771610	131771610	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020145.2	-1	provisional	p.F285	0.896	39	0%	40	12.5%	358	6.7%	-	-	-	superfamily_SH3-domain
METTL11A	28989	genome.wustl.edu	37	9	132396444	132396444	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014064.2	+1	validated	p.I92V	1.000	59	0%	84	48.8%	70	44.2%	benign(0)	tolerated(0.52)	neutral(0.009)	HMMPfam_DUF858,superfamily_SSF53335
ASB6	140459	genome.wustl.edu	37	9	132400261	132400261	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017873.2	-1	reviewed	p.I358	1.000	58	0%	63	11.1%	26	15.3%	-	-	-	NULL
ASB6	140459	genome.wustl.edu	37	9	132401756	132401756	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017873.2	-1	reviewed	p.I109	0.430	54	0%	64	29.7%	48	45.8%	-	-	-	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
PTGES	9536	genome.wustl.edu	37	9	132501975	132501975	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004878.4	-1	reviewed	p.I125T	0.990	62	0%	64	37.5%	6	16.6%	benign(0)	tolerated(0.81)	neutral(0.001)	HMMPfam_MAPEG
USP20	10868	genome.wustl.edu	37	9	132631997	132631997	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001008563.3	+1	validated	p.P480H	1.000	17	0%	38	15.8%	22	0%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_UCH,superfamily_SSF54001
FNBP1	23048	genome.wustl.edu	37	9	132671210	132671210	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000449089	-1	known	p.S370L	0.782	520	0%	650	44%	1	100%	-	-	-	NULL
GPR107	57720	genome.wustl.edu	37	9	132854651	132854651	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001136557.1	+1	validated	p.R285Q	1.000	280	0%	389	42.4%	6	66.6%	probably_damaging(1)	tolerated(0.32)	deleterious(0.524)	HMMPfam_Lung_7-TM_R
LAMC3	10319	genome.wustl.edu	37	9	133901955	133901955	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006059.3	+1	reviewed	p.F219	0.963	5	0.000	12	0.417	11	0%	-	-	-	HMMPfam_Laminin_N,HMMSmart_LamNT
SETX	23064	genome.wustl.edu	37	9	135204702	135204702	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015046.5	-1	reviewed	p.S761	0.031	128	0%	128	41.4%	0	-	-	-	-	NULL
SETX	23064	genome.wustl.edu	37	9	135205590	135205590	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015046.5	-1	reviewed	p.V465	1.000	78	0%	96	12.5%	1	0%	-	-	-	NULL
TTF1	7270	genome.wustl.edu	37	9	135271860	135271860	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007344.2	-1	validated	p.R606*	0.913	299	0%	399	16.8%	6	16.6%	-	-	-	NULL
TTF1	7270	genome.wustl.edu	37	9	135277803	135277803	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007344.2	-1	validated	p.L136	0.000	114	0%	159	39.6%	2	0%	-	-	-	NULL
BARHL1	56751	genome.wustl.edu	37	9	135458372	135458372	+	Missense_Mutation	SNP	C	C	A	rs111444940		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020064.3	+1	validated	p.T63N	0.978	15	0%	26	46.2%	0	-	benign(0.001)	tolerated(0.31)	neutral(0.027)	NULL
GTF3C4	9329	genome.wustl.edu	37	9	135553703	135553703	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012204.2	+1	validated	p.L233I	0.900	91	0%	78	42.3%	4	25%	probably_damaging(0.979)	tolerated(0.06)	deleterious(0.744)	NULL
AK8	158067	genome.wustl.edu	37	9	135703435	135703435	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152572.2	-1	validated	p.R174I	1.000	84	0%	150	20%	4	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ADK,superfamily_P-loop containing nucleoside triphosphate hydrolases
AK8	158067	genome.wustl.edu	37	9	135739118	135739118	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152572.2	-1	validated	p.E89D	0.004	265	0%	302	46%	4	75%	benign(0.001)	tolerated(0.95)	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
RALGDS	5900	genome.wustl.edu	37	9	135982593	135982593	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006266.2	-1	validated	p.R431H	1.000	49	0%	84	45.2%	115	46%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF
SURF4	6836	genome.wustl.edu	37	9	136230467	136230467	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033161.2	-1	reviewed	p.D238N	1.000	153	0%	209	45%	184	37.5%	probably_damaging(0.966)	deleterious(0)	deleterious(0.853)	HMMPfam_SURF4,PatternScan_SURF4
SURF4	6836	genome.wustl.edu	37	9	136231826	136231826	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033161.2	-1	reviewed	p.V145I	1.000	58	0%	79	55.7%	131	51.1%	benign(0.309)	tolerated(0.08)	neutral(0.396)	HMMPfam_SURF4
SURF4	6836	genome.wustl.edu	37	9	136234204	136234204	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033161.2	-1	reviewed	p.D56N	0.998	70	0%	57	40.4%	843	43.7%	benign(0)	tolerated(0.3)	neutral(0.029)	HMMPfam_SURF4
TMEM8C	389827	genome.wustl.edu	37	9	136384098	136384098	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001080483.2	-1	validated	p.F99L	0.975	73	0%	93	47.3%	0	-	benign(0.008)	tolerated(1)	-	NULL
VAV2	7410	genome.wustl.edu	37	9	136804238	136804238	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001134398.1	-1	reviewed	p.R103Q	1.000	143	0%	175	35.4%	58	41.3%	probably_damaging(0.984)	tolerated(0.42)	neutral(0.445)	HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain
COL5A1	1289	genome.wustl.edu	37	9	137591804	137591804	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000093.3	+1	reviewed	p.K109N	1.000	112	0%	147	44.2%	21	0%	unknown(0)	deleterious(0.01)	-	HMMSmart_LamG,HMMSmart_TSPN,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2
OLFM1	10439	genome.wustl.edu	37	9	138011607	138011607	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014279.4	+1	validated	p.Y329	1.000	44	0%	68	58.8%	12	0%	-	-	-	HMMPfam_OLF,HMMSmart_OLF
C9orf116	138162	genome.wustl.edu	37	9	138387442	138387442	+	Missense_Mutation	SNP	G	G	A	rs141771436	by1000genomes	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001048265.1	-1	validated	p.S81L	0.001	230	0%	242	42.1%	20	45%	possibly_damaging(0.674)	tolerated(0.5)	neutral(0.249)	NULL
CAMSAP1	157922	genome.wustl.edu	37	9	138703329	138703329	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015447.3	-1	validated	p.K1545	1.000	444	0%	570	17.2%	18	5.5%	-	-	-	superfamily_PRC-barrel domain,HMMPfam_DUF1781
CAMSAP1	157922	genome.wustl.edu	37	9	138710423	138710423	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015447.3	-1	validated	p.E1333D	1.000	50	0%	71	47.9%	26	80.7%	probably_damaging(1)	tolerated(0.23)	deleterious(0.541)	NULL
CAMSAP1	157922	genome.wustl.edu	37	9	138713422	138713422	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015447.3	-1	validated	p.E1029K	1.000	52	0%	66	47%	22	63.6%	probably_damaging(1)	tolerated(0.15)	deleterious(0.741)	NULL
CAMSAP1	157922	genome.wustl.edu	37	9	138714016	138714016	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015447.3	-1	validated	p.K831E	1.000	24	0%	36	36.1%	9	33.3%	possibly_damaging(0.824)	tolerated(0.87)	neutral(0.312)	NULL
SEC16A	9919	genome.wustl.edu	37	9	139341721	139341721	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014866.1	-1	validated	p.A2219T	1.000	29	0%	34	17.6%	122	25.4%	possibly_damaging(0.93)	deleterious(0)	deleterious(0.821)	NULL
SEC16A	9919	genome.wustl.edu	37	9	139359005	139359005	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014866.1	-1	validated	p.R1438I	1.000	54	0%	89	38.2%	45	44.4%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
NOTCH1	4851	genome.wustl.edu	37	9	139397647	139397647	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017617.3	-1	reviewed	p.I1718	1.000	37	0%	57	47.4%	29	44.8%	-	-	-	HMMPfam_NODP
LCN10	414332	genome.wustl.edu	37	9	139635349	139635349	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001001712.2	-1	validated	p.Y138	0.000	62	0%	83	42.2%	0	-	-	-	-	superfamily_Calycin
C9orf86	55684	genome.wustl.edu	37	9	139733422	139733422	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024718.4	+1	validated	p.E448K	0.995	19	0%	20	55%	118	39.8%	possibly_damaging(0.737)	deleterious(0.02)	deleterious(0.653)	NULL
FBXW5	54461	genome.wustl.edu	37	9	139835553	139835553	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018998.2	-1	reviewed	p.E510K	1.000	42	0%	61	47.5%	747	41.3%	benign(0.01)	tolerated(0.57)	neutral(0.007)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
ANAPC2	29882	genome.wustl.edu	37	9	140080712	140080712	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_013366.3	-1	reviewed	p.G279	0.995	18	0%	15	26.7%	44	9%	-	-	-	NULL
SLC34A3	142680	genome.wustl.edu	37	9	140129139	140129139	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_080877.2	+1	reviewed	p.A431T	1.000	23	0%	16	31.2%	2	50%	possibly_damaging(0.793)	deleterious(0)	deleterious(0.742)	HMMPfam_Na_Pi_cotrans
ARRDC1	92714	genome.wustl.edu	37	9	140508801	140508801	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152285.2	+1	validated	p.A223	0.001	26	0%	39	53.8%	365	41.9%	-	-	-	HMMPfam_Arrestin_C,superfamily_Ig_E-set
EHMT1	79813	genome.wustl.edu	37	9	140685306	140685306	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000460843	+1	known	p.A797T	1.000	159	0%	162	43.2%	43	58.1%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
CACNA1B	774	genome.wustl.edu	37	9	140807654	140807654	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000718.2	+1	validated	p.D185Y	1.000	100	0%	133	34.6%	0	-	possibly_damaging(0.697)	deleterious(0.01)	deleterious(0.655)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CACNA1B	774	genome.wustl.edu	37	9	140852080	140852080	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000718.2	+1	validated	p.R425I	0.985	147	0%	198	37.9%	0	-	benign(0.106)	deleterious(0.01)	neutral(0.414)	NULL
CACNA1B	774	genome.wustl.edu	37	9	140907682	140907682	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000718.2	+1	validated	p.I754	0.287	63	0%	73	23.3%	0	-	-	-	-	NULL
CACNA1B	774	genome.wustl.edu	37	9	140954188	140954188	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000718.2	+1	validated	p.A1556V	1.000	397	0%	419	44.2%	0	-	benign(0.048)	deleterious(0.01)	neutral(0.409)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
FAM157B	100132403	genome.wustl.edu	37	9	141109872	141109872	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001145249.1	+1	inferred	p.T167	0.003	183	0.5%	277	42.6%	0	-	-	-	-	NULL
DIP2C	22982	genome.wustl.edu	37	10	403782	403782	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014974.2	-1	reviewed	p.D964N	1.000	70	1.4%	69	37.7%	19	57.8%	benign(0.118)	tolerated(0.24)	neutral(0.047)	NULL
DIP2C	22982	genome.wustl.edu	37	10	445153	445153	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014974.2	-1	reviewed	p.L386	1.000	65	0%	105	46.7%	6	16.6%	-	-	-	HMMPfam_AMP-binding,superfamily_SSF56801
GTPBP4	23560	genome.wustl.edu	37	10	1058580	1058580	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012341.2	+1	reviewed	p.R507K	1.000	167	0%	150	26%	29	31%	benign(0)	tolerated(0.61)	neutral(0.004)	NULL
IDI1	3422	genome.wustl.edu	37	10	1089276	1089276	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004508.2	-1	validated	p.L124R	1.000	266	0%	320	26.9%	18	22.2%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_NUDIX,superfamily_NUDIX_hydrolase
IDI1	3422	genome.wustl.edu	37	10	1090107	1090107	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004508.2	-1	validated	p.L49I	0.000	342	0%	451	18.2%	7	28.5%	benign(0.011)	deleterious(0.04)	neutral(0.349)	NULL
ADARB2	105	genome.wustl.edu	37	10	1279778	1279778	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018702.2	-1	reviewed	p.R457	0.645	108	0%	154	46.8%	0	-	-	-	-	HMMPfam_A_deamin,HMMSmart_ADEAMc
PITRM1	10531	genome.wustl.edu	37	10	3181185	3181185	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014889.2	-1	validated	p.K943T	0.960	176	0%	201	37.3%	145	51.7%	possibly_damaging(0.833)	tolerated(0.41)	neutral(0.333)	HMMPfam_Peptidase_M16_C,superfamily_LuxS/MPP-like metallohydrolase
PITRM1	10531	genome.wustl.edu	37	10	3202470	3202470	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014889.2	-1	validated	p.E282K	0.998	305	0%	309	90.3%	44	95.4%	benign(0.003)	tolerated(0.67)	neutral(0.003)	HMMPfam_Peptidase_M16_C,superfamily_LuxS/MPP-like metallohydrolase
KLF6	1316	genome.wustl.edu	37	10	3824209	3824209	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001300.5	-1	reviewed	p.E100	1.000	159	0%	208	42.3%	7	14.2%	-	-	-	NULL
AKR1E2	83592	genome.wustl.edu	37	10	4877951	4877951	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001040177.1	+1	provisional	p.E137K	0.015	68	0%	117	44.4%	0	-	benign(0.004)	tolerated(0.17)	neutral(0.059)	HMMPfam_Aldo_ket_red,superfamily_NAD(P)-linked oxidoreductase
AKR1C1	1645	genome.wustl.edu	37	10	5011111	5011111	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001353.5	+1	reviewed	p.L182R	1.000	258	0%	272	48.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Aldo_ket_red,superfamily_Aldo/ket_red
SFMBT2	57713	genome.wustl.edu	37	10	7318862	7318862	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001029880.1	-1	provisional	p.V288L	1.000	209	0%	252	38.9%	0	-	probably_damaging(0.989)	tolerated(1)	neutral(0.440)	HMMSmart_SM00561,superfamily_Tudor/PWWP/MBT
KIN	22944	genome.wustl.edu	37	10	7798091	7798091	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012311.2	-1	reviewed	p.G378	1.000	159	0%	145	43.4%	0	-	-	-	-	NULL
TAF3	83860	genome.wustl.edu	37	10	8007069	8007069	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_031923.2	+1	provisional	p.K532N	1.000	45	0%	47	29.8%	2	0%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	NULL
UPF2	26019	genome.wustl.edu	37	10	12009363	12009363	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015542.2	-1	reviewed	p.N682H	1.000	294	0%	350	16.6%	10	10%	benign(0.007)	tolerated(0.58)	neutral(0.005)	HMMPfam_MIF4G,HMMSmart_SM00543,superfamily_ARM repeat
CAMK1D	57118	genome.wustl.edu	37	10	12870807	12870807	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_153498.2	+1	reviewed	p.S360L	0.932	107	0%	110	18.2%	0	-	benign(0.141)	tolerated(0.06)	neutral(0.335)	NULL
BEND7	222389	genome.wustl.edu	37	10	13534784	13534784	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152751.2	-1	validated	p.P170S	0.929	109	0%	136	47.1%	0	-	possibly_damaging(0.512)	tolerated(0.57)	neutral(0.178)	NULL
PRPF18	8559	genome.wustl.edu	37	10	13642285	13642285	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003675.3	+1	reviewed	p.S62	0.038	224	0%	299	40.1%	5	80%	-	-	-	NULL
FAM107B	83641	genome.wustl.edu	37	10	14816578	14816578	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_031453.2	-1	predicted	p.A29T	0.472	73	0%	104	34.6%	0	-	benign(0)	-	-	NULL
HSPA14	51182	genome.wustl.edu	37	10	14894493	14894493	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016299.2	+1	validated	p.E233*	1.000	239	0%	368	43.2%	8	12.5%	-	-	-	HMMPfam_HSP70,superfamily_Actin-like ATPase domain
OLAH	55301	genome.wustl.edu	37	10	15103873	15103873	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000378225	+1	known	p.S126Y	0.008	216	0%	253	42.7%	0	-	benign(0.113)	deleterious(0)	neutral(0.454)	NULL
RPP38	10557	genome.wustl.edu	37	10	15145813	15145813	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001097590.1	+1	validated	p.R167I	0.734	98	0%	127	19.7%	52	21.1%	possibly_damaging(0.949)	tolerated(0.14)	deleterious(0.643)	HMMPfam_Ribosomal_L7Ae,superfamily_SSF55315
PTER	9317	genome.wustl.edu	37	10	16553049	16553049	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001001484.1	+1	validated	p.R282C	0.996	181	0.6%	246	40.2%	10	30%	probably_damaging(0.953)	tolerated(0.18)	neutral(0.453)	HMMPfam_PTE,superfamily_Metallo-dependent hydrolases
CUBN	8029	genome.wustl.edu	37	10	16882399	16882399	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001081.3	-1	reviewed	p.T3321N	0.280	224	0%	276	43.8%	11	27.2%	possibly_damaging(0.833)	deleterious(0.04)	deleterious(0.666)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
CUBN	8029	genome.wustl.edu	37	10	16960713	16960713	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001081.3	-1	reviewed	p.S2303N	0.000	196	0%	229	49.8%	2	100%	benign(0.15)	tolerated(0.58)	neutral(0.018)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
CUBN	8029	genome.wustl.edu	37	10	17087978	17087978	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001081.3	-1	reviewed	p.D1149Y	0.000	276	0%	423	46.3%	2	100%	benign(0.002)	tolerated(0.85)	neutral(0.001)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
CUBN	8029	genome.wustl.edu	37	10	17110148	17110148	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001081.3	-1	reviewed	p.E975K	0.000	215	0%	312	45.5%	0	-	benign(0)	tolerated(0.93)	-	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
MRC1	4360	genome.wustl.edu	37	10	17875826	17875826	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001009567.1	+1	reviewed	p.T264P	1.000	69	0%	100	89%	0	-	benign(0.388)	deleterious(0.04)	deleterious(0.473)	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like
ARL5B	221079	genome.wustl.edu	37	10	18962973	18962973	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_178815.3	+1	validated	p.T134A	1.000	176	0%	246	42.7%	13	61.5%	benign(0.006)	tolerated(0.09)	neutral(0.296)	HMMSmart_SM00178,HMMSmart_SM00177,HMMPfam_Arf,superfamily_P-loop containing nucleoside triphosphate hydrolases
PLXDC2	84898	genome.wustl.edu	37	10	20465997	20465997	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032812.7	+1	provisional	p.S318L	1.000	167	0%	199	50.3%	51	33.3%	possibly_damaging(0.95)	deleterious(0)	deleterious(0.838)	NULL
NEBL	10529	genome.wustl.edu	37	10	21098812	21098812	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006393.2	-1	reviewed	p.R845L	1.000	200	0.5%	273	39.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NEBL	10529	genome.wustl.edu	37	10	21129745	21129745	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006393.2	-1	reviewed	p.K421Q	0.999	386	0%	445	24.7%	0	-	possibly_damaging(0.906)	tolerated(0.08)	deleterious(0.659)	HMMPfam_Nebulin
PIP4K2A	5305	genome.wustl.edu	37	10	22862255	22862255	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005028.4	-1	reviewed	p.R208	1.000	115	0.9%	155	47.1%	11	36.3%	-	-	-	HMMPfam_PIP5K,HMMSmart_SM00330,superfamily_SAICAR synthase-like
MSRB2	22921	genome.wustl.edu	37	10	23393122	23393122	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012228.3	+1	validated	p.K56N	1.000	141	0%	160	38.1%	51	39.2%	probably_damaging(0.959)	deleterious(0.04)	deleterious(0.752)	HMMPfam_SelR,superfamily_Mss4_like
KIAA1217	56243	genome.wustl.edu	37	10	24831891	24831891	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_019590.3	+1	validated	p.R1231I	0.007	64	0%	75	32%	6	33.3%	possibly_damaging(0.537)	deleterious(0.02)	deleterious(0.565)	NULL
KIAA1217	56243	genome.wustl.edu	37	10	24834820	24834820	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_019590.3	+1	validated	p.S1800Y	1.000	331	0%	405	40.5%	33	48.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ARHGAP21	57584	genome.wustl.edu	37	10	24878204	24878204	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020824.3	-1	validated	p.S1393Y	1.000	215	0%	239	39.7%	1	0%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
ARHGAP21	57584	genome.wustl.edu	37	10	24880896	24880896	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020824.3	-1	validated	p.R1308*	0.606	302	0%	402	42.5%	19	5.2%	-	-	-	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
THNSL1	79896	genome.wustl.edu	37	10	25312197	25312197	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024838.4	+1	validated	p.Q15	0.054	137	0%	148	44.6%	1	0%	-	-	-	NULL
THNSL1	79896	genome.wustl.edu	37	10	25313293	25313293	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024838.4	+1	validated	p.D381Y	1.000	229	0%	264	47%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PALP,superfamily_Tryptophan synthase beta subunit-like PLP-dependent enzymes
GPR158	57512	genome.wustl.edu	37	10	25887578	25887578	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020752.2	+1	validated	p.P1008H	1.000	55	0%	66	12.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MYO3A	53904	genome.wustl.edu	37	10	26241122	26241122	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017433.4	+1	reviewed	p.G28D	1.000	171	0%	200	33.5%	0	-	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	HMMSmart_S_TKc,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
MYO3A	53904	genome.wustl.edu	37	10	26492002	26492002	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017433.4	+1	reviewed	p.E1566*	0.971	135	0%	201	37.8%	0	-	-	-	-	NULL
ABI1	10006	genome.wustl.edu	37	10	27040543	27040543	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005470.3	-1	validated	p.K445N	0.998	228	0%	298	41.9%	21	38%	benign(0.148)	deleterious(0.01)	neutral(0.419)	superfamily_SH3-domain
YME1L1	10730	genome.wustl.edu	37	10	27400948	27400948	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_139312.1	-1	reviewed	p.E760D	1.000	548	0%	611	43.5%	22	45.4%	benign(0.029)	tolerated(0.36)	neutral(0.022)	HMMPfam_Peptidase_M41
MASTL	84930	genome.wustl.edu	37	10	27459222	27459222	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032844.3	+1	reviewed	p.R445I	1.000	71	0%	72	44.4%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Kinase_like
LOC100288039	100288039	genome.wustl.edu	37	10	27568184	27568184	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_002342965.1	+1	model	p.K97N	0.181	169	0%	251	44.6%	0	-	-	-	-	NULL
LOC100288039	100288039	genome.wustl.edu	37	10	27570252	27570252	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_002342965.1	+1	model	p.H116P	0.348	1176	0%	1320	21.7%	0	-	-	-	-	NULL
LOC100288039	100288039	genome.wustl.edu	37	10	27602735	27602735	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_002342965.1	+1	model	p.Q233	0.001	28	0%	24	41.7%	0	-	-	-	-	HMMPfam_Ank,superfamily_Ankyrin repeat
PTCHD3	374308	genome.wustl.edu	37	10	27687295	27687295	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001034842.3	-1	validated	p.I744	0.279	55	0%	62	41.9%	0	-	-	-	-	HMMPfam_Patched
PTCHD3	374308	genome.wustl.edu	37	10	27702995	27702995	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001034842.3	-1	validated	p.S62L	0.000	8	0.000	25	0.280	0	-	benign(0)	tolerated(0.11)	neutral(0.272)	NULL
MPP7	143098	genome.wustl.edu	37	10	28413985	28413985	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_173496.3	-1	validated	p.A161	0.225	312	0%	383	45.2%	1	100%	-	-	-	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ
WAC	51322	genome.wustl.edu	37	10	28884783	28884783	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016628.3	+1	reviewed	p.T244	1.000	132	0%	162	44.4%	75	30.6%	-	-	-	NULL
SVIL	6840	genome.wustl.edu	37	10	29769535	29769535	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021738.2	-1	reviewed	p.Q1770E	0.997	138	0%	176	47.2%	63	41.2%	benign(0.107)	tolerated(0.34)	neutral(0.032)	HMMSmart_SM00262,superfamily_Actin depolymerizing proteins
KIAA1462	57608	genome.wustl.edu	37	10	30316619	30316619	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020848.2	-1	validated	p.L820I	1.000	56	0%	80	42.5%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LYZL2	119180	genome.wustl.edu	37	10	30915092	30915092	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_183058.2	-1	validated	p.F126	0.019	151	0%	208	42.3%	0	-	-	-	-	HMMPfam_Lys,HMMSmart_LYZ1,superfamily_SSF53955
LOC645954	645954	genome.wustl.edu	37	10	30980151	30980151	+	RNA	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XR_017086.3	+1	model	NULL	0.982	96	0%	161	51.6%	0	-	-	-	-	-
ZNF438	220929	genome.wustl.edu	37	10	31138591	31138591	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001143766.1	-1	validated	p.S248Y	0.007	235	0%	317	15.5%	4	0%	possibly_damaging(0.711)	deleterious(0)	deleterious(0.702)	NULL
ZEB1	6935	genome.wustl.edu	37	10	31810359	31810359	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_030751.5	+1	reviewed	p.R699I	1.000	110	0%	155	27.7%	2	0%	possibly_damaging(0.502)	deleterious(0)	deleterious(0.612)	NULL
ARHGAP12	94134	genome.wustl.edu	37	10	32115310	32115310	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000454919	-1	known	p.E155*	1.000	233	0.4%	201	39.8%	10	60%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	superfamily_PH domain-like
KIF5B	3799	genome.wustl.edu	37	10	32324580	32324580	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004521.2	-1	validated	p.R278*	1.000	211	0%	260	43.1%	17	0%	-	-	-	HMMPfam_Kinesin,HMMSmart_KISc,superfamily_SSF52540
C10orf68	79741	genome.wustl.edu	37	10	33137639	33137639	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024688.2	+1	validated	p.E539D	0.000	122	0%	156	41.7%	0	-	possibly_damaging(0.791)	tolerated(0.28)	neutral(0.328)	NULL
ITGB1	3688	genome.wustl.edu	37	10	33197396	33197396	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000488427	-1	known	p.W12*	1.000	279	0%	337	41.8%	536	42.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PARD3	56288	genome.wustl.edu	37	10	34420423	34420423	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_019619.3	-1	validated	p.R1173C	1.000	420	0%	512	38.3%	24	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CREM	1390	genome.wustl.edu	37	10	35484998	35484998	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_182724.1	+1	reviewed	p.R3K	0.000	234	0%	296	40.5%	4	0%	benign(0.002)	deleterious(0)	neutral(0.445)	NULL
CCNY	219771	genome.wustl.edu	37	10	35819147	35819147	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_145012.4	+1	validated	p.T185	0.035	76	0%	107	50.5%	92	41.3%	-	-	-	HMMSmart_SM00385,HMMPfam_Cyclin_N,superfamily_Cyclin-like
ANKRD30A	91074	genome.wustl.edu	37	10	37438608	37438608	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_052997.2	+1	validated	e10+1	0.341	716	0%	946	45.8%	0	-	-	-	-	-
ANKRD30A	91074	genome.wustl.edu	37	10	37438747	37438747	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_052997.2	+1	validated	p.E483*	0.000	758	0%	944	44.6%	0	-	-	-	-	NULL
ANKRD30A	91074	genome.wustl.edu	37	10	37447484	37447484	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_052997.2	+1	validated	p.E568K	0.028	442	0%	578	40.5%	0	-	benign(0.224)	deleterious(0)	neutral(0.467)	NULL
ANKRD30A	91074	genome.wustl.edu	37	10	37466660	37466660	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000374660	+1	known	p.D774Y	0.000	364	0%	426	15.5%	0	-	possibly_damaging(0.882)	deleterious(0)	deleterious(0.789)	NULL
ZNF248	57209	genome.wustl.edu	37	10	38121764	38121764	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021045.1	-1	provisional	p.K173N	0.230	162	0%	225	41.3%	0	-	probably_damaging(0.976)	deleterious(0)	deleterious(0.863)	NULL
ZNF248	57209	genome.wustl.edu	37	10	38121921	38121921	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021045.1	-1	provisional	p.K121T	0.071	89	0%	145	35.2%	0	-	benign(0.318)	tolerated(0.09)	neutral(0.396)	NULL
ENSG00000228637	0	genome.wustl.edu	37	10	42396442	42396442	+	RNA	SNP	G	G	A	rs68058204	byCluster;byFrequency	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000439345	-1	novel	NULL	0.000	78	1.3%	74	5.4%	1	0%	-	-	-	-
CCNYL2	414194	genome.wustl.edu	37	10	42924581	42924581	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000426433	-1	known	p.L151	1.000	39	0%	64	90.6%	0	-	-	-	-	HMMSmart_CYCLIN,superfamily_Cyclin_like
ZNF33B	7582	genome.wustl.edu	37	10	43088103	43088103	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006955.1	-1	provisional	p.I765	0.815	322	0%	352	17.9%	2	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF33B	7582	genome.wustl.edu	37	10	43089311	43089311	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006955.1	-1	provisional	p.G363*	1.000	271	0.7%	346	17.1%	6	16.6%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
LOC728064	728064	genome.wustl.edu	37	10	43206650	43206650	+	RNA	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XR_015196.2	-1	model	NULL	0.992	117	0%	161	45.3%	0	-	-	-	-	-
CSGALNACT2	55454	genome.wustl.edu	37	10	43659443	43659443	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018590.3	+1	provisional	p.I370	0.997	524	0%	592	44.6%	4	100%	-	-	-	HMMPfam_CHGN,superfamily_Nucleotide-diphospho-sugar transferases
ZNF32	7580	genome.wustl.edu	37	10	44140135	44140135	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001005368.1	-1	validated	p.S62L	0.996	119	0%	165	43%	18	33.3%	probably_damaging(0.955)	tolerated(0.2)	neutral(0.448)	NULL
ALOX5	240	genome.wustl.edu	37	10	45935921	45935921	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000698.2	+1	reviewed	p.S342L	1.000	116	0%	131	43.5%	3	0%	benign(0.129)	deleterious(0)	neutral(0.456)	HMMPfam_Lipoxygenase,superfamily_Lipoxygenase
FAM21C	253725	genome.wustl.edu	37	10	46224452	46224452	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015262.2	+1	validated	p.S90Y	1.000	408	0.2%	516	40.9%	15	33.3%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
FAM21C	253725	genome.wustl.edu	37	10	46250493	46250493	+	Silent	SNP	C	C	A	rs28673841		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015262.2	+1	validated	p.L450	0.998	400	0%	484	44.2%	3	0%	-	-	-	NULL
FAM35B	414241	genome.wustl.edu	37	10	46927867	46927867	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000301038	+1	known	p.S129Y	0.930	216	0%	299	33.4%	2	0%	possibly_damaging(0.911)	deleterious(0.02)	deleterious(0.746)	NULL
PPYR1	5540	genome.wustl.edu	37	10	47087415	47087415	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005972.4	+1	validated	p.R211H	0.838	85	0%	111	14.4%	0	-	benign(0.058)	deleterious(0)	neutral(0.448)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
PPYR1	5540	genome.wustl.edu	37	10	47087496	47087496	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005972.4	+1	validated	p.Y238C	0.985	51	0%	92	12%	0	-	possibly_damaging(0.823)	deleterious(0.02)	deleterious(0.695)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ZNF488	118738	genome.wustl.edu	37	10	48371149	48371149	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_153034.2	+1	provisional	p.R206Q	0.000	134	0%	165	46.7%	1	100%	benign(0.126)	tolerated(0.6)	neutral(0.015)	NULL
FRMPD2	143162	genome.wustl.edu	37	10	49365380	49365380	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001018071.3	-1	reviewed	p.S1305	0.000	513	0%	588	26.7%	0	-	-	-	-	NULL
FRMPD2	143162	genome.wustl.edu	37	10	49393681	49393681	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001018071.3	-1	reviewed	p.K758N	0.090	242	0%	369	43.1%	0	-	benign(0.009)	tolerated(0.11)	neutral(0.272)	NULL
MAPK8	5599	genome.wustl.edu	37	10	49612989	49612989	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_139047.1	+1	reviewed	p.E73*	1.000	162	0%	194	41.8%	2	0%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_MAPK,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
WDFY4	57705	genome.wustl.edu	37	10	50177249	50177249	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020945.1	+1	validated	p.F2909V	1.000	118	0%	195	35.9%	5	80%	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	superfamily_WD40 repeat-like
ERCC6	2074	genome.wustl.edu	37	10	50667076	50667076	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000124.2	-1	reviewed	p.E1423*	1.000	121	0%	152	41.4%	3	33.3%	-	-	-	NULL
ERCC6	2074	genome.wustl.edu	37	10	50669518	50669518	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000124.2	-1	reviewed	p.R1288Q	0.998	73	0%	116	55.2%	7	57.1%	probably_damaging(1)	tolerated(0.05)	deleterious(0.845)	NULL
SLC18A3	6572	genome.wustl.edu	37	10	50819176	50819176	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003055.2	+1	reviewed	p.S130	1.000	34	0%	42	40.5%	0	-	-	-	-	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
ASAH2	56624	genome.wustl.edu	37	10	52002998	52002998	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_019893.2	-1	validated	p.I158	0.030	223	0%	214	45.3%	0	-	-	-	-	HMMPfam_Ceramidase_alk
A1CF	29974	genome.wustl.edu	37	10	52566549	52566549	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_138932.1	-1	reviewed	p.T575	0.207	212	0%	266	40.6%	0	-	-	-	-	NULL
PRKG1	5592	genome.wustl.edu	37	10	52751172	52751172	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001098512.1	+1	validated	p.L12I	1.000	47	0%	67	32.8%	0	-	benign(0.224)	tolerated(0.49)	neutral(0.033)	NULL
PRKG1	5592	genome.wustl.edu	37	10	53822346	53822346	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006258.2	+1	validated	p.R297K	1.000	161	0%	220	37.3%	0	-	benign(0.002)	tolerated(0.22)	neutral(0.042)	HMMPfam_cNMP_binding,HMMSmart_SM00100,superfamily_cAMP-binding domain-like
TFAM	7019	genome.wustl.edu	37	10	60148513	60148513	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000395377	+1	known	p.D107N	0.007	217	0%	254	18.5%	0	-	-	-	-	superfamily_HMG-box
TFAM	7019	genome.wustl.edu	37	10	60154759	60154759	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003201.1	+1	provisional	p.M222I	0.990	224	0%	301	42.2%	9	22.2%	possibly_damaging(0.902)	deleterious(0)	deleterious(0.801)	superfamily_HMG-box
BICC1	80114	genome.wustl.edu	37	10	60548181	60548181	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001080512.1	+1	reviewed	p.R200W	1.000	268	0%	336	42%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00322,superfamily_Eukaryotic type KH-domain (KH-domain type I)
FAM13C	220965	genome.wustl.edu	37	10	61012573	61012573	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_198215.3	-1	validated	p.T506A	1.000	235	0%	298	39.6%	4	25%	-	-	-	NULL
SLC16A9	220963	genome.wustl.edu	37	10	61413680	61413680	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_194298.2	-1	validated	p.W368*	1.000	158	0%	176	43.8%	5	40%	-	-	-	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
CCDC6	8030	genome.wustl.edu	37	10	61566784	61566784	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005436.3	-1	validated	p.E300D	1.000	301	0%	389	40.1%	36	41.6%	probably_damaging(0.999)	tolerated(0.1)	deleterious(0.777)	HMMPfam_DUF2046
ANK3	288	genome.wustl.edu	37	10	61833307	61833307	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020987.2	-1	reviewed	p.H2444	1.000	199	0%	233	49.8%	0	-	-	-	-	NULL
ANK3	288	genome.wustl.edu	37	10	61847919	61847919	+	Nonsense_Mutation	SNP	G	G	A	rs142673853		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020987.2	-1	reviewed	p.R1176*	1.000	106	0%	133	42.1%	3	0%	-	-	-	NULL
NRBF2	29982	genome.wustl.edu	37	10	64913621	64913621	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_030759.3	+1	validated	p.E169	1.000	275	0%	297	41.8%	3	33.3%	-	-	-	HMMPfam_DUF1875
NRBF2	29982	genome.wustl.edu	37	10	64913733	64913733	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_030759.3	+1	validated	p.L207I	0.998	149	0%	181	40.9%	9	33.3%	benign(0.335)	tolerated(0.11)	neutral(0.377)	HMMPfam_DUF1875
JMJD1C	221037	genome.wustl.edu	37	10	64975097	64975097	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032776.1	-1	validated	p.R314K	1.000	776	0%	930	42.5%	5	20%	probably_damaging(0.978)	deleterious(0)	deleterious(0.865)	NULL
HERC4	26091	genome.wustl.edu	37	10	69832788	69832788	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_022079.2	-1	validated	p.R26S	1.000	213	0%	286	48.3%	0	-	benign(0.416)	tolerated(0.25)	neutral(0.172)	superfamily_RCC1/BLIP-II
MYPN	84665	genome.wustl.edu	37	10	69881327	69881327	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032578.2	+1	validated	p.F44	0.032	48	2.1%	81	38.3%	0	-	-	-	-	NULL
MYPN	84665	genome.wustl.edu	37	10	69935101	69935101	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032578.2	+1	validated	p.K862N	1.000	254	0%	285	33.7%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
MYPN	84665	genome.wustl.edu	37	10	69957130	69957130	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032578.2	+1	validated	p.E1060D	1.000	136	0%	158	39.9%	0	-	benign(0)	tolerated(0.19)	neutral(0.050)	NULL
TET1	80312	genome.wustl.edu	37	10	70332237	70332237	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_030625.2	+1	validated	p.K48Q	0.998	117	0.9%	129	48.1%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
TET1	80312	genome.wustl.edu	37	10	70333128	70333128	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_030625.2	+1	validated	p.H345N	0.000	110	0%	123	42.3%	0	-	benign(0.029)	deleterious(0.04)	neutral(0.350)	NULL
TET1	80312	genome.wustl.edu	37	10	70404628	70404628	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_030625.2	+1	validated	p.K714N	1.000	182	0%	247	37.2%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
STOX1	219736	genome.wustl.edu	37	10	70644382	70644382	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001130161.2	+1	reviewed	p.S277Y	0.001	99	0%	150	46%	7	42.8%	benign(0.163)	deleterious(0.05)	neutral(0.360)	NULL
DDX50	79009	genome.wustl.edu	37	10	70706348	70706348	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024045.1	+1	reviewed	p.R726*	1.000	31	0%	71	40.8%	39	38.4%	-	-	-	NULL
HKDC1	80201	genome.wustl.edu	37	10	71005988	71005988	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_025130.3	+1	validated	p.E343D	1.000	68	0%	89	14.6%	20	10%	benign(0.089)	deleterious(0.01)	neutral(0.412)	HMMPfam_Hexokinase_2,superfamily_Actin-like ATPase domain
ADAMTS14	140766	genome.wustl.edu	37	10	72494964	72494964	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_139155.2	+1	reviewed	p.A467	0.936	66	0%	71	39.4%	2	0%	-	-	-	NULL
CDH23	64072	genome.wustl.edu	37	10	73462391	73462391	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_022124.5	+1	reviewed	p.Q891H	1.000	121	0%	151	41.7%	1	0%	possibly_damaging(0.904)	tolerated(0.57)	neutral(0.364)	superfamily_Cadherin-like
CHST3	9469	genome.wustl.edu	37	10	73767039	73767039	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004273.4	+1	reviewed	p.D84N	0.741	64	0%	131	44.3%	19	26.3%	probably_damaging(0.989)	tolerated(0.3)	neutral(0.468)	NULL
CHST3	9469	genome.wustl.edu	37	10	73768179	73768179	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004273.4	+1	reviewed	p.N464D	1.000	4	0.000	12	0.583	20	30%	benign(0.382)	tolerated(0.26)	neutral(0.156)	NULL
ASCC1	51008	genome.wustl.edu	37	10	73963229	73963229	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015947.2	-1	validated	p.K89R	0.999	544	0.2%	531	25.8%	8	25%	benign(0.082)	tolerated(0.17)	neutral(0.065)	HMMSmart_KH,HMMPfam_KH_1,superfamily_SSF54791
P4HA1	5033	genome.wustl.edu	37	10	74790090	74790090	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000917.3	-1	reviewed	p.R396L	1.000	279	0%	341	45.2%	18	55.5%	possibly_damaging(0.922)	deleterious(0.01)	deleterious(0.777)	HMMSmart_SM00702
P4HA1	5033	genome.wustl.edu	37	10	74804803	74804803	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001017962.2	-1	reviewed	p.R362*	1.000	179	0%	187	39%	6	0%	-	-	-	HMMSmart_SM00702
PPP3CB	5532	genome.wustl.edu	37	10	75227316	75227316	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001142353.1	-1	validated	p.E368G	1.000	101	0%	123	43.9%	10	50%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_SSF56300
AGAP5	729092	genome.wustl.edu	37	10	75436521	75436521	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001144000.1	-1	validated	p.D181N	0.999	84	0%	89	58.4%	8	25%	benign(0.253)	deleterious(0.04)	neutral(0.375)	NULL
FUT11	170384	genome.wustl.edu	37	10	75535215	75535215	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000394790	+1	known	p.R458I	0.013	60	0%	75	29.3%	0	-	unknown(0)	-	-	NULL
VCL	7414	genome.wustl.edu	37	10	75855510	75855510	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014000.2	+1	reviewed	p.R547Q	0.992	53	0%	58	41.4%	110	31.8%	benign(0.001)	tolerated(0.44)	neutral(0.013)	HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin
ADK	132	genome.wustl.edu	37	10	76153970	76153970	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006721.2	+1	reviewed	p.I115	1.000	169	0.6%	241	43.6%	27	66.6%	-	-	-	HMMPfam_PfkB,superfamily_Ribokinase-like
KCNMA1	3778	genome.wustl.edu	37	10	78839273	78839273	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000372403	-1	known	p.E471*	1.000	170	0%	190	40.5%	7	28.5%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	superfamily_NAD(P)-binding Rossmann-fold domains
POLR3A	11128	genome.wustl.edu	37	10	79753109	79753109	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007055.3	-1	validated	p.S878Y	1.000	109	0%	165	40%	9	44.4%	possibly_damaging(0.929)	deleterious(0)	deleterious(0.821)	HMMPfam_RNA_pol_Rpb1_5,superfamily_SSF64484
ZMIZ1	57178	genome.wustl.edu	37	10	81061875	81061875	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020338.3	+1	validated	p.F677	0.993	28	0%	29	31%	147	36.7%	-	-	-	NULL
EIF5AL1	143244	genome.wustl.edu	37	10	81272652	81272652	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001099692.1	+1	validated	p.N83D	1.000	245	0%	343	35%	730	0.2%	benign(0.204)	tolerated(0.21)	neutral(0.064)	superfamily_Transl_SH3_like,HMMPfam_eIF-5a
FAM213A	84293	genome.wustl.edu	37	10	82187112	82187112	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032333.4	+1	validated	p.R146W	0.996	196	0%	280	41.8%	38	42.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SH2D4B	387694	genome.wustl.edu	37	10	82331288	82331288	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_207372.2	+1	validated	p.R150H	1.000	76	0%	84	36.9%	0	-	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	NULL
NRG3	10718	genome.wustl.edu	37	10	84118524	84118524	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001010848.3	+1	reviewed	p.E285K	1.000	112	0%	134	47.8%	0	-	probably_damaging(0.995)	deleterious(0.04)	deleterious(0.806)	superfamily_SSF57196
NRG3	10718	genome.wustl.edu	37	10	84118593	84118593	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001010848.3	+1	reviewed	p.E308K	1.000	98	0%	135	34.8%	0	-	probably_damaging(0.995)	tolerated(0.31)	deleterious(0.485)	HMMPfam_EGF,HMMSmart_EGF,superfamily_SSF57196
CDHR1	92211	genome.wustl.edu	37	10	85968537	85968537	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033100.2	+1	reviewed	p.R407Q	1.000	193	0%	226	41.2%	0	-	probably_damaging(1)	tolerated(0.19)	deleterious(0.549)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
RGR	5995	genome.wustl.edu	37	10	86014145	86014145	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002921.3	+1	reviewed	p.T196	0.000	198	0%	251	42.2%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
GRID1	2894	genome.wustl.edu	37	10	87362401	87362401	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017551.2	-1	reviewed	p.D887Y	1.000	80	0%	104	37.5%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LDB3	11155	genome.wustl.edu	37	10	88459070	88459070	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001080115.1	+1	reviewed	p.F311S	1.000	99	0%	129	51.2%	0	-	unknown(0)	deleterious(0)	-	NULL
PAPSS2	9060	genome.wustl.edu	37	10	89503202	89503202	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001015880.1	+1	reviewed	p.R432H	0.998	94	1.1%	123	51.2%	5	0%	probably_damaging(0.98)	tolerated(0.06)	deleterious(0.746)	HMMPfam_ATP-sulfurylase,superfamily_SSF52374
PTEN	5728	genome.wustl.edu	37	10	89653791	89653791	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000371953	+1	known	p.P30Q	1.000	370	0.3%	433	43.4%	31	22.5%	benign(0.429)	tolerated(0.22)	neutral(0.182)	HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
PTEN	5728	genome.wustl.edu	37	10	89720857	89720857	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000371953	+1	known	p.Y336*	0.996	82	0%	104	45.2%	10	20%	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2
LIPJ	142910	genome.wustl.edu	37	10	90365427	90365427	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001010939.2	+1	validated	p.G278V	0.911	307	0%	407	41.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Abhydrolase_1,superfamily_alpha/beta-Hydrolases
LIPJ	142910	genome.wustl.edu	37	10	90366637	90366637	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001010939.2	+1	validated	p.I358	0.864	137	0%	167	37.7%	0	-	-	-	-	superfamily_alpha/beta-Hydrolases
LIPF	8513	genome.wustl.edu	37	10	90428502	90428502	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004190.2	+1	reviewed	p.F137	1.000	195	0%	233	47.6%	0	-	-	-	-	HMMPfam_Abhydrolase_1,superfamily_alpha/beta-Hydrolases
KIF20B	9585	genome.wustl.edu	37	10	91488915	91488915	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016195.2	+1	validated	p.E728*	0.996	83	0%	94	41.5%	0	-	-	-	-	NULL
KIF20B	9585	genome.wustl.edu	37	10	91498065	91498065	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016195.2	+1	validated	p.V1116A	0.001	73	0%	94	53.2%	1	0%	benign(0.099)	tolerated(0.2)	neutral(0.057)	NULL
HECTD2	143279	genome.wustl.edu	37	10	93244317	93244317	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_182765.3	+1	validated	p.S292Y	1.000	273	0.4%	306	45.4%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
HECTD2	143279	genome.wustl.edu	37	10	93258692	93258692	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_182765.3	+1	validated	p.S607A	1.000	167	0%	186	48.9%	0	-	benign(0.001)	tolerated(0.07)	neutral(0.319)	HMMPfam_HECT,HMMSmart_HECTc,superfamily_HECT
PPP1R3C	5507	genome.wustl.edu	37	10	93390585	93390585	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005398.4	-1	provisional	p.S18L	0.999	102	0%	85	44.7%	0	-	possibly_damaging(0.61)	tolerated(0.2)	neutral(0.261)	NULL
BTAF1	9044	genome.wustl.edu	37	10	93749118	93749118	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003972.2	+1	validated	p.K879Q	1.000	61	0%	101	52.5%	6	50%	possibly_damaging(0.501)	deleterious(0.02)	deleterious(0.550)	superfamily_ARM repeat
BTAF1	9044	genome.wustl.edu	37	10	93786997	93786997	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003972.2	+1	validated	p.E1782D	0.997	348	0%	407	43%	7	28.5%	benign(0)	tolerated(0.64)	neutral(0.003)	NULL
MARCH5	54708	genome.wustl.edu	37	10	94109593	94109593	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017824.4	+1	validated	p.L240S	1.000	144	0%	257	26.1%	45	28.8%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
EXOC6	54536	genome.wustl.edu	37	10	94818012	94818012	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_019053.4	+1	reviewed	p.F772C	1.000	135	0%	187	40.6%	11	63.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sec15
PDE6C	5146	genome.wustl.edu	37	10	95372929	95372929	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006204.3	+1	reviewed	p.T149	0.975	14	0%	16	62.5%	0	-	-	-	-	HMMPfam_GAF,HMMSmart_GAF,superfamily_SSF55781
PLCE1	51196	genome.wustl.edu	37	10	96030348	96030348	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016341.3	+1	reviewed	p.E1499*	1.000	160	0%	190	43.2%	6	0%	-	-	-	HMMPfam_PI-PLC-X,HMMSmart_SM00148,superfamily_PLC-like phosphodiesterases
NOC3L	64318	genome.wustl.edu	37	10	96112684	96112684	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_022451.9	-1	provisional	p.R276Q	0.997	354	0%	401	15.7%	1	0%	probably_damaging(1)	tolerated(0.32)	deleterious(0.524)	HMMPfam_NOC3p
TBC1D12	23232	genome.wustl.edu	37	10	96269884	96269884	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015188.1	+1	validated	p.L546S	1.000	340	0%	430	45.8%	8	25%	benign(0.354)	deleterious(0.03)	deleterious(0.476)	HMMPfam_TBC,HMMSmart_TBC,superfamily_RabGAP_TBC
HELLS	3070	genome.wustl.edu	37	10	96354548	96354548	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018063.3	+1	reviewed	p.D729N	1.000	302	0%	354	41.2%	2	0%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	superfamily_P-loop containing nucleoside triphosphate hydrolases
CYP2C18	1562	genome.wustl.edu	37	10	96454723	96454723	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000772.2	+1	reviewed	p.V177	0.990	488	0%	451	39.5%	0	-	-	-	-	HMMPfam_p450,superfamily_Cytochrome P450
CYP2C18	1562	genome.wustl.edu	37	10	96493055	96493055	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000772.2	+1	reviewed	p.G384D	0.986	454	0%	566	41.5%	1	100%	possibly_damaging(0.754)	tolerated(0.13)	deleterious(0.530)	HMMPfam_p450,superfamily_Cytochrome P450
ENTPD1	953	genome.wustl.edu	37	10	97620254	97620254	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001776.5	+1	validated	p.K368T	0.820	274	0%	381	13.1%	1	0%	benign(0.004)	tolerated(0.13)	neutral(0.253)	HMMPfam_GDA1_CD39
TLL2	7093	genome.wustl.edu	37	10	98180728	98180728	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012465.3	-1	validated	p.R303Q	1.000	250	0%	368	41%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Astacin,superfamily_SSF55486
C10orf12	26148	genome.wustl.edu	37	10	98742367	98742367	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015652.2	+1	predicted	p.P407H	0.510	66	0%	61	26.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
C10orf12	26148	genome.wustl.edu	37	10	98742611	98742611	+	Missense_Mutation	SNP	G	G	T	rs63063661		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015652.2	+1	predicted	p.E488D	1.000	32	0%	42	50%	0	-	possibly_damaging(0.738)	deleterious(0)	deleterious(0.715)	NULL
ARHGAP19	84986	genome.wustl.edu	37	10	99023341	99023341	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032900.4	-1	validated	p.R150Q	1.000	184	0%	212	49.5%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
CRTAC1	55118	genome.wustl.edu	37	10	99640121	99640121	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000298819	-1	known	p.S554L	0.358	64	0%	84	41.7%	0	-	benign(0.104)	-	-	NULL
C10orf28	27291	genome.wustl.edu	37	10	99968068	99968068	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014472.4	+1	validated	p.P66L	0.000	115	0%	144	37.5%	0	-	benign(0.005)	tolerated(0.08)	neutral(0.300)	NULL
C10orf28	27291	genome.wustl.edu	37	10	99968492	99968492	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014472.4	+1	validated	p.I207M	0.048	120	0%	170	19.4%	3	0%	benign(0)	tolerated(0.16)	neutral(0.059)	NULL
PYROXD2	84795	genome.wustl.edu	37	10	100155028	100155028	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032709.2	-1	validated	p.S237Y	1.000	56	0%	78	44.9%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF51905
ABCC2	1244	genome.wustl.edu	37	10	101577134	101577134	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000392.3	+1	reviewed	p.G722R	1.000	111	0%	154	32.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
DNMBP	23268	genome.wustl.edu	37	10	101656046	101656046	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015221.2	-1	validated	p.H1010R	1.000	249	0%	336	44.9%	8	25%	probably_damaging(0.955)	tolerated(0.84)	neutral(0.399)	HMMPfam_BAR,HMMSmart_SM00721
DNMBP	23268	genome.wustl.edu	37	10	101657828	101657828	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000342239	-1	known	p.I979L	0.000	180	0.6%	195	37.9%	0	-	benign(0)	tolerated(0.44)	neutral(0.013)	NULL
CPN1	1369	genome.wustl.edu	37	10	101816793	101816793	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001308.2	-1	reviewed	p.A330S	1.000	86	0%	92	16.3%	0	-	benign(0.055)	tolerated(0.83)	neutral(0.004)	HMMPfam_Peptidase_M14,HMMSmart_SM00631,superfamily_Zn-dependent exopeptidases
PKD2L1	9033	genome.wustl.edu	37	10	102056850	102056850	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016112.2	-1	reviewed	p.I358V	0.000	159	0%	204	51%	0	-	benign(0)	tolerated(0.49)	neutral(0.011)	HMMPfam_PKD_channel,superfamily_Voltage-gated potassium channels
SCD	6319	genome.wustl.edu	37	10	102112203	102112203	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005063.4	+1	validated	p.R131W	0.666	136	0%	185	46.5%	22	45.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_FA_desaturase
HIF1AN	55662	genome.wustl.edu	37	10	102296290	102296290	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017902.2	+1	validated	p.F100L	1.000	195	0%	205	47.3%	7	57.1%	probably_damaging(0.995)	tolerated(0.06)	deleterious(0.780)	superfamily_SSF51197
HIF1AN	55662	genome.wustl.edu	37	10	102296416	102296416	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017902.2	+1	validated	p.E142	0.988	90	0%	96	50%	18	55.5%	-	-	-	superfamily_SSF51197
C10orf2	56652	genome.wustl.edu	37	10	102750629	102750629	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021830.4	+1	reviewed	p.I532	0.900	117	0%	179	40.8%	23	52.1%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
LOC100289509	100289509	genome.wustl.edu	37	10	103588804	103588804	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_002343030.1	+1	model	p.S17	0.000	45	0%	51	49%	1	0%	-	-	-	NULL
C10orf76	79591	genome.wustl.edu	37	10	103792895	103792895	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024541.2	-1	validated	p.S65Y	1.000	213	0%	275	41.5%	14	50%	possibly_damaging(0.92)	tolerated(0.1)	deleterious(0.657)	NULL
PPRC1	23082	genome.wustl.edu	37	10	103901624	103901624	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015062.3	+1	reviewed	p.A1120V	0.652	56	0%	65	35.4%	34	23.5%	possibly_damaging(0.949)	tolerated(0.09)	deleterious(0.690)	NULL
NOLC1	9221	genome.wustl.edu	37	10	103920558	103920558	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004741.3	+1	validated	p.E483D	0.013	56	0%	77	40.3%	53	50.9%	unknown(0)	tolerated(0.47)	-	NULL
NOLC1	9221	genome.wustl.edu	37	10	103921323	103921323	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004741.3	+1	validated	p.K584N	1.000	80	0%	86	34.9%	24	45.8%	probably_damaging(0.99)	deleterious(0.03)	deleterious(0.806)	NULL
NOLC1	9221	genome.wustl.edu	37	10	103922004	103922004	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004741.3	+1	validated	p.S693Y	1.000	90	0%	102	49%	62	48.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SRP40_C
PSD	5662	genome.wustl.edu	37	10	104163634	104163634	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002779.3	-1	provisional	p.E937*	1.000	44	0%	54	16.7%	5	0%	-	-	-	NULL
NT5C2	22978	genome.wustl.edu	37	10	104851364	104851364	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001134373.1	-1	validated	p.E390K	1.000	138	0%	149	43%	13	53.8%	possibly_damaging(0.701)	tolerated(0.58)	neutral(0.257)	HMMPfam_5_nucleotid
NT5C2	22978	genome.wustl.edu	37	10	104852930	104852930	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001134373.1	-1	validated	p.L375	1.000	200	0%	189	45.5%	10	30%	-	-	-	HMMPfam_5_nucleotid
TAF5	6877	genome.wustl.edu	37	10	105138096	105138096	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006951.3	+1	reviewed	p.R301Q	1.000	167	0%	209	42.6%	4	25%	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	HMMPfam_TFIID_90kDa
SLK	9748	genome.wustl.edu	37	10	105727554	105727554	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014720.2	+1	provisional	p.K17N	1.000	222	0%	265	48.3%	6	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GSTO1	9446	genome.wustl.edu	37	10	106019360	106019360	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004832.1	+1	reviewed	p.K57T	1.000	215	0%	260	42.7%	63	39.6%	possibly_damaging(0.949)	deleterious(0.01)	deleterious(0.798)	HMMPfam_GST_N,superfamily_Thiordxn-like_fd
CCDC147	159686	genome.wustl.edu	37	10	106159145	106159145	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001008723.1	+1	validated	p.A568T	1.000	174	0%	165	32.1%	0	-	benign(0.126)	tolerated(0.19)	neutral(0.060)	NULL
XPNPEP1	7511	genome.wustl.edu	37	10	111643891	111643891	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020383.3	-1	reviewed	p.R212Q	1.000	310	0%	377	43.2%	59	55.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ADD3	120	genome.wustl.edu	37	10	111881895	111881895	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016824.3	+1	reviewed	p.V330I	0.982	268	0%	345	44.3%	22	36.3%	benign(0.006)	tolerated(0.35)	neutral(0.021)	superfamily_AraD-like aldolase/epimerase
SMC3	9126	genome.wustl.edu	37	10	112337596	112337596	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005445.3	+1	reviewed	p.D92N	1.000	256	0%	291	40.9%	5	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SMC_N,superfamily_P-loop containing nucleoside triphosphate hydrolases
ADRA2A	150	genome.wustl.edu	37	10	112839029	112839029	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000681.3	+1	reviewed	p.F425L	1.000	80	0%	133	46.6%	35	22.8%	benign(0.38)	tolerated(0.18)	neutral(0.177)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
HABP2	3026	genome.wustl.edu	37	10	115338435	115338435	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004132.3	+1	reviewed	p.M206I	1.000	177	0%	245	47.3%	0	-	benign(0)	deleterious(0.05)	neutral(0.345)	HMMPfam_Kringle,HMMSmart_SM00130,superfamily_Kringle-like
NRAP	4892	genome.wustl.edu	37	10	115383396	115383396	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_198060.2	-1	validated	e23-1	1.000	242	0%	295	44.1%	0	-	-	-	-	-
NRAP	4892	genome.wustl.edu	37	10	115413821	115413821	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_198060.2	-1	validated	p.E142K	0.992	230	0%	272	40.1%	0	-	benign(0.011)	tolerated(0.12)	neutral(0.261)	NULL
C10orf81	79949	genome.wustl.edu	37	10	115540378	115540378	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000369312	+1	known	p.I313	0.039	155	0%	201	44.8%	0	-	-	-	-	NULL
DCLRE1A	9937	genome.wustl.edu	37	10	115609399	115609399	+	Missense_Mutation	SNP	A	A	C	rs184992773	by1000genomes	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014881.3	-1	provisional	p.L489V	0.000	128	0%	182	48.9%	0	-	benign(0.001)	tolerated(0.09)	neutral(0.296)	NULL
TDRD1	56165	genome.wustl.edu	37	10	115977311	115977311	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_198795.1	+1	reviewed	p.K740N	0.000	133	0%	149	32.9%	0	-	benign(0.082)	tolerated(0.22)	neutral(0.048)	HMMPfam_TUDOR
AFAP1L2	84632	genome.wustl.edu	37	10	116059089	116059089	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001001936.1	-1	validated	p.E681	0.996	441	0%	524	39.1%	14	0%	-	-	-	NULL
FAM160B1	57700	genome.wustl.edu	37	10	116593028	116593028	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020940.3	+1	validated	p.S54L	1.000	164	0%	189	44.4%	4	100%	possibly_damaging(0.837)	tolerated(0.65)	neutral(0.323)	NULL
TRUB1	142940	genome.wustl.edu	37	10	116731929	116731929	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_139169.4	+1	validated	p.S211L	1.000	223	0%	315	42.9%	3	33.3%	probably_damaging(0.985)	deleterious(0.01)	deleterious(0.838)	HMMPfam_TruB_N,superfamily_PsdUridine_synth_cat_dom
ATRNL1	26033	genome.wustl.edu	37	10	117059710	117059710	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_207303.2	+1	validated	p.N861T	1.000	125	0%	158	43%	9	33.3%	benign(0.114)	tolerated(0.45)	neutral(0.021)	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like
GFRA1	2674	genome.wustl.edu	37	10	117824052	117824052	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005264.4	-1	reviewed	p.N419H	0.179	149	0%	209	31.6%	0	-	benign(0.001)	tolerated(0.2)	neutral(0.049)	NULL
PNLIPRP3	119548	genome.wustl.edu	37	10	118215241	118215241	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001011709.2	+1	validated	p.F155C	0.000	106	0%	104	40.4%	0	-	probably_damaging(0.997)	deleterious(0.02)	deleterious(0.849)	HMMPfam_Lipase,superfamily_alpha/beta-Hydrolases
PNLIP	5406	genome.wustl.edu	37	10	118319998	118319998	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000936.2	+1	reviewed	p.F377	0.988	218	0%	288	42.4%	0	-	-	-	-	HMMPfam_PLAT,HMMSmart_SM00308,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain)
KIAA1598	57698	genome.wustl.edu	37	10	118719730	118719730	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001127211.1	-1	validated	p.V62I	1.000	137	0%	178	47.2%	5	60%	probably_damaging(0.987)	tolerated(0.1)	deleterious(0.723)	NULL
EIF3A	8661	genome.wustl.edu	37	10	120795600	120795600	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003750.2	-1	validated	p.R1367H	1.000	308	0%	385	43.9%	73	41%	unknown(0)	deleterious(0)	-	NULL
EIF3A	8661	genome.wustl.edu	37	10	120801538	120801538	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003750.2	-1	validated	p.R1165I	0.978	99	0%	129	45%	125	33.6%	unknown(0)	deleterious(0.02)	-	NULL
EIF3A	8661	genome.wustl.edu	37	10	120802165	120802165	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003750.2	-1	validated	p.R956Q	0.973	70	0%	84	44%	175	50.8%	probably_damaging(0.997)	tolerated(0.08)	deleterious(0.766)	NULL
EIF3A	8661	genome.wustl.edu	37	10	120810137	120810137	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003750.2	-1	validated	p.R790Q	1.000	687	0%	861	46.1%	62	45.1%	unknown(0)	deleterious(0.01)	-	NULL
EIF3A	8661	genome.wustl.edu	37	10	120817760	120817760	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003750.2	-1	validated	p.R562Q	0.988	155	0%	174	47.7%	27	33.3%	unknown(0)	tolerated(0.47)	-	NULL
TIAL1	7073	genome.wustl.edu	37	10	121341434	121341434	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001033925.1	-1	reviewed	p.S141L	1.000	174	0%	204	34.8%	9	55.5%	benign(0.207)	deleterious(0)	neutral(0.465)	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928
TIAL1	7073	genome.wustl.edu	37	10	121341987	121341987	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001033925.1	-1	reviewed	p.R88I	1.000	203	0%	195	45.6%	29	27.5%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928
BAG3	9531	genome.wustl.edu	37	10	121432041	121432041	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004281.3	+1	reviewed	p.R261Q	0.002	22	0%	27	40.7%	41	53.6%	benign(0.033)	tolerated(0.38)	neutral(0.019)	NULL
ATE1	11101	genome.wustl.edu	37	10	123600643	123600643	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001001976.1	-1	reviewed	p.D371N	1.000	84	0%	136	52.9%	13	38.4%	probably_damaging(0.958)	deleterious(0.01)	deleterious(0.807)	HMMPfam_ATE_C
BTBD16	118663	genome.wustl.edu	37	10	124094413	124094413	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_144587.2	+1	validated	p.S394	0.000	238	0%	299	38.1%	0	-	-	-	-	NULL
C10orf120	399814	genome.wustl.edu	37	10	124457713	124457713	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001010912.1	-1	predicted	p.P182S	0.000	179	0%	252	11.9%	0	-	benign(0)	tolerated(0.78)	neutral(0.001)	NULL
FAM24A	118670	genome.wustl.edu	37	10	124671219	124671219	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001029888.1	+1	inferred	p.A23	0.000	326	0%	458	42.6%	0	-	-	-	-	NULL
FAM175B	23172	genome.wustl.edu	37	10	126523262	126523262	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032182.3	+1	validated	p.R324C	0.492	152	0%	246	49.6%	15	33.3%	possibly_damaging(0.736)	deleterious(0.03)	deleterious(0.633)	NULL
C10orf137	26098	genome.wustl.edu	37	10	127417935	127417935	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015608.2	+1	validated	p.K267N	1.000	265	0%	313	39.3%	2	100%	benign(0.013)	tolerated(0.22)	neutral(0.043)	NULL
C10orf90	118611	genome.wustl.edu	37	10	128193111	128193111	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001004298.2	-1	validated	p.R220C	0.000	125	0%	151	36.4%	0	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	NULL
DOCK1	1793	genome.wustl.edu	37	10	128923772	128923772	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000398025	+1	known	p.D865	0.661	47	0%	76	32.9%	54	38.8%	-	-	-	NULL
CLRN3	119467	genome.wustl.edu	37	10	129682097	129682097	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152311.3	-1	validated	p.S91L	0.000	167	0%	200	37%	1	100%	benign(0)	tolerated(0.53)	neutral(0.007)	NULL
PTPRE	5791	genome.wustl.edu	37	10	129866455	129866455	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006504.4	+1	reviewed	p.F304	0.875	23	0%	42	45.2%	4	25%	-	-	-	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
PTPRE	5791	genome.wustl.edu	37	10	129877870	129877870	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006504.4	+1	reviewed	p.L647V	0.998	200	0%	281	43.8%	2	50%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
MKI67	4288	genome.wustl.edu	37	10	129899690	129899690	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002417.4	-1	reviewed	p.A3179	0.000	274	0%	366	49.7%	32	43.7%	-	-	-	NULL
MKI67	4288	genome.wustl.edu	37	10	129900918	129900918	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002417.4	-1	reviewed	p.A3062	0.000	380	0%	498	12.4%	29	13.7%	-	-	-	NULL
MKI67	4288	genome.wustl.edu	37	10	129901607	129901607	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002417.4	-1	reviewed	p.D2833Y	0.000	454	0%	630	11.7%	43	11.6%	probably_damaging(0.993)	tolerated(0.07)	deleterious(0.769)	HMMPfam_K167R
MKI67	4288	genome.wustl.edu	37	10	129902288	129902288	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002417.4	-1	reviewed	p.T2606A	0.000	252	0%	280	41.1%	15	46.6%	benign(0.235)	tolerated(0.22)	neutral(0.066)	HMMPfam_K167R
MKI67	4288	genome.wustl.edu	37	10	129902414	129902414	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002417.4	-1	reviewed	p.E2564K	0.000	166	0%	181	40.3%	16	56.2%	probably_damaging(0.999)	tolerated(0.15)	deleterious(0.732)	HMMPfam_K167R
MKI67	4288	genome.wustl.edu	37	10	129904559	129904559	+	Missense_Mutation	SNP	T	T	G	rs2782872	byCluster	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002417.4	-1	reviewed	p.T1849P	0.001	661	0%	827	42.7%	3	33.3%	probably_damaging(0.978)	deleterious(0.04)	deleterious(0.769)	NULL
MKI67	4288	genome.wustl.edu	37	10	129905201	129905201	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002417.4	-1	reviewed	p.T1635A	0.024	451	0%	626	44.1%	10	50%	possibly_damaging(0.631)	tolerated(0.05)	deleterious(0.566)	HMMPfam_K167R
MKI67	4288	genome.wustl.edu	37	10	129907281	129907281	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002417.4	-1	reviewed	p.N941	0.001	243	0%	270	31.5%	2	50%	-	-	-	NULL
MKI67	4288	genome.wustl.edu	37	10	129913277	129913277	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002417.4	-1	reviewed	p.E465	0.003	117	0%	165	43.6%	2	50%	-	-	-	NULL
GLRX3	10539	genome.wustl.edu	37	10	131977648	131977648	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006541.3	+1	provisional	p.E334*	1.000	233	0%	258	43.8%	14	14.2%	-	-	-	superfamily_Thiordxn-like_fd
PPP2R2D	55844	genome.wustl.edu	37	10	133748048	133748048	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000455566	+1	known	p.R32C	1.000	308	0%	372	41.9%	3	0%	possibly_damaging(0.855)	deleterious(0)	deleterious(0.774)	superfamily_WD40 repeat-like
LRRC27	80313	genome.wustl.edu	37	10	134166416	134166416	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001143758.1	+1	validated	p.F368L	0.000	280	0%	380	41.1%	0	-	unknown(0)	-	-	NULL
C10orf91	170393	genome.wustl.edu	37	10	134261360	134261360	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_173541.2	+1	validated	p.A78V	0.000	73	0%	88	54.5%	0	-	benign(0)	-	-	NULL
INPP5A	3632	genome.wustl.edu	37	10	134595573	134595573	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000445580	+1	known	p.R92C	0.000	12	0%	37	40.5%	37	45.9%	probably_damaging(0.966)	deleterious(0)	deleterious(0.853)	NULL
NKX6-2	84504	genome.wustl.edu	37	10	134598595	134598595	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_177400.2	-1	validated	p.S220L	1.000	76	0%	92	52.2%	0	-	possibly_damaging(0.616)	tolerated(0.05)	deleterious(0.560)	NULL
KNDC1	85442	genome.wustl.edu	37	10	134981792	134981792	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152643.6	+1	validated	p.F112	0.987	84	0%	134	46.3%	4	25%	-	-	-	HMMSmart_SM00750
KNDC1	85442	genome.wustl.edu	37	10	134997383	134997383	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152643.6	+1	validated	p.I172S	0.711	96	0%	107	45.8%	0	-	benign(0.106)	deleterious(0)	neutral(0.453)	HMMSmart_SM00750
FRG2B	441581	genome.wustl.edu	37	10	135438841	135438841	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001080998.1	-1	provisional	p.S200Y	0.510	266	0%	327	24.5%	5	0%	possibly_damaging(0.85)	deleterious(0)	deleterious(0.772)	NULL
FRG2B	441581	genome.wustl.edu	37	10	135438966	135438966	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001080998.1	-1	provisional	p.R158	0.103	367	0%	529	30.4%	0	-	-	-	-	NULL
ATHL1	80162	genome.wustl.edu	37	11	292569	292569	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_025092.4	+1	validated	p.S350	0.963	42	0%	44	11.4%	73	12.3%	-	-	-	HMMPfam_Glyco_hydro_65m,superfamily_Six-hairpin glycosidases
LRRC56	115399	genome.wustl.edu	37	11	552187	552187	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_198075.3	+1	validated	p.F379S	0.004	54	0%	66	42.4%	6	33.3%	benign(0.001)	tolerated(0.1)	neutral(0.286)	NULL
PHRF1	57661	genome.wustl.edu	37	11	587453	587453	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020901.2	+1	validated	p.E137K	1.000	160	0%	216	50%	25	32%	benign(0.043)	deleterious(0.01)	neutral(0.408)	HMMSmart_RING,HMMPfam_zf-C3HC4,superfamily_SSF57850
TSPAN4	7106	genome.wustl.edu	37	11	862605	862605	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001025234.1	+1	reviewed	p.S40N	0.958	50	0%	67	43.3%	160	26.8%	benign(0)	tolerated(1)	-	HMMPfam_Tetraspannin
AP2A2	161	genome.wustl.edu	37	11	1000445	1000445	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012305.2	+1	validated	p.P657L	1.000	20	0%	28	39.3%	49	40.8%	probably_damaging(0.991)	tolerated(0.05)	deleterious(0.789)	NULL
MUC6	4588	genome.wustl.edu	37	11	1027415	1027415	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005961.2	-1	validated	p.A695V	0.001	33	0%	58	41.4%	25	24%	unknown(0)	tolerated(0.56)	-	superfamily_Serine proterase inhibitors
MUC2	4583	genome.wustl.edu	37	11	1083157	1083157	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002457.2	+1	reviewed	p.S686I	0.010	16	0%	41	46.3%	0	-	benign(0.043)	-	-	superfamily_Serine proterase inhibitors
MUC2	4583	genome.wustl.edu	37	11	1093934	1093934	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002457.2	+1	reviewed	e31+1	0.016	103	0%	155	41.9%	0	-	-	-	-	-
MUC2	4583	genome.wustl.edu	37	11	1094844	1094844	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002457.2	+1	reviewed	p.D1974N	0.703	154	0%	217	44.7%	1	100%	possibly_damaging(0.658)	tolerated(0.25)	neutral(0.270)	NULL
MUC2	4583	genome.wustl.edu	37	11	1096350	1096350	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002457.2	+1	reviewed	p.P2121	0.035	25	4%	19	57.9%	2	50%	-	-	-	HMMPfam_VWD,HMMSmart_SM00216
MUC5B	727897	genome.wustl.edu	37	11	1253681	1253681	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002458.1	+1	validated	p.E618D	0.974	35	0%	53	58.5%	13	7.6%	possibly_damaging(0.858)	-	-	HMMPfam_C8
MUC5B	727897	genome.wustl.edu	37	11	1263858	1263858	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002458.1	+1	validated	p.T1919	0.001	221	0%	323	46.1%	37	24.3%	-	-	-	NULL
MUC5B	727897	genome.wustl.edu	37	11	1265550	1265550	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002458.1	+1	validated	p.S2483	0.000	246	0%	310	20.3%	85	18.8%	-	-	-	NULL
MUC5B	727897	genome.wustl.edu	37	11	1272387	1272387	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002458.1	+1	validated	p.W4762*	0.000	410	0%	594	16.5%	159	6.9%	-	-	-	NULL
MUC5B	727897	genome.wustl.edu	37	11	1272615	1272615	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002458.1	+1	validated	p.T4838	0.063	226	0%	253	38.7%	76	76.3%	-	-	-	NULL
ENSG00000250644	0	genome.wustl.edu	37	11	1768918	1768918	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000427721	-1	known	p.S372L	0.983	62	0%	122	15.6%	35	2.8%	-	-	-	HMMPfam_CD225
TNNT3	7140	genome.wustl.edu	37	11	1953741	1953741	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006757.3	+1	reviewed	p.F56	0.999	148	0%	181	45.3%	0	-	-	-	-	NULL
TNNT3	7140	genome.wustl.edu	37	11	1955163	1955163	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006757.3	+1	reviewed	p.E97D	1.000	37	0%	44	18.2%	0	-	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMPfam_Troponin
TSPAN32	10077	genome.wustl.edu	37	11	2334911	2334911	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_139022.2	+1	reviewed	p.D128N	0.994	30	0%	46	45.7%	2	50%	possibly_damaging(0.638)	tolerated(0.34)	neutral(0.246)	superfamily_Tetraspanin,HMMPfam_Tetraspannin
TRPM5	29850	genome.wustl.edu	37	11	2439536	2439536	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014555.3	-1	validated	p.S256L	0.995	19	0%	22	45.5%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SLC22A18	5002	genome.wustl.edu	37	11	2940622	2940622	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000441077	+1	known	p.S119L	0.994	70	0%	98	21.4%	37	16.2%	-	-	-	NULL
NAP1L4	4676	genome.wustl.edu	37	11	2997297	2997297	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005969.3	-1	reviewed	p.R44*	0.996	183	0%	206	38.3%	26	19.2%	-	-	-	NULL
OSBPL5	114879	genome.wustl.edu	37	11	3111902	3111902	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020896.3	-1	reviewed	p.R762C	0.996	15	0%	25	72%	19	31.5%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
OSBPL5	114879	genome.wustl.edu	37	11	3115515	3115515	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020896.3	-1	reviewed	p.I557	0.001	101	0%	120	30.8%	31	22.5%	-	-	-	HMMPfam_Oxysterol_BP
OSBPL5	114879	genome.wustl.edu	37	11	3128622	3128622	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020896.3	-1	reviewed	p.E310D	0.190	186	0%	208	47.6%	15	26.6%	benign(0.019)	tolerated(0.16)	neutral(0.060)	NULL
ZNF195	7748	genome.wustl.edu	37	11	3380429	3380429	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001130520.1	-1	validated	p.E603D	1.000	144	0%	201	44.3%	5	20%	benign(0.362)	deleterious(0.01)	deleterious(0.521)	superfamily_C2H2 and C2HC zinc fingers
NUP98	4928	genome.wustl.edu	37	11	3707392	3707392	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016320.4	-1	reviewed	p.R1496Q	1.000	102	0%	148	42.6%	31	54.8%	benign(0.04)	tolerated(0.6)	neutral(0.007)	NULL
NUP98	4928	genome.wustl.edu	37	11	3723763	3723763	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016320.4	-1	reviewed	p.E1148*	0.669	125	0%	173	39.9%	8	12.5%	-	-	-	NULL
PGAP2	27315	genome.wustl.edu	37	11	3819156	3819156	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001145438.1	+1	validated	p.P28R	0.000	56	0%	99	42.4%	8	25%	probably_damaging(0.997)	-	-	NULL
TRIM21	6737	genome.wustl.edu	37	11	4406945	4406945	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003141.3	-1	reviewed	p.G333D	1.000	163	0%	191	52.4%	4	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_PRY
TRIM21	6737	genome.wustl.edu	37	11	4409565	4409565	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003141.3	-1	reviewed	p.R234*	0.008	107	0%	173	46.8%	4	0%	-	-	-	NULL
OR52K2	119774	genome.wustl.edu	37	11	4471175	4471175	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001005172.2	+1	validated	p.I202	0.991	482	0%	628	44.9%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR52I2	143502	genome.wustl.edu	37	11	4608370	4608370	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001005170.2	+1	validated	p.K110E	1.000	270	0%	396	33.1%	0	-	possibly_damaging(0.775)	deleterious(0)	deleterious(0.733)	HMMPfam_7tm_1,superfamily_SSF81321
OR51S1	119692	genome.wustl.edu	37	11	4870306	4870306	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001004758.1	-1	provisional	p.L45I	0.001	75	0%	106	46.2%	0	-	possibly_damaging(0.608)	tolerated(0.74)	neutral(0.212)	superfamily_Family A G protein-coupled receptor-like
OR52A1	23538	genome.wustl.edu	37	11	5173354	5173354	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012375.2	-1	validated	p.K82N	0.812	106	0.9%	144	50%	0	-	possibly_damaging(0.933)	tolerated(0.11)	deleterious(0.651)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
HBG2	3048	genome.wustl.edu	37	11	5275931	5275931	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000184.2	-1	reviewed	p.A10T	0.305	555	0%	659	21.7%	0	-	benign(0.002)	tolerated(0.12)	neutral(0.261)	HMMPfam_Globin,superfamily_Globin-like
OR51B4	79339	genome.wustl.edu	37	11	5322273	5322273	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033179.2	-1	validated	p.R302S	0.000	85	0%	114	41.2%	0	-	possibly_damaging(0.657)	tolerated(0.21)	neutral(0.276)	superfamily_Family A G protein-coupled receptor-like
OR51B6	390058	genome.wustl.edu	37	11	5373269	5373269	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001004750.1	+1	provisional	p.L178I	0.567	235	0%	386	44%	0	-	probably_damaging(0.975)	deleterious(0.01)	deleterious(0.823)	HMMPfam_7tm_1,superfamily_SSF81321
UBQLN3	50613	genome.wustl.edu	37	11	5530614	5530614	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017481.2	-1	reviewed	p.D59N	1.000	179	0%	199	45.7%	0	-	benign(0.001)	tolerated(0.07)	neutral(0.319)	HMMPfam_ubiquitin,HMMSmart_UBQ,superfamily_SSF54236
OR52B6	340980	genome.wustl.edu	37	11	5603006	5603006	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001005162.2	+1	validated	p.Y300	1.000	483	0%	647	42.2%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
TRIM22	10346	genome.wustl.edu	37	11	5730316	5730316	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006074.3	+1	reviewed	p.S312L	0.050	198	0%	229	46.3%	17	47%	benign(0.002)	tolerated(0.26)	neutral(0.034)	NULL
OR56B1	387748	genome.wustl.edu	37	11	5758671	5758671	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001005180.1	+1	provisional	p.A309T	0.000	118	0%	145	48.3%	0	-	benign(0)	tolerated(0.14)	neutral(0.249)	superfamily_SSF81321
OR56A5	390084	genome.wustl.edu	37	11	5989263	5989263	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_002343047.1	-1	model	p.R154S	0.000	94	2.1%	133	27.8%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR52L1	338751	genome.wustl.edu	37	11	6008070	6008070	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001005173.2	-1	validated	p.L31I	0.992	53	0%	99	49.5%	0	-	benign(0.001)	tolerated(1)	-	superfamily_Family A G protein-coupled receptor-like
OR56B4	196335	genome.wustl.edu	37	11	6129776	6129776	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001005181.1	+1	provisional	p.F256	1.000	139	0%	217	16.6%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
APBB1	322	genome.wustl.edu	37	11	6424729	6424729	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001164.2	-1	reviewed	p.E315*	1.000	230	0%	280	46.4%	0	-	-	-	-	NULL
DNHD1	144132	genome.wustl.edu	37	11	6530236	6530236	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_173589.3	+1	validated	p.H349	1.000	151	0%	176	42.6%	1	0%	-	-	-	NULL
DCHS1	8642	genome.wustl.edu	37	11	6651110	6651110	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003737.2	-1	reviewed	p.E1610K	1.000	4	0.000	12	0.333	23	4.3%	probably_damaging(0.999)	tolerated(0.1)	deleterious(0.777)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
DCHS1	8642	genome.wustl.edu	37	11	6654705	6654705	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003737.2	-1	reviewed	p.S798Y	1.000	90	0%	87	13.8%	5	0%	possibly_damaging(0.885)	tolerated(1)	neutral(0.346)	HMMPfam_Cadherin,superfamily_Cadherin
DCHS1	8642	genome.wustl.edu	37	11	6661983	6661983	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003737.2	-1	reviewed	p.G288R	1.000	42	0%	68	52.9%	10	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
OR10A5	144124	genome.wustl.edu	37	11	6867103	6867103	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_178168.1	+1	provisional	p.L64I	0.998	331	0%	465	35.5%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_7tm_1,superfamily_SSF81321
ZNF215	7762	genome.wustl.edu	37	11	6964838	6964838	+	Nonstop_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000414517	+1	known	p.*182S	0.937	345	0%	362	37.8%	0	-	-	-	-	NULL
ZNF215	7762	genome.wustl.edu	37	11	6964867	6964867	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_013250.2	+1	validated	p.I236T	0.059	283	0%	303	30%	0	-	benign(0)	tolerated(0.62)	neutral(0.004)	NULL
PPFIBP2	8495	genome.wustl.edu	37	11	7663534	7663534	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003621.2	+1	validated	p.R508Q	1.000	41	0%	67	34.3%	5	40%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
OR5P3	120066	genome.wustl.edu	37	11	7846761	7846761	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_153445.1	-1	provisional	p.G253	0.718	209	0%	298	39.9%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
NLRP10	338322	genome.wustl.edu	37	11	7981377	7981377	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_176821.3	-1	reviewed	p.K594N	0.001	234	0%	284	36.3%	0	-	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	NULL
TRIM66	9866	genome.wustl.edu	37	11	8640311	8640311	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014818.1	-1	validated	p.R1193W	1.000	37	0%	63	50.8%	2	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TRIM66	9866	genome.wustl.edu	37	11	8642732	8642732	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014818.1	-1	validated	p.R955Q	0.101	55	0%	97	14.4%	6	0%	probably_damaging(0.989)	deleterious(0.02)	deleterious(0.823)	NULL
SNORA45	677826	genome.wustl.edu	37	11	8707041	8707041	+	RNA	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NR_002977.1	+1	provisional	NULL	1.000	19	0%	18	50%	4	25%	-	-	-	-
RPL27A	6157	genome.wustl.edu	37	11	8707323	8707323	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000990.4	+1	reviewed	p.S139R	0.998	236	0%	296	44.6%	1313	42%	benign(0.006)	tolerated(0.07)	neutral(0.319)	HMMPfam_L15,PatternScan_RIBOSOMAL_L15,superfamily_Ribosomal proteins L15p and L18e
C11orf16	56673	genome.wustl.edu	37	11	8948520	8948520	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020643.2	-1	validated	p.L176I	0.287	125	0%	142	43%	0	-	possibly_damaging(0.48)	tolerated(0.24)	neutral(0.197)	NULL
ZNF143	7702	genome.wustl.edu	37	11	9516259	9516259	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003442.5	+1	validated	p.R238*	1.000	251	0%	304	42.8%	8	0%	-	-	-	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
SBF2	81846	genome.wustl.edu	37	11	9838397	9838397	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_030962.3	-1	reviewed	p.S1323L	1.000	123	0%	182	39.6%	5	40%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_(Phosphotyrosine protein) phosphatases II
SBF2	81846	genome.wustl.edu	37	11	9875182	9875182	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_030962.3	-1	reviewed	p.S814Y	1.000	224	0%	257	44.4%	11	45.4%	possibly_damaging(0.476)	tolerated(0.18)	neutral(0.213)	NULL
AMPD3	272	genome.wustl.edu	37	11	10483284	10483284	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000480.2	+1	reviewed	p.K82T	1.000	95	0%	98	37.8%	1	0%	benign(0.086)	deleterious(0.01)	neutral(0.412)	NULL
AMPD3	272	genome.wustl.edu	37	11	10524349	10524349	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000480.2	+1	reviewed	p.E651K	1.000	314	0%	444	43.5%	2	0%	possibly_damaging(0.638)	tolerated(0.28)	neutral(0.255)	HMMPfam_A_deaminase,superfamily_SSF51556
CTR9	9646	genome.wustl.edu	37	11	10774236	10774236	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014633.3	+1	provisional	p.F21	1.000	345	0%	442	45.7%	6	33.3%	-	-	-	NULL
EIF4G2	1982	genome.wustl.edu	37	11	10819386	10819386	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000429377	-1	known	p.E974*	1.000	524	0%	588	43%	248	31.4%	-	-	-	HMMPfam_W2
USP47	55031	genome.wustl.edu	37	11	11926958	11926958	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017944.3	+1	validated	p.N210H	1.000	132	0%	188	42%	60	50%	possibly_damaging(0.714)	deleterious(0.01)	deleterious(0.663)	HMMPfam_UCH,superfamily_Cysteine proteinases
PARVA	55742	genome.wustl.edu	37	11	12495459	12495459	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018222.3	+1	provisional	e3-1	1.000	139	0%	152	21.7%	0	-	-	-	-	-
ARNTL	406	genome.wustl.edu	37	11	13378564	13378564	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000403482	+1	known	p.E46*	0.000	400	0.3%	470	40%	0	-	-	-	-	NULL
FAR1	84188	genome.wustl.edu	37	11	13734630	13734630	+	Silent	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000355107	+1	known	p.P335	0.013	211	0%	312	46.8%	0	-	-	-	-	NULL
SPON1	10418	genome.wustl.edu	37	11	14276272	14276272	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006108.2	+1	validated	p.M363T	0.999	94	0%	101	36.6%	441	60.7%	unknown(0)	-	-	NULL
COPB1	1315	genome.wustl.edu	37	11	14504625	14504625	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001144061.1	-1	reviewed	p.R304C	1.000	217	0%	273	38.1%	22	40.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Adaptin_N,superfamily_ARM-type_fold
PSMA1	5682	genome.wustl.edu	37	11	14540584	14540584	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_148976.2	-1	reviewed	p.R9*	1.000	104	0%	88	45.5%	41	34.1%	-	-	-	NULL
CYP2R1	120227	genome.wustl.edu	37	11	14907448	14907448	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024514.4	-1	reviewed	p.L81I	1.000	210	0%	255	45.9%	4	0%	probably_damaging(0.965)	tolerated(0.05)	deleterious(0.752)	HMMPfam_p450,superfamily_Cytochrome_P450
PIK3C2A	5286	genome.wustl.edu	37	11	17115877	17115877	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002645.2	-1	validated	p.R1461Q	1.000	193	0%	242	42.6%	7	57.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain
PIK3C2A	5286	genome.wustl.edu	37	11	17141345	17141345	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002645.2	-1	validated	p.L945R	1.000	240	0%	320	41.6%	5	40%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_PI3Ka,HMMSmart_SM00145,superfamily_ARM repeat
ABCC8	6833	genome.wustl.edu	37	11	17419336	17419336	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000352.3	-1	reviewed	p.I1254	0.348	36	0%	53	47.2%	0	-	unknown(0)	-	-	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
USH1C	10083	genome.wustl.edu	37	11	17530966	17530966	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_153676.3	-1	reviewed	p.K650N	0.999	51	0%	70	47.1%	0	-	benign(0)	tolerated(0.83)	neutral(0.001)	NULL
MYOD1	4654	genome.wustl.edu	37	11	17741458	17741458	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002478.4	+1	reviewed	p.F43	1.000	28	0%	36	47.2%	0	-	-	-	-	HMMPfam_Basic,HMMSmart_BASIC
KCNC1	3746	genome.wustl.edu	37	11	17793587	17793587	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001112741.1	+1	reviewed	p.V316M	1.000	30	0%	45	33.3%	0	-	possibly_damaging(0.819)	deleterious(0)	deleterious(0.754)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
KCNC1	3746	genome.wustl.edu	37	11	17794062	17794062	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001112741.1	+1	reviewed	p.S474Y	1.000	42	0%	48	41.7%	0	-	possibly_damaging(0.768)	deleterious(0.01)	deleterious(0.691)	NULL
GTF2H1	2965	genome.wustl.edu	37	11	18382231	18382231	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001142307.1	+1	validated	p.R513W	1.000	253	0%	248	35.5%	12	50%	probably_damaging(0.997)	deleterious(0.05)	deleterious(0.811)	NULL
LDHA	3939	genome.wustl.edu	37	11	18427054	18427054	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005566.3	+1	reviewed	p.A257T	1.000	317	0%	334	37.7%	236	42.7%	benign(0.016)	tolerated(0.25)	neutral(0.037)	HMMPfam_Ldh_1_C,superfamily_LDH C-terminal domain-like
LDHC	3948	genome.wustl.edu	37	11	18460131	18460131	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002301.4	+1	reviewed	p.K217E	0.000	465	0%	604	48.5%	0	-	benign(0)	tolerated(1)	-	HMMPfam_Ldh_1_C,superfamily_Lactate_DH/Glyco_hydro_4_C
LDHAL6A	160287	genome.wustl.edu	37	11	18497100	18497100	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001144071.1	+1	validated	p.R169H	0.994	394	0%	363	40.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ldh_1_C,superfamily_Lactate_DH/Glyco_hydro_4_C
ENSG00000247595	0	genome.wustl.edu	37	11	18631717	18631717	+	RNA	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000501599	+1	known	NULL	0.004	9	0.000	12	0.583	0	-	-	-	-	-
PTPN5	84867	genome.wustl.edu	37	11	18754806	18754806	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006906.1	-1	validated	p.I398	1.000	63	0%	88	37.5%	0	-	-	-	-	HMMPfam_Y_phosphatase,HMMSmart_SM00194,superfamily_(Phosphotyrosine protein) phosphatases II
MRGPRX1	259249	genome.wustl.edu	37	11	18955395	18955395	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_147199.3	-1	provisional	p.L313M	0.653	188	0%	294	18.4%	0	-	possibly_damaging(0.78)	tolerated(0.08)	deleterious(0.591)	NULL
HTATIP2	10553	genome.wustl.edu	37	11	20398241	20398241	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001098520.1	+1	validated	p.N174T	0.807	406	0%	420	42.1%	2	100%	benign(0)	tolerated(0.44)	neutral(0.013)	superfamily_NAD(P)-binding Rossmann-fold domains
NELL1	4745	genome.wustl.edu	37	11	20869169	20869169	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006157.3	+1	reviewed	p.R126W	1.000	196	0%	282	41.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00282,HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases
ANO5	203859	genome.wustl.edu	37	11	22271810	22271810	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_213599.2	+1	reviewed	p.I302	0.996	471	0.2%	551	43.9%	0	-	-	-	-	NULL
SLC17A6	57084	genome.wustl.edu	37	11	22396310	22396310	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020346.2	+1	validated	p.L351	1.000	297	0%	500	42.8%	0	-	-	-	-	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
ANO3	63982	genome.wustl.edu	37	11	26656602	26656602	+	Silent	SNP	G	G	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_031418.2	+1	validated	p.R676	0.937	421	0%	561	43.3%	0	-	-	-	-	NULL
ANO3	63982	genome.wustl.edu	37	11	26669282	26669282	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_031418.2	+1	validated	p.I819L	1.000	308	0%	452	25%	0	-	probably_damaging(0.975)	tolerated(0.11)	deleterious(0.689)	HMMPfam_DUF590
ANO3	63982	genome.wustl.edu	37	11	26681839	26681839	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_031418.2	+1	validated	p.A932T	1.000	128	0%	136	35.3%	0	-	possibly_damaging(0.848)	tolerated(0.21)	neutral(0.369)	HMMPfam_DUF590
LIN7C	55327	genome.wustl.edu	37	11	27520993	27520993	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018362.3	-1	validated	p.I117	0.971	399	0%	483	38.9%	4	0%	-	-	-	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
BDNF	627	genome.wustl.edu	37	11	27679633	27679633	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001143810.1	-1	reviewed	p.S242L	1.000	126	0%	185	43.8%	0	-	benign(0.016)	deleterious(0)	neutral(0.445)	HMMPfam_NGF,HMMSmart_NGF,superfamily_SSF57501
DCDC5	100506627	genome.wustl.edu	37	11	30944175	30944175	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_002343054.1	-1	model	p.S154*	0.999	280	0%	338	47.9%	0	-	-	-	-	superfamily_Doublecortin (DC)
DCDC5	100506627	genome.wustl.edu	37	11	30953335	30953335	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_002343054.1	-1	model	p.S39	0.999	107	0%	137	40.1%	0	-	-	-	-	NULL
DCDC1	341019	genome.wustl.edu	37	11	31349787	31349787	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_181807.2	-1	validated	p.S14Y	0.000	265	0%	287	42.5%	0	-	benign(0.042)	tolerated(0.08)	neutral(0.302)	NULL
EIF3M	10480	genome.wustl.edu	37	11	32622308	32622308	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006360.3	+1	provisional	p.E291D	1.000	312	0%	346	43.1%	115	46.9%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	HMMPfam_PCI,HMMSmart_SM00088
PRRG4	79056	genome.wustl.edu	37	11	32858269	32858269	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024081.4	+1	provisional	p.L57M	1.000	212	0%	258	41.9%	0	-	probably_damaging(0.977)	deleterious(0.03)	deleterious(0.783)	HMMPfam_Gla,HMMSmart_GLA,superfamily_VitK_dep_GLA
QSER1	79832	genome.wustl.edu	37	11	32976923	32976923	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001076786.1	+1	provisional	p.R1399*	1.000	177	0%	180	43.9%	1	0%	-	-	-	NULL
DEPDC7	91614	genome.wustl.edu	37	11	33037519	33037519	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001077242.1	+1	validated	p.E6D	1.000	28	0%	48	50%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
HIPK3	10114	genome.wustl.edu	37	11	33360929	33360929	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005734.3	+1	validated	p.L488I	1.000	490	0%	659	27%	5	20%	possibly_damaging(0.886)	tolerated(0.12)	deleterious(0.607)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
NAT10	55226	genome.wustl.edu	37	11	34144047	34144047	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024662.2	+1	validated	p.K274N	1.000	181	0%	225	44.9%	6	50%	benign(0.362)	deleterious(0)	deleterious(0.559)	NULL
ABTB2	25841	genome.wustl.edu	37	11	34180875	34180875	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_145804.1	-1	provisional	p.E703K	1.000	276	0%	396	43.2%	16	68.7%	possibly_damaging(0.858)	deleterious(0.03)	deleterious(0.696)	HMMSmart_BTB,superfamily_BTB/POZ_fold,HMMPfam_BTB
CD44	960	genome.wustl.edu	37	11	35226084	35226084	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000428726	+1	known	p.R371Q	0.001	198	0%	230	43%	33	75.7%	-	-	-	NULL
CD44	960	genome.wustl.edu	37	11	35243211	35243211	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000428726	+1	known	p.S630L	1.000	267	0%	337	43%	175	36%	-	-	-	NULL
PRR5L	79899	genome.wustl.edu	37	11	36467951	36467951	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024841.4	+1	validated	p.K182	0.990	63	0%	102	47.1%	36	41.6%	-	-	-	NULL
LRRC4C	57689	genome.wustl.edu	37	11	40136975	40136975	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020929.1	-1	validated	p.L290V	1.000	110	0%	129	35.7%	2	0%	probably_damaging(0.997)	deleterious(0.03)	deleterious(0.831)	HMMPfam_LRR_1,superfamily_L domain-like
LOC399881	399881	genome.wustl.edu	37	11	43284693	43284693	+	RNA	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XR_040375.2	-1	model	NULL	0.974	32	0%	56	17.9%	0	-	-	-	-	-
API5	8539	genome.wustl.edu	37	11	43343648	43343648	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001142930.1	+1	validated	p.K169E	1.000	183	0%	261	40.2%	4	0%	probably_damaging(0.955)	tolerated(0.45)	neutral(0.411)	HMMPfam_API5,superfamily_ARM-type_fold
API5	8539	genome.wustl.edu	37	11	43345004	43345004	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001142930.1	+1	validated	p.E190*	1.000	159	0%	212	48.6%	8	0%	-	-	-	HMMPfam_API5,superfamily_ARM-type_fold
API5	8539	genome.wustl.edu	37	11	43350380	43350380	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001142930.1	+1	validated	p.R355Q	1.000	157	0%	265	42.3%	6	0%	possibly_damaging(0.923)	deleterious(0.04)	deleterious(0.722)	HMMPfam_API5,superfamily_ARM-type_fold
ALKBH3	221120	genome.wustl.edu	37	11	43940668	43940668	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_139178.3	+1	validated	p.A250	0.049	169	0%	198	14.6%	21	0%	-	-	-	NULL
ALX4	60529	genome.wustl.edu	37	11	44289063	44289063	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021926.3	-1	reviewed	p.R296Q	1.000	228	0%	232	45.7%	0	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	NULL
PRDM11	56981	genome.wustl.edu	37	11	45203866	45203866	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020229.2	+1	validated	p.I97	0.999	62	0%	107	28%	6	50%	-	-	-	NULL
MAPK8IP1	9479	genome.wustl.edu	37	11	45926566	45926566	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005456.2	+1	reviewed	p.F646L	1.000	100	0%	133	21.8%	40	27.5%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_PID,HMMSmart_PTB,superfamily_SSF50729
CREB3L1	90993	genome.wustl.edu	37	11	46338971	46338971	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_052854.2	+1	validated	p.F397L	1.000	45	0%	62	45.2%	108	46.2%	benign(0.002)	tolerated(0.28)	neutral(0.032)	NULL
AMBRA1	55626	genome.wustl.edu	37	11	46564917	46564917	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017749.2	-1	validated	p.G217V	1.000	53	0%	113	30.1%	34	32.3%	possibly_damaging(0.703)	tolerated(0.1)	deleterious(0.539)	NULL
ZNF408	79797	genome.wustl.edu	37	11	46726394	46726394	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024741.2	+1	validated	p.L382I	1.000	20	0%	24	45.8%	11	45.4%	probably_damaging(0.99)	tolerated(0.1)	deleterious(0.728)	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667
F2	2147	genome.wustl.edu	37	11	46742081	46742081	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000506.3	+1	reviewed	p.F83L	1.000	159	0%	162	45.7%	0	-	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	HMMPfam_Gla,HMMSmart_GLA,PatternScan_GLA_1,superfamily_VitK_dep_GLA
CKAP5	9793	genome.wustl.edu	37	11	46784276	46784276	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001008938.1	-1	validated	p.R1310C	1.000	233	1.3%	279	39.4%	76	38.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM repeat
CKAP5	9793	genome.wustl.edu	37	11	46802011	46802011	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001008938.1	-1	validated	p.S758	1.000	273	0%	327	10.4%	19	10.5%	-	-	-	superfamily_ARM repeat
LRP4	4038	genome.wustl.edu	37	11	46889575	46889575	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002334.3	-1	reviewed	p.S1681Y	0.030	294	0%	354	35.6%	1	0%	benign(0.008)	deleterious(0.01)	neutral(0.406)	NULL
MADD	8567	genome.wustl.edu	37	11	47297598	47297598	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003682.3	+1	reviewed	p.E270K	1.000	134	0%	205	46.3%	20	75%	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	HMMPfam_DENN,HMMSmart_SM00799
MADD	8567	genome.wustl.edu	37	11	47330948	47330948	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003682.3	+1	reviewed	p.D1350N	1.000	239	0.4%	344	17.4%	24	4.1%	possibly_damaging(0.892)	deleterious(0.01)	deleterious(0.757)	NULL
MYBPC3	4607	genome.wustl.edu	37	11	47354754	47354754	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000256.3	-1	reviewed	p.K1107N	1.000	72	0%	79	54.4%	0	-	benign(0.15)	deleterious(0)	neutral(0.458)	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
MYBPC3	4607	genome.wustl.edu	37	11	47368181	47368181	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000256.3	-1	reviewed	p.P308L	0.194	184	0.5%	230	14.3%	0	-	benign(0.071)	deleterious(0.02)	neutral(0.388)	NULL
CELF1	10658	genome.wustl.edu	37	11	47493807	47493807	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001025596.2	-1	reviewed	p.S479L	1.000	92	0%	164	43.9%	75	38.6%	unknown(0)	deleterious(0)	-	superfamily_RNA-binding domain RBD
KBTBD4	55709	genome.wustl.edu	37	11	47600558	47600558	+	RNA	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NR_024222.1	-1	validated	NULL	0.000	108	0%	144	39.6%	0	-	-	-	-	-
MTCH2	23788	genome.wustl.edu	37	11	47660337	47660337	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014342.3	-1	validated	p.D65N	1.000	132	0.8%	150	38%	108	35.1%	benign(0.123)	tolerated(0.06)	neutral(0.333)	superfamily_Mitochondrial carrier
PTPRJ	5795	genome.wustl.edu	37	11	48161157	48161157	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002843.3	+1	reviewed	p.A758T	0.000	109	0%	130	46.2%	15	60%	benign(0.027)	tolerated(0.64)	neutral(0.005)	HMMSmart_FN3,superfamily_FN_III-like
OR4X2	119764	genome.wustl.edu	37	11	48266964	48266964	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001004727.1	+1	provisional	p.E103D	0.278	136	0%	151	41.7%	0	-	probably_damaging(0.995)	tolerated(0.09)	deleterious(0.754)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR4X1	390113	genome.wustl.edu	37	11	48286210	48286210	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001004726.1	+1	provisional	p.D266	0.161	124	0%	177	47.5%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
LOC646754	646754	genome.wustl.edu	37	11	49080491	49080491	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_929704.3	-1	model	p.I58	0.007	156	0%	198	41.4%	0	-	-	-	-	superfamily_RING/U-box
FOLH1	2346	genome.wustl.edu	37	11	49168372	49168372	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004476.1	-1	reviewed	p.R730K	1.000	350	0%	388	44.8%	50	40%	benign(0.001)	tolerated(1)	-	HMMPfam_TFR_dimer,superfamily_Transferrin receptor ectodomain C-terminal domain
OR4C13	283092	genome.wustl.edu	37	11	49974774	49974774	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001001955.2	+1	validated	p.K267T	0.001	292	0%	323	39.6%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_7tm_1,superfamily_SSF81321
OR4C12	283093	genome.wustl.edu	37	11	50003584	50003584	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001005270.2	-1	validated	p.L152F	0.929	80	0%	74	39.2%	0	-	probably_damaging(0.974)	deleterious(0.04)	deleterious(0.765)	HMMPfam_7tm_1,superfamily_SSF81321
OR4A5	81318	genome.wustl.edu	37	11	51411521	51411521	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001005272.3	-1	validated	p.R292I	0.174	115	0%	137	39.4%	0	-	possibly_damaging(0.786)	tolerated(0.07)	deleterious(0.613)	superfamily_Family A G protein-coupled receptor-like
LOC440041	440041	genome.wustl.edu	37	11	55064999	55064999	+	RNA	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XR_016142.3	-1	model	NULL	0.001	200	0%	191	42.9%	0	-	-	-	-	-
OR4C15	81309	genome.wustl.edu	37	11	55321847	55321847	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001001920.1	+1	provisional	p.T22N	0.000	265	0%	309	39.2%	0	-	possibly_damaging(0.45)	-	-	NULL
OR4P4	81300	genome.wustl.edu	37	11	55405949	55405949	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001004124.1	+1	provisional	p.G39E	1.000	316	0%	388	40.7%	0	-	benign(0.146)	deleterious(0)	neutral(0.457)	HMMPfam_7tm_1,superfamily_SSF81321
OR4S2	219431	genome.wustl.edu	37	11	55418445	55418445	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001004059.2	+1	validated	p.E22	0.002	247	0%	260	39.6%	0	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
OR5L1	219437	genome.wustl.edu	37	11	55579606	55579606	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001004738.1	+1	provisional	p.L222I	0.000	231	0%	306	45.1%	0	-	possibly_damaging(0.877)	tolerated(0.78)	neutral(0.343)	HMMPfam_7tm_1,superfamily_SSF81321
OR5AS1	219447	genome.wustl.edu	37	11	55798772	55798772	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001001921.1	+1	provisional	p.R293K	0.995	132	0%	142	40.8%	0	-	possibly_damaging(0.946)	deleterious(0.02)	deleterious(0.773)	superfamily_SSF81321
OR8I2	120586	genome.wustl.edu	37	11	55861619	55861619	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001003750.1	+1	provisional	p.I279S	0.868	80	0%	133	54.1%	0	-	benign(0.02)	deleterious(0.02)	neutral(0.384)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR8J3	81168	genome.wustl.edu	37	11	55904701	55904701	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001004064.1	-1	provisional	p.S165Y	0.000	232	0%	300	46.3%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_7tm_1,superfamily_SSF81321
OR5T3	390154	genome.wustl.edu	37	11	56019848	56019848	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001004747.1	+1	provisional	p.F58S	0.620	328	0%	388	45.4%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_SSF81321
OR5T3	390154	genome.wustl.edu	37	11	56020206	56020206	+	Silent	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001004747.1	+1	provisional	p.A177	0.000	362	0%	430	37%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR5T1	390155	genome.wustl.edu	37	11	56043814	56043814	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001004745.1	+1	provisional	p.L234	0.000	272	0%	400	50%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR8H1	219469	genome.wustl.edu	37	11	56058330	56058330	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001005199.1	-1	provisional	p.D70G	0.986	462	0%	620	25.2%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR8K1	390157	genome.wustl.edu	37	11	56114392	56114392	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001002907.1	+1	provisional	p.P293L	1.000	91	0%	96	45.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
OR5M8	219484	genome.wustl.edu	37	11	56258437	56258437	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001005282.1	-1	provisional	p.K137R	0.000	59	0%	81	39.5%	0	-	benign(0)	tolerated(1)	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR5M10	390167	genome.wustl.edu	37	11	56344689	56344689	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001004741.1	-1	provisional	p.G170V	0.098	189	0.5%	266	46.2%	0	-	possibly_damaging(0.88)	deleterious(0)	deleterious(0.788)	HMMPfam_7tm_1,superfamily_SSF81321
OR5M1	390168	genome.wustl.edu	37	11	56380043	56380043	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001004740.1	-1	provisional	p.K312N	0.059	174	0%	200	44%	0	-	possibly_damaging(0.487)	tolerated(0.24)	neutral(0.200)	NULL
OR5AP2	338675	genome.wustl.edu	37	11	56408989	56408989	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001002925.1	-1	provisional	p.K309N	0.038	179	0%	168	43.5%	0	-	possibly_damaging(0.931)	tolerated(0.05)	deleterious(0.723)	superfamily_Family A G protein-coupled receptor-like
OR5AP2	338675	genome.wustl.edu	37	11	56409026	56409026	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001002925.1	-1	provisional	p.S297I	1.000	133	0%	133	39.1%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Family A G protein-coupled receptor-like
OR5AP2	338675	genome.wustl.edu	37	11	56409117	56409117	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001002925.1	-1	provisional	p.R267C	0.005	88	0%	107	44.9%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR5AR1	219493	genome.wustl.edu	37	11	56431809	56431809	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001004730.1	+1	provisional	p.I216	0.926	199	0%	247	47%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR9G1	390174	genome.wustl.edu	37	11	56468660	56468660	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001005213.1	+1	provisional	p.S266Y	0.000	369	0%	469	16.6%	0	-	possibly_damaging(0.706)	deleterious(0)	deleterious(0.699)	HMMPfam_7tm_1,superfamily_SSF81321
OR5AK3P	81228	genome.wustl.edu	37	11	56738769	56738769	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000326876	+1	known	p.L82P	0.256	114	0%	124	40.3%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR5AK3P	81228	genome.wustl.edu	37	11	56739381	56739381	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000326876	+1	known	p.N286T	1.000	29	0%	22	45.5%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
TNKS1BP1	85456	genome.wustl.edu	37	11	57077522	57077522	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033396.2	-1	validated	p.F888C	0.955	148	0%	215	15.3%	74	27%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SERPING1	710	genome.wustl.edu	37	11	57373951	57373951	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000062.2	+1	reviewed	p.I320M	0.002	285	0%	371	43.9%	9	22.2%	possibly_damaging(0.523)	deleterious(0.01)	deleterious(0.582)	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
CTNND1	1500	genome.wustl.edu	37	11	57577669	57577669	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001085458.1	+1	validated	p.E842*	1.000	186	0%	223	43%	13	7.6%	-	-	-	NULL
OR10W1	81341	genome.wustl.edu	37	11	58034940	58034940	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_207374.3	-1	validated	p.L131I	0.000	90	0%	150	47.3%	0	-	possibly_damaging(0.664)	tolerated(0.2)	neutral(0.284)	HMMPfam_7tm_1,superfamily_SSF81321
OR5B3	441608	genome.wustl.edu	37	11	58170641	58170641	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001005469.1	-1	validated	p.A81D	0.000	129	0%	174	42.5%	0	-	benign(0.01)	tolerated(0.21)	neutral(0.044)	HMMPfam_7tm_1,superfamily_SSF81321
OR5B12	390191	genome.wustl.edu	37	11	58206722	58206722	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001004733.2	-1	validated	p.K301N	0.102	180	0%	204	41.7%	0	-	benign(0.022)	deleterious(0.02)	neutral(0.384)	superfamily_SSF81321
LOC643637	643637	genome.wustl.edu	37	11	58818142	58818142	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_002343101.1	+1	model	p.L233I	0.001	36	0%	39	20.5%	0	-	-	-	-	HMMPfam_Gly_acyl_tr_N,superfamily_Acyl-CoA N-acyltransferases (Nat)
LOC100287520	100287520	genome.wustl.edu	37	11	58861476	58861476	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_002343089.1	+1	model	p.S165L	0.000	67	0%	141	24.8%	0	-	-	-	-	HMMPfam_Gly_acyl_tr_N,superfamily_Acyl-CoA N-acyltransferases (Nat)
FAM111A	63901	genome.wustl.edu	37	11	58920029	58920029	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001142519.1	+1	validated	p.I296	0.000	40	0%	53	13.2%	6	16.6%	-	-	-	NULL
OR4D10	390197	genome.wustl.edu	37	11	59245312	59245312	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001004705.1	+1	provisional	p.S137I	0.130	152	0%	217	41.5%	0	-	possibly_damaging(0.611)	deleterious(0)	deleterious(0.656)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
MS4A3	932	genome.wustl.edu	37	11	59828709	59828709	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006138.4	+1	reviewed	p.P26S	0.001	141	0.7%	183	38.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MS4A14	84689	genome.wustl.edu	37	11	60183412	60183412	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032597.3	+1	validated	p.A324V	0.000	126	0%	164	39.6%	0	-	possibly_damaging(0.836)	tolerated(0.07)	deleterious(0.639)	NULL
MS4A14	84689	genome.wustl.edu	37	11	60183859	60183859	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032597.3	+1	validated	p.S473Y	0.001	98	0%	96	17.7%	0	-	benign(0.002)	tolerated(0.17)	neutral(0.059)	NULL
MS4A5	64232	genome.wustl.edu	37	11	60198365	60198365	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_023945.2	+1	reviewed	p.L84I	0.398	387	0%	504	26.4%	0	-	benign(0.001)	tolerated(0.92)	-	HMMPfam_CD20
MS4A12	54860	genome.wustl.edu	37	11	60274548	60274548	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017716.2	+1	reviewed	p.S252Y	0.002	354	0%	422	43.8%	0	-	probably_damaging(0.964)	tolerated(0.11)	deleterious(0.678)	NULL
CCDC86	79080	genome.wustl.edu	37	11	60615459	60615459	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024098.3	+1	validated	p.R274Q	0.985	70	0%	91	47.3%	5	40%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
VWCE	220001	genome.wustl.edu	37	11	61045929	61045929	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152718.2	-1	validated	p.V448	0.036	200	0%	195	42.1%	2	50%	-	-	-	HMMPfam_VWC,HMMSmart_SM00214,HMMSmart_SM00215
FADS2	9415	genome.wustl.edu	37	11	61631196	61631196	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004265.2	+1	reviewed	p.N365	0.960	108	0%	121	44.6%	453	45%	-	-	-	HMMPfam_FA_desaturase
RAB3IL1	5866	genome.wustl.edu	37	11	61675086	61675086	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_013401.2	-1	provisional	p.R104Q	1.000	63	0%	95	35.8%	12	8.3%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	HMMPfam_Sec2p
BEST1	7439	genome.wustl.edu	37	11	61724402	61724402	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001139443.1	+1	reviewed	p.N130D	1.000	63	0%	100	18%	1	0%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	HMMPfam_Bestrophin
FTH1	2495	genome.wustl.edu	37	11	61732251	61732251	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002032.2	-1	reviewed	p.A167V	0.999	201	0%	235	45.1%	6975	42.5%	benign(0.072)	deleterious(0.01)	neutral(0.411)	superfamily_Ferritin-like
AHNAK	79026	genome.wustl.edu	37	11	62291637	62291637	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001620.1	-1	validated	p.P3418S	1.000	149	0%	174	48.9%	5	40%	probably_damaging(0.99)	tolerated(0.09)	deleterious(0.738)	NULL
EEF1G	1937	genome.wustl.edu	37	11	62339038	62339038	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001404.4	-1	reviewed	p.L118V	1.000	122	0%	157	38.2%	2512	42.3%	benign(0.036)	tolerated(0.1)	neutral(0.288)	HMMPfam_GST_C,superfamily_Glutathione S-transferase (GST) C-terminal domain
TUT1	64852	genome.wustl.edu	37	11	62343184	62343184	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_022830.2	-1	reviewed	p.C669	0.000	309	0%	388	38.4%	43	44.1%	-	-	-	NULL
EML3	256364	genome.wustl.edu	37	11	62375716	62375716	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_153265.2	-1	validated	p.S388L	1.000	207	0%	378	50.5%	12	50%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	superfamily_WD40 repeat-like
HNRNPUL2	221092	genome.wustl.edu	37	11	62490151	62490151	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001079559.1	-1	provisional	p.R339	0.998	289	0.3%	365	21.1%	96	22.9%	-	-	-	HMMPfam_SPRY,HMMSmart_SPRY
TMEM223	79064	genome.wustl.edu	37	11	62558172	62558172	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001080501.2	-1	validated	p.F178V	1.000	116	0%	94	38.3%	20	55%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	NULL
NXF1	10482	genome.wustl.edu	37	11	62568568	62568568	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006362.4	-1	reviewed	p.E302*	1.000	222	0%	222	43.2%	36	22.2%	-	-	-	HMMPfam_LRR_1,superfamily_SSF52058
SLC22A8	9376	genome.wustl.edu	37	11	62763577	62763577	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004254.3	-1	reviewed	p.S270L	0.001	69	0%	113	38.1%	0	-	benign(0.004)	deleterious(0.01)	neutral(0.406)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
SLC22A24	283238	genome.wustl.edu	37	11	62911161	62911161	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001136506.1	-1	validated	p.L31M	0.000	119	0%	174	46.6%	0	-	possibly_damaging(0.903)	tolerated(0.32)	neutral(0.382)	NULL
SLC22A25	387601	genome.wustl.edu	37	11	62948223	62948223	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_199352.3	-1	validated	p.E327*	0.997	220	0%	285	42.5%	0	-	-	-	-	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
RARRES3	5920	genome.wustl.edu	37	11	63307023	63307023	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004585.3	+1	validated	p.E15D	0.999	332	0%	347	37.2%	12	50%	probably_damaging(0.963)	deleterious(0.02)	deleterious(0.788)	NULL
RTN3	10313	genome.wustl.edu	37	11	63472322	63472322	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_201429.1	+1	validated	e2-1	1.000	693	0%	826	45.2%	0	-	-	-	-	-
FLRT1	23769	genome.wustl.edu	37	11	63884779	63884779	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_013280.4	+1	reviewed	p.A347V	0.981	44	0%	58	43.1%	9	55.5%	possibly_damaging(0.935)	deleterious(0.05)	deleterious(0.726)	HMMSmart_SM00082,superfamily_L domain-like
PLCB3	5331	genome.wustl.edu	37	11	64022874	64022874	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000932.2	+1	reviewed	p.T158	0.032	144	0.7%	158	45.6%	26	42.3%	-	-	-	NULL
CCDC88B	283234	genome.wustl.edu	37	11	64124642	64124642	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000359902	+1	known	p.K607N	0.001	35	0%	58	50%	9	11.1%	unknown(0)	-	-	NULL
NRXN2	9379	genome.wustl.edu	37	11	64417932	64417932	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015080.2	-1	reviewed	p.L1033I	1.000	127	0%	163	46%	3	0%	possibly_damaging(0.95)	deleterious(0.01)	deleterious(0.799)	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
EHD1	10938	genome.wustl.edu	37	11	64622006	64622006	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006795.2	-1	reviewed	p.K468N	1.000	125	0%	176	45.5%	172	42.4%	possibly_damaging(0.818)	deleterious(0.01)	deleterious(0.715)	HMMSmart_SM00027,superfamily_EF-hand
FAU	2197	genome.wustl.edu	37	11	64889081	64889081	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001997.3	-1	reviewed	p.E37D	1.000	63	0%	70	41.4%	2413	42.3%	benign(0.036)	tolerated(0.69)	neutral(0.004)	HMMPfam_ubiquitin,HMMSmart_SM00213,PatternScan_UBIQUITIN_1,superfamily_Ubiquitin-like
LOC100287960	100287960	genome.wustl.edu	37	11	64913254	64913254	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_002343095.1	-1	model	p.R95C	1.000	60	0%	88	43.2%	0	-	-	-	-	HMMPfam_HIG_1_N
LOC100287960	100287960	genome.wustl.edu	37	11	64913404	64913404	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_002343095.1	-1	model	p.E45K	0.975	19	0%	14	50%	0	-	-	-	-	HMMPfam_HIG_1_N
LOC440043	440043	genome.wustl.edu	37	11	64942920	64942920	+	RNA	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XR_015843.3	-1	model	NULL	1.000	20	0%	33	21.2%	3	0%	-	-	-	-
SLC22A20	440044	genome.wustl.edu	37	11	65003974	65003974	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001004326.4	+1	validated	p.P397S	1.000	36	0%	69	30.4%	0	-	-	-	-	NULL
SCYL1	57410	genome.wustl.edu	37	11	65305743	65305743	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020680.3	+1	reviewed	p.P750	0.000	34	0%	46	34.8%	182	48.9%	benign(0)	tolerated(0.68)	neutral(0.002)	NULL
LTBP3	4054	genome.wustl.edu	37	11	65308627	65308627	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001130144.2	-1	reviewed	p.E955K	1.000	33	0%	48	37.5%	399	44.6%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_TB,superfamily_TB module/8-cys domain
SNX32	254122	genome.wustl.edu	37	11	65618832	65618832	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152760.2	+1	validated	p.A248V	0.152	97	0%	133	51.1%	1	0%	benign(0.352)	deleterious(0.05)	neutral(0.457)	HMMPfam_Vps5
CATSPER1	117144	genome.wustl.edu	37	11	65793456	65793456	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_053054.3	-1	reviewed	p.Y132C	0.004	86	0%	83	36.1%	0	-	probably_damaging(0.995)	deleterious(0.02)	deleterious(0.841)	NULL
SF3B2	10992	genome.wustl.edu	37	11	65827418	65827418	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006842.2	+1	reviewed	p.E523K	0.984	48	2.1%	60	43.3%	253	47.8%	benign(0.424)	tolerated(0.27)	neutral(0.171)	HMMPfam_DUF382
PACS1	55690	genome.wustl.edu	37	11	66009076	66009076	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018026.2	+1	reviewed	p.S870A	0.980	65	0%	73	37%	62	70.9%	benign(0.002)	tolerated(0.92)	-	HMMPfam_Pacs-1
YIF1A	10897	genome.wustl.edu	37	11	66053206	66053206	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020470.2	-1	validated	p.L151F	0.992	40	0%	55	41.8%	244	46.3%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_YIF1
BRMS1	25855	genome.wustl.edu	37	11	66108474	66108474	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001024957.1	-1	reviewed	p.Y134	0.857	143	0%	180	43.3%	48	39.5%	-	-	-	HMMPfam_Sds3
NPAS4	266743	genome.wustl.edu	37	11	66190667	66190667	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_178864.3	+1	validated	p.D258Y	1.000	127	0%	163	46%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_PAS,HMMPfam_PAS_3,superfamily_SSF55785
NPAS4	266743	genome.wustl.edu	37	11	66191547	66191547	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_178864.3	+1	validated	p.E396*	0.991	108	0%	120	50.8%	0	-	-	-	-	NULL
ZDHHC24	254359	genome.wustl.edu	37	11	66311393	66311393	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_207340.1	-1	provisional	p.R114H	0.986	11	0%	22	50%	120	55.8%	probably_damaging(0.998)	tolerated(0.15)	deleterious(0.716)	HMMPfam_zf-DHHC
RBM4B	83759	genome.wustl.edu	37	11	66436178	66436178	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_031492.2	-1	provisional	p.A333T	0.997	84	0%	95	36.8%	24	41.6%	benign(0)	tolerated(0.12)	neutral(0.261)	NULL
C11orf80	79703	genome.wustl.edu	37	11	66571536	66571536	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024650.3	+1	validated	p.L305F	0.250	200	0%	275	42.5%	8	37.5%	probably_damaging(0.976)	tolerated(0.46)	neutral(0.430)	NULL
KDM2A	22992	genome.wustl.edu	37	11	66975023	66975023	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012308.2	+1	reviewed	p.K117T	1.000	60	0%	64	18.8%	42	26.1%	possibly_damaging(0.857)	tolerated(0.06)	deleterious(0.653)	superfamily_Clavaminate synthase-like
KDM2A	22992	genome.wustl.edu	37	11	67010552	67010552	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012308.2	+1	reviewed	p.K518Q	1.000	316	0%	457	44%	22	40.9%	possibly_damaging(0.952)	tolerated(0.1)	deleterious(0.682)	NULL
ALDH3B2	222	genome.wustl.edu	37	11	67434155	67434155	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000695.3	-1	reviewed	p.L14P	0.412	92	0%	134	35.8%	61	34.4%	probably_damaging(0.998)	tolerated(0.43)	deleterious(0.488)	NULL
UNC93B1	81622	genome.wustl.edu	37	11	67764105	67764105	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000227471	-1	known	p.E352K	1.000	73	0%	68	20.6%	139	10.7%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
TCIRG1	10312	genome.wustl.edu	37	11	67811376	67811376	+	Splice_Site	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006019.2	+1	reviewed	e7+2	1.000	37	0%	52	36.5%	4	75%	-	-	-	-
CHKA	1119	genome.wustl.edu	37	11	67829447	67829447	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001277.2	-1	reviewed	p.K429N	1.000	116	0%	141	46.8%	25	48%	benign(0.354)	tolerated(0.14)	neutral(0.361)	superfamily_Protein kinase-like (PK-like)
SUV420H1	51111	genome.wustl.edu	37	11	67925969	67925969	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017635.3	-1	reviewed	p.R615Q	0.587	297	0%	385	42.1%	21	52.3%	benign(0.144)	deleterious(0)	neutral(0.457)	NULL
SUV420H1	51111	genome.wustl.edu	37	11	67926198	67926198	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017635.3	-1	reviewed	p.R539W	0.961	136	0%	134	44%	12	58.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LRP5	4041	genome.wustl.edu	37	11	68181183	68181183	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002335.2	+1	reviewed	p.D844N	1.000	25	0%	42	40.5%	326	50.3%	benign(0.076)	tolerated(0.48)	neutral(0.016)	HMMPfam_Ldl_recept_b,HMMSmart_SM00135,superfamily_YWTD domain
PPP6R3	55291	genome.wustl.edu	37	11	68305295	68305295	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018312.4	+1	validated	p.E55K	1.000	198	0%	308	42.9%	7	14.2%	possibly_damaging(0.934)	deleterious(0.01)	deleterious(0.786)	NULL
IGHMBP2	3508	genome.wustl.edu	37	11	68685276	68685276	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002180.2	+1	reviewed	p.E329*	0.996	194	0%	194	38.7%	4	0%	-	-	-	HMMSmart_SM00382,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
MRGPRD	116512	genome.wustl.edu	37	11	68748161	68748161	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_198923.2	-1	validated	p.E99K	0.021	55	0%	71	42.3%	1	0%	possibly_damaging(0.8)	tolerated(0.76)	neutral(0.302)	HMMPfam_7tm_1,superfamily_SSF81321
SHANK2	22941	genome.wustl.edu	37	11	70336410	70336410	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012309.3	-1	reviewed	p.R246Q	1.000	139	0%	189	12.7%	8	0%	benign(0.242)	tolerated(0.15)	neutral(0.266)	NULL
DHCR7	1717	genome.wustl.edu	37	11	71152377	71152377	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001360.2	-1	reviewed	p.F174	0.994	172	0%	258	47.3%	84	44%	-	-	-	HMMPfam_ERG4_ERG24
LRTOMT	220074	genome.wustl.edu	37	11	71804745	71804745	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_145309.2	+1	validated	p.P96S	1.000	79	0%	77	51.9%	38	52.6%	benign(0.003)	tolerated(0.52)	neutral(0.009)	HMMPfam_LRR_1,superfamily_L domain-like
LRTOMT	220074	genome.wustl.edu	37	11	71817098	71817098	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001145308.1	+1	validated	p.R67Q	0.986	34	0%	34	44.1%	1	100%	possibly_damaging(0.783)	tolerated(0.54)	neutral(0.300)	NULL
FOLR2	2350	genome.wustl.edu	37	11	71929626	71929626	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000321324	+1	known	p.D17Y	0.000	96	0%	135	43.7%	11	0%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
LOC220077	220077	genome.wustl.edu	37	11	71961499	71961499	+	RNA	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XR_017002.2	-1	model	NULL	0.002	30	0%	23	39.1%	0	-	-	-	-	-
STARD10	10809	genome.wustl.edu	37	11	72466025	72466025	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006645.2	-1	validated	p.E265K	1.000	20	0%	39	56.4%	333	45%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
STARD10	10809	genome.wustl.edu	37	11	72470355	72470355	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006645.2	-1	validated	p.K93N	1.000	149	0%	203	36.9%	498	44.5%	possibly_damaging(0.45)	deleterious(0.01)	deleterious(0.553)	HMMPfam_START,HMMSmart_START,superfamily_SSF55961
ARHGEF17	9828	genome.wustl.edu	37	11	73020981	73020981	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014786.3	+1	validated	p.R433Q	0.293	18	0%	33	24.2%	3	33.3%	probably_damaging(0.954)	deleterious(0)	deleterious(0.842)	NULL
ARHGEF17	9828	genome.wustl.edu	37	11	73075572	73075572	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014786.3	+1	validated	p.S1826Y	0.987	77	0%	92	19.6%	17	0%	benign(0.237)	deleterious(0.02)	neutral(0.407)	superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase
RELT	84957	genome.wustl.edu	37	11	73102217	73102217	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032871.3	+1	reviewed	p.V106I	0.002	220	0%	291	39.9%	2	50%	possibly_damaging(0.815)	tolerated(0.28)	neutral(0.339)	NULL
SLCO2B1	11309	genome.wustl.edu	37	11	74880308	74880308	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007256.3	+1	validated	p.Y180C	0.000	96	0%	116	19.8%	4	0%	benign(0.257)	tolerated(0.09)	neutral(0.323)	HMMPfam_OATP,superfamily_MFS general substrate transporter
MAP6	4135	genome.wustl.edu	37	11	75316859	75316859	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033063.1	-1	reviewed	p.A437V	1.000	209	0%	238	43.3%	2	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_STOP
MOGAT2	80168	genome.wustl.edu	37	11	75438666	75438666	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_025098.2	+1	provisional	p.D153Y	1.000	135	0%	154	39%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_DAGAT
UVRAG	7405	genome.wustl.edu	37	11	75599883	75599883	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003369.3	+1	reviewed	p.R148Q	1.000	349	0%	381	40.7%	3	0%	benign(0.196)	tolerated(0.68)	neutral(0.020)	NULL
C11orf30	56946	genome.wustl.edu	37	11	76170984	76170984	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020193.3	+1	validated	p.V142	1.000	112	0%	166	45.2%	23	60.8%	-	-	-	NULL
LRRC32	2615	genome.wustl.edu	37	11	76370682	76370682	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001128922.1	-1	reviewed	p.R652H	1.000	167	0%	222	45%	5	0%	probably_damaging(0.995)	deleterious(0.02)	deleterious(0.841)	NULL
LRRC32	2615	genome.wustl.edu	37	11	76371471	76371471	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001128922.1	-1	reviewed	p.R389Q	0.008	12	0%	25	44%	2	0%	benign(0.027)	tolerated(0.21)	neutral(0.045)	HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52058
CAPN5	726	genome.wustl.edu	37	11	76825400	76825400	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004055.4	+1	reviewed	p.D207Y	0.938	99	0%	143	37.1%	20	35%	probably_damaging(0.999)	tolerated(0.13)	deleterious(0.743)	HMMPfam_Peptidase_C2,HMMSmart_CysPc,superfamily_SSF54001
MYO7A	4647	genome.wustl.edu	37	11	76895799	76895799	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001127179.2	+1	reviewed	p.S1181Y	0.000	21	0%	14	42.9%	0	-	unknown(0)	-	-	HMMSmart_SM00139
MYO7A	4647	genome.wustl.edu	37	11	76922216	76922216	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000260.3	+1	reviewed	p.R2024Q	1.000	24	0%	59	40.7%	2	100%	probably_damaging(0.99)	tolerated(0.11)	deleterious(0.713)	HMMPfam_FERM_M,superfamily_Second domain of FERM,HMMSmart_SM00295
GDPD4	220032	genome.wustl.edu	37	11	76938956	76938956	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_182833.1	-1	provisional	p.R493I	0.136	221	0%	237	43%	0	-	benign(0.229)	deleterious(0)	neutral(0.468)	NULL
CLNS1A	1207	genome.wustl.edu	37	11	77340861	77340861	+	Missense_Mutation	SNP	C	C	T	rs35303781		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001293.2	-1	reviewed	p.R70Q	0.322	292	0%	376	43.4%	63	47.6%	benign(0)	tolerated(0.58)	neutral(0.005)	HMMPfam_ICln_channel
CCDC90B	60492	genome.wustl.edu	37	11	82976919	82976919	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021825.3	-1	provisional	p.R233C	1.000	499	0%	590	39.7%	19	36.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DUF1640
DLG2	1740	genome.wustl.edu	37	11	83243758	83243758	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001142699.1	-1	reviewed	p.S729L	1.000	418	0%	409	43%	0	-	benign(0.102)	deleterious(0.05)	neutral(0.353)	superfamily_SH3-domain
DLG2	1740	genome.wustl.edu	37	11	84245711	84245711	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001142699.1	-1	reviewed	p.V141L	1.000	297	0%	438	14.6%	0	-	benign(0.018)	tolerated(0.12)	neutral(0.261)	HMMPfam_MAGUK_N_PEST
CCDC83	220047	genome.wustl.edu	37	11	85597400	85597400	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_173556.3	+1	provisional	p.E167D	0.996	154	0%	192	35.4%	0	-	probably_damaging(0.99)	deleterious(0.05)	deleterious(0.787)	NULL
EED	8726	genome.wustl.edu	37	11	85977204	85977204	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003797.2	+1	reviewed	p.R269I	1.000	184	0%	203	47.3%	5	0%	benign(0.002)	tolerated(0.12)	neutral(0.261)	superfamily_WD40 repeat-like
CCDC81	60494	genome.wustl.edu	37	11	86120375	86120375	+	Silent	SNP	A	A	C	rs141409069	by1000genomes	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021827.4	+1	validated	p.R306	0.080	129	0%	156	35.3%	0	-	-	-	-	NULL
ME3	10873	genome.wustl.edu	37	11	86158143	86158143	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001014811.1	-1	reviewed	p.A448	0.991	64	0%	120	45%	5	0%	-	-	-	HMMPfam_Malic_M,superfamily_NAD(P)-bd
ME3	10873	genome.wustl.edu	37	11	86219860	86219860	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001014811.1	-1	reviewed	p.N173H	1.000	174	0%	254	38.2%	7	14.2%	benign(0.205)	tolerated(0.13)	neutral(0.273)	HMMPfam_malic,superfamily_SSF53223
FZD4	8322	genome.wustl.edu	37	11	86662347	86662347	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012193.2	-1	reviewed	p.S484Y	1.000	125	0.8%	186	41.4%	0	-	probably_damaging(0.976)	tolerated(1)	neutral(0.418)	HMMPfam_Frizzled
TMEM135	65084	genome.wustl.edu	37	11	87013343	87013343	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_022918.3	+1	validated	p.I186S	1.000	222	0%	256	46.5%	3	66.6%	possibly_damaging(0.561)	deleterious(0.02)	deleterious(0.575)	NULL
GRM5	2915	genome.wustl.edu	37	11	88338068	88338068	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001143831.2	-1	reviewed	p.I404	1.000	95	0%	118	42.4%	0	-	-	-	-	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
TYR	7299	genome.wustl.edu	37	11	88911925	88911925	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000372.4	+1	reviewed	p.F268L	1.000	123	0%	133	22.6%	0	-	benign(0.001)	tolerated(0.24)	neutral(0.037)	HMMPfam_Tyrosinase,superfamily_Di-copper centre-containing domain
NOX4	50507	genome.wustl.edu	37	11	89133548	89133548	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016931.3	-1	reviewed	e10-1	1.000	80	0%	96	22.9%	0	-	-	-	-	-
NOX4	50507	genome.wustl.edu	37	11	89185036	89185036	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016931.3	-1	reviewed	p.A61T	0.982	241	0%	336	25%	5	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ferric_reduct
TRIM77P	390231	genome.wustl.edu	37	11	89444633	89444633	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_002343107.1	+1	model	p.R156I	0.943	180	0%	225	41.8%	0	-	-	-	-	NULL
TRIM64B	642446	genome.wustl.edu	37	11	89607345	89607345	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000329862	-1	known	p.E203*	0.001	337	0.3%	439	26.4%	0	-	-	-	-	NULL
TRIM64B	642446	genome.wustl.edu	37	11	89608181	89608181	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000329862	-1	known	p.L157I	0.000	732	0%	878	18.9%	0	-	possibly_damaging(0.857)	tolerated(0.15)	deleterious(0.572)	NULL
CHORDC1	26973	genome.wustl.edu	37	11	89936572	89936572	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012124.2	-1	validated	p.R231	0.999	234	0%	291	41.9%	16	75%	-	-	-	superfamily_HSP20-like chaperones,HMMPfam_CS
FAT3	120114	genome.wustl.edu	37	11	92086875	92086875	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001008781.2	+1	validated	p.E533*	0.485	81	0%	114	43.9%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
FAT3	120114	genome.wustl.edu	37	11	92087084	92087084	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001008781.2	+1	validated	p.A602	0.001	66	0%	113	43.4%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
FAT3	120114	genome.wustl.edu	37	11	92087888	92087888	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001008781.2	+1	validated	p.V870	0.958	152	0%	182	48.9%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
FAT3	120114	genome.wustl.edu	37	11	92532848	92532848	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001008781.2	+1	validated	p.I2223	0.038	104	0%	124	45.2%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
KIAA1731	85459	genome.wustl.edu	37	11	93431337	93431337	+	Silent	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033395.1	+1	validated	p.R1087	0.001	55	0%	74	45.9%	3	100%	-	-	-	NULL
KIAA1731	85459	genome.wustl.edu	37	11	93431983	93431983	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033395.1	+1	validated	p.S1302L	0.005	96	0%	139	48.9%	1	0%	possibly_damaging(0.873)	deleterious(0)	deleterious(0.784)	NULL
KIAA1731	85459	genome.wustl.edu	37	11	93456242	93456242	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033395.1	+1	validated	p.E1995*	0.974	93	0%	95	15.8%	0	-	-	-	-	NULL
KIAA1731	85459	genome.wustl.edu	37	11	93458827	93458827	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033395.1	+1	validated	p.S2110Y	0.008	198	0%	261	38.7%	2	0%	probably_damaging(0.982)	tolerated(0.21)	deleterious(0.470)	NULL
KIAA1731	85459	genome.wustl.edu	37	11	93462912	93462912	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033395.1	+1	validated	p.S2511Y	0.032	107	0%	132	40.9%	2	100%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	NULL
HEPHL1	341208	genome.wustl.edu	37	11	93839288	93839288	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001098672.1	+1	validated	p.L1013I	1.000	192	0%	253	21.7%	0	-	benign(0.001)	tolerated(0.32)	neutral(0.024)	superfamily_Cupredoxin,HMMPfam_Cu-oxidase_2
HEPHL1	341208	genome.wustl.edu	37	11	93844857	93844857	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001098672.1	+1	validated	e20-1	0.986	87	0%	97	21.6%	0	-	-	-	-	-
MRE11A	4361	genome.wustl.edu	37	11	94204822	94204822	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005591.3	-1	reviewed	p.K255E	1.000	302	0%	394	45.7%	9	33.3%	benign(0.039)	tolerated(0.28)	neutral(0.034)	HMMPfam_Mre11_DNA_bind,superfamily_Metallo-dependent phosphatases
MRE11A	4361	genome.wustl.edu	37	11	94224109	94224109	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005591.3	-1	reviewed	p.I15L	1.000	202	0%	301	19.9%	2	0%	benign(0.169)	deleterious(0.01)	neutral(0.421)	HMMPfam_Metallophos,superfamily_Metallo-dependent phosphatases
PIWIL4	143689	genome.wustl.edu	37	11	94322298	94322298	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152431.2	+1	validated	p.R309I	1.000	225	0%	276	36.6%	4	0%	possibly_damaging(0.816)	deleterious(0)	deleterious(0.753)	HMMPfam_PAZ,superfamily_PAZ domain
KDM4DL	390245	genome.wustl.edu	37	11	94759461	94759461	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000450979	+1	known	p.S247L	1.000	64	0%	96	56.2%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_JmjC,HMMPfam_JmjC
SESN3	143686	genome.wustl.edu	37	11	94924638	94924638	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_144665.2	-1	provisional	p.R91Q	1.000	134	0%	215	44.7%	10	50%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_PA26
MAML2	84441	genome.wustl.edu	37	11	95825573	95825573	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032427.1	-1	validated	p.F541C	0.004	92	0%	134	39.6%	6	33.3%	unknown(0)	tolerated(0.12)	-	NULL
CCDC82	79780	genome.wustl.edu	37	11	96116521	96116521	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024725.3	-1	validated	p.Q301H	0.780	519	0.2%	653	44.3%	7	57.1%	benign(0.267)	tolerated(0.09)	neutral(0.325)	NULL
JRKL	8690	genome.wustl.edu	37	11	96124620	96124620	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003772.3	+1	reviewed	p.I269M	1.000	104	0%	112	49.1%	6	83.3%	possibly_damaging(0.475)	tolerated(0.22)	neutral(0.199)	HMMPfam_DDE
C11orf70	85016	genome.wustl.edu	37	11	101953829	101953829	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032930.1	+1	predicted	p.A197T	0.001	171	0%	252	30.2%	1	0%	benign(0)	tolerated(0.57)	neutral(0.006)	NULL
MMP7	4316	genome.wustl.edu	37	11	102395704	102395704	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002423.3	-1	reviewed	p.F192	1.000	61	0%	96	49%	28	53.5%	-	-	-	HMMPfam_Peptidase_M10,HMMSmart_ZnMc,superfamily_SSF55486
MMP8	4317	genome.wustl.edu	37	11	102593330	102593330	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002424.2	-1	reviewed	p.I59	0.003	330	0%	341	48.4%	0	-	-	-	-	HMMPfam_PG_binding_1,superfamily_PGBD_like
DYNC2H1	79659	genome.wustl.edu	37	11	102984967	102984967	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001080463.1	+1	reviewed	p.G168C	1.000	147	0%	128	47.7%	0	-	probably_damaging(0.996)	tolerated(0.09)	deleterious(0.758)	HMMPfam_DHC_N1
DYNC2H1	79659	genome.wustl.edu	37	11	103041640	103041640	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001080463.1	+1	reviewed	p.R1726Q	0.997	810	0.1%	930	45.8%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
DYNC2H1	79659	genome.wustl.edu	37	11	103041687	103041687	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001080463.1	+1	reviewed	p.E1742*	1.000	852	0%	926	41.4%	0	-	-	-	-	HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
DYNC2H1	79659	genome.wustl.edu	37	11	103130639	103130639	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001080463.1	+1	reviewed	p.R3550I	1.000	127	0%	142	46.5%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
DDI1	414301	genome.wustl.edu	37	11	103907774	103907774	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001001711.2	+1	validated	p.L75P	0.006	61	0%	93	17.2%	0	-	possibly_damaging(0.942)	tolerated(0.24)	neutral(0.424)	HMMPfam_ubiquitin,HMMSmart_UBQ,superfamily_SSF54236
CASP1	834	genome.wustl.edu	37	11	104904999	104904999	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033292.2	-1	reviewed	p.Q70H	0.000	456	0%	558	24.6%	6	0%	benign(0.136)	deleterious(0.01)	neutral(0.417)	HMMPfam_CARD,HMMSmart_SM00114,superfamily_DEATH domain
CARD16	114769	genome.wustl.edu	37	11	104914259	104914259	+	Silent	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_052889.2	-1	validated	p.G96	0.015	292	0%	346	44.5%	5	0%	-	-	-	NULL
GRIA4	2893	genome.wustl.edu	37	11	105797506	105797506	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000829.3	+1	reviewed	p.F629L	1.000	233	0%	289	38.4%	0	-	probably_damaging(0.967)	deleterious(0)	deleterious(0.853)	HMMPfam_Lig_chan,HMMSmart_PBPe,superfamily_SSF53850
MSANTD4	84437	genome.wustl.edu	37	11	105881570	105881570	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032424.1	-1	validated	p.T25	0.918	161	0%	256	37.5%	0	-	-	-	-	NULL
KBTBD3	143879	genome.wustl.edu	37	11	105929686	105929686	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152433.3	-1	validated	p.E47K	1.000	208	0%	277	42.6%	3	66.6%	possibly_damaging(0.471)	tolerated(0.13)	neutral(0.408)	superfamily_POZ domain,HMMPfam_BTB
AASDHPPT	60496	genome.wustl.edu	37	11	105967614	105967614	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015423.2	+1	reviewed	p.R304*	0.637	150	0%	212	38.7%	17	47%	-	-	-	NULL
GUCY1A2	2977	genome.wustl.edu	37	11	106849393	106849393	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000855.1	-1	validated	p.E147*	0.991	385	0%	424	44.3%	0	-	-	-	-	HMMPfam_HNOB
CWF19L2	143884	genome.wustl.edu	37	11	107299910	107299910	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152434.2	-1	validated	p.E350*	0.088	342	0%	337	40.1%	0	-	-	-	-	NULL
CWF19L2	143884	genome.wustl.edu	37	11	107325236	107325236	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152434.2	-1	validated	p.K93N	1.000	497	0%	536	39.9%	0	-	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	NULL
RAB39A	54734	genome.wustl.edu	37	11	107832954	107832954	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017516.1	+1	provisional	p.I170	0.993	139	0%	206	46.6%	0	-	-	-	-	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
ACAT1	38	genome.wustl.edu	37	11	108004590	108004590	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000019.3	+1	reviewed	p.F55C	1.000	162	0%	202	40.1%	33	60.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Thiolase_N,superfamily_Thiolase-like
ATM	472	genome.wustl.edu	37	11	108198431	108198431	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000051.3	+1	reviewed	p.L2345F	1.000	191	0%	199	16.6%	3	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_FAT,superfamily_ARM repeat
DDX10	1662	genome.wustl.edu	37	11	108586616	108586616	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004398.2	+1	reviewed	p.E445*	1.000	152	0%	147	19%	0	-	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
DDX10	1662	genome.wustl.edu	37	11	108586679	108586679	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004398.2	+1	reviewed	p.E466*	1.000	161	0%	150	36.7%	1	0%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
DDX10	1662	genome.wustl.edu	37	11	108722882	108722882	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004398.2	+1	reviewed	p.E750D	0.999	187	0%	255	41.2%	3	66.6%	probably_damaging(0.996)	tolerated(0.32)	deleterious(0.486)	NULL
RDX	5962	genome.wustl.edu	37	11	110108287	110108287	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002906.3	-1	reviewed	p.R394Q	0.900	339	0%	420	43.8%	12	33.3%	benign(0.001)	tolerated(1)	-	HMMPfam_ERM
RDX	5962	genome.wustl.edu	37	11	110134866	110134866	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002906.3	-1	reviewed	p.E96*	1.000	157	0%	172	61.6%	0	-	-	-	-	HMMPfam_FERM_M,superfamily_Second domain of FERM,HMMSmart_SM00295
ARHGAP20	57569	genome.wustl.edu	37	11	110450473	110450473	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020809.2	-1	validated	p.S1066Y	0.001	67	0%	77	35.1%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
LAYN	143903	genome.wustl.edu	37	11	111414717	111414717	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_178834.3	+1	provisional	p.R52Q	0.997	99	0%	112	43.8%	0	-	benign(0.033)	tolerated(0.48)	neutral(0.012)	HMMPfam_Lectin_C,HMMSmart_CLECT,superfamily_C-type_lectin_fold
PPP2R1B	5519	genome.wustl.edu	37	11	111618707	111618707	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_181699.2	-1	reviewed	p.S457F	1.000	251	0%	335	42.4%	8	50%	possibly_damaging(0.657)	deleterious(0.01)	deleterious(0.637)	HMMPfam_HEAT,superfamily_ARM-type_fold
PPP2R1B	5519	genome.wustl.edu	37	11	111631718	111631718	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_181699.2	-1	reviewed	p.E122*	1.000	60	0%	106	41.5%	9	11.1%	-	-	-	HMMPfam_HEAT,superfamily_ARM-type_fold
C11orf1	64776	genome.wustl.edu	37	11	111753196	111753196	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_022761.2	+1	validated	p.F50L	1.000	119	0%	139	47.5%	27	70.3%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_DUF1143
C11orf57	55216	genome.wustl.edu	37	11	111951190	111951190	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001082969.1	+1	validated	p.K76N	0.998	199	0%	240	47.5%	4	75%	probably_damaging(0.962)	tolerated(0.32)	neutral(0.429)	NULL
TIMM8B	26521	genome.wustl.edu	37	11	111957367	111957367	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000509359	-1	known	p.T35A	0.980	18	0%	19	47.4%	197	23.3%	-	-	-	NULL
BCO2	83875	genome.wustl.edu	37	11	112046374	112046374	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_031938.4	+1	validated	p.A17G	0.001	266	0%	317	12%	0	-	probably_damaging(0.965)	deleterious(0)	deleterious(0.851)	NULL
TTC12	54970	genome.wustl.edu	37	11	113211391	113211391	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017868.3	+1	validated	p.E278K	1.000	258	0%	309	39.8%	12	33.3%	possibly_damaging(0.916)	tolerated(0.35)	neutral(0.388)	superfamily_ARM-type_fold
USP28	57646	genome.wustl.edu	37	11	113683225	113683225	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020886.2	-1	validated	p.V582A	1.000	150	0%	204	28.4%	21	19%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_UCH,superfamily_Cysteine proteinases
USP28	57646	genome.wustl.edu	37	11	113701595	113701595	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020886.2	-1	validated	p.R302C	1.000	423	0%	477	41.5%	6	33.3%	possibly_damaging(0.732)	tolerated(0.17)	neutral(0.327)	HMMPfam_UCH,superfamily_Cysteine proteinases
USP28	57646	genome.wustl.edu	37	11	113704272	113704272	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020886.2	-1	validated	p.R210I	1.000	184	0%	194	27.3%	2	0%	probably_damaging(0.994)	deleterious(0.03)	deleterious(0.817)	HMMPfam_UCH,superfamily_Cysteine proteinases
HTR3A	3359	genome.wustl.edu	37	11	113857672	113857672	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_213621.3	+1	reviewed	p.L380M	0.994	34	0%	52	48.1%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
FAM55D	54827	genome.wustl.edu	37	11	114441878	114441878	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001077639.1	-1	validated	p.K473E	0.995	240	0%	309	36.9%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
FAM55B	120406	genome.wustl.edu	37	11	114577232	114577232	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_182495.5	+1	validated	p.K420N	0.000	145	0%	181	45.9%	0	-	benign(0)	tolerated(0.34)	neutral(0.023)	NULL
SIK3	23387	genome.wustl.edu	37	11	116730253	116730253	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000445177	-1	known	p.E825K	0.916	87	0%	149	36.2%	94	43.6%	-	-	-	NULL
TAGLN	6876	genome.wustl.edu	37	11	117074164	117074164	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001001522.1	+1	reviewed	p.K108E	1.000	98	0%	135	25.2%	137	5.1%	benign(0.341)	tolerated(0.76)	neutral(0.108)	HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain
PCSK7	9159	genome.wustl.edu	37	11	117079644	117079644	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004716.2	-1	reviewed	p.S554P	1.000	68	0%	95	14.7%	78	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_P_proprotein,superfamily_Gal_bind_like
CEP164	22897	genome.wustl.edu	37	11	117222579	117222579	+	Missense_Mutation	SNP	G	G	A	rs148916200	by1000genomes	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014956.4	+1	validated	p.E90K	1.000	208	0%	255	43.5%	14	28.5%	possibly_damaging(0.456)	deleterious(0)	deleterious(0.594)	superfamily_WW domain
DSCAML1	57453	genome.wustl.edu	37	11	117321344	117321344	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020693.2	-1	provisional	p.S1270Y	1.000	47	0%	69	37.7%	0	-	possibly_damaging(0.716)	deleterious(0)	deleterious(0.704)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
TMPRSS13	84000	genome.wustl.edu	37	11	117774697	117774697	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001077263.1	-1	validated	p.R501C	0.001	70	0%	104	47.1%	12	58.3%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
TMPRSS13	84000	genome.wustl.edu	37	11	117782544	117782544	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001077263.1	-1	validated	p.D281N	0.007	133	0%	132	46.2%	7	57.1%	benign(0.019)	tolerated(0.08)	neutral(0.301)	HMMSmart_SM00202,superfamily_SRCR-like
IL10RA	3587	genome.wustl.edu	37	11	117870143	117870143	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001558.3	+1	reviewed	p.S508	0.000	36	0%	52	50%	1	0%	-	-	-	NULL
TMPRSS4	56649	genome.wustl.edu	37	11	117985926	117985926	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_019894.3	+1	reviewed	p.A361	0.001	81	0%	123	13%	314	5%	-	-	-	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
MPZL2	10205	genome.wustl.edu	37	11	118128024	118128024	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005797.3	-1	reviewed	p.E197*	1.000	218	0%	314	41.1%	25	28%	-	-	-	NULL
UBE4A	9354	genome.wustl.edu	37	11	118250338	118250338	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004788.2	+1	reviewed	p.N590	1.000	204	0%	228	51.8%	31	41.9%	-	-	-	HMMPfam_Ufd2P_core
MLL	4297	genome.wustl.edu	37	11	118374928	118374928	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005933.2	+1	validated	p.S2771Y	0.500	104	0%	107	11.2%	5	0%	benign(0.118)	-	-	NULL
DDX6	1656	genome.wustl.edu	37	11	118626210	118626210	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004397.4	-1	reviewed	p.L393M	1.000	91	0%	113	36.3%	41	39%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Helicase_C,HMMSmart_HELICc,superfamily_SSF52540
BCL9L	283149	genome.wustl.edu	37	11	118772891	118772891	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_182557.2	-1	validated	p.R521C	1.000	60	0%	66	37.9%	19	42.1%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
BCL9L	283149	genome.wustl.edu	37	11	118774022	118774022	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_182557.2	-1	validated	p.G224	0.283	4	0.000	16	0.562	1	100%	-	-	-	NULL
HYOU1	10525	genome.wustl.edu	37	11	118916313	118916313	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001130991.1	-1	reviewed	p.E998K	1.000	145	0%	145	46.2%	104	53.8%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
VPS11	55823	genome.wustl.edu	37	11	118949082	118949082	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000443691	+1	known	p.S292L	0.000	45	0%	62	51.6%	2	50%	-	-	-	NULL
C2CD2L	9854	genome.wustl.edu	37	11	118984984	118984984	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014807.3	+1	validated	p.S607	0.315	109	0%	145	49%	20	65%	-	-	-	NULL
CCDC153	283152	genome.wustl.edu	37	11	119064502	119064502	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001145018.1	-1	validated	p.R77Q	0.027	304	0%	339	49%	1	100%	benign(0.037)	tolerated(0.74)	neutral(0.004)	NULL
CCDC153	283152	genome.wustl.edu	37	11	119066179	119066179	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001145018.1	-1	validated	p.E7*	0.268	635	0%	767	40.3%	0	-	-	-	-	NULL
CBL	867	genome.wustl.edu	37	11	119145620	119145620	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005188.2	+1	reviewed	p.E276K	1.000	218	0%	241	38.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cbl_N3,superfamily_SSF55550
GRIK4	2900	genome.wustl.edu	37	11	120852858	120852858	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014619.2	+1	reviewed	p.I813	1.000	663	0.2%	737	47.9%	0	-	-	-	-	HMMPfam_Lig_chan
TECTA	7007	genome.wustl.edu	37	11	120989266	120989266	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005422.2	+1	reviewed	p.L348	0.981	85	0%	111	41.4%	1	100%	-	-	-	HMMPfam_VWD,HMMSmart_SM00216,HMMSmart_SM00215
SORL1	6653	genome.wustl.edu	37	11	121393638	121393638	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003105.4	+1	reviewed	p.K512N	1.000	172	0%	200	49%	16	31.2%	possibly_damaging(0.909)	tolerated(0.08)	deleterious(0.662)	HMMSmart_SM00602,superfamily_Oligoxyloglucan reducing end-specific cellobiohydrolase
SORL1	6653	genome.wustl.edu	37	11	121491837	121491837	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003105.4	+1	reviewed	p.R1985H	0.999	215	0%	262	45%	11	36.3%	probably_damaging(0.976)	tolerated(0.07)	deleterious(0.737)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
SORL1	6653	genome.wustl.edu	37	11	121498379	121498379	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003105.4	+1	reviewed	p.T2160	0.024	57	1.8%	94	43.6%	38	55.2%	-	-	-	NULL
UBASH3B	84959	genome.wustl.edu	37	11	122653904	122653904	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032873.4	+1	validated	p.R249W	1.000	312	0%	389	48.6%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
C11orf63	79864	genome.wustl.edu	37	11	122805249	122805249	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024806.2	+1	validated	p.R367Q	0.000	111	0%	148	39.2%	4	75%	possibly_damaging(0.819)	deleterious(0)	deleterious(0.754)	NULL
CLMP	79827	genome.wustl.edu	37	11	122944391	122944391	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024769.2	-1	validated	p.R305C	1.000	157	0%	159	50.3%	3	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
TMEM225	338661	genome.wustl.edu	37	11	123755959	123755959	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001013743.1	-1	provisional	p.W58*	0.999	111	0%	152	42.8%	0	-	-	-	-	NULL
OR8D4	338662	genome.wustl.edu	37	11	123777178	123777178	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001005197.1	+1	provisional	p.L14I	0.818	168	0%	190	41.1%	0	-	benign(0.068)	deleterious(0.01)	neutral(0.410)	superfamily_SSF81321
OR6T1	219874	genome.wustl.edu	37	11	123814475	123814475	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001005187.1	-1	provisional	p.Q24P	0.002	60	0%	92	35.9%	0	-	possibly_damaging(0.768)	deleterious(0)	deleterious(0.730)	superfamily_SSF81321
OR10G4	390264	genome.wustl.edu	37	11	123887031	123887031	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001004462.1	+1	provisional	p.F250	0.022	271	0%	339	49.9%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR8G5	219865	genome.wustl.edu	37	11	124135562	124135562	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001005198.1	+1	provisional	p.I280	0.000	303	0%	339	48.4%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR8D2	283160	genome.wustl.edu	37	11	124189609	124189609	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001002918.1	-1	provisional	p.R162H	0.001	106	0%	117	41.9%	0	-	benign(0.001)	tolerated(0.18)	neutral(0.056)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR8B8	26493	genome.wustl.edu	37	11	124310774	124310774	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012378.1	-1	provisional	p.D70Y	0.999	288	0%	368	41.3%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
CCDC15	80071	genome.wustl.edu	37	11	124857438	124857438	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_025004.2	+1	validated	p.S439N	0.051	182	0%	214	39.7%	1	0%	benign(0)	tolerated(0.86)	neutral(0.001)	NULL
SLC37A2	219855	genome.wustl.edu	37	11	124953755	124953755	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_198277.2	+1	validated	p.D341N	1.000	150	0%	236	37.3%	2	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
FEZ1	9638	genome.wustl.edu	37	11	125359533	125359533	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005103.3	-1	reviewed	p.E47D	1.000	154	0%	158	47.5%	0	-	possibly_damaging(0.556)	tolerated(0.21)	neutral(0.233)	NULL
HYLS1	219844	genome.wustl.edu	37	11	125770101	125770101	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001134793.1	+1	reviewed	p.R280C	1.000	161	0%	208	44.7%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CDON	50937	genome.wustl.edu	37	11	125889547	125889547	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016952.4	-1	validated	p.K155E	0.999	241	0%	284	47.9%	1	0%	possibly_damaging(0.918)	deleterious(0.05)	deleterious(0.714)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
DCPS	28960	genome.wustl.edu	37	11	126208231	126208231	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014026.3	+1	validated	p.F191	0.909	216	0%	278	45%	64	31.2%	-	-	-	HMMPfam_DcpS,superfamily_His_triad-like_motif
KIRREL3	84623	genome.wustl.edu	37	11	126333134	126333134	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032531.3	-1	reviewed	p.E220D	0.985	139	0%	200	12.5%	0	-	benign(0.022)	tolerated(1)	neutral(0.001)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_C2-set_2,superfamily_Immunoglobulin
FLI1	2313	genome.wustl.edu	37	11	128638109	128638109	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002017.3	+1	validated	p.K109N	1.000	215	0%	284	41.5%	11	0%	benign(0.039)	deleterious(0.04)	neutral(0.351)	superfamily_SAM/Pointed domain
KCNJ1	3758	genome.wustl.edu	37	11	128709937	128709937	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000220.2	-1	reviewed	p.A87S	0.975	127	0%	149	51%	0	-	benign(0.03)	tolerated(1)	neutral(0.002)	HMMPfam_IRK,superfamily_Voltage-gated potassium channels
KCNJ5	3762	genome.wustl.edu	37	11	128781855	128781855	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000890.3	+1	reviewed	p.I229	0.930	103	0%	123	38.2%	1	0%	-	-	-	HMMPfam_IRK,superfamily_Ig_E-set
ARHGAP32	9743	genome.wustl.edu	37	11	128840199	128840199	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001142685.1	-1	validated	p.Y1623H	1.000	223	0%	286	28.3%	13	46.1%	probably_damaging(0.999)	tolerated(0.34)	deleterious(0.513)	NULL
NFRKB	4798	genome.wustl.edu	37	11	129745356	129745356	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006165.3	-1	validated	p.R609W	0.999	91	1.1%	124	50%	33	42.4%	unknown(0)	deleterious(0)	-	NULL
NFRKB	4798	genome.wustl.edu	37	11	129746668	129746668	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006165.3	-1	validated	p.E590D	0.986	46	0%	60	45%	40	52.5%	unknown(0)	tolerated(0.7)	-	NULL
NFRKB	4798	genome.wustl.edu	37	11	129751369	129751369	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006165.3	-1	validated	p.F476L	1.000	282	0%	319	38.6%	2	50%	unknown(0)	tolerated(0.3)	-	NULL
SNX19	399979	genome.wustl.edu	37	11	130779960	130779960	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014758.2	-1	validated	p.R663C	1.000	161	0%	183	43.2%	10	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
OPCML	4978	genome.wustl.edu	37	11	132307180	132307180	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002545.3	-1	reviewed	p.Y200	0.921	129	0%	153	43.1%	0	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
IGSF9B	22997	genome.wustl.edu	37	11	133790149	133790149	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014987.1	-1	validated	p.A1157	0.999	15	0%	29	31%	0	-	-	-	-	NULL
IGSF9B	22997	genome.wustl.edu	37	11	133790490	133790490	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014987.1	-1	validated	p.E1044*	1.000	38	0%	36	52.8%	0	-	-	-	-	NULL
IGSF9B	22997	genome.wustl.edu	37	11	133805626	133805626	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014987.1	-1	validated	p.D285N	1.000	20	0%	27	66.7%	0	-	probably_damaging(0.958)	deleterious(0)	deleterious(0.846)	HMMSmart_IGc2,HMMSmart_FN3,HMMPfam_I-set,superfamily_SSF48726
IGSF9B	22997	genome.wustl.edu	37	11	133807762	133807762	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014987.1	-1	validated	p.K168	1.000	158	0%	233	41.2%	0	-	-	-	-	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726
JAM3	83700	genome.wustl.edu	37	11	134014230	134014230	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032801.3	+1	reviewed	p.V162	0.505	145	0%	207	46.9%	6	0%	-	-	-	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
GLB1L3	112937	genome.wustl.edu	37	11	134179751	134179751	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000425777	+1	known	p.S161Y	0.000	50	0%	55	56.4%	0	-	-	-	-	NULL
SLC6A12	6539	genome.wustl.edu	37	12	313749	313749	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001122847.1	-1	validated	p.K110N	1.000	39	0%	61	29.5%	0	-	probably_damaging(0.998)	tolerated(0.19)	deleterious(0.524)	HMMPfam_SNF
ERC1	23085	genome.wustl.edu	37	12	1289744	1289744	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_178040.2	+1	reviewed	p.K592N	1.000	198	0.5%	241	17%	11	18.1%	probably_damaging(1)	tolerated(0.17)	deleterious(0.559)	superfamily_Prefoldin,HMMPfam_Cast
CACNA2D4	93589	genome.wustl.edu	37	12	1965272	1965272	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_172364.4	-1	reviewed	p.I686	1.000	56	0%	76	35.5%	0	-	-	-	-	NULL
CACNA2D4	93589	genome.wustl.edu	37	12	1969368	1969368	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_172364.4	-1	reviewed	p.R628Q	1.000	108	0%	139	42.4%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CACNA2D4	93589	genome.wustl.edu	37	12	2019087	2019087	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_172364.4	-1	reviewed	p.F157L	1.000	76	0%	150	48%	0	-	benign(0.091)	tolerated(0.68)	neutral(0.009)	HMMPfam_VWA_N
CACNA2D4	93589	genome.wustl.edu	37	12	2022201	2022201	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_172364.4	-1	reviewed	p.V138	0.818	160	0%	269	40.1%	0	-	-	-	-	NULL
CACNA1C	775	genome.wustl.edu	37	12	2602492	2602492	+	Silent	SNP	C	C	T	rs182805644	by1000genomes	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_199460.2	+1	reviewed	p.F351	1.000	68	0%	118	12.7%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CACNA1C	775	genome.wustl.edu	37	12	2711054	2711054	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_199460.2	+1	reviewed	p.S983Y	1.000	271	0%	396	41.9%	1	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CACNA1C	775	genome.wustl.edu	37	12	2800120	2800120	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_199460.2	+1	reviewed	p.V2141I	1.000	25	0%	37	40.5%	1	0%	benign(0.051)	tolerated(0.08)	neutral(0.303)	NULL
CACNA1C	775	genome.wustl.edu	37	12	2800306	2800306	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_199460.2	+1	reviewed	p.R2203W	0.042	33	0%	31	41.9%	0	-	benign(0.014)	deleterious(0.03)	neutral(0.365)	NULL
FKBP4	2288	genome.wustl.edu	37	12	2909216	2909216	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002014.3	+1	reviewed	p.S258	0.683	160	0%	163	29.4%	55	40%	-	-	-	superfamily_SSF48452
FOXM1	2305	genome.wustl.edu	37	12	2973904	2973904	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_202002.1	-1	validated	p.P345	0.105	369	0.3%	515	15.7%	41	17%	-	-	-	NULL
TEAD4	7004	genome.wustl.edu	37	12	3131073	3131073	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003213.2	+1	reviewed	p.E263K	1.000	117	0%	131	32.1%	19	26.3%	possibly_damaging(0.909)	deleterious(0)	deleterious(0.806)	HMMPfam_TEA
EFCAB4B	84766	genome.wustl.edu	37	12	3763380	3763380	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001144958.1	-1	validated	p.E348	1.000	66	0%	83	32.5%	0	-	-	-	-	NULL
EFCAB4B	84766	genome.wustl.edu	37	12	3768821	3768821	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001144958.1	-1	validated	e5-1	1.000	288	0%	352	42.9%	0	-	-	-	-	-
EFCAB4B	84766	genome.wustl.edu	37	12	3788124	3788124	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001144958.1	-1	validated	p.R161W	0.998	223	0%	273	47.3%	0	-	benign(0.314)	tolerated(0.19)	neutral(0.148)	NULL
PARP11	57097	genome.wustl.edu	37	12	3931093	3931093	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020367.4	-1	validated	p.R165Q	1.000	177	0%	215	39.1%	1	0%	benign(0.076)	tolerated(0.44)	neutral(0.018)	HMMPfam_PARP,superfamily_ADP-ribosylation
ENSG00000118976	0	genome.wustl.edu	37	12	3949396	3949396	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000237841	+1	known	p.S310Y	0.968	290	0%	337	46.3%	0	-	-	-	-	NULL
CCND2	894	genome.wustl.edu	37	12	4398007	4398007	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001759.3	+1	validated	e4-1	1.000	100	0%	115	40%	0	-	-	-	-	-
C12orf4	57102	genome.wustl.edu	37	12	4626274	4626274	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020374.2	-1	predicted	p.V372A	1.000	280	0%	375	45.1%	1	100%	benign(0.008)	tolerated(0.28)	neutral(0.032)	HMMPfam_DUF2362
C12orf4	57102	genome.wustl.edu	37	12	4627349	4627349	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020374.2	-1	predicted	p.R303I	1.000	212	0%	282	39.7%	0	-	possibly_damaging(0.918)	tolerated(0.39)	neutral(0.385)	HMMPfam_DUF2362
DYRK4	8798	genome.wustl.edu	37	12	4702175	4702175	+	Silent	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003845.1	+1	provisional	p.L42	0.999	85	0%	122	48.4%	0	-	-	-	-	NULL
AKAP3	10566	genome.wustl.edu	37	12	4737649	4737649	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006422.2	-1	reviewed	p.R140H	1.000	231	0%	298	42.6%	0	-	probably_damaging(0.997)	tolerated(0.21)	deleterious(0.510)	HMMPfam_RII_binding_1,HMMSmart_SM00807
KCNA6	3742	genome.wustl.edu	37	12	4920395	4920395	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002235.3	+1	reviewed	p.F396	0.997	167	0.6%	227	45.8%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_SSF81324
LOC390282	390282	genome.wustl.edu	37	12	5141820	5141820	+	Silent	SNP	G	G	A	rs191378000	by1000genomes	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_372447.5	-1	model	p.F92	0.999	49	0%	66	47%	0	-	-	-	-	NULL
LOC390282	390282	genome.wustl.edu	37	12	5141938	5141938	+	Missense_Mutation	SNP	C	C	A	rs138419600	by1000genomes	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_372447.5	-1	model	p.R53L	1.000	33	0%	41	48.8%	1	0%	-	-	-	NULL
KCNA5	3741	genome.wustl.edu	37	12	5153733	5153733	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002234.2	+1	reviewed	p.Q140H	1.000	22	0%	24	50%	0	-	benign(0.153)	deleterious(0)	neutral(0.458)	HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_POZ domain
KCNA5	3741	genome.wustl.edu	37	12	5154117	5154117	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002234.2	+1	reviewed	p.C268*	0.955	56	0%	77	44.2%	0	-	-	-	-	superfamily_Voltage-gated potassium channels
KCNA5	3741	genome.wustl.edu	37	12	5155086	5155086	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002234.2	+1	reviewed	p.K591N	1.000	33	0%	24	54.2%	0	-	benign(0.006)	tolerated(0.07)	neutral(0.319)	NULL
VWF	7450	genome.wustl.edu	37	12	6167144	6167144	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000552.3	-1	reviewed	p.D534N	1.000	20	0%	15	46.7%	32	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_VWD,HMMSmart_SM00216
PLEKHG6	55200	genome.wustl.edu	37	12	6422910	6422910	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001144856.1	+1	validated	p.G85D	0.000	21	0%	40	47.5%	4	50%	benign(0)	deleterious(0.02)	neutral(0.383)	NULL
TNFRSF1A	7132	genome.wustl.edu	37	12	6442260	6442260	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001065.2	-1	reviewed	p.E176*	0.001	107	0%	183	12.6%	89	4.4%	-	-	-	HMMSmart_SM00208,PatternScan_EGF_2,superfamily_TNF receptor-like
LTBR	4055	genome.wustl.edu	37	12	6495603	6495603	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002342.1	+1	reviewed	p.E220D	0.895	113	0%	103	38.8%	170	42.9%	unknown(0)	tolerated(0.28)	-	NULL
NCAPD2	9918	genome.wustl.edu	37	12	6632016	6632016	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014865.3	+1	validated	p.F659L	1.000	523	0%	610	44.8%	38	39.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM repeat
ENSG00000247853	0	genome.wustl.edu	37	12	6691996	6691996	+	RNA	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000501075	+1	known	NULL	0.000	142	0%	176	42%	0	-	-	-	-	-
ENSG00000247853	0	genome.wustl.edu	37	12	6692690	6692690	+	RNA	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000501075	+1	known	NULL	0.001	26	0%	21	23.8%	0	-	-	-	-	-
CHD4	1108	genome.wustl.edu	37	12	6709723	6709723	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001273.2	-1	reviewed	p.R347Q	0.990	183	0%	213	42.3%	29	24.1%	benign(0.208)	tolerated(0.21)	neutral(0.064)	NULL
ACRBP	84519	genome.wustl.edu	37	12	6753672	6753672	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032489.2	-1	reviewed	p.A192V	0.000	305	0.3%	451	45.7%	2	50%	benign(0)	tolerated(0.09)	neutral(0.296)	HMMPfam_PBP_sp32
LEPREL2	10536	genome.wustl.edu	37	12	6939612	6939612	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000290510	+1	known	p.Q248H	0.134	45	0%	56	19.6%	4	0%	benign(0)	tolerated(0.09)	neutral(0.296)	NULL
CDCA3	83461	genome.wustl.edu	37	12	6959719	6959719	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_031299.4	-1	validated	p.Q54	0.001	144	0%	123	50.4%	20	50%	-	-	-	NULL
USP5	8078	genome.wustl.edu	37	12	6972513	6972513	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001098536.1	+1	validated	p.F642L	1.000	202	0%	246	16.3%	6	0%	benign(0)	tolerated(0.49)	neutral(0.011)	HMMPfam_UCH,superfamily_Cysteine proteinases
LRRC23	10233	genome.wustl.edu	37	12	7015636	7015636	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001135217.1	+1	validated	p.E100D	1.000	137	0%	199	47.7%	33	51.5%	benign(0.002)	tolerated(0.69)	neutral(0.002)	HMMPfam_LRR_1,superfamily_L domain-like
C1RL	51279	genome.wustl.edu	37	12	7260892	7260892	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016546.2	-1	validated	p.D85	0.998	73	0%	81	46.9%	19	26.3%	unknown(0)	-	-	HMMPfam_CUB,HMMSmart_CUB,superfamily_CUB
CLSTN3	9746	genome.wustl.edu	37	12	7303652	7303652	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014718.3	+1	validated	p.R840S	0.998	24	0%	46	45.7%	78	57.6%	benign(0.003)	tolerated(0.88)	-	NULL
CLSTN3	9746	genome.wustl.edu	37	12	7310654	7310654	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014718.3	+1	validated	p.E950K	0.994	64	0%	101	47.5%	96	40.6%	unknown(0)	tolerated(0.08)	-	NULL
ACSM4	341392	genome.wustl.edu	37	12	7470744	7470744	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001080454.1	+1	provisional	p.R296Q	0.906	265	0%	330	39.7%	0	-	benign(0)	tolerated(0.65)	neutral(0.003)	HMMPfam_AMP-binding,superfamily_SSF56801
CD163L1	283316	genome.wustl.edu	37	12	7527893	7527893	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_174941.4	-1	reviewed	p.V995	0.112	49	0%	73	45.2%	0	-	-	-	-	HMMPfam_SRCR,HMMSmart_SM00202,superfamily_SRCR-like
CD163L1	283316	genome.wustl.edu	37	12	7585244	7585244	+	Silent	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_174941.4	-1	reviewed	p.T178	0.258	190	0%	231	41.6%	0	-	-	-	-	HMMPfam_SRCR,PatternScan_SRCR_1,HMMSmart_SM00202,superfamily_SRCR-like
SLC2A14	144195	genome.wustl.edu	37	12	7982464	7982464	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_153449.2	-1	provisional	p.G160	0.800	181	0%	255	49%	0	-	-	-	-	HMMPfam_Sugar_tr,PatternScan_SUGAR_TRANSPORT_2,superfamily_MFS general substrate transporter
SLC2A14	144195	genome.wustl.edu	37	12	7984354	7984354	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_153449.2	-1	provisional	p.K63Q	0.001	145	0%	187	41.2%	0	-	benign(0.006)	tolerated(0.19)	neutral(0.050)	HMMPfam_Sugar_tr,superfamily_MFS general substrate transporter
SLC2A3	6515	genome.wustl.edu	37	12	8075621	8075621	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006931.2	-1	validated	e9-1	0.489	166	0%	181	39.8%	0	-	-	-	-	-
C3AR1	719	genome.wustl.edu	37	12	8212792	8212792	+	Splice_Site	SNP	C	C	A	rs11567804	byFrequency	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004054.2	-1	validated	e1-1	0.011	28	0%	30	46.7%	0	-	-	-	-	-
FAM90A1	55138	genome.wustl.edu	37	12	8376722	8376722	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018088.3	-1	validated	p.P71	0.000	133	0%	195	35.9%	0	-	-	-	-	NULL
A2ML1	144568	genome.wustl.edu	37	12	9020500	9020500	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_144670.3	+1	validated	p.E1260	0.035	179	0%	239	42.7%	9	55.5%	-	-	-	NULL
PZP	5858	genome.wustl.edu	37	12	9355190	9355190	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002864.2	-1	validated	p.L120M	0.002	170	0%	238	44.5%	11	45.4%	benign(0.146)	tolerated(0.17)	neutral(0.071)	HMMPfam_A2M_N
CLEC1A	51267	genome.wustl.edu	37	12	10224049	10224049	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016511.2	-1	reviewed	p.G242	0.386	218	0%	315	40.6%	1	0%	-	-	-	HMMPfam_Lectin_C,HMMSmart_CLECT,superfamily_C-type_lectin_fold
TAS2R7	50837	genome.wustl.edu	37	12	10954810	10954810	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_023919.2	-1	reviewed	p.L120	0.998	198	0%	218	36.2%	0	-	-	-	-	HMMPfam_TAS2R,superfamily_SSF81321
TAS2R50	259296	genome.wustl.edu	37	12	11139236	11139236	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_176890.2	-1	validated	p.F75C	0.002	105	0%	120	53.3%	0	-	possibly_damaging(0.492)	deleterious(0.01)	deleterious(0.570)	HMMPfam_TAS2R,superfamily_Family A G protein-coupled receptor-like
TAS2R19	259294	genome.wustl.edu	37	12	11174800	11174800	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_176888.1	-1	provisional	p.R124I	0.052	214	0%	287	15%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_TAS2R,superfamily_SSF81321
PRB3	5544	genome.wustl.edu	37	12	11421588	11421588	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000279573	-1	known	p.E27*	0.006	364	0%	458	42.6%	1	0%	-	-	-	NULL
PRB1	5542	genome.wustl.edu	37	12	11506213	11506213	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_199353.2	-1	reviewed	p.R142Q	0.084	812	0%	1087	31.7%	0	-	unknown(0)	tolerated(0.37)	-	NULL
MANSC1	54682	genome.wustl.edu	37	12	12496052	12496052	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018050.2	-1	validated	p.S66Y	0.001	350	0%	472	43.6%	22	45.4%	probably_damaging(0.979)	deleterious(0.01)	deleterious(0.828)	HMMPfam_MANEC,HMMSmart_MANEC
CDKN1B	1027	genome.wustl.edu	37	12	12871797	12871797	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004064.3	+1	reviewed	p.E172*	1.000	152	0.7%	170	45.9%	7	14.2%	-	-	-	NULL
GRIN2B	2904	genome.wustl.edu	37	12	13720128	13720128	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000834.3	-1	reviewed	p.S810I	1.000	157	0%	206	49%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Lig_chan
GRIN2B	2904	genome.wustl.edu	37	12	13768491	13768491	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000834.3	-1	reviewed	p.Y479C	1.000	252	0%	309	41.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_PBPe,HMMPfam_Lig_chan-Glu_bd,superfamily_SSF53850
ATF7IP	55729	genome.wustl.edu	37	12	14578392	14578392	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018179.3	+1	validated	p.E515*	0.578	39	0%	66	42.4%	9	0%	-	-	-	NULL
GUCY2C	2984	genome.wustl.edu	37	12	14766187	14766187	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004963.3	-1	validated	p.M1029T	1.000	349	0.3%	450	13.3%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
C12orf69	440087	genome.wustl.edu	37	12	14959262	14959262	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001013698.2	-1	validated	p.S118L	0.984	192	0%	266	45.1%	0	-	possibly_damaging(0.621)	deleterious(0)	deleterious(0.661)	NULL
C12orf69	440087	genome.wustl.edu	37	12	14959516	14959516	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001013698.2	-1	validated	p.F33	0.846	129	0%	164	50.6%	0	-	-	-	-	NULL
EPS8	2059	genome.wustl.edu	37	12	15774264	15774264	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004447.5	-1	reviewed	p.G819E	1.000	282	0%	346	37.9%	5	60%	possibly_damaging(0.767)	deleterious(0.01)	deleterious(0.690)	NULL
EPS8	2059	genome.wustl.edu	37	12	15774333	15774333	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004447.5	-1	reviewed	p.I796S	1.000	205	0.5%	192	42.7%	1	0%	possibly_damaging(0.821)	deleterious(0)	deleterious(0.755)	NULL
STRAP	11171	genome.wustl.edu	37	12	16036510	16036510	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007178.3	+1	validated	p.D50Y	1.000	208	0%	253	26.1%	56	23.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
SLC15A5	729025	genome.wustl.edu	37	12	16425679	16425679	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000344941	-1	known	p.D134Y	1.000	188	0%	218	50%	0	-	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	HMMPfam_PTR2
SLC15A5	729025	genome.wustl.edu	37	12	16430534	16430534	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000344941	-1	known	p.G29D	0.000	167	0%	236	50%	0	-	possibly_damaging(0.722)	deleterious(0)	deleterious(0.707)	NULL
PIK3C2G	5288	genome.wustl.edu	37	12	18650568	18650568	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004570.4	+1	reviewed	p.R927C	1.000	233	0%	341	43.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,superfamily_Protein kinase-like (PK-like),PatternScan_PI3_4_KINASE_1
ENSG00000248116	0	genome.wustl.edu	37	12	19460462	19460462	+	RNA	SNP	C	C	T	rs188679281	by1000genomes	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000510738	+1	novel	NULL	1.000	69	1.4%	81	44.4%	3	33.3%	-	-	-	-
PDE3A	5139	genome.wustl.edu	37	12	20799459	20799459	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000921.3	+1	validated	p.A763T	1.000	232	0%	332	40.4%	3	33.3%	possibly_damaging(0.842)	tolerated(0.23)	neutral(0.363)	HMMPfam_PDEase_I,HMMSmart_HDc,superfamily_SSF109604
PDE3A	5139	genome.wustl.edu	37	12	20799803	20799803	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000921.3	+1	validated	p.A828	0.040	150	0%	229	10.5%	7	0%	-	-	-	HMMPfam_PDEase_I,HMMSmart_HDc,superfamily_SSF109604
PDE3A	5139	genome.wustl.edu	37	12	20832992	20832992	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000921.3	+1	validated	p.I1071	1.000	89	0%	90	17.8%	1	0%	-	-	-	superfamily_SSF109604
LST-3TM12	338821	genome.wustl.edu	37	12	21172281	21172281	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001009562.4	+1	validated	p.I62S	0.993	604	0%	679	45.1%	0	-	possibly_damaging(0.494)	deleterious(0)	deleterious(0.609)	HMMPfam_OATP,superfamily_MFS general substrate transporter
LST-3TM12	338821	genome.wustl.edu	37	12	21200080	21200080	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001009562.4	+1	validated	p.S308Y	0.000	393	0%	520	44%	0	-	benign(0.003)	tolerated(0.9)	-	HMMPfam_OATP,superfamily_MFS general substrate transporter
SLCO1B1	10599	genome.wustl.edu	37	12	21331645	21331645	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006446.4	+1	reviewed	p.S206Y	0.996	182	0%	229	55.9%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_OATP,superfamily_MFS general substrate transporter
SLCO1B1	10599	genome.wustl.edu	37	12	21391991	21391991	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006446.4	+1	reviewed	p.K648N	0.998	132	0%	145	42.1%	0	-	benign(0.018)	deleterious(0.02)	neutral(0.384)	superfamily_MFS general substrate transporter
SLCO1A2	6579	genome.wustl.edu	37	12	21446942	21446942	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021094.3	-1	reviewed	p.G458	0.739	200	0%	279	39.1%	7	57.1%	-	-	-	HMMPfam_OATP,HMMPfam_Kazal_2,superfamily_MFS general substrate transporter,superfamily_Kazal-type serine protease inhibitors
PYROXD1	79912	genome.wustl.edu	37	12	21614992	21614992	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024854.3	+1	validated	p.D311N	1.000	268	0%	292	13.7%	12	16.6%	possibly_damaging(0.509)	tolerated(0.08)	deleterious(0.471)	HMMPfam_Pyr_redox_2,superfamily_SSF51905
RECQL	5965	genome.wustl.edu	37	12	21623143	21623143	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002907.3	-1	reviewed	p.K645N	0.935	293	0%	344	35.8%	7	42.8%	possibly_damaging(0.659)	deleterious(0.04)	deleterious(0.582)	NULL
GOLT1B	51026	genome.wustl.edu	37	12	21659843	21659843	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016072.4	+1	validated	p.F17S	1.000	524	0.4%	560	16.4%	4	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ABCC9	10060	genome.wustl.edu	37	12	22059199	22059199	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005691.2	-1	reviewed	p.K493N	1.000	322	0%	399	41.9%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
ABCC9	10060	genome.wustl.edu	37	12	22068742	22068742	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005691.2	-1	reviewed	p.A226S	1.000	243	0%	311	44.4%	1	0%	benign(0.002)	deleterious(0.04)	neutral(0.349)	NULL
ABCC9	10060	genome.wustl.edu	37	12	22068772	22068772	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005691.2	-1	reviewed	p.L216I	1.000	204	0%	244	44.3%	1	0%	possibly_damaging(0.484)	deleterious(0.03)	deleterious(0.525)	NULL
ABCC9	10060	genome.wustl.edu	37	12	22086765	22086765	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005691.2	-1	reviewed	p.L79F	0.999	286	0%	338	41.4%	2	0%	probably_damaging(1)	tolerated(0.12)	deleterious(0.760)	NULL
KIAA0528	9847	genome.wustl.edu	37	12	22635491	22635491	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014802.1	-1	predicted	p.A579	0.997	187	0%	275	42.9%	12	50%	-	-	-	NULL
KIAA0528	9847	genome.wustl.edu	37	12	22659684	22659684	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014802.1	-1	predicted	p.A370T	1.000	128	0%	160	50.6%	11	36.3%	possibly_damaging(0.843)	tolerated(0.11)	deleterious(0.595)	NULL
ETNK1	55500	genome.wustl.edu	37	12	22796805	22796805	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018638.4	+1	reviewed	p.D178N	1.000	172	0%	250	17.2%	25	24%	probably_damaging(0.982)	deleterious(0.01)	deleterious(0.832)	HMMPfam_Choline_kinase,superfamily_Kinase_like
ETNK1	55500	genome.wustl.edu	37	12	22837877	22837877	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018638.4	+1	reviewed	p.V450M	0.984	318	0%	404	17.3%	2	50%	benign(0)	tolerated(0.5)	neutral(0.010)	NULL
BCAT1	586	genome.wustl.edu	37	12	25031487	25031487	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005504.6	-1	reviewed	p.R163C	1.000	192	0%	198	46%	3	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Aminotran_4,superfamily_Aminotrans_IV
BCAT1	586	genome.wustl.edu	37	12	25101865	25101865	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005504.6	-1	reviewed	p.M1T	0.974	43	0%	76	30.3%	0	-	benign(0.001)	deleterious(0.01)	neutral(0.406)	NULL
LRMP	4033	genome.wustl.edu	37	12	25259876	25259876	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006152.2	+1	reviewed	e16-1	1.000	150	0%	171	41.5%	0	-	-	-	-	-
CASC1	55259	genome.wustl.edu	37	12	25274828	25274828	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018272.3	-1	validated	p.E366D	0.894	163	0%	186	35.5%	2	0%	possibly_damaging(0.923)	tolerated(0.11)	deleterious(0.644)	NULL
CASC1	55259	genome.wustl.edu	37	12	25297469	25297469	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018272.3	-1	validated	p.E278*	0.006	391	0.3%	494	42.5%	1	0%	-	-	-	NULL
IFLTD1	160492	genome.wustl.edu	37	12	25679786	25679786	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001145728.1	-1	validated	p.L199F	0.944	229	0%	308	42.2%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_IF_tail,superfamily_Lamin A/C globular tail domain
ITPR2	3709	genome.wustl.edu	37	12	26755599	26755599	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002223.2	-1	validated	p.K1168I	1.000	421	0%	441	42%	2	100%	benign(0.034)	tolerated(0.11)	neutral(0.274)	NULL
TM7SF3	51768	genome.wustl.edu	37	12	27133580	27133580	+	Splice_Site	SNP	C	C	A	rs1184529		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016551.2	-1	validated	e8-1	1.000	158	0%	175	49.7%	0	-	-	-	-	-
ARNTL2	56938	genome.wustl.edu	37	12	27533181	27533181	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020183.3	+1	provisional	p.E110*	1.000	88	0%	106	49.1%	0	-	-	-	-	HMMPfam_HLH,superfamily_HLH helix-loop-helix DNA-binding domain
PPFIBP1	8496	genome.wustl.edu	37	12	27809632	27809632	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003622.2	+1	reviewed	p.M260I	1.000	187	0%	268	44.8%	0	-	benign(0.001)	tolerated(0.45)	neutral(0.012)	NULL
OVCH1	341350	genome.wustl.edu	37	12	29640678	29640678	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_183378.2	-1	validated	p.I280	0.984	133	0%	200	41.5%	0	-	-	-	-	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
IPO8	10526	genome.wustl.edu	37	12	30790048	30790048	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006390.2	-1	reviewed	p.D855Y	0.993	166	0%	246	45.5%	27	62.9%	possibly_damaging(0.652)	deleterious(0.03)	deleterious(0.594)	superfamily_ARM-type_fold
CAPRIN2	65981	genome.wustl.edu	37	12	30864509	30864509	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001002259.1	-1	validated	p.N936H	1.000	307	0%	437	44.4%	14	78.5%	benign(0)	-	-	NULL
CAPRIN2	65981	genome.wustl.edu	37	12	30869579	30869579	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001002259.1	-1	validated	p.R776Q	0.987	573	0%	724	43.1%	6	50%	probably_damaging(0.999)	tolerated(0.37)	deleterious(0.509)	NULL
CAPRIN2	65981	genome.wustl.edu	37	12	30881584	30881584	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001002259.1	-1	validated	p.D594Y	1.000	253	0%	305	18.7%	5	0%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	NULL
CAPRIN2	65981	genome.wustl.edu	37	12	30881758	30881758	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001002259.1	-1	validated	p.E536*	0.748	290	0%	427	10.5%	3	0%	-	-	-	NULL
AMN1	196394	genome.wustl.edu	37	12	31825168	31825168	+	RNA	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NR_004854.1	-1	validated	NULL	0.000	182	0%	223	47.5%	7	57.1%	-	-	-	-
C12orf35	55196	genome.wustl.edu	37	12	32137706	32137706	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018169.3	+1	validated	p.E1273*	0.048	83	0%	64	34.4%	4	25%	-	-	-	NULL
C12orf35	55196	genome.wustl.edu	37	12	32138188	32138188	+	Silent	SNP	G	G	A	rs184270661	by1000genomes	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018169.3	+1	validated	p.T1433	0.000	64	0%	106	47.2%	6	50%	-	-	-	NULL
KIF21A	55605	genome.wustl.edu	37	12	39750650	39750650	+	Nonsense_Mutation	SNP	C	C	A	rs143300316		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017641.3	-1	validated	p.E485*	1.000	265	0%	290	41.4%	2	0%	-	-	-	NULL
SLC2A13	114134	genome.wustl.edu	37	12	40223992	40223992	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_052885.3	-1	validated	p.F453C	1.000	216	0%	283	42.8%	2	0%	possibly_damaging(0.947)	deleterious(0)	deleterious(0.835)	HMMPfam_Sugar_tr,superfamily_MFS general substrate transporter
LRRK2	120892	genome.wustl.edu	37	12	40637447	40637447	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_198578.3	+1	reviewed	p.E268*	1.000	284	0%	384	39.6%	0	-	-	-	-	superfamily_ARM-type_fold
LRRK2	120892	genome.wustl.edu	37	12	40753150	40753150	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_198578.3	+1	reviewed	p.E2311G	1.000	236	0%	332	45.5%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_WD40_like
CNTN1	1272	genome.wustl.edu	37	12	41323765	41323765	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001843.2	+1	reviewed	p.V222M	1.000	159	0%	246	45.9%	10	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
ADAMTS20	80070	genome.wustl.edu	37	12	43925997	43925997	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_025003.3	-1	validated	p.T152M	1.000	243	0%	297	42.4%	0	-	benign(0.004)	tolerated(0.69)	neutral(0.002)	HMMPfam_Pep_M12B_propep
PUS7L	83448	genome.wustl.edu	37	12	44148406	44148406	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001098614.1	-1	validated	p.A215T	1.000	180	0%	196	44.9%	0	-	possibly_damaging(0.568)	tolerated(0.18)	neutral(0.251)	superfamily_PsdUridine_synth_cat_dom
TMEM117	84216	genome.wustl.edu	37	12	44693485	44693485	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032256.1	+1	provisional	p.S244Y	1.000	501	0%	647	42.8%	3	66.6%	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	NULL
NELL2	4753	genome.wustl.edu	37	12	45170903	45170903	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001145107.1	-1	reviewed	p.C278	0.999	355	0%	476	42.6%	0	-	-	-	-	superfamily_ConA_like_lec_gl
SLC38A4	55089	genome.wustl.edu	37	12	47172514	47172514	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001143824.1	-1	validated	p.D255N	0.911	109	0%	142	40.1%	0	-	benign(0)	tolerated(0.62)	neutral(0.004)	HMMPfam_Aa_trans
VDR	7421	genome.wustl.edu	37	12	48238555	48238555	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000376.2	-1	reviewed	p.E420K	1.000	62	0%	67	38.8%	17	41.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Hormone_recep,superfamily_Nuclear receptor ligand-binding domain
VDR	7421	genome.wustl.edu	37	12	48251023	48251023	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000376.2	-1	reviewed	p.R158C	0.387	151	0%	200	53%	7	42.8%	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	superfamily_Nuclear receptor ligand-binding domain
COL2A1	1280	genome.wustl.edu	37	12	48370697	48370697	+	Silent	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001844.4	-1	reviewed	p.P1111	0.997	27	0%	32	46.9%	0	-	-	-	-	HMMPfam_Collagen
COL2A1	1280	genome.wustl.edu	37	12	48376689	48376689	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001844.4	-1	reviewed	p.A712V	1.000	33	0%	24	66.7%	0	-	unknown(0)	tolerated(0.17)	-	HMMPfam_Collagen
COL2A1	1280	genome.wustl.edu	37	12	48393799	48393799	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001844.4	-1	reviewed	p.D65	1.000	89	0%	127	37%	0	-	-	-	-	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1
CCDC65	85478	genome.wustl.edu	37	12	49298132	49298132	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033124.4	+1	validated	p.E5*	1.000	66	0%	65	32.3%	0	-	-	-	-	NULL
DDN	23109	genome.wustl.edu	37	12	49391782	49391782	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015086.1	-1	validated	p.L293F	1.000	24	0%	20	65%	0	-	possibly_damaging(0.896)	deleterious(0)	deleterious(0.798)	NULL
MLL2	8085	genome.wustl.edu	37	12	49420433	49420433	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003482.3	-1	validated	p.R5106C	1.000	36	0%	39	51.3%	101	40.5%	unknown(0)	-	-	HMMSmart_SM00184,HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger
MLL2	8085	genome.wustl.edu	37	12	49421878	49421878	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003482.3	-1	validated	p.K4810T	1.000	93	0%	125	56%	20	70%	unknown(0)	-	-	NULL
MLL2	8085	genome.wustl.edu	37	12	49438613	49438613	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003482.3	-1	validated	p.L1626W	1.000	99	0%	145	47.6%	20	55%	unknown(0)	-	-	NULL
TUBA1A	7846	genome.wustl.edu	37	12	49579170	49579170	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006009.2	-1	reviewed	p.D327Y	1.000	107	0%	127	37%	2222	18.2%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C
SPATS2	65244	genome.wustl.edu	37	12	49878437	49878437	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_023071.3	+1	validated	p.E30D	1.000	356	0%	397	42.1%	20	40%	probably_damaging(0.971)	tolerated(0.15)	deleterious(0.654)	NULL
FMNL3	91010	genome.wustl.edu	37	12	50100889	50100889	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_175736.4	-1	validated	p.K25N	1.000	18	0%	35	20%	0	-	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	NULL
RACGAP1	29127	genome.wustl.edu	37	12	50387962	50387962	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001126103.1	-1	validated	p.E431*	1.000	205	0%	247	47.4%	11	9%	-	-	-	HMMPfam_RhoGAP,HMMSmart_RhoGAP,superfamily_Rho_GAP
RACGAP1	29127	genome.wustl.edu	37	12	50392941	50392941	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001126103.1	-1	validated	p.D288Y	1.000	155	0%	212	33%	22	72.7%	benign(0.045)	tolerated(0.27)	neutral(0.036)	HMMPfam_C1_1,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,superfamily_SSF57889
ASIC1	41	genome.wustl.edu	37	12	50453598	50453598	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020039.2	+1	reviewed	p.D140G	1.000	152	0%	194	40.2%	4	75%	benign(0.007)	tolerated(0.28)	neutral(0.032)	HMMPfam_ASC
FAM186A	121006	genome.wustl.edu	37	12	50725459	50725459	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001145475.1	-1	provisional	p.K2281R	0.044	295	0%	328	41.8%	0	-	benign(0.019)	tolerated(0.72)	neutral(0.003)	NULL
FAM186A	121006	genome.wustl.edu	37	12	50744583	50744583	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001145475.1	-1	provisional	p.S2011*	0.006	365	0%	419	41.1%	0	-	-	-	-	NULL
FAM186A	121006	genome.wustl.edu	37	12	50749610	50749610	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001145475.1	-1	provisional	p.I335M	0.000	327	0%	392	47.2%	0	-	possibly_damaging(0.678)	tolerated(0.1)	deleterious(0.528)	NULL
DIP2B	57609	genome.wustl.edu	37	12	51121544	51121544	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_173602.2	+1	validated	p.L1153F	1.000	278	0%	299	46.8%	32	46.8%	possibly_damaging(0.761)	deleterious(0.02)	deleterious(0.665)	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
DIP2B	57609	genome.wustl.edu	37	12	51128896	51128896	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_173602.2	+1	validated	p.L1362I	1.000	409	0%	425	40.9%	7	57.1%	possibly_damaging(0.731)	tolerated(0.18)	neutral(0.323)	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
TMPRSS12	283471	genome.wustl.edu	37	12	51279081	51279081	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_182559.2	+1	validated	p.E235D	0.000	360	0%	431	44.1%	0	-	benign(0.004)	tolerated(0.72)	neutral(0.002)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
TFCP2	7024	genome.wustl.edu	37	12	51493442	51493442	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005653.4	-1	reviewed	p.F424L	1.000	376	0%	494	39.5%	37	40.5%	benign(0)	tolerated(0.67)	neutral(0.003)	NULL
BIN2	51411	genome.wustl.edu	37	12	51696885	51696885	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016293.2	-1	validated	p.L68R	1.000	216	0%	319	21.6%	0	-	probably_damaging(0.98)	deleterious(0.04)	deleterious(0.773)	HMMPfam_BAR,HMMSmart_SM00721
SCN8A	6334	genome.wustl.edu	37	12	52080198	52080198	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014191.2	+1	reviewed	p.F148V	1.000	707	0%	827	43.5%	0	-	benign(0.386)	deleterious(0.02)	deleterious(0.506)	superfamily_Voltage-gated potassium channels
SCN8A	6334	genome.wustl.edu	37	12	52099358	52099358	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014191.2	+1	reviewed	p.E431A	1.000	323	0%	415	41.2%	0	-	probably_damaging(0.998)	tolerated(0.23)	deleterious(0.516)	NULL
ACVRL1	94	genome.wustl.edu	37	12	52307091	52307091	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000020.2	+1	reviewed	p.C90	0.535	9	0.000	14	0.357	12	0%	-	-	-	HMMPfam_Activin_recp,superfamily_SSF57302
NR4A1	3164	genome.wustl.edu	37	12	52448586	52448586	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002135.3	+1	reviewed	p.F158	0.134	25	0%	26	53.8%	11	45.4%	-	-	-	NULL
KRT80	144501	genome.wustl.edu	37	12	52579169	52579169	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_182507.2	-1	reviewed	p.R168Q	0.995	67	0%	77	32.5%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Filament
KRT83	3889	genome.wustl.edu	37	12	52713086	52713086	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002282.3	-1	reviewed	p.R149	0.977	143	0%	180	43.3%	0	-	-	-	-	HMMPfam_Filament
KRT75	9119	genome.wustl.edu	37	12	52822462	52822462	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004693.2	-1	reviewed	p.I367	0.446	316	0%	395	37.2%	1	0%	-	-	-	superfamily_Prefoldin,HMMPfam_Filament
KRT6C	286887	genome.wustl.edu	37	12	52863649	52863649	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_173086.4	-1	reviewed	p.A410D	1.000	149	0.7%	200	12.5%	12	0%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMPfam_Filament
KRT6A	3853	genome.wustl.edu	37	12	52882216	52882216	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005554.3	-1	reviewed	p.D440	1.000	150	0%	242	14.9%	949	0.3%	-	-	-	HMMPfam_Filament
KRT5	3852	genome.wustl.edu	37	12	52908953	52908953	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000424.3	-1	reviewed	p.L516I	0.000	30	0%	36	27.8%	862	4.7%	unknown(0)	tolerated(0.36)	-	NULL
KRT71	112802	genome.wustl.edu	37	12	52942506	52942506	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033448.2	-1	reviewed	p.F264L	1.000	151	0%	174	40.8%	1	0%	benign(0.006)	deleterious(0.04)	neutral(0.349)	HMMPfam_Filament
KRT72	140807	genome.wustl.edu	37	12	52992747	52992747	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_080747.2	-1	reviewed	p.G192	0.520	286	0%	388	17.3%	0	-	-	-	-	HMMPfam_Filament
KRT2	3849	genome.wustl.edu	37	12	53043707	53043707	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000423.2	-1	reviewed	p.T284	0.004	402	0%	547	42.4%	0	-	-	-	-	HMMPfam_Filament
KRT3	3850	genome.wustl.edu	37	12	53189183	53189183	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_057088.2	-1	reviewed	p.K215R	1.000	168	0%	219	32.9%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_Filament
KRT4	3851	genome.wustl.edu	37	12	53201588	53201588	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002272.2	-1	reviewed	p.D470Y	1.000	100	0%	160	18.8%	5	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Filament
KRT4	3851	genome.wustl.edu	37	12	53207919	53207919	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002272.2	-1	reviewed	p.R49Q	0.008	38	0%	34	50%	0	-	benign(0.004)	-	-	NULL
KRT8	3856	genome.wustl.edu	37	12	53291404	53291404	+	Splice_Site	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002273.3	-1	reviewed	e8-2	0.999	22	0%	22	31.8%	45	100%	-	-	-	-
SOAT2	8435	genome.wustl.edu	37	12	53512198	53512198	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003578.3	+1	reviewed	p.I281	1.000	428	0%	594	42.4%	0	-	-	-	-	HMMPfam_MBOAT
AAAS	8086	genome.wustl.edu	37	12	53708157	53708157	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015665.5	-1	reviewed	p.S205N	1.000	94	0%	148	41.2%	59	42.3%	possibly_damaging(0.929)	tolerated(0.17)	neutral(0.435)	HMMSmart_WD40,superfamily_WD40_like
SP1	6667	genome.wustl.edu	37	12	53777308	53777308	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_138473.2	+1	validated	p.M526T	1.000	100	0%	131	48.1%	80	42.5%	benign(0.016)	deleterious(0.05)	neutral(0.346)	NULL
HOXC10	3226	genome.wustl.edu	37	12	54379476	54379476	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017409.3	+1	reviewed	p.V145M	1.000	21	0%	28	39.3%	25	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
HOXC6	3223	genome.wustl.edu	37	12	54422654	54422654	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004503.3	+1	reviewed	p.K117Q	1.000	103	0%	96	31.2%	5	100%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
HOXC4	3221	genome.wustl.edu	37	12	54447756	54447756	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014620.4	+1	reviewed	p.F17S	1.000	74	0%	87	36.8%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
NCKAP1L	3071	genome.wustl.edu	37	12	54911615	54911615	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005337.4	+1	reviewed	p.L411	1.000	309	0%	398	45.2%	3	0%	-	-	-	HMMPfam_Nckap1
LACRT	90070	genome.wustl.edu	37	12	55026146	55026146	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033277.1	-1	reviewed	p.I44	0.000	306	0%	373	42.9%	0	-	-	-	-	NULL
DCD	117159	genome.wustl.edu	37	12	55038981	55038981	+	Missense_Mutation	SNP	C	C	T	rs190416576	by1000genomes	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_053283.2	-1	reviewed	p.E89K	0.000	473	0%	473	48%	0	-	unknown(0)	deleterious(0)	-	NULL
MUCL1	118430	genome.wustl.edu	37	12	55248940	55248940	+	Silent	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_058173.2	+1	validated	p.A33	0.016	213	0%	251	42.6%	3	66.6%	-	-	-	NULL
NEUROD4	58158	genome.wustl.edu	37	12	55420904	55420904	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021191.2	+1	validated	p.Q227H	0.943	176	0%	203	41.9%	0	-	benign(0.004)	tolerated(1)	-	NULL
OR10A7	121364	genome.wustl.edu	37	12	55614851	55614851	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001005280.1	+1	provisional	p.L15I	0.993	390	0%	507	45.8%	0	-	benign(0.001)	deleterious(0.04)	neutral(0.349)	superfamily_SSF81321
OR10P1	121130	genome.wustl.edu	37	12	56030718	56030718	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_206899.1	+1	provisional	p.L15M	0.001	93	0%	101	38.6%	0	-	probably_damaging(0.992)	tolerated(0.13)	deleterious(0.700)	superfamily_SSF81321
OR10P1	121130	genome.wustl.edu	37	12	56030801	56030801	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_206899.1	+1	provisional	p.N42	0.003	142	0%	158	27.2%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
CDK2	1017	genome.wustl.edu	37	12	56360893	56360893	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001798.3	+1	reviewed	p.K34T	1.000	286	0%	369	40.7%	17	70.5%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
RAB5B	5869	genome.wustl.edu	37	12	56385929	56385929	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002868.2	+1	validated	p.G194D	1.000	132	0%	157	48.4%	88	45.4%	-	-	-	HMMSmart_SM00176,superfamily_P-loop containing nucleoside triphosphate hydrolases
ESYT1	23344	genome.wustl.edu	37	12	56525064	56525064	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015292.2	+1	validated	p.K226N	1.000	399	0%	528	43.6%	61	44.2%	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	NULL
OBFC2B	79035	genome.wustl.edu	37	12	56620148	56620148	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024068.3	+1	validated	p.N127	0.618	184	0%	224	44.2%	49	40.8%	-	-	-	NULL
SLC39A5	283375	genome.wustl.edu	37	12	56628638	56628638	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001135195.1	+1	validated	p.F168V	1.000	33	0%	33	42.4%	1	0%	probably_damaging(0.978)	tolerated(0.45)	neutral(0.432)	NULL
ANKRD52	283373	genome.wustl.edu	37	12	56638929	56638929	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_173595.3	-1	validated	p.S817L	1.000	80	0%	96	38.5%	33	45.4%	benign(0)	tolerated(0.26)	neutral(0.034)	HMMSmart_ANK,superfamily_ANK
COQ10A	93058	genome.wustl.edu	37	12	56664023	56664023	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_144576.3	+1	validated	p.E222D	1.000	187	0%	241	12%	5	0%	benign(0.205)	tolerated(0.24)	neutral(0.057)	HMMPfam_Polyketide_cyc
STAT2	6773	genome.wustl.edu	37	12	56744888	56744888	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005419.3	-1	reviewed	p.R343Q	0.774	242	0.4%	273	50.9%	40	40%	benign(0.007)	deleterious(0.02)	neutral(0.383)	superfamily_p53-like transcription factors,HMMPfam_STAT_bind
SPRYD4	283377	genome.wustl.edu	37	12	56862935	56862935	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_207344.3	+1	validated	p.L66F	1.000	42	0%	54	11.1%	7	0%	probably_damaging(0.964)	tolerated(0.17)	neutral(0.465)	NULL
GLS2	27165	genome.wustl.edu	37	12	56867014	56867014	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_013267.2	-1	reviewed	p.R483W	1.000	212	0%	251	41.8%	3	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Ankyrin repeat
NACA	4666	genome.wustl.edu	37	12	57107325	57107325	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001113203.1	-1	validated	p.A1989V	1.000	184	0%	220	42.3%	593	48%	possibly_damaging(0.91)	tolerated(0.12)	deleterious(0.623)	HMMPfam_NAC
NACA	4666	genome.wustl.edu	37	12	57114044	57114044	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001113203.1	-1	validated	p.H424N	0.007	273	0%	254	40.9%	0	-	unknown(0)	deleterious(0)	-	NULL
TMEM194A	23306	genome.wustl.edu	37	12	57464566	57464566	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001130963.1	-1	validated	p.K121	0.989	182	0%	258	47.7%	0	-	-	-	-	NULL
LRP1	4035	genome.wustl.edu	37	12	57598989	57598989	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002332.2	+1	reviewed	p.F3764	0.765	60	0%	96	34.4%	177	26.5%	-	-	-	HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_LDL receptor-like module,HMMSmart_SM00181
STAC3	246329	genome.wustl.edu	37	12	57638000	57638000	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_145064.1	-1	provisional	p.I289	0.715	143	0%	181	11.6%	2	50%	unknown(0)	-	-	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain
STAC3	246329	genome.wustl.edu	37	12	57642824	57642824	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_145064.1	-1	provisional	p.L112F	1.000	240	0%	312	42.6%	4	100%	probably_damaging(0.999)	tolerated(0.07)	deleterious(0.809)	HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,superfamily_Cysteine-rich domain
GLI1	2735	genome.wustl.edu	37	12	57859650	57859650	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005269.2	+1	reviewed	p.T235I	1.000	63	0%	77	44.2%	4	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667
GLI1	2735	genome.wustl.edu	37	12	57865531	57865531	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005269.2	+1	reviewed	p.K1003T	0.981	70	0%	101	43.6%	5	0%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
MARS	4141	genome.wustl.edu	37	12	57908816	57908816	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004990.2	+1	reviewed	p.R727W	0.970	158	0%	193	47.2%	207	45.8%	possibly_damaging(0.526)	deleterious(0.02)	deleterious(0.560)	superfamily_tRNAsyn_1a_bind
DDIT3	1649	genome.wustl.edu	37	12	57910667	57910667	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004083.4	-1	validated	p.I145	0.972	208	0%	275	43.6%	36	47.2%	-	-	-	HMMSmart_SM00338,HMMPfam_bZIP_2
MBD6	114785	genome.wustl.edu	37	12	57922480	57922480	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_052897.3	+1	validated	p.R951H	1.000	352	0.3%	417	20.1%	36	11.1%	probably_damaging(0.995)	-	-	NULL
KIF5A	3798	genome.wustl.edu	37	12	57971496	57971496	+	Silent	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004984.2	+1	reviewed	p.T767	1.000	271	0%	305	47.9%	0	-	-	-	-	superfamily_Prefoldin
KIF5A	3798	genome.wustl.edu	37	12	57975344	57975344	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004984.2	+1	reviewed	p.D968Y	0.978	89	0%	152	44.7%	1	0%	possibly_damaging(0.934)	deleterious(0.02)	deleterious(0.763)	NULL
B4GALNT1	2583	genome.wustl.edu	37	12	58024268	58024268	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001478.3	-1	reviewed	p.V175A	0.867	195	0%	223	13.5%	0	-	benign(0.059)	tolerated(0.26)	neutral(0.038)	NULL
LOC100130776	100130776	genome.wustl.edu	37	12	58121970	58121970	+	RNA	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NR_027032.1	+1	validated	NULL	0.273	22	0%	24	54.2%	2	0%	-	-	-	-
AGAP2	116986	genome.wustl.edu	37	12	58123472	58123472	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001122772.1	-1	validated	p.K836T	1.000	103	0%	118	50%	3	0%	possibly_damaging(0.894)	deleterious(0.03)	deleterious(0.716)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
CYP27B1	1594	genome.wustl.edu	37	12	58157562	58157562	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000785.3	-1	reviewed	p.T415	0.931	100	0%	158	47.5%	2	0%	-	-	-	HMMPfam_p450,superfamily_Cytochrome P450
SLC16A7	9194	genome.wustl.edu	37	12	60168518	60168518	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004731.3	+1	provisional	p.G148*	1.000	137	0%	163	50.9%	0	-	-	-	-	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
FAM19A2	338811	genome.wustl.edu	37	12	62147453	62147453	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_178539.3	-1	reviewed	p.D112N	1.000	197	0%	252	43.3%	1	0%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	NULL
AVPR1A	552	genome.wustl.edu	37	12	63543665	63543665	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000706.3	-1	reviewed	p.P318S	0.005	28	0%	32	43.8%	2	0%	benign(0.003)	deleterious(0.02)	neutral(0.383)	HMMPfam_7tm_1,superfamily_SSF81321
DPY19L2	283417	genome.wustl.edu	37	12	64057572	64057572	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_173812.4	-1	validated	p.S139Y	0.978	159	0%	206	35.9%	0	-	benign(0.33)	deleterious(0.02)	deleterious(0.486)	HMMPfam_DUF2211
TMEM5	10329	genome.wustl.edu	37	12	64199180	64199180	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014254.1	+1	provisional	p.E304*	1.000	161	0%	240	47.1%	23	39.1%	-	-	-	NULL
HELB	92797	genome.wustl.edu	37	12	66717847	66717847	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033647.2	+1	reviewed	p.E794D	0.001	315	0.3%	380	39.7%	0	-	benign(0.001)	tolerated(1)	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
HELB	92797	genome.wustl.edu	37	12	66725379	66725379	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033647.2	+1	reviewed	p.R1039I	0.991	92	0%	112	42.9%	2	50%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
CAND1	55832	genome.wustl.edu	37	12	67699746	67699746	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018448.3	+1	validated	p.G766	0.996	156	0%	198	40.4%	33	42.4%	-	-	-	superfamily_ARM repeat
MDM1	56890	genome.wustl.edu	37	12	68696441	68696441	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017440.4	-1	reviewed	p.R644Q	0.800	249	0%	276	56.9%	4	50%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SLC35E3	55508	genome.wustl.edu	37	12	69145900	69145900	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018656.2	+1	validated	p.V201A	0.012	405	0%	463	44.7%	13	46.1%	unknown(0)	tolerated(0.73)	-	HMMPfam_TPT,superfamily_Multidrug resistance efflux transporter EmrE
MDM2	4193	genome.wustl.edu	37	12	69222705	69222705	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002392.3	+1	reviewed	p.S226	0.724	134	0%	192	40.6%	26	50%	-	-	-	superfamily_SWIB/MDM2 domain
CCT2	10576	genome.wustl.edu	37	12	69986847	69986847	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006431.2	+1	reviewed	p.R281H	1.000	239	0%	317	36.6%	55	45.4%	possibly_damaging(0.644)	deleterious(0)	deleterious(0.670)	HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like,superfamily_GroEL apical domain-like,superfamily_GroEL-intermediate domain like
KCNMB4	27345	genome.wustl.edu	37	12	70794107	70794107	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014505.4	+1	reviewed	p.Q152R	1.000	270	0%	344	48%	9	0%	benign(0.079)	deleterious(0)	neutral(0.450)	HMMPfam_CaKB
TMEM19	55266	genome.wustl.edu	37	12	72091248	72091248	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018279.3	+1	validated	p.E191*	1.000	168	0.6%	181	50.3%	2	50%	-	-	-	HMMPfam_DUF92
TRHDE	29953	genome.wustl.edu	37	12	72969145	72969145	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_013381.2	+1	reviewed	p.D703Y	1.000	289	0%	314	45.9%	0	-	possibly_damaging(0.819)	deleterious(0.01)	deleterious(0.715)	NULL
TRHDE	29953	genome.wustl.edu	37	12	72969300	72969300	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_013381.2	+1	reviewed	p.D722N	1.000	335	0%	396	42.9%	0	-	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	NULL
CAPS2	84698	genome.wustl.edu	37	12	75706672	75706672	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032606.3	-1	validated	p.K224N	1.000	238	0%	267	43.8%	0	-	-	-	-	NULL
GLIPR1L1	256710	genome.wustl.edu	37	12	75741428	75741428	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152779.2	+1	provisional	p.V149	0.997	414	0%	522	38.9%	0	-	-	-	-	HMMSmart_SCP,HMMPfam_SCP,superfamily_SCP-like_extracellular
GLIPR1	11010	genome.wustl.edu	37	12	75875824	75875824	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006851.2	+1	reviewed	p.R129W	0.000	108	0%	121	38.8%	8	12.5%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMSmart_SCP,HMMPfam_SCP,superfamily_SCP-like_extracellular
BBS10	79738	genome.wustl.edu	37	12	76741394	76741394	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024685.3	-1	reviewed	p.S124F	1.000	117	0%	130	40.8%	0	-	benign(0)	tolerated(0.32)	neutral(0.024)	superfamily_GroEL-ATPase
OSBPL8	114882	genome.wustl.edu	37	12	76749785	76749785	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020841.4	-1	reviewed	p.R852*	1.000	209	0%	191	47.6%	1	0%	-	-	-	NULL
E2F7	144455	genome.wustl.edu	37	12	77449744	77449744	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_203394.2	-1	validated	p.L87R	1.000	360	0%	421	27.6%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NAV3	89795	genome.wustl.edu	37	12	78225326	78225326	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014903.4	+1	validated	p.L29I	1.000	142	0%	147	15%	0	-	benign(0.311)	deleterious(0.03)	neutral(0.462)	superfamily_Calponin-homology domain CH-domain
NAV3	89795	genome.wustl.edu	37	12	78513504	78513504	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014903.4	+1	validated	p.S1176	0.109	137	0%	157	43.3%	0	-	-	-	-	NULL
NAV3	89795	genome.wustl.edu	37	12	78604235	78604235	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014903.4	+1	validated	p.D2344N	1.000	101	0%	128	44.5%	0	-	probably_damaging(0.995)	tolerated(0.16)	deleterious(0.517)	NULL
SYT1	6857	genome.wustl.edu	37	12	79747315	79747315	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001135805.1	+1	validated	p.R282C	1.000	307	0%	415	50.6%	4	0%	probably_damaging(1)	tolerated(0.56)	deleterious(0.506)	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
OTOGL	283310	genome.wustl.edu	37	12	80613659	80613659	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_002343203.1	+1	model	p.I42L	1.000	293	0%	347	41.8%	0	-	benign(0.002)	tolerated(0.8)	neutral(0.001)	NULL
OTOGL	283310	genome.wustl.edu	37	12	80735793	80735793	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000298820	+1	known	p.W139*	1.000	151	0%	185	35.1%	0	-	probably_damaging(0.971)	tolerated(0.38)	neutral(0.430)	NULL
OTOGL	283310	genome.wustl.edu	37	12	80771734	80771734	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_002343203.1	+1	model	p.R2220Q	0.999	159	0%	233	38.2%	0	-	probably_damaging(0.976)	tolerated(1)	neutral(0.418)	HMMSmart_SM00041
PTPRQ	374462	genome.wustl.edu	37	12	80935366	80935366	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000266688	+1	known	p.E1063K	0.534	137	0%	165	44.8%	0	-	benign(0.282)	tolerated(0.84)	neutral(0.087)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
PTPRQ	374462	genome.wustl.edu	37	12	81026019	81026019	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000266688	+1	known	p.L1912S	1.000	387	0%	517	43.7%	0	-	probably_damaging(1)	tolerated(0.26)	deleterious(0.534)	NULL
PTPRQ	374462	genome.wustl.edu	37	12	81067061	81067061	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001145026.1	+1	validated	p.E2089*	1.000	323	0%	373	38.3%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
PTPRQ	374462	genome.wustl.edu	37	12	81072411	81072411	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000266688	+1	known	p.L2257M	1.000	366	0%	504	44%	0	-	probably_damaging(0.977)	deleterious(0.01)	deleterious(0.825)	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
LIN7A	8825	genome.wustl.edu	37	12	81205450	81205450	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004664.2	-1	validated	p.E166*	1.000	189	0%	233	43.3%	0	-	-	-	-	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
PPFIA2	8499	genome.wustl.edu	37	12	81738459	81738459	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003625.2	-1	reviewed	p.R749M	1.000	199	0%	321	40.2%	0	-	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	NULL
LRRIQ1	84125	genome.wustl.edu	37	12	85450149	85450149	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001079910.1	+1	validated	p.P526	0.000	52	0%	56	53.6%	0	-	-	-	-	superfamily_RNI-like
LRRIQ1	84125	genome.wustl.edu	37	12	85492159	85492159	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001079910.1	+1	validated	p.Q972K	1.000	165	0%	212	10.4%	0	-	possibly_damaging(0.792)	tolerated(0.92)	neutral(0.297)	HMMSmart_SM00369,superfamily_RNI-like
LRRIQ1	84125	genome.wustl.edu	37	12	85492659	85492659	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001079910.1	+1	validated	p.E1032D	0.190	192	0%	301	44.5%	0	-	benign(0)	tolerated(0.44)	neutral(0.013)	HMMPfam_LRR_1,superfamily_RNI-like
LRRIQ1	84125	genome.wustl.edu	37	12	85517896	85517896	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001079910.1	+1	validated	p.K1202N	0.001	88	0%	131	45.8%	0	-	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	NULL
RASSF9	9182	genome.wustl.edu	37	12	86198722	86198722	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005447.3	-1	reviewed	p.E356*	1.000	149	0%	180	44.4%	0	-	-	-	-	NULL
RASSF9	9182	genome.wustl.edu	37	12	86199124	86199124	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005447.3	-1	reviewed	p.R222*	1.000	215	0%	266	43.6%	3	66.6%	-	-	-	NULL
RASSF9	9182	genome.wustl.edu	37	12	86199710	86199710	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005447.3	-1	reviewed	p.E26D	1.000	228	0%	285	43.2%	1	100%	probably_damaging(0.964)	tolerated(0.13)	deleterious(0.659)	HMMSmart_SM00314
C12orf50	160419	genome.wustl.edu	37	12	88391831	88391831	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152589.1	-1	predicted	p.E90D	0.965	389	0%	480	43.3%	0	-	possibly_damaging(0.477)	deleterious(0.04)	deleterious(0.506)	NULL
CEP290	80184	genome.wustl.edu	37	12	88465637	88465637	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_025114.3	-1	reviewed	p.R1926*	1.000	507	0%	593	36.8%	1	0%	-	-	-	NULL
CEP290	80184	genome.wustl.edu	37	12	88514815	88514815	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_025114.3	-1	reviewed	p.E440*	1.000	470	0%	598	43.6%	0	-	-	-	-	NULL
TMTC3	160418	genome.wustl.edu	37	12	88586539	88586539	+	Missense_Mutation	SNP	G	G	A	rs142095812	by1000genomes	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_181783.3	+1	reviewed	p.R622H	0.184	126	0%	160	24.4%	1	100%	benign(0)	tolerated(0.11)	neutral(0.272)	HMMPfam_TPR_1,HMMSmart_TPR,superfamily_Prenyl_trans
TMTC3	160418	genome.wustl.edu	37	12	88588832	88588832	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_181783.3	+1	reviewed	p.K717	0.997	195	0%	261	42.9%	3	33.3%	-	-	-	HMMSmart_TPR,superfamily_Prenyl_trans
KITLG	4254	genome.wustl.edu	37	12	88910238	88910238	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000899.3	-1	reviewed	p.E131	0.080	84	0%	92	32.6%	0	-	-	-	-	HMMPfam_SCF,superfamily_4-helical cytokines
ATP2B1	490	genome.wustl.edu	37	12	89985069	89985069	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001682.2	-1	reviewed	p.R1119*	1.000	106	0%	132	17.4%	10	10%	-	-	-	NULL
ATP2B1	490	genome.wustl.edu	37	12	90004246	90004246	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001682.2	-1	reviewed	p.R763*	1.000	290	0%	350	48%	14	0%	-	-	-	HMMPfam_Hydrolase,superfamily_SSF56784,superfamily_SSF81665
KERA	11081	genome.wustl.edu	37	12	91449875	91449875	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007035.3	-1	reviewed	p.G62C	1.000	207	0%	250	50.4%	0	-	probably_damaging(0.997)	deleterious(0.03)	deleterious(0.831)	HMMPfam_LRRNT,HMMSmart_LRRNT,superfamily_SSF52058
LUM	4060	genome.wustl.edu	37	12	91502008	91502008	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002345.3	-1	reviewed	p.S250Y	0.997	243	0%	324	44.4%	77	2.5%	possibly_damaging(0.492)	deleterious(0.04)	deleterious(0.513)	HMMPfam_LRR_1,superfamily_L domain-like
LUM	4060	genome.wustl.edu	37	12	91502344	91502344	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002345.3	-1	reviewed	p.S138Y	1.000	200	0.5%	252	40.9%	50	2%	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00364,HMMSmart_SM00365,superfamily_L domain-like
EEA1	8411	genome.wustl.edu	37	12	93219953	93219953	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003566.3	-1	validated	p.R505*	0.999	629	0%	750	43.2%	0	-	-	-	-	NULL
CCDC41	51134	genome.wustl.edu	37	12	94805517	94805517	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001042399.1	-1	validated	p.E94K	0.996	355	0%	438	45.9%	0	-	possibly_damaging(0.91)	tolerated(0.05)	deleterious(0.708)	NULL
RBMS2P1	643427	genome.wustl.edu	37	12	94817836	94817836	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000393113	-1	known	p.N264K	0.995	333	0%	397	40.8%	17	0%	-	-	-	NULL
NR2C1	7181	genome.wustl.edu	37	12	95451618	95451618	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003297.2	-1	reviewed	p.R194Q	1.000	166	0%	207	49.8%	11	54.5%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_Nuclear receptor ligand-binding domain,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
FGD6	55785	genome.wustl.edu	37	12	95478413	95478413	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018351.3	-1	validated	p.A1373T	1.000	131	0%	193	44%	3	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
FGD6	55785	genome.wustl.edu	37	12	95546703	95546703	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018351.3	-1	validated	p.V885M	1.000	431	0%	529	43.3%	3	33.3%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
NTN4	59277	genome.wustl.edu	37	12	96180927	96180927	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021229.3	-1	validated	p.F125L	1.000	149	0%	156	44.9%	24	37.5%	probably_damaging(0.984)	deleterious(0)	deleterious(0.875)	HMMPfam_Laminin_N,HMMSmart_SM00136
AMDHD1	144193	genome.wustl.edu	37	12	96354257	96354257	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152435.2	+1	validated	p.E223	0.639	216	0%	338	47.6%	0	-	-	-	-	superfamily_Composite domain of metallo-dependent hydrolases,superfamily_Metallo-dependent hydrolases
CDK17	5128	genome.wustl.edu	37	12	96691430	96691430	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002595.3	-1	reviewed	p.S262Y	1.000	252	0%	275	38.9%	11	27.2%	probably_damaging(0.986)	deleterious(0.02)	deleterious(0.818)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
CDK17	5128	genome.wustl.edu	37	12	96704846	96704846	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002595.3	-1	reviewed	p.S176F	1.000	176	0%	225	44.4%	3	33.3%	possibly_damaging(0.882)	tolerated(0.17)	neutral(0.403)	NULL
C12orf63	374467	genome.wustl.edu	37	12	97051746	97051746	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_198520.2	+1	validated	p.E154D	0.151	164	0%	213	41.3%	0	-	unknown(0)	deleterious(0)	-	NULL
C12orf63	374467	genome.wustl.edu	37	12	97087506	97087506	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_198520.2	+1	validated	p.P516S	1.000	365	0%	398	46.7%	0	-	unknown(0)	deleterious(0)	-	NULL
NEDD1	121441	genome.wustl.edu	37	12	97339486	97339486	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001135175.1	+1	validated	p.S564Y	0.998	144	0%	160	42.5%	6	66.6%	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	NULL
ENSG00000206899	0	genome.wustl.edu	37	12	98115595	98115595	+	RNA	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000384172	+1	known	NULL	0.031	21	0%	28	46.4%	1	0%	-	-	-	-
ENSG00000227825	0	genome.wustl.edu	37	12	98849655	98849655	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000370696	-1	known	p.E81D	1.000	130	0%	174	43.1%	0	-	-	-	-	HMMPfam_Na_H_Exchanger
TMPO	7112	genome.wustl.edu	37	12	98926914	98926914	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003276.2	+1	reviewed	p.S293	0.748	68	0%	108	49.1%	5	40%	-	-	-	NULL
TMPO	7112	genome.wustl.edu	37	12	98928089	98928089	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003276.2	+1	reviewed	p.K685T	0.986	113	0%	114	39.5%	9	66.6%	possibly_damaging(0.941)	deleterious(0)	deleterious(0.831)	NULL
IKBIP	121457	genome.wustl.edu	37	12	99020172	99020172	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_153687.2	-1	provisional	p.L224I	0.964	435	0%	514	45.9%	2	0%	probably_damaging(0.995)	tolerated(0.34)	deleterious(0.481)	NULL
APAF1	317	genome.wustl.edu	37	12	99052986	99052986	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_181861.1	+1	reviewed	p.K192T	1.000	323	0.3%	371	43.9%	1	0%	possibly_damaging(0.907)	tolerated(0.07)	deleterious(0.679)	HMMPfam_NB-ARC,superfamily_WD40 repeat-like,superfamily_P-loop containing nucleoside triphosphate hydrolases
ANKS1B	56899	genome.wustl.edu	37	12	99139600	99139600	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_181670.2	-1	validated	p.L484	1.000	109	0%	150	36%	1	100%	-	-	-	NULL
UHRF1BP1L	23074	genome.wustl.edu	37	12	100452257	100452257	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015054.1	-1	validated	p.S933Y	0.978	195	0%	190	38.9%	1	0%	probably_damaging(0.961)	tolerated(0.08)	deleterious(0.704)	NULL
UHRF1BP1L	23074	genome.wustl.edu	37	12	100453101	100453101	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015054.1	-1	validated	p.L652I	1.000	68	0%	73	35.6%	0	-	benign(0.157)	tolerated(0.43)	neutral(0.028)	NULL
GOLGA2P5	55592	genome.wustl.edu	37	12	100560225	100560225	+	RNA	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NR_024261.1	-1	validated	NULL	0.514	27	0%	40	40%	13	53.8%	-	-	-	-
ACTR6	64431	genome.wustl.edu	37	12	100601504	100601504	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_022496.3	+1	validated	p.E107*	1.000	160	0.6%	175	39.4%	1	0%	-	-	-	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
SCYL2	55681	genome.wustl.edu	37	12	100685328	100685328	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017988.4	+1	provisional	p.Q75H	1.000	106	0%	126	47.6%	1	100%	benign(0.364)	tolerated(0.08)	neutral(0.416)	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
SCYL2	55681	genome.wustl.edu	37	12	100717326	100717326	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017988.4	+1	provisional	p.P473	0.979	295	0%	350	42%	4	25%	-	-	-	superfamily_ARM repeat
ANO4	121601	genome.wustl.edu	37	12	101336168	101336168	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_178826.3	+1	validated	p.R69I	0.998	147	0%	218	40.8%	0	-	benign(0.013)	tolerated(0.06)	neutral(0.323)	NULL
ANO4	121601	genome.wustl.edu	37	12	101510550	101510550	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_178826.3	+1	validated	p.F813L	1.000	299	0.3%	370	51.9%	2	0%	benign(0.35)	tolerated(0.76)	neutral(0.112)	HMMPfam_DUF590
UTP20	27340	genome.wustl.edu	37	12	101713329	101713329	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014503.2	+1	validated	p.L915F	1.000	217	0%	216	47.7%	0	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	superfamily_ARM repeat
UTP20	27340	genome.wustl.edu	37	12	101739422	101739422	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014503.2	+1	validated	p.H1566N	1.000	167	0%	253	42.7%	4	75%	benign(0)	tolerated(1)	-	superfamily_ARM repeat
MYBPC1	4604	genome.wustl.edu	37	12	102067366	102067366	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002465.2	+1	validated	p.F925	0.000	98	0%	168	47.6%	0	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
GNPTAB	79158	genome.wustl.edu	37	12	102147186	102147186	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024312.4	-1	reviewed	p.R1189Q	1.000	203	0%	242	41.3%	20	20%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	NULL
CCDC53	51019	genome.wustl.edu	37	12	102439865	102439865	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016053.2	-1	validated	p.Q61H	1.000	206	0%	222	36.9%	4	50%	probably_damaging(0.98)	tolerated(0.06)	deleterious(0.746)	HMMPfam_DUF2360
PMCH	5367	genome.wustl.edu	37	12	102590479	102590479	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002674.2	-1	validated	p.M150T	1.000	94	0%	129	38.8%	5	40%	benign(0.176)	tolerated(0.06)	neutral(0.339)	HMMPfam_Pro-MCH
STAB2	55576	genome.wustl.edu	37	12	104151988	104151988	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000258495	+1	known	p.C994*	0.001	106	0%	139	38.8%	0	-	-	-	-	NULL
STAB2	55576	genome.wustl.edu	37	12	104156142	104156142	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017564.9	+1	reviewed	p.R2484W	1.000	203	0%	238	44.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
HSP90B1	7184	genome.wustl.edu	37	12	104332235	104332235	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003299.1	+1	provisional	p.K325Q	1.000	126	0%	209	42.6%	48	70.8%	probably_damaging(0.989)	deleterious(0.03)	deleterious(0.804)	superfamily_ATP_bd_ATPase,HMMPfam_HSP90
HSP90B1	7184	genome.wustl.edu	37	12	104336438	104336438	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003299.1	+1	provisional	p.R503Q	1.000	182	0%	212	37.3%	634	40%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	superfamily_Ribosomal_S5_D2-typ_fold,HMMPfam_HSP90
NFYB	4801	genome.wustl.edu	37	12	104519998	104519998	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006166.3	-1	reviewed	p.H42R	1.000	427	0%	462	44.6%	26	53.8%	benign(0.016)	tolerated(0.49)	neutral(0.011)	NULL
EID3	493861	genome.wustl.edu	37	12	104698483	104698483	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001008394.1	+1	provisional	p.E257D	1.000	135	0%	184	47.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Nse4
TXNRD1	7296	genome.wustl.edu	37	12	104725408	104725408	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000429002	+1	known	p.E551*	1.000	200	0%	209	35.4%	18	5.5%	-	-	-	HMMPfam_Pyr_redox_dim,superfamily_FAD/NAD-linked reductases dimerisation (C-terminal) domain
CHST11	50515	genome.wustl.edu	37	12	104995735	104995735	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018413.5	+1	validated	p.R57Q	0.921	131	0%	164	15.9%	2	0%	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	HMMPfam_Sulfotransfer_2
CHST11	50515	genome.wustl.edu	37	12	105150871	105150871	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018413.5	+1	validated	p.E117K	1.000	18	0%	24	66.7%	2	50%	benign(0.001)	tolerated(1)	-	HMMPfam_Sulfotransfer_2
CHST11	50515	genome.wustl.edu	37	12	105151548	105151548	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018413.5	+1	validated	p.N342K	1.000	57	0%	82	43.9%	1	0%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_Sulfotransfer_2
LOC100130905	100130905	genome.wustl.edu	37	12	106633450	106633450	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_001715433.1	+1	model	p.R170W	0.000	37	0%	38	47.4%	67	38.8%	-	-	-	NULL
TCP11L2	255394	genome.wustl.edu	37	12	106740246	106740246	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152772.1	+1	provisional	p.R500*	1.000	163	0%	186	41.9%	6	33.3%	-	-	-	HMMPfam_Tcp11
POLR3B	55703	genome.wustl.edu	37	12	106831541	106831541	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018082.5	+1	validated	p.E647K	1.000	243	0%	270	43%	5	20%	benign(0.019)	deleterious(0.03)	neutral(0.365)	HMMPfam_RNA_pol_Rpb2_5,superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase
RFX4	5992	genome.wustl.edu	37	12	107105244	107105244	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_213594.1	+1	reviewed	p.F316L	1.000	253	0%	357	42.6%	0	-	probably_damaging(0.971)	deleterious(0)	deleterious(0.857)	NULL
RFX4	5992	genome.wustl.edu	37	12	107144450	107144450	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_213594.1	+1	reviewed	p.N605S	1.000	117	0%	170	42.4%	0	-	probably_damaging(0.993)	tolerated(0.22)	deleterious(0.492)	NULL
CRY1	1407	genome.wustl.edu	37	12	107391371	107391371	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004075.3	-1	validated	p.G463R	1.000	265	0%	296	42.2%	7	28.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_FAD_binding_7,superfamily_Cryptochrome/photolyase FAD-binding domain
PWP1	11137	genome.wustl.edu	37	12	108098436	108098436	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007062.1	+1	provisional	p.R330Q	1.000	404	0%	548	44%	39	33.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_WD40 repeat-like
WSCD2	9671	genome.wustl.edu	37	12	108634209	108634209	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014653.2	+1	validated	p.F411	1.000	37	0%	57	33.3%	0	-	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
CMKLR1	1240	genome.wustl.edu	37	12	108685768	108685768	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001142343.1	-1	validated	p.K324N	1.000	153	0%	193	48.7%	3	0%	possibly_damaging(0.912)	deleterious(0)	deleterious(0.808)	superfamily_Family A G protein-coupled receptor-like
SART3	9733	genome.wustl.edu	37	12	108924048	108924048	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014706.3	-1	reviewed	p.E596*	1.000	359	0%	417	40%	6	0%	-	-	-	NULL
SELPLG	6404	genome.wustl.edu	37	12	109017100	109017100	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003006.3	-1	reviewed	p.A318	0.002	62	0%	86	41.9%	4	0%	-	-	-	NULL
SELPLG	6404	genome.wustl.edu	37	12	109017306	109017306	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003006.3	-1	reviewed	p.E250*	0.000	562	0%	683	47.1%	12	16.6%	-	-	-	NULL
SELPLG	6404	genome.wustl.edu	37	12	109017675	109017675	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000228463	-1	known	p.V137L	0.000	622	0%	751	48.3%	23	17.3%	unknown(0)	tolerated(0.36)	-	NULL
CORO1C	23603	genome.wustl.edu	37	12	109055854	109055854	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014325.2	-1	reviewed	p.V133	0.900	83	0%	114	42.1%	57	54.3%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
SSH1	54434	genome.wustl.edu	37	12	109182423	109182423	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018984.3	-1	validated	p.R831W	0.992	56	1.8%	68	47.1%	7	42.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SSH1	54434	genome.wustl.edu	37	12	109194668	109194668	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018984.3	-1	validated	p.D346N	1.000	164	0%	213	40.4%	2	0%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_DSPc,HMMSmart_SM00195,superfamily_(Phosphotyrosine protein) phosphatases II
USP30	84749	genome.wustl.edu	37	12	109509466	109509466	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032663.3	+1	validated	p.R177Q	1.000	142	0%	199	51.8%	11	45.4%	benign(0.077)	tolerated(0.58)	neutral(0.010)	HMMPfam_UCH,superfamily_SSF54001
USP30	84749	genome.wustl.edu	37	12	109523662	109523662	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032663.3	+1	validated	p.A494T	1.000	47	0%	90	14.4%	15	33.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_UCH,superfamily_SSF54001
ACACB	32	genome.wustl.edu	37	12	109577476	109577476	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001093.3	+1	reviewed	p.R89I	0.000	83	0%	87	29.9%	0	-	possibly_damaging(0.882)	deleterious(0)	deleterious(0.789)	NULL
MYO1H	283446	genome.wustl.edu	37	12	109839051	109839051	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001101421.3	+1	provisional	p.P226S	1.000	66	0%	97	47.4%	0	-	benign(0.088)	tolerated(0.35)	neutral(0.027)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
KCTD10	83892	genome.wustl.edu	37	12	109898592	109898592	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_031954.3	-1	provisional	p.R79H	1.000	87	0%	102	40.2%	30	43.3%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_POZ domain
UBE3B	89910	genome.wustl.edu	37	12	109928920	109928920	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_130466.2	+1	reviewed	p.S234Y	0.973	201	0%	262	42.7%	6	50%	benign(0.313)	deleterious(0)	deleterious(0.542)	NULL
UBE3B	89910	genome.wustl.edu	37	12	109940977	109940977	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_130466.2	+1	reviewed	p.R478W	1.000	103	0%	151	49.7%	10	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MVK	4598	genome.wustl.edu	37	12	110019209	110019209	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000431.2	+1	reviewed	p.P127	0.986	42	0%	59	35.6%	10	70%	-	-	-	superfamily_Ribosomal protein S5 domain 2-like
CCDC63	160762	genome.wustl.edu	37	12	111319065	111319065	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152591.1	+1	provisional	p.R273H	0.972	89	1.1%	137	48.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CUX2	23316	genome.wustl.edu	37	12	111747900	111747900	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015267.3	+1	validated	p.S438	1.000	57	0%	88	37.5%	3	33.3%	-	-	-	NULL
CUX2	23316	genome.wustl.edu	37	12	111749989	111749989	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015267.3	+1	validated	p.I662	0.986	89	0%	156	37.8%	1	100%	-	-	-	NULL
CUX2	23316	genome.wustl.edu	37	12	111785554	111785554	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015267.3	+1	validated	p.V1296L	0.929	77	0%	93	40.9%	0	-	benign(0.022)	tolerated(0.19)	neutral(0.051)	NULL
ATXN2	6311	genome.wustl.edu	37	12	111907919	111907919	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002973.3	-1	reviewed	p.A1103	0.666	144	0%	211	37%	119	70.5%	unknown(0)	-	-	NULL
ATXN2	6311	genome.wustl.edu	37	12	111951257	111951257	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002973.3	-1	reviewed	p.E648*	1.000	161	0%	206	42.2%	8	25%	-	-	-	NULL
ATXN2	6311	genome.wustl.edu	37	12	111951304	111951304	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002973.3	-1	reviewed	p.R632Q	1.000	122	0%	205	33.2%	14	14.2%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
ATXN2	6311	genome.wustl.edu	37	12	111956087	111956087	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002973.3	-1	reviewed	p.P537	1.000	129	0%	147	48.3%	10	30%	-	-	-	NULL
ATXN2	6311	genome.wustl.edu	37	12	111962999	111962999	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002973.3	-1	reviewed	p.D391	0.995	232	0%	335	14%	3	0%	-	-	-	NULL
NAA25	80018	genome.wustl.edu	37	12	112528643	112528643	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024953.3	-1	reviewed	p.R57I	1.000	132	0%	171	47.4%	8	62.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_TPR-like
TRAFD1	10906	genome.wustl.edu	37	12	112568330	112568330	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001143906.1	+1	validated	p.A2T	1.000	299	0%	409	41.6%	13	38.4%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
OAS3	4940	genome.wustl.edu	37	12	113403750	113403750	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006187.2	+1	reviewed	p.R869C	0.795	64	0%	55	47.3%	14	50%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_NTP_transf_2,superfamily_Nucleotidyltransferase
LHX5	64211	genome.wustl.edu	37	12	113901345	113901345	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_022363.2	-1	reviewed	p.Y287D	1.000	14	0%	28	25%	0	-	probably_damaging(0.98)	deleterious(0.02)	deleterious(0.807)	NULL
TBX5	6910	genome.wustl.edu	37	12	114803998	114803998	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000192.3	-1	reviewed	p.S318R	0.814	300	0.3%	398	44.2%	0	-	benign(0.335)	tolerated(0.08)	neutral(0.405)	NULL
MED13L	23389	genome.wustl.edu	37	12	116422043	116422043	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015335.3	-1	validated	p.E1491	1.000	115	0%	170	48.8%	46	39.1%	-	-	-	HMMPfam_TRAP_240kDa
MED13L	23389	genome.wustl.edu	37	12	116434360	116434360	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015335.3	-1	validated	p.R973W	1.000	83	0%	118	38.1%	9	55.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MED13L	23389	genome.wustl.edu	37	12	116460322	116460322	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015335.3	-1	validated	p.P188	0.633	120	0%	189	42.9%	7	14.2%	-	-	-	NULL
MED13L	23389	genome.wustl.edu	37	12	116549268	116549268	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015335.3	-1	validated	p.T120	1.000	213	0%	261	37.9%	6	66.6%	-	-	-	NULL
TESC	54997	genome.wustl.edu	37	12	117479767	117479767	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017899.3	-1	validated	p.F237	0.873	40	0%	70	58.6%	11	9%	-	-	-	superfamily_EF-hand
NOS1	4842	genome.wustl.edu	37	12	117691506	117691506	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000620.2	-1	reviewed	p.S862*	1.000	164	0%	240	48.3%	0	-	-	-	-	HMMPfam_Flavodoxin_1,superfamily_Flavoproteins
KSR2	283455	genome.wustl.edu	37	12	118298172	118298172	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_173598.4	-1	validated	p.R53H	1.000	47	0%	62	54.8%	1	0%	possibly_damaging(0.865)	deleterious(0.04)	deleterious(0.684)	NULL
RFC5	5985	genome.wustl.edu	37	12	118456908	118456908	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007370.4	+1	reviewed	p.D33Y	1.000	167	0%	215	14.9%	3	0%	possibly_damaging(0.944)	deleterious(0.01)	deleterious(0.794)	superfamily_SSF52540
RFC5	5985	genome.wustl.edu	37	12	118457550	118457550	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007370.4	+1	reviewed	p.E82*	1.000	138	0%	142	40.1%	10	10%	-	-	-	HMMSmart_AAA,HMMPfam_AAA,superfamily_SSF52540
TAOK3	51347	genome.wustl.edu	37	12	118673399	118673399	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016281.3	-1	validated	p.A172V	1.000	224	0.4%	229	48%	4	50%	benign(0)	tolerated(1)	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
PRKAB1	5564	genome.wustl.edu	37	12	120117793	120117793	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006253.4	+1	reviewed	p.A241V	0.999	218	0%	330	26.4%	83	13.2%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_AMPKBI
CIT	11113	genome.wustl.edu	37	12	120135628	120135628	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007174.1	-1	validated	p.A1864	0.002	98	0%	157	41.4%	9	66.6%	-	-	-	HMMPfam_CNH,HMMSmart_SM00036
CIT	11113	genome.wustl.edu	37	12	120210615	120210615	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007174.1	-1	validated	p.D681N	1.000	94	0%	143	11.9%	1	0%	possibly_damaging(0.505)	tolerated(0.09)	neutral(0.466)	NULL
GCN1L1	10985	genome.wustl.edu	37	12	120567162	120567162	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006836.1	-1	validated	p.D2603G	1.000	162	0%	221	45.2%	64	0%	possibly_damaging(0.546)	deleterious(0.01)	deleterious(0.591)	superfamily_ARM repeat
GCN1L1	10985	genome.wustl.edu	37	12	120575054	120575054	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006836.1	-1	validated	p.E2245K	1.000	221	0%	224	45.5%	52	42.3%	benign(0.006)	deleterious(0.01)	neutral(0.406)	superfamily_ARM repeat
COX6A1	1337	genome.wustl.edu	37	12	120876272	120876272	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004373.2	+1	reviewed	p.E65G	0.226	33	0%	56	39.3%	1664	49.6%	benign(0.359)	tolerated(0.08)	neutral(0.414)	HMMPfam_COX6A,superfamily_COX6A
CABP1	9478	genome.wustl.edu	37	12	121098115	121098115	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001033677.1	+1	reviewed	p.E268K	1.000	113	0%	128	44.5%	1	0%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	superfamily_EF-hand
MLEC	9761	genome.wustl.edu	37	12	121132708	121132708	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014730.2	+1	validated	p.D166N	1.000	275	0%	414	37.9%	139	41%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ACADS	35	genome.wustl.edu	37	12	121176360	121176360	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000017.2	+1	reviewed	p.G274S	1.000	23	0%	44	54.5%	83	49.3%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_Acyl-CoA_dh_1,superfamily_AcylCoADH_C_like
OASL	8638	genome.wustl.edu	37	12	121458637	121458637	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003733.2	-1	validated	p.I424	0.260	90	0%	128	50%	0	-	-	-	-	HMMSmart_SM00213,superfamily_Ubiquitin-like
WDR66	144406	genome.wustl.edu	37	12	122359260	122359260	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_144668.4	+1	validated	p.E17*	0.009	212	0%	249	44.2%	0	-	-	-	-	superfamily_WD40 repeat-like
MLXIP	22877	genome.wustl.edu	37	12	122625589	122625589	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000319080	+1	known	p.S866F	1.000	47	0%	59	42.4%	34	26.4%	probably_damaging(0.958)	tolerated(0.05)	deleterious(0.747)	NULL
DIABLO	56616	genome.wustl.edu	37	12	122701381	122701381	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_019887.4	-1	reviewed	p.Y117*	0.952	353	0%	473	48%	34	17.6%	-	-	-	superfamily_Smac/diablo,HMMPfam_Smac_DIABLO
CLIP1	6249	genome.wustl.edu	37	12	122757433	122757433	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002956.2	-1	validated	p.E1425K	1.000	218	0%	291	48.8%	41	75.6%	possibly_damaging(0.867)	deleterious(0.03)	deleterious(0.701)	NULL
CLIP1	6249	genome.wustl.edu	37	12	122825788	122825788	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002956.2	-1	validated	p.E644*	0.999	276	0%	359	42.3%	4	25%	-	-	-	NULL
KNTC1	9735	genome.wustl.edu	37	12	123087264	123087264	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014708.4	+1	reviewed	p.A1601V	1.000	297	0%	410	43.2%	1	0%	benign(0.005)	tolerated(0.27)	neutral(0.034)	HMMPfam_Rod_C
KNTC1	9735	genome.wustl.edu	37	12	123093974	123093974	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014708.4	+1	reviewed	p.R1847Q	0.000	238	0%	254	47.2%	7	42.8%	benign(0.001)	tolerated(0.41)	neutral(0.015)	HMMPfam_Rod_C
KNTC1	9735	genome.wustl.edu	37	12	123105139	123105139	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014708.4	+1	reviewed	p.R2088I	0.997	154	0%	232	15.5%	1	100%	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	HMMPfam_Rod_C
DENR	8562	genome.wustl.edu	37	12	123249868	123249868	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003677.3	+1	reviewed	p.E77*	1.000	424	0%	526	42.2%	6	0%	-	-	-	superfamily_TIF_SUI1
ARL6IP4	51329	genome.wustl.edu	37	12	123465788	123465788	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018694.2	+1	validated	p.R157S	0.113	33	0%	43	30.2%	74	39.1%	benign(0.299)	tolerated(0.52)	neutral(0.101)	HMMPfam_SR-25
ARL6IP4	51329	genome.wustl.edu	37	12	123465894	123465894	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000392433	+1	known	p.G177	0.005	16	0%	17	58.8%	10	50%	-	-	-	NULL
ARL6IP4	51329	genome.wustl.edu	37	12	123466014	123466014	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000392433	+1	known	p.C217	0.000	5	0.000	8	0.500	1	0%	-	-	-	HMMPfam_SR-25
MPHOSPH9	10198	genome.wustl.edu	37	12	123649915	123649915	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_022782.2	-1	validated	p.E749*	0.996	289	0.3%	336	38.1%	0	-	-	-	-	NULL
MPHOSPH9	10198	genome.wustl.edu	37	12	123687316	123687316	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_022782.2	-1	validated	p.D394Y	0.474	182	0%	232	43.5%	5	60%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
SBNO1	55206	genome.wustl.edu	37	12	123834929	123834929	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018183.3	-1	validated	p.P20	0.828	128	0%	158	46.8%	14	50%	-	-	-	NULL
TMED2	10959	genome.wustl.edu	37	12	124071330	124071330	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006815.3	+1	validated	p.D73N	1.000	139	0%	178	38.8%	99	41.4%	benign(0.247)	deleterious(0.03)	neutral(0.390)	HMMPfam_EMP24_GP25L,superfamily_Supernatant protein factor (SPF) C-terminal domain
TCTN2	79867	genome.wustl.edu	37	12	124175196	124175196	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024809.3	+1	validated	p.A336	0.000	174	0%	187	43.9%	8	25%	-	-	-	HMMPfam_DUF1619
ATP6V0A2	23545	genome.wustl.edu	37	12	124233153	124233153	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012463.3	+1	reviewed	p.V586F	1.000	323	0%	391	39.4%	0	-	possibly_damaging(0.949)	tolerated(0.05)	deleterious(0.738)	HMMPfam_V_ATPase_I
DNAH10	196385	genome.wustl.edu	37	12	124317763	124317763	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_207437.3	+1	validated	p.E1432K	0.996	136	0%	187	44.9%	0	-	possibly_damaging(0.941)	deleterious(0.02)	deleterious(0.770)	HMMPfam_DHC_N2
DNAH10	196385	genome.wustl.edu	37	12	124323139	124323139	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_207437.3	+1	validated	p.R1562I	0.994	164	0%	158	44.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DHC_N2
DNAH10	196385	genome.wustl.edu	37	12	124352046	124352046	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_207437.3	+1	validated	p.E2282D	0.956	221	0%	336	41.1%	0	-	benign(0.003)	tolerated(0.63)	neutral(0.004)	NULL
NCOR2	9612	genome.wustl.edu	37	12	124829344	124829344	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006312.3	-1	validated	p.E1512K	1.000	30	0%	64	50%	74	31%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	NULL
NCOR2	9612	genome.wustl.edu	37	12	124835217	124835217	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006312.3	-1	validated	p.R1261C	1.000	41	0%	60	26.7%	351	28.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NCOR2	9612	genome.wustl.edu	37	12	124862911	124862911	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006312.3	-1	validated	p.R680Q	0.981	112	0%	145	55.2%	53	37.7%	unknown(0)	deleterious(0.03)	-	NULL
NCOR2	9612	genome.wustl.edu	37	12	124915314	124915314	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006312.3	-1	validated	p.R301H	1.000	60	0%	97	42.3%	49	44.8%	unknown(0)	deleterious(0.01)	-	NULL
NCOR2	9612	genome.wustl.edu	37	12	124970990	124970990	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006312.3	-1	validated	p.E77A	1.000	33	0%	63	28.6%	30	56.6%	unknown(0)	deleterious(0)	-	NULL
UBC	7316	genome.wustl.edu	37	12	125398194	125398194	+	Silent	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021009.4	-1	validated	p.R42	1.000	386	0%	438	17.6%	2330	18.1%	-	-	-	HMMPfam_ubiquitin,HMMSmart_SM00213,PatternScan_UBIQUITIN_1,superfamily_Ubiquitin-like
TMEM132C	92293	genome.wustl.edu	37	12	129190680	129190680	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001136103.2	+1	provisional	p.F944C	1.000	76	0%	89	33.7%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FZD10	11211	genome.wustl.edu	37	12	130648135	130648135	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007197.2	+1	reviewed	p.D216	0.997	23	0%	54	48.1%	14	42.8%	unknown(0)	-	-	NULL
FZD10	11211	genome.wustl.edu	37	12	130648241	130648241	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007197.2	+1	reviewed	p.D252N	1.000	75	0%	94	46.8%	31	35.4%	unknown(0)	-	-	HMMPfam_Frizzled
RIMBP2	23504	genome.wustl.edu	37	12	130935870	130935870	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015347.4	-1	validated	p.I108S	0.000	52	0%	59	45.8%	1	0%	benign(0)	tolerated(0.49)	neutral(0.011)	NULL
GPR133	283383	genome.wustl.edu	37	12	131471825	131471825	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_198827.3	+1	validated	p.D226N	1.000	127	0%	170	51.2%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Concanavalin A-like lectins/glucanases
GPR133	283383	genome.wustl.edu	37	12	131476829	131476829	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_198827.3	+1	validated	p.E286D	0.854	237	0%	306	42.2%	0	-	benign(0.001)	deleterious(0.01)	neutral(0.406)	NULL
EP400	57634	genome.wustl.edu	37	12	132475235	132475235	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015409.3	+1	validated	p.N868H	0.996	168	0%	206	44.2%	2	0%	unknown(0)	-	-	NULL
DDX51	317781	genome.wustl.edu	37	12	132627345	132627345	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_175066.3	-1	validated	p.E200K	0.281	46	0%	68	39.7%	43	46.5%	benign(0.003)	tolerated(0.77)	neutral(0.001)	NULL
POLE	5426	genome.wustl.edu	37	12	133244973	133244973	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006231.2	-1	validated	p.E714	0.925	101	0%	94	43.6%	6	66.6%	-	-	-	HMMPfam_DNA_pol_B,HMMSmart_POLBc,superfamily_SSF56672
POLE	5426	genome.wustl.edu	37	12	133253184	133253184	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006231.2	-1	validated	p.P286R	1.000	174	0%	174	51.1%	25	64%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DNA_pol_B_exo,HMMSmart_POLBc,superfamily_RNaseH_fold
PGAM5	192111	genome.wustl.edu	37	12	133291548	133291548	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_138575.3	+1	validated	p.H99R	1.000	68	0%	103	37.9%	96	43.7%	possibly_damaging(0.877)	deleterious(0.01)	deleterious(0.747)	HMMPfam_PGAM,superfamily_Phosphoglycerate mutase-like
ANKLE2	23141	genome.wustl.edu	37	12	133313503	133313503	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015114.1	-1	validated	p.F523	0.359	61	0%	68	47.1%	2	0%	-	-	-	NULL
ANKLE2	23141	genome.wustl.edu	37	12	133327333	133327333	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015114.1	-1	validated	p.K248T	1.000	425	0%	503	42.7%	2	50%	probably_damaging(0.996)	tolerated(0.3)	deleterious(0.490)	NULL
ZNF268	10795	genome.wustl.edu	37	12	133779243	133779243	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003415.2	+1	validated	p.R324I	0.631	80	0%	86	40.7%	6	33.3%	probably_damaging(0.969)	tolerated(0.18)	neutral(0.467)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
LOC729535	729535	genome.wustl.edu	37	13	19271245	19271245	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_001130539.3	+1	model	p.G46D	0.178	55	0%	80	32.5%	3	0%	-	-	-	NULL
TPTE2	93492	genome.wustl.edu	37	13	19997208	19997208	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_199254.2	-1	validated	p.E521D	0.008	347	0%	438	42.5%	0	-	benign(0.044)	tolerated(0.2)	neutral(0.052)	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2
PSPC1	55269	genome.wustl.edu	37	13	20304467	20304467	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001042414.1	-1	validated	p.R357Q	1.000	349	0%	357	17.4%	96	14.5%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
ZMYM2	7750	genome.wustl.edu	37	13	20567402	20567402	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003453.2	+1	validated	p.E64K	1.000	156	0%	188	15.4%	13	7.6%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
ZMYM2	7750	genome.wustl.edu	37	13	20605542	20605542	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003453.2	+1	validated	p.S645	0.979	281	0.4%	351	43.6%	4	0%	-	-	-	HMMPfam_zf-FCS,HMMSmart_TRASH
ZMYM2	7750	genome.wustl.edu	37	13	20611029	20611029	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003453.2	+1	validated	p.F758V	1.000	320	0%	437	41.2%	13	46.1%	probably_damaging(0.958)	deleterious(0.04)	deleterious(0.750)	HMMPfam_zf-FCS,HMMSmart_TRASH
ZMYM2	7750	genome.wustl.edu	37	13	20656174	20656174	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003453.2	+1	validated	p.R1158*	1.000	115	0%	80	37.5%	15	20%	-	-	-	NULL
XPO4	64328	genome.wustl.edu	37	13	21383304	21383304	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_022459.4	-1	validated	p.R471*	1.000	164	0%	203	48.8%	6	0%	-	-	-	superfamily_ARM-type_fold
LATS2	26524	genome.wustl.edu	37	13	21549116	21549116	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014572.2	-1	reviewed	p.R1054*	0.013	168	0%	238	23.5%	6	0%	-	-	-	NULL
FGF9	2254	genome.wustl.edu	37	13	22246297	22246297	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002010.2	+1	reviewed	p.I82	1.000	64	0%	47	17%	0	-	-	-	-	HMMPfam_FGF,HMMSmart_SM00442,superfamily_Cytokine
SGCG	6445	genome.wustl.edu	37	13	23777864	23777864	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000231.2	+1	reviewed	p.E11*	1.000	206	0%	312	43.9%	0	-	-	-	-	NULL
PARP4	143	genome.wustl.edu	37	13	25051988	25051988	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006437.3	-1	reviewed	p.E547G	1.000	37	0%	36	16.7%	6	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PARP,superfamily_SSF56399
ATP12A	479	genome.wustl.edu	37	13	25263465	25263465	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001676.5	+1	reviewed	p.E166D	1.000	388	0%	502	45.8%	0	-	possibly_damaging(0.767)	tolerated(0.08)	deleterious(0.585)	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transmembrane domain M
RNF17	56163	genome.wustl.edu	37	13	25374652	25374652	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_031277.2	+1	reviewed	p.D580Y	1.000	298	0%	357	41.2%	0	-	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	NULL
RNF17	56163	genome.wustl.edu	37	13	25400128	25400128	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000381927	+1	known	p.W757C	0.044	5	0.000	10	0.600	0	-	-	-	-	NULL
MTMR6	9107	genome.wustl.edu	37	13	25842002	25842002	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004685.3	-1	validated	p.K73N	1.000	217	0.5%	266	37.6%	3	100%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_PH domain-like
ATP8A2	51761	genome.wustl.edu	37	13	26125499	26125499	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016529.4	+1	validated	p.K305N	1.000	275	0%	398	41.5%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ATP8A2	51761	genome.wustl.edu	37	13	26343361	26343361	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016529.4	+1	validated	p.I854	0.004	53	0%	92	46.7%	0	-	-	-	-	superfamily_HAD-like
MTIF3	219402	genome.wustl.edu	37	13	28014344	28014344	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152912.4	-1	reviewed	p.K81T	1.000	183	0%	247	48.2%	21	47.6%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_IF3_N,superfamily_Translation initiation factor IF3 N-terminal domain
FLT3	2322	genome.wustl.edu	37	13	28622457	28622457	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004119.2	-1	reviewed	p.R387Q	0.004	349	0.3%	429	44.5%	0	-	benign(0)	tolerated(0.75)	neutral(0.002)	NULL
PAN3	255967	genome.wustl.edu	37	13	28844889	28844889	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_175854.7	+1	validated	p.S415Y	1.000	241	0%	276	40.9%	8	50%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	superfamily_Kinase_like
PAN3	255967	genome.wustl.edu	37	13	28851452	28851452	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_175854.7	+1	validated	p.L510V	1.000	310	0%	362	50.3%	6	50%	possibly_damaging(0.601)	tolerated(0.45)	neutral(0.220)	superfamily_Kinase_like
FLT1	2321	genome.wustl.edu	37	13	28891687	28891687	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002019.4	-1	reviewed	p.R1112C	0.995	172	0%	223	51.6%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
FLT1	2321	genome.wustl.edu	37	13	29001901	29001901	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002019.4	-1	reviewed	p.L422	1.000	209	0%	237	40.5%	9	0%	-	-	-	HMMSmart_SM00409,superfamily_Immunoglobulin
MTUS2	23281	genome.wustl.edu	37	13	30054269	30054269	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000417109	+1	known	p.S18F	0.000	32	0%	25	48%	0	-	unknown(0)	-	-	NULL
SLC7A1	6541	genome.wustl.edu	37	13	30107081	30107081	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003045.4	-1	validated	p.D137N	1.000	85	0%	109	48.6%	25	48%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
HMGB1	3146	genome.wustl.edu	37	13	31036818	31036818	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002128.4	-1	validated	p.R110C	1.000	114	0%	170	44.7%	258	39.1%	benign(0.058)	tolerated(0.11)	neutral(0.275)	HMMPfam_HMG_box,HMMSmart_SM00398,superfamily_HMG-box
USPL1	10208	genome.wustl.edu	37	13	31205223	31205223	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005800.4	+1	validated	p.Q160H	0.000	76	0%	115	20.9%	9	22.2%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
HSPH1	10808	genome.wustl.edu	37	13	31725823	31725823	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006644.2	-1	validated	p.R196W	0.998	173	0%	225	26.7%	23	26%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_HSP70,superfamily_Actin-like ATPase domain
RXFP2	122042	genome.wustl.edu	37	13	32355842	32355842	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_130806.3	+1	reviewed	p.N274D	0.895	221	0%	260	42.3%	0	-	benign(0.004)	tolerated(0.4)	neutral(0.016)	HMMSmart_SM00369,superfamily_L domain-like
RXFP2	122042	genome.wustl.edu	37	13	32366033	32366033	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_130806.3	+1	reviewed	p.L412	1.000	432	0%	550	42.5%	0	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
RXFP2	122042	genome.wustl.edu	37	13	32366846	32366846	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_130806.3	+1	reviewed	p.F469L	0.991	188	0%	247	46.6%	0	-	benign(0.003)	tolerated(0.46)	neutral(0.012)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
RXFP2	122042	genome.wustl.edu	37	13	32371485	32371485	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_130806.3	+1	reviewed	p.F645C	1.000	537	0%	694	42.2%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
FRY	10129	genome.wustl.edu	37	13	32709308	32709308	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_023037.2	+1	validated	p.K355N	1.000	137	0%	115	47.8%	0	-	possibly_damaging(0.897)	tolerated(0.15)	deleterious(0.595)	NULL
FRY	10129	genome.wustl.edu	37	13	32749762	32749762	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_023037.2	+1	validated	p.S805L	1.000	396	0%	495	40%	1	0%	benign(0.018)	tolerated(0.07)	neutral(0.320)	NULL
ZAR1L	646799	genome.wustl.edu	37	13	32885823	32885823	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001136571.1	-1	reviewed	p.S80	0.003	34	0%	50	44%	0	-	-	-	-	NULL
BRCA2	675	genome.wustl.edu	37	13	32906477	32906477	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000059.3	+1	reviewed	p.P288S	0.046	150	0%	172	41.3%	0	-	probably_damaging(0.991)	tolerated(0.1)	deleterious(0.730)	NULL
BRCA2	675	genome.wustl.edu	37	13	32912638	32912638	+	Missense_Mutation	SNP	A	A	C	rs80359432		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000059.3	+1	reviewed	p.E1382D	0.042	187	0%	232	44.4%	1	100%	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	NULL
BRCA2	675	genome.wustl.edu	37	13	32912750	32912750	+	Missense_Mutation	SNP	G	G	A	rs80359436		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000059.3	+1	reviewed	p.D1420N	0.050	75	0%	110	37.3%	0	-	benign(0.124)	deleterious(0.01)	neutral(0.416)	NULL
BRCA2	675	genome.wustl.edu	37	13	32913282	32913282	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000059.3	+1	reviewed	p.S1597Y	0.462	33	0%	52	42.3%	0	-	benign(0.002)	deleterious(0.03)	neutral(0.364)	NULL
BRCA2	675	genome.wustl.edu	37	13	32913846	32913846	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000059.3	+1	reviewed	p.T1785I	0.000	99	0%	120	44.2%	0	-	benign(0.106)	tolerated(0.29)	neutral(0.037)	NULL
BRCA2	675	genome.wustl.edu	37	13	32915295	32915295	+	Missense_Mutation	SNP	G	G	T	rs80358906	byCluster;byFrequency	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000059.3	+1	reviewed	p.R2268I	0.994	126	0%	157	41.4%	0	-	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
BRCA2	675	genome.wustl.edu	37	13	32929243	32929243	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000059.3	+1	reviewed	p.R2418I	0.004	163	0%	239	44.8%	0	-	probably_damaging(0.982)	deleterious(0.03)	deleterious(0.791)	NULL
N4BP2L1	90634	genome.wustl.edu	37	13	32978345	32978345	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001079691.1	-1	validated	p.E154*	1.000	271	0%	319	42.9%	1	0%	-	-	-	NULL
N4BP2L2	10443	genome.wustl.edu	37	13	33016682	33016682	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033111.3	-1	validated	p.F664	0.002	90	0%	120	40.8%	0	-	-	-	-	NULL
PDS5B	23047	genome.wustl.edu	37	13	33226000	33226000	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015032.3	+1	reviewed	p.Y56*	0.996	191	0%	215	44.2%	0	-	-	-	-	superfamily_ARM repeat
PDS5B	23047	genome.wustl.edu	37	13	33309466	33309466	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015032.3	+1	reviewed	p.R802Q	1.000	259	0%	355	18.6%	2	0%	benign(0.008)	tolerated(0.06)	neutral(0.323)	superfamily_ARM repeat
KL	9365	genome.wustl.edu	37	13	33635798	33635798	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004795.3	+1	reviewed	p.F861S	0.000	87	0%	124	37.1%	1	0%	benign(0)	tolerated(0.65)	neutral(0.003)	HMMPfam_Glyco_hydro_1,superfamily_(Trans)glycosidases
NBEA	26960	genome.wustl.edu	37	13	35615082	35615082	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015678.4	+1	validated	p.E103*	1.000	170	0%	216	49.5%	1	0%	-	-	-	superfamily_ARM repeat
NBEA	26960	genome.wustl.edu	37	13	35683434	35683434	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015678.4	+1	validated	p.R563I	1.000	239	0%	280	37.1%	0	-	probably_damaging(0.976)	deleterious(0.05)	deleterious(0.763)	superfamily_ARM repeat
NBEA	26960	genome.wustl.edu	37	13	35923326	35923326	+	Missense_Mutation	SNP	G	G	T	rs151318906	byCluster;by1000genomes	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015678.4	+1	validated	p.E1995D	1.000	279	0%	372	45.4%	0	-	possibly_damaging(0.796)	tolerated(0.54)	neutral(0.306)	HMMPfam_DUF1088,superfamily_ARM repeat
MAB21L1	4081	genome.wustl.edu	37	13	36049310	36049310	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005584.4	-1	reviewed	p.P322	0.083	122	0%	148	13.5%	0	-	-	-	-	HMMPfam_Mab-21
SOHLH2	54937	genome.wustl.edu	37	13	36765930	36765930	+	Splice_Site	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017826.2	-1	validated	e5+2	1.000	292	0%	289	41.5%	0	-	-	-	-	-
SPG20	23111	genome.wustl.edu	37	13	36886531	36886531	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001142294.1	-1	reviewed	p.E523*	1.000	235	0.4%	265	43%	14	14.2%	-	-	-	NULL
ALG5	29880	genome.wustl.edu	37	13	37524129	37524129	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_013338.4	-1	reviewed	p.R309*	1.000	141	0%	147	40.1%	19	31.5%	-	-	-	NULL
ALG5	29880	genome.wustl.edu	37	13	37569725	37569725	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_013338.4	-1	reviewed	p.I25	0.992	295	0%	358	37.7%	18	50%	-	-	-	NULL
TRPC4	7223	genome.wustl.edu	37	13	38229288	38229288	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003306.1	-1	validated	p.I607	1.000	138	0%	189	42.3%	0	-	-	-	-	HMMPfam_Ion_trans
UFM1	51569	genome.wustl.edu	37	13	38924257	38924257	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000379641	+1	known	p.I2	0.000	93	0%	103	46.6%	2	50%	-	-	-	NULL
FREM2	341640	genome.wustl.edu	37	13	39264606	39264606	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_207361.4	+1	reviewed	p.E1042G	1.000	135	0%	148	31.8%	2	0%	possibly_damaging(0.652)	deleterious(0.04)	deleterious(0.578)	NULL
COG6	57511	genome.wustl.edu	37	13	40253683	40253683	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000422759	+1	known	p.S205*	1.000	215	0%	241	37.8%	4	50%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_COG6
FOXO1	2308	genome.wustl.edu	37	13	41134688	41134688	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002015.3	-1	reviewed	p.R314C	1.000	106	0%	117	44.4%	18	16.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MRPS31	10240	genome.wustl.edu	37	13	41303566	41303566	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005830.3	-1	reviewed	p.R377I	1.000	101	0%	99	43.4%	0	-	probably_damaging(0.976)	deleterious(0)	deleterious(0.863)	NULL
MRPS31	10240	genome.wustl.edu	37	13	41341095	41341095	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005830.3	-1	reviewed	p.R76Q	0.001	370	0%	494	47.4%	17	29.4%	benign(0.098)	tolerated(0.62)	neutral(0.011)	NULL
ELF1	1997	genome.wustl.edu	37	13	41518058	41518058	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_172373.3	-1	reviewed	p.R178I	1.000	471	0%	484	44%	6	16.6%	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	superfamily_SSF46785
WBP4	11193	genome.wustl.edu	37	13	41636813	41636813	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007187.3	+1	reviewed	p.F12L	1.000	334	0%	391	18.2%	5	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_ZnF_U1,HMMPfam_zf-U1,superfamily_SSF57667
KBTBD7	84078	genome.wustl.edu	37	13	41767494	41767494	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032138.4	-1	provisional	p.Q300H	0.999	121	0%	177	37.3%	27	33.3%	possibly_damaging(0.716)	tolerated(0.09)	deleterious(0.555)	NULL
MTRF1	9617	genome.wustl.edu	37	13	41800681	41800681	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004294.2	-1	reviewed	p.E338*	1.000	438	0%	472	47%	2	50%	-	-	-	HMMPfam_RF-1,superfamily_SSF75620
KIAA0564	23078	genome.wustl.edu	37	13	42267087	42267087	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015058.1	-1	validated	p.D1196Y	0.999	184	0%	220	27.7%	5	0%	probably_damaging(0.981)	deleterious(0.05)	deleterious(0.771)	NULL
KIAA0564	23078	genome.wustl.edu	37	13	42460121	42460121	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015058.1	-1	validated	p.E304*	1.000	222	0%	270	41.9%	2	50%	-	-	-	NULL
DGKH	160851	genome.wustl.edu	37	13	42803249	42803249	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152910.3	+1	reviewed	p.E1153K	1.000	339	0%	374	13.4%	1	0%	benign(0.247)	tolerated(0.39)	neutral(0.041)	NULL
AKAP11	11215	genome.wustl.edu	37	13	42875845	42875845	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016248.2	+1	reviewed	p.F988C	0.165	82	0%	128	45.3%	1	0%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	NULL
EPSTI1	94240	genome.wustl.edu	37	13	43566147	43566147	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001002264.1	-1	validated	p.S52L	0.000	21	0%	16	62.5%	0	-	benign(0.301)	-	-	NULL
ENOX1	55068	genome.wustl.edu	37	13	43930247	43930247	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001127615.1	-1	validated	p.S211A	0.988	50	0%	92	38%	0	-	benign(0.341)	tolerated(0.16)	neutral(0.167)	superfamily_SSF54928
CCDC122	160857	genome.wustl.edu	37	13	44442875	44442875	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_144974.3	-1	validated	p.Q37H	0.700	192	0%	239	16.3%	0	-	possibly_damaging(0.926)	deleterious(0.02)	deleterious(0.758)	NULL
TSC22D1	8848	genome.wustl.edu	37	13	45010694	45010694	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006022.2	-1	provisional	p.S24Y	1.000	104	0%	116	44.8%	33	51.5%	possibly_damaging(0.952)	deleterious(0)	deleterious(0.840)	NULL
FAM194B	220081	genome.wustl.edu	37	13	46135539	46135539	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_182542.2	-1	predicted	p.E458*	0.020	734	0%	863	40.6%	0	-	-	-	-	NULL
ZC3H13	23091	genome.wustl.edu	37	13	46543843	46543843	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015070.3	-1	validated	p.R946*	1.000	502	0%	623	10.9%	7	0%	-	-	-	NULL
CPB2	1361	genome.wustl.edu	37	13	46638867	46638867	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001872.3	-1	reviewed	p.W238R	1.000	215	0%	278	41.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Peptidase_M14,HMMSmart_SM00631,superfamily_Zn-dependent exopeptidases
LCP1	3936	genome.wustl.edu	37	13	46701847	46701847	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002298.4	-1	reviewed	p.S588Y	1.000	193	0%	237	35%	11	27.2%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_CH,HMMSmart_CH,superfamily_Calponin-homology
MED4	29079	genome.wustl.edu	37	13	48651340	48651340	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014166.2	-1	provisional	p.E250*	1.000	257	0%	305	47.5%	45	28.8%	-	-	-	HMMPfam_VDRIP
RB1	5925	genome.wustl.edu	37	13	48939036	48939036	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000321.2	+1	reviewed	p.N290H	1.000	182	0%	249	10.8%	0	-	probably_damaging(0.991)	tolerated(0.09)	deleterious(0.740)	NULL
RCBTB2	1102	genome.wustl.edu	37	13	49086240	49086240	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001268.2	-1	reviewed	p.R196Q	1.000	209	0%	276	49.3%	9	11.1%	probably_damaging(1)	tolerated(0.11)	deleterious(0.772)	HMMPfam_RCC1,superfamily_RCC1/BLIP-II
CDADC1	81602	genome.wustl.edu	37	13	49842083	49842083	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_030911.2	+1	validated	p.F296	0.989	121	0%	127	44.1%	0	-	-	-	-	NULL
SETDB2	83852	genome.wustl.edu	37	13	50050684	50050684	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_031915.2	+1	validated	p.S138	0.000	65	0%	83	14.5%	0	-	-	-	-	NULL
SETDB2	83852	genome.wustl.edu	37	13	50050985	50050985	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_031915.2	+1	validated	p.E239*	0.999	191	0%	240	28.7%	3	0%	-	-	-	superfamily_SET domain
SETDB2	83852	genome.wustl.edu	37	13	50056876	50056876	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_031915.2	+1	validated	p.R399K	1.000	66	0%	123	34.1%	7	28.5%	probably_damaging(1)	tolerated(0.49)	deleterious(0.510)	HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain
RCBTB1	55213	genome.wustl.edu	37	13	50115948	50115948	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018191.3	-1	reviewed	p.R396	0.990	178	0%	169	37.9%	5	100%	-	-	-	HMMSmart_BTB,superfamily_BTB/POZ_fold,HMMPfam_BTB
RCBTB1	55213	genome.wustl.edu	37	13	50118958	50118958	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018191.3	-1	reviewed	p.E363*	1.000	251	0%	317	43.2%	3	0%	-	-	-	superfamily_BTB/POZ_fold,HMMPfam_BTB
KCNRG	283518	genome.wustl.edu	37	13	50589903	50589903	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_173605.1	+1	validated	p.R92C	0.550	230	0%	257	37.4%	3	33.3%	possibly_damaging(0.848)	deleterious(0.05)	deleterious(0.671)	HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_POZ domain
KCNRG	283518	genome.wustl.edu	37	13	50590112	50590112	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_173605.1	+1	validated	p.M161I	0.007	91	0%	132	45.5%	26	38.4%	benign(0.004)	tolerated(0.05)	neutral(0.345)	NULL
GUCY1B2	2974	genome.wustl.edu	37	13	51599479	51599479	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000389600	-1	known	p.F100	1.000	219	0%	224	38.8%	0	-	-	-	-	HMMPfam_HNOBA
INTS6	26512	genome.wustl.edu	37	13	51939971	51939971	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012141.2	-1	reviewed	p.R861*	1.000	284	0.4%	328	41.2%	5	20%	-	-	-	NULL
INTS6	26512	genome.wustl.edu	37	13	51969505	51969505	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012141.2	-1	reviewed	p.E182*	1.000	131	0%	205	47.8%	6	0%	-	-	-	NULL
NEK5	341676	genome.wustl.edu	37	13	52676336	52676336	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_199289.1	-1	provisional	p.S234	0.001	162	0%	169	42%	0	-	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
NEK5	341676	genome.wustl.edu	37	13	52684547	52684547	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_199289.1	-1	provisional	e5-1	1.000	467	0%	563	44%	0	-	-	-	-	-
NEK3	4752	genome.wustl.edu	37	13	52728269	52728269	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000258597	-1	known	p.L53I	1.000	97	0%	146	41.1%	0	-	probably_damaging(1)	tolerated(0.2)	deleterious(0.549)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
OLFM4	10562	genome.wustl.edu	37	13	53617255	53617255	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006418.3	+1	reviewed	p.L196I	1.000	120	0%	166	31.9%	43	23.2%	benign(0.106)	tolerated(0.41)	neutral(0.023)	NULL
PCDH17	27253	genome.wustl.edu	37	13	58207195	58207195	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001040429.2	+1	reviewed	p.T172M	1.000	22	0%	36	41.7%	6	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDH17	27253	genome.wustl.edu	37	13	58208745	58208745	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001040429.2	+1	reviewed	p.P689T	0.999	14	0%	23	26.1%	8	0%	possibly_damaging(0.646)	tolerated(0.3)	neutral(0.255)	HMMSmart_SM00112
PCDH17	27253	genome.wustl.edu	37	13	58299295	58299295	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001040429.2	+1	reviewed	p.A1116D	0.997	198	0%	241	45.2%	1	0%	benign(0.007)	deleterious(0.02)	neutral(0.383)	NULL
LOC341689	341689	genome.wustl.edu	37	13	59103020	59103020	+	RNA	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XR_017487.3	+1	model	NULL	0.314	106	0%	174	46.6%	0	-	-	-	-	-
LOC341689	341689	genome.wustl.edu	37	13	59103751	59103751	+	RNA	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XR_017487.3	+1	model	NULL	0.264	117	0%	123	31.7%	0	-	-	-	-	-
DIAPH3	81624	genome.wustl.edu	37	13	60384934	60384934	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001042517.1	-1	validated	p.E1051*	1.000	462	0%	619	43.9%	0	-	-	-	-	HMMSmart_SM00498
DIAPH3	81624	genome.wustl.edu	37	13	60554976	60554976	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001042517.1	-1	validated	p.A500S	0.992	368	0%	423	15.1%	0	-	possibly_damaging(0.796)	tolerated(0.67)	neutral(0.301)	NULL
PCDH9	5101	genome.wustl.edu	37	13	67205542	67205542	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_203487.2	-1	reviewed	p.S1047L	1.000	52	0%	99	51.5%	0	-	benign(0.026)	deleterious(0.04)	neutral(0.350)	NULL
KLHL1	57626	genome.wustl.edu	37	13	70413273	70413273	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020866.2	-1	validated	p.H417N	1.000	273	0%	310	41.6%	0	-	benign(0)	tolerated(0.32)	neutral(0.024)	NULL
DIS3	22894	genome.wustl.edu	37	13	73347916	73347916	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014953.3	-1	validated	p.R382Q	1.000	262	0%	348	46%	10	40%	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	NULL
TBC1D4	9882	genome.wustl.edu	37	13	75884108	75884108	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014832.2	-1	validated	p.R855*	1.000	540	0%	626	40.9%	0	-	-	-	-	NULL
TBC1D4	9882	genome.wustl.edu	37	13	75900509	75900509	+	Silent	SNP	C	C	A	rs143268388	by1000genomes	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014832.2	-1	validated	p.P619	0.995	149	0%	213	43.2%	7	28.5%	-	-	-	NULL
TBC1D4	9882	genome.wustl.edu	37	13	75936576	75936576	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014832.2	-1	validated	p.I222	0.935	137	0%	171	44.4%	1	0%	-	-	-	HMMPfam_PID,HMMSmart_SM00462,superfamily_PH domain-like
LMO7	4008	genome.wustl.edu	37	13	76382124	76382124	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015842.2	+1	reviewed	p.E336*	1.000	105	0%	131	39.7%	0	-	-	-	-	NULL
LMO7	4008	genome.wustl.edu	37	13	76382315	76382315	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000447038	+1	known	p.E308K	1.000	139	0%	193	44%	0	-	-	-	-	NULL
FBXL3	26224	genome.wustl.edu	37	13	77581410	77581410	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012158.2	-1	reviewed	p.R386H	1.000	155	0%	274	42.7%	23	65.2%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	superfamily_SSF52047
MYCBP2	23077	genome.wustl.edu	37	13	77725049	77725049	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015057.4	-1	validated	p.K2279N	1.000	336	0%	469	46.1%	3	66.6%	probably_damaging(0.989)	tolerated(0.37)	neutral(0.459)	superfamily_E set domains
MYCBP2	23077	genome.wustl.edu	37	13	77786162	77786162	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015057.4	-1	validated	p.R1026Q	1.000	208	0%	277	43.3%	1	100%	probably_damaging(0.997)	tolerated(0.08)	deleterious(0.766)	superfamily_RCC1/BLIP-II
RNF219	79596	genome.wustl.edu	37	13	79190112	79190112	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024546.3	-1	validated	p.S595Y	0.998	42	0%	56	14.3%	1	0%	possibly_damaging(0.805)	deleterious(0.01)	deleterious(0.709)	NULL
SLITRK1	114798	genome.wustl.edu	37	13	84453630	84453630	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_052910.1	-1	reviewed	p.S671	1.000	80	0%	79	11.4%	0	-	-	-	-	NULL
SLITRK1	114798	genome.wustl.edu	37	13	84455450	84455450	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_052910.1	-1	reviewed	p.L65M	1.000	88	1.1%	121	28.9%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	superfamily_SSF52058
SLITRK6	84189	genome.wustl.edu	37	13	86368962	86368962	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032229.2	-1	validated	p.N561S	0.617	267	0%	367	13.1%	4	25%	benign(0)	tolerated(0.25)	neutral(0.037)	HMMSmart_SM00082,superfamily_L domain-like
SLITRK5	26050	genome.wustl.edu	37	13	88330517	88330517	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015567.1	+1	validated	p.F958L	1.000	148	0%	153	34%	1	100%	benign(0.154)	tolerated(0.61)	neutral(0.018)	NULL
DCT	1638	genome.wustl.edu	37	13	95121132	95121132	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001129889.1	-1	validated	p.D155N	1.000	194	0%	283	43.1%	0	-	possibly_damaging(0.54)	tolerated(0.08)	deleterious(0.483)	superfamily_Di-copper_centre
TGDS	23483	genome.wustl.edu	37	13	95244505	95244505	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014305.2	-1	validated	p.K71T	1.000	318	0%	437	49.4%	10	80%	benign(0.003)	tolerated(0.37)	neutral(0.019)	HMMPfam_Epimerase,superfamily_NAD(P)-binding Rossmann-fold domains
CLDN10	9071	genome.wustl.edu	37	13	96212647	96212647	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006984.4	+1	reviewed	p.M132V	0.772	340	0%	451	45.7%	12	58.3%	benign(0.406)	deleterious(0.02)	deleterious(0.514)	HMMPfam_PMP22_Claudin
DZIP1	22873	genome.wustl.edu	37	13	96237094	96237094	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_198968.2	-1	validated	p.S807F	0.000	175	0%	265	40%	0	-	benign(0.011)	tolerated(0.1)	neutral(0.287)	NULL
DZIP1	22873	genome.wustl.edu	37	13	96241462	96241462	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_198968.2	-1	validated	e16-1	1.000	127	0%	172	45.9%	0	-	-	-	-	-
OXGR1	27199	genome.wustl.edu	37	13	97639571	97639571	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_080818.3	-1	reviewed	p.R148Q	0.011	97	0%	121	38%	3	0%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
RNF113B	140432	genome.wustl.edu	37	13	98828638	98828638	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_178861.4	-1	validated	p.R285W	1.000	117	0%	130	45.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_RING,HMMPfam_zf-C3HC4,superfamily_SSF57850
STK24	8428	genome.wustl.edu	37	13	99127564	99127564	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003576.3	-1	validated	p.E139K	1.000	278	0%	338	45.9%	30	26.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
SLC15A1	6564	genome.wustl.edu	37	13	99337154	99337154	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005073.3	-1	reviewed	p.L651I	0.977	161	0.6%	188	41%	13	53.8%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_MFS general substrate transporter
DOCK9	23348	genome.wustl.edu	37	13	99520541	99520541	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001130049.1	-1	validated	p.R1013*	1.000	186	0%	253	23.3%	10	10%	-	-	-	NULL
GPR183	1880	genome.wustl.edu	37	13	99947399	99947399	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004951.4	-1	reviewed	p.A334D	0.995	236	0%	307	48.2%	2	0%	probably_damaging(0.992)	deleterious(0.02)	deleterious(0.831)	superfamily_SSF81321
TM9SF2	9375	genome.wustl.edu	37	13	100206576	100206576	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004800.1	+1	provisional	p.R503*	1.000	180	0%	216	25.5%	84	0%	-	-	-	HMMPfam_EMP70
NALCN	259232	genome.wustl.edu	37	13	101881808	101881808	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_052867.2	-1	validated	p.S521*	1.000	189	0%	191	42.4%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
ITGBL1	9358	genome.wustl.edu	37	13	102250624	102250624	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004791.1	+1	provisional	p.S330	0.425	114	0%	155	20%	0	-	-	-	-	HMMPfam_EGF_2,superfamily_SSF57196
TPP2	7174	genome.wustl.edu	37	13	103290642	103290642	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003291.2	+1	reviewed	p.P630	0.088	165	0%	244	49.6%	15	60%	-	-	-	NULL
TPP2	7174	genome.wustl.edu	37	13	103299677	103299677	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003291.2	+1	reviewed	p.D871N	1.000	160	0%	207	48.8%	13	38.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
METTL21C	196541	genome.wustl.edu	37	13	103338482	103338482	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001010977.1	-1	predicted	p.E232*	1.000	95	0%	107	51.4%	0	-	-	-	-	HMMPfam_Methyltransf_16,superfamily_SSF53335
LOC643677	643677	genome.wustl.edu	37	13	103383305	103383305	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_002344085.1	-1	model	p.R6429I	0.000	124	0%	185	42.7%	0	-	unknown(0)	-	-	NULL
LOC643677	643677	genome.wustl.edu	37	13	103388013	103388013	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_002344085.1	-1	model	p.E4860*	0.087	356	0%	492	45.9%	0	-	-	-	-	NULL
LOC643677	643677	genome.wustl.edu	37	13	103393596	103393596	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_002344085.1	-1	model	p.L3080I	0.007	82	0%	82	19.5%	0	-	-	-	-	NULL
LOC643677	643677	genome.wustl.edu	37	13	103394081	103394081	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_002344085.1	-1	model	p.S2918L	0.000	75	0%	106	49.1%	0	-	-	-	-	NULL
LOC643677	643677	genome.wustl.edu	37	13	103394459	103394459	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_002344085.1	-1	model	p.K2792T	0.003	272	0%	296	17.6%	0	-	-	-	-	NULL
LOC643677	643677	genome.wustl.edu	37	13	103394956	103394956	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_002344085.1	-1	model	p.A2626	0.001	203	0%	244	43.4%	0	-	-	-	-	NULL
LOC643677	643677	genome.wustl.edu	37	13	103395289	103395289	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_002344085.1	-1	model	p.L2515	0.000	165	0%	169	37.9%	0	-	-	-	-	NULL
LOC643677	643677	genome.wustl.edu	37	13	103396449	103396449	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_002344085.1	-1	model	p.S2129R	0.000	514	0.2%	733	16.6%	0	-	-	-	-	NULL
LOC643677	643677	genome.wustl.edu	37	13	103401396	103401396	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_002344085.1	-1	model	p.L480M	0.001	160	0%	197	44.2%	0	-	-	-	-	NULL
LOC643677	643677	genome.wustl.edu	37	13	103401546	103401546	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_002344085.1	-1	model	p.T430A	0.000	62	0%	81	61.7%	0	-	-	-	-	NULL
TEX30	93081	genome.wustl.edu	37	13	103421846	103421846	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_138779.3	-1	validated	p.C21G	1.000	164	0%	206	41.7%	2	50%	benign(0.332)	tolerated(0.08)	neutral(0.404)	superfamily_SSF53474
ERCC5	2073	genome.wustl.edu	37	13	103515212	103515212	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000123.2	+1	reviewed	p.P571	0.007	120	0%	166	45.2%	20	50%	-	-	-	superfamily_PIN domain-like
EFNB2	1948	genome.wustl.edu	37	13	107145409	107145409	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004093.2	-1	reviewed	p.A327	0.896	54	0%	66	13.6%	8	0%	-	-	-	NULL
ARGLU1	55082	genome.wustl.edu	37	13	107196474	107196474	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018011.3	-1	validated	p.R231I	1.000	486	0%	504	46%	56	46.4%	possibly_damaging(0.681)	deleterious(0)	deleterious(0.688)	NULL
MYO16	23026	genome.wustl.edu	37	13	109859041	109859041	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015011.1	+1	validated	p.G1812R	0.000	86	0%	100	50%	0	-	benign(0)	tolerated(1)	-	NULL
COL4A1	1282	genome.wustl.edu	37	13	110804682	110804682	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001845.4	-1	reviewed	p.K1643E	1.000	19	0%	31	41.9%	438	5.4%	unknown(0)	tolerated(0.27)	-	HMMPfam_C4,HMMSmart_SM00111,superfamily_C-type lectin-like
CARS2	79587	genome.wustl.edu	37	13	111299581	111299581	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024537.2	-1	validated	p.D354N	0.997	30	0%	48	29.2%	102	42.1%	possibly_damaging(0.767)	tolerated(0.06)	deleterious(0.607)	HMMPfam_tRNA-synt_1e,superfamily_SSF52374
ING1	3621	genome.wustl.edu	37	13	111371951	111371951	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005537.3	+1	reviewed	p.G314D	0.988	22	0%	53	20.8%	90	2.2%	benign(0.002)	tolerated(0.62)	neutral(0.004)	NULL
TUBGCP3	10426	genome.wustl.edu	37	13	113143994	113143994	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006322.4	-1	provisional	p.T822	0.032	387	0%	492	45.9%	7	28.5%	-	-	-	NULL
F7	2155	genome.wustl.edu	37	13	113768252	113768252	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000131.3	+1	reviewed	p.F136	0.883	54	0%	92	43.5%	1	0%	-	-	-	HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_1
F10	2159	genome.wustl.edu	37	13	113793763	113793763	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000504.3	+1	reviewed	p.E117K	0.074	220	0%	288	46.2%	2	0%	benign(0.072)	tolerated(0.05)	neutral(0.350)	HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2
LOC100289447	100289447	genome.wustl.edu	37	13	113795101	113795101	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_002344234.1	-1	model	p.P460L	0.010	8	0.000	7	0.571	0	-	-	-	-	NULL
PCID2	55795	genome.wustl.edu	37	13	113845241	113845241	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001127202.1	-1	validated	p.L138	0.988	414	0%	522	41.2%	34	44.1%	-	-	-	NULL
PCID2	55795	genome.wustl.edu	37	13	113851512	113851512	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001127202.1	-1	validated	p.K82	0.995	135	0%	203	15.8%	42	11.9%	-	-	-	NULL
CUL4A	8451	genome.wustl.edu	37	13	113888220	113888220	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001008895.1	+1	validated	p.D229Y	1.000	323	0%	429	41.7%	7	28.5%	benign(0.001)	deleterious(0.03)	neutral(0.364)	HMMPfam_Cullin,superfamily_Cullin repeat
GRK1	6011	genome.wustl.edu	37	13	114321720	114321720	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000335678	+1	known	p.E7K	1.000	51	0%	71	56.3%	0	-	possibly_damaging(0.6)	tolerated(0.06)	deleterious(0.530)	NULL
GRK1	6011	genome.wustl.edu	37	13	114426094	114426094	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000335678	+1	known	p.G345*	0.935	50	0%	65	35.4%	3	66.6%	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
GAS6	2621	genome.wustl.edu	37	13	114523849	114523849	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000820.2	-1	reviewed	p.P675	0.001	14	0%	20	30%	372	47.3%	-	-	-	superfamily_ConA_like_lec_gl
CDC16	8881	genome.wustl.edu	37	13	115024965	115024965	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000417057	+1	known	p.R221Q	0.000	65	0%	98	44.9%	0	-	-	-	-	NULL
CDC16	8881	genome.wustl.edu	37	13	115030681	115030681	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001078645.1	+1	reviewed	p.I523	0.823	573	0%	642	43.5%	64	32.8%	-	-	-	superfamily_TPR-like
POTEG	404785	genome.wustl.edu	37	14	19553495	19553495	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001005356.2	+1	validated	p.W27R	0.043	124	0%	113	29.2%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
POTEG	404785	genome.wustl.edu	37	14	19571349	19571349	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001005356.2	+1	validated	p.E376	0.021	840	0%	911	18.6%	0	-	-	-	-	NULL
OR11H2	79334	genome.wustl.edu	37	14	20181330	20181330	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000334072	-1	known	p.R249I	0.350	366	0%	385	33.8%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR4N2	390429	genome.wustl.edu	37	14	20295790	20295790	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001004723.1	+1	provisional	p.F61L	1.000	413	0.5%	456	42.5%	0	-	benign(0.002)	deleterious(0.04)	neutral(0.349)	HMMPfam_7tm_1,superfamily_SSF81321
OR4K5	79317	genome.wustl.edu	37	14	20388949	20388949	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001005483.1	+1	provisional	p.L62I	0.244	298	0%	317	39.4%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_7tm_1,superfamily_SSF81321
OR11G2	390439	genome.wustl.edu	37	14	20665684	20665684	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001005503.1	+1	provisional	p.L64I	0.767	113	0%	183	45.4%	0	-	benign(0.184)	tolerated(0.33)	neutral(0.041)	superfamily_SSF81321
OR11H6	122748	genome.wustl.edu	37	14	20691971	20691971	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001004480.1	+1	provisional	p.F35V	1.000	130	0%	163	42.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF81321
CCNB1IP1	57820	genome.wustl.edu	37	14	20779716	20779716	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021178.3	-1	validated	p.R276I	1.000	148	0%	206	44.2%	24	45.8%	possibly_damaging(0.922)	deleterious(0)	deleterious(0.816)	NULL
TEP1	7011	genome.wustl.edu	37	14	20848445	20848445	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007110.4	-1	reviewed	p.Q1651R	0.082	520	0%	701	14.7%	5	0%	probably_damaging(0.978)	deleterious(0.01)	deleterious(0.826)	NULL
TEP1	7011	genome.wustl.edu	37	14	20872834	20872834	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007110.4	-1	reviewed	p.R323Q	1.000	40	0%	49	55.1%	5	20%	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	HMMPfam_TROVE
KLHL33	123103	genome.wustl.edu	37	14	20897515	20897515	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001109997.2	-1	validated	p.A285	0.019	137	0%	168	35.7%	0	-	-	-	-	HMMPfam_Kelch_1,HMMSmart_Kelch,superfamily_Gal_oxid_central
KLHL33	123103	genome.wustl.edu	37	14	20897989	20897989	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001109997.2	-1	validated	p.F202L	0.999	61	0%	59	30.5%	0	-	probably_damaging(0.991)	tolerated(0.67)	neutral(0.447)	HMMPfam_Kelch_1,HMMSmart_Kelch,superfamily_Gal_oxid_central
OSGEP	55644	genome.wustl.edu	37	14	20920533	20920533	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017807.2	-1	validated	p.S64A	1.000	162	0%	180	38.9%	32	59.3%	benign(0)	tolerated(1)	-	HMMPfam_Peptidase_M22,superfamily_SSF53067
RNASE10	338879	genome.wustl.edu	37	14	20978684	20978684	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001012975.1	+1	provisional	p.G18	0.991	213	0%	243	43.2%	1	100%	-	-	-	NULL
RNASE9	390443	genome.wustl.edu	37	14	21024857	21024857	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001001673.3	-1	provisional	p.K124N	0.998	152	0%	235	38.7%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	superfamily_RNase A-like
ARHGEF40	55701	genome.wustl.edu	37	14	21542446	21542446	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018071.3	+1	validated	p.F186S	1.000	35	0%	60	10%	8	0%	probably_damaging(0.958)	deleterious(0.02)	deleterious(0.784)	NULL
HNRNPC	3183	genome.wustl.edu	37	14	21681181	21681181	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001077442.1	-1	reviewed	p.R167Q	1.000	214	0%	248	45.2%	459	23.9%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
RPGRIP1	57096	genome.wustl.edu	37	14	21762910	21762910	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020366.3	+1	reviewed	p.R54C	0.994	179	0%	222	43.7%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
CHD8	57680	genome.wustl.edu	37	14	21859627	21859627	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020920.3	-1	reviewed	p.L2075I	1.000	71	0%	88	35.2%	44	45.4%	benign(0.004)	tolerated(0.16)	neutral(0.059)	HMMSmart_SM00592
TOX4	9878	genome.wustl.edu	37	14	21957407	21957407	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014828.2	+1	validated	p.D219Y	1.000	259	0%	285	43.9%	16	50%	possibly_damaging(0.882)	deleterious(0)	deleterious(0.789)	superfamily_HMG-box
METTL3	56339	genome.wustl.edu	37	14	21967676	21967676	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_019852.3	-1	reviewed	p.R471H	1.000	199	0%	254	45.3%	97	46.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MT-A70
METTL3	56339	genome.wustl.edu	37	14	21971488	21971488	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_019852.3	-1	reviewed	p.S184L	0.888	151	0%	165	43.6%	38	47.3%	benign(0)	tolerated(0.32)	neutral(0.024)	NULL
OR10G3	26533	genome.wustl.edu	37	14	22038399	22038399	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001005465.1	-1	validated	p.L159	0.996	89	0%	101	50.5%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
MMP14	4323	genome.wustl.edu	37	14	23313705	23313705	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004995.2	+1	reviewed	p.F379	0.995	104	0%	165	43%	147	12.2%	-	-	-	superfamily_Hemopexin-like domain,HMMPfam_Hemopexin,HMMSmart_SM00120
MMP14	4323	genome.wustl.edu	37	14	23314956	23314956	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004995.2	+1	reviewed	p.F486S	1.000	161	0%	222	37.4%	92	27.1%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_Hemopexin-like domain,HMMPfam_Hemopexin,HMMSmart_SM00120
PSMB5	5693	genome.wustl.edu	37	14	23504006	23504006	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002797.3	-1	reviewed	p.D29N	0.995	66	0%	69	42%	112	51.7%	benign(0.355)	tolerated(0.11)	neutral(0.384)	NULL
ACIN1	22985	genome.wustl.edu	37	14	23548098	23548098	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014977.3	-1	validated	p.V704	0.040	131	0%	185	45.4%	78	34.6%	-	-	-	NULL
BCL2L2	599	genome.wustl.edu	37	14	23777226	23777226	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004050.3	+1	reviewed	p.D84N	0.988	68	0%	62	43.5%	4	50%	benign(0.059)	tolerated(0.38)	neutral(0.022)	HMMPfam_Bcl-2,HMMSmart_SM00337,superfamily_Bcl-2 inhibitors of programmed cell death
EFS	10278	genome.wustl.edu	37	14	23829167	23829167	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005864.2	-1	reviewed	p.T174A	0.887	14	0%	10	60%	1	0%	benign(0)	tolerated(0.95)	-	NULL
MYH6	4624	genome.wustl.edu	37	14	23851750	23851750	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002471.3	-1	validated	p.L1895	1.000	197	0%	302	41.4%	0	-	-	-	-	HMMPfam_Myosin_tail_1
AP1G2	8906	genome.wustl.edu	37	14	24035052	24035052	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003917.2	-1	reviewed	p.S206	1.000	63	0%	103	36.9%	75	49.3%	-	-	-	HMMPfam_Adaptin_N,superfamily_ARM-type_fold
IPO4	79711	genome.wustl.edu	37	14	24649726	24649726	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024658.3	-1	validated	p.T1056	0.000	156	0%	232	43.5%	98	45.9%	-	-	-	NULL
GMPR2	51292	genome.wustl.edu	37	14	24706767	24706767	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016576.3	+1	validated	p.F250	1.000	310	0%	457	43.1%	120	55%	-	-	-	HMMPfam_IMPDH,superfamily_Inosine monophosphate dehydrogenase (IMPDH)
TGM1	7051	genome.wustl.edu	37	14	24731326	24731326	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000359.2	-1	reviewed	p.R78Q	0.007	22	0%	31	32.3%	0	-	possibly_damaging(0.867)	tolerated(0.59)	neutral(0.341)	superfamily_Ig_E-set
RIPK3	11035	genome.wustl.edu	37	14	24805590	24805590	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006871.3	-1	reviewed	p.V450I	0.000	66	0%	98	37.8%	11	36.3%	benign(0)	tolerated(0.94)	-	NULL
NFATC4	4776	genome.wustl.edu	37	14	24845666	24845666	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001136022.1	+1	reviewed	p.F804	0.999	94	0%	125	44.8%	4	0%	-	-	-	NULL
STXBP6	29091	genome.wustl.edu	37	14	25326244	25326244	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014178.6	-1	provisional	p.D92N	0.997	205	0%	271	15.5%	125	20%	benign(0.082)	tolerated(0.2)	neutral(0.055)	NULL
NOVA1	4857	genome.wustl.edu	37	14	26918108	26918108	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002515.2	-1	reviewed	p.V194G	1.000	144	0%	181	34.3%	0	-	probably_damaging(0.983)	deleterious(0)	deleterious(0.873)	HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I)
NOVA1	4857	genome.wustl.edu	37	14	27064628	27064628	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002515.2	-1	reviewed	p.D90N	1.000	388	0%	453	37.1%	0	-	unknown(0)	deleterious(0)	-	HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I)
PRKD1	5587	genome.wustl.edu	37	14	30100144	30100144	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002742.2	-1	validated	p.F492	1.000	241	0%	292	33.9%	4	25%	-	-	-	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
G2E3	55632	genome.wustl.edu	37	14	31050315	31050315	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017769.3	+1	validated	p.Q10H	0.986	126	0%	180	37.8%	0	-	benign(0.007)	deleterious(0.02)	neutral(0.383)	NULL
HECTD1	25831	genome.wustl.edu	37	14	31641083	31641083	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015382.2	-1	validated	p.R439I	1.000	284	0%	326	40.2%	8	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,superfamily_ARM repeat
HEATR5A	25938	genome.wustl.edu	37	14	31762726	31762726	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015473.2	-1	validated	p.L1683V	0.792	195	0%	232	53.9%	3	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM repeat
HEATR5A	25938	genome.wustl.edu	37	14	31762758	31762758	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015473.2	-1	validated	p.S1672Y	1.000	154	0%	187	36.9%	3	0%	benign(0)	deleterious(0.03)	neutral(0.364)	superfamily_ARM repeat
ARHGAP5	394	genome.wustl.edu	37	14	32562358	32562358	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001030055.1	+1	reviewed	p.R828Q	1.000	80	0%	106	39.6%	9	44.4%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
ARHGAP5	394	genome.wustl.edu	37	14	32624025	32624025	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001030055.1	+1	reviewed	p.I1460	0.989	110	0%	122	44.3%	19	52.6%	-	-	-	NULL
AKAP6	9472	genome.wustl.edu	37	14	33293481	33293481	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004274.4	+1	reviewed	p.C2154*	0.963	143	0%	220	40%	21	28.5%	-	-	-	NULL
NPAS3	64067	genome.wustl.edu	37	14	34266669	34266669	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_173159.2	+1	reviewed	p.P423	0.483	88	0%	121	50.4%	208	43.7%	-	-	-	HMMSmart_PAC
NPAS3	64067	genome.wustl.edu	37	14	34269091	34269091	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_173159.2	+1	reviewed	p.R513	1.000	51	0%	71	45.1%	264	51.1%	-	-	-	NULL
CFL2	1073	genome.wustl.edu	37	14	35182562	35182562	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021914.7	-1	reviewed	p.S70Y	1.000	259	0%	335	49%	10	30%	benign(0)	tolerated(1)	-	HMMPfam_Cofilin_ADF,HMMSmart_SM00102,superfamily_Actin depolymerizing proteins
MBIP	51562	genome.wustl.edu	37	14	36783805	36783805	+	Nonsense_Mutation	SNP	G	G	A	rs192945923	by1000genomes	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016586.2	-1	validated	p.R162*	0.998	184	0%	246	42.7%	1	100%	-	-	-	NULL
MIPOL1	145282	genome.wustl.edu	37	14	37739655	37739655	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_138731.5	+1	validated	p.E140*	1.000	111	0%	176	39.2%	0	-	-	-	-	NULL
PNN	5411	genome.wustl.edu	37	14	39650661	39650661	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002687.3	+1	validated	p.S583Y	0.993	351	0%	464	43.1%	163	41.7%	unknown(0)	deleterious(0)	-	NULL
CTAGE5	4253	genome.wustl.edu	37	14	39736714	39736714	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005930.3	+1	validated	p.E17D	0.009	33	0%	49	42.9%	1	0%	benign(0.315)	tolerated(0.26)	neutral(0.133)	NULL
LRFN5	145581	genome.wustl.edu	37	14	42356889	42356889	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152447.3	+1	validated	p.A354D	1.000	104	0%	107	50.5%	0	-	benign(0.004)	deleterious(0.04)	neutral(0.349)	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726
LRFN5	145581	genome.wustl.edu	37	14	42360856	42360856	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152447.3	+1	validated	p.E597K	1.000	111	0%	148	52%	0	-	benign(0.002)	tolerated(0.09)	neutral(0.296)	NULL
KLHL28	54813	genome.wustl.edu	37	14	45415035	45415035	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017658.3	-1	validated	p.E33K	1.000	90	0%	153	39.9%	13	53.8%	probably_damaging(0.999)	tolerated(0.25)	deleterious(0.527)	superfamily_POZ domain,HMMPfam_BTB
FAM179B	23116	genome.wustl.edu	37	14	45468622	45468622	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015091.2	+1	validated	p.S754P	1.000	293	0%	399	41.1%	3	33.3%	benign(0.195)	deleterious(0)	neutral(0.463)	superfamily_ARM repeat
FAM179B	23116	genome.wustl.edu	37	14	45478299	45478299	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015091.2	+1	validated	p.E1030*	1.000	164	0%	222	13.5%	0	-	-	-	-	superfamily_ARM repeat
FANCM	57697	genome.wustl.edu	37	14	45665536	45665536	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020937.2	+1	reviewed	p.I1834M	0.999	187	0%	254	48.4%	6	50%	possibly_damaging(0.466)	tolerated(0.19)	neutral(0.203)	HMMPfam_ERCC4,superfamily_Restriction endonuclease-like
MIS18BP1	55320	genome.wustl.edu	37	14	45696021	45696021	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018353.4	-1	validated	p.E589*	0.000	306	0%	380	40%	0	-	-	-	-	NULL
MIS18BP1	55320	genome.wustl.edu	37	14	45715977	45715977	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018353.4	-1	validated	p.K171N	0.051	469	0%	586	45.4%	2	50%	benign(0.071)	deleterious(0.05)	neutral(0.350)	NULL
MDGA2	161357	genome.wustl.edu	37	14	47530477	47530477	+	Silent	SNP	G	G	A	rs137900737	by1000genomes	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001113498.1	-1	validated	p.I431	0.996	132	0%	138	42.8%	0	-	-	-	-	superfamily_SSF48726
MDGA2	161357	genome.wustl.edu	37	14	47530617	47530617	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001113498.1	-1	validated	p.R385W	1.000	147	0%	213	45.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_IGc2,HMMPfam_ig,superfamily_SSF48726
ENSG00000248934	0	genome.wustl.edu	37	14	50089404	50089404	+	RNA	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000504161	-1	novel	NULL	0.102	23	0%	15	60%	2	100%	-	-	-	-
NEMF	9147	genome.wustl.edu	37	14	50251811	50251811	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004713.3	-1	validated	p.K1024N	1.000	218	0%	283	36%	8	12.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NEMF	9147	genome.wustl.edu	37	14	50262519	50262519	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004713.3	-1	validated	p.R870Q	0.997	388	0.3%	490	51.8%	2	100%	probably_damaging(0.974)	deleterious(0.04)	deleterious(0.765)	NULL
NEMF	9147	genome.wustl.edu	37	14	50262615	50262615	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004713.3	-1	validated	p.A838V	0.001	646	0%	781	20.5%	2	0%	benign(0)	tolerated(0.34)	neutral(0.023)	NULL
SOS2	6655	genome.wustl.edu	37	14	50596707	50596707	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006939.2	-1	validated	p.I1117	1.000	192	0%	215	41.9%	7	14.2%	-	-	-	NULL
SOS2	6655	genome.wustl.edu	37	14	50649283	50649283	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006939.2	-1	validated	p.E252D	1.000	201	0%	203	47.8%	1	100%	benign(0.309)	tolerated(0.32)	neutral(0.120)	HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_DH-domain
ATP5S	27109	genome.wustl.edu	37	14	50790814	50790814	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001003803.1	+1	reviewed	p.I171	0.993	103	0%	164	43.3%	4	50%	-	-	-	superfamily_RNI-like
CDKL1	8814	genome.wustl.edu	37	14	50862481	50862481	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004196.3	-1	reviewed	p.L37M	1.000	266	0%	306	45.1%	1	0%	benign(0.421)	tolerated(0.22)	neutral(0.179)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
NIN	51199	genome.wustl.edu	37	14	51204874	51204874	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020921.3	-1	reviewed	p.S1920Y	0.529	457	0%	591	43.7%	9	55.5%	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	NULL
TRIM9	114088	genome.wustl.edu	37	14	51475876	51475876	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015163.5	-1	reviewed	p.T410A	1.000	169	0%	228	45.2%	1	0%	benign(0.017)	tolerated(0.21)	neutral(0.044)	NULL
C14orf166	51637	genome.wustl.edu	37	14	52460504	52460504	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016039.2	+1	validated	p.L84I	1.000	480	0%	697	50.9%	72	47.2%	probably_damaging(1)	tolerated(0.16)	deleterious(0.559)	HMMPfam_RLL
NID2	22795	genome.wustl.edu	37	14	52520399	52520399	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007361.3	-1	validated	p.E443*	0.046	122	0%	157	42%	1	0%	-	-	-	NULL
PTGDR	5729	genome.wustl.edu	37	14	52735026	52735026	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000953.2	+1	reviewed	p.A165V	0.978	50	0%	69	42%	0	-	probably_damaging(0.99)	tolerated(0.4)	neutral(0.458)	HMMPfam_7tm_1,superfamily_SSF81321
DDHD1	80821	genome.wustl.edu	37	14	53529876	53529876	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_030637.2	-1	validated	p.F517L	1.000	106	0%	141	45.4%	5	60%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
DDHD1	80821	genome.wustl.edu	37	14	53619598	53619598	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_030637.2	-1	validated	p.D73	0.404	22	0%	28	42.9%	1	100%	-	-	-	NULL
SAMD4A	23034	genome.wustl.edu	37	14	55168990	55168990	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015589.4	+1	validated	p.S135L	1.000	84	0%	96	45.8%	3	0%	benign(0.123)	tolerated(0.11)	neutral(0.282)	NULL
WDHD1	11169	genome.wustl.edu	37	14	55467296	55467296	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007086.2	-1	reviewed	p.S289	0.791	285	0.4%	428	43.9%	4	50%	-	-	-	HMMSmart_WD40,superfamily_WD40_like
MAPK1IP1L	93487	genome.wustl.edu	37	14	55529678	55529678	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_144578.3	+1	validated	p.M121V	1.000	80	0%	101	39.6%	126	46%	benign(0.024)	tolerated(0.61)	neutral(0.005)	NULL
DLGAP5	9787	genome.wustl.edu	37	14	55625286	55625286	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014750.4	-1	validated	p.F609	1.000	266	0.4%	259	45.9%	3	66.6%	-	-	-	NULL
KTN1	3895	genome.wustl.edu	37	14	56078896	56078896	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001079521.1	+1	validated	p.E44*	1.000	91	0%	133	30.1%	0	-	-	-	-	NULL
KTN1	3895	genome.wustl.edu	37	14	56106692	56106692	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001079521.1	+1	validated	p.R629C	1.000	229	0%	300	41.3%	14	42.8%	benign(0.397)	deleterious(0.03)	deleterious(0.492)	NULL
PELI2	57161	genome.wustl.edu	37	14	56757108	56757108	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021255.2	+1	validated	p.E210D	1.000	80	0%	131	16.8%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pellino
C14orf101	54916	genome.wustl.edu	37	14	57084006	57084006	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017799.3	+1	validated	p.F349	1.000	359	0%	457	42%	4	0%	-	-	-	NULL
C14orf101	54916	genome.wustl.edu	37	14	57114014	57114014	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017799.3	+1	validated	p.K641N	1.000	51	0%	73	35.6%	13	53.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MUDENG	55745	genome.wustl.edu	37	14	57741393	57741393	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018229.3	+1	validated	p.F169S	1.000	84	0%	71	15.5%	4	25%	probably_damaging(0.979)	deleterious(0.01)	deleterious(0.828)	NULL
ARID4A	5926	genome.wustl.edu	37	14	58831208	58831208	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002892.3	+1	reviewed	p.D801Y	1.000	27	0%	32	56.2%	0	-	probably_damaging(1)	tolerated(0.3)	deleterious(0.528)	NULL
KIAA0586	9786	genome.wustl.edu	37	14	58910702	58910702	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014749.3	+1	validated	p.S206A	1.000	72	0%	72	48.6%	2	50%	possibly_damaging(0.808)	tolerated(0.47)	neutral(0.315)	NULL
KIAA0586	9786	genome.wustl.edu	37	14	58923419	58923419	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014749.3	+1	validated	e10-1	0.434	158	0%	213	38%	0	-	-	-	-	-
KIAA0586	9786	genome.wustl.edu	37	14	58953837	58953837	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014749.3	+1	validated	p.S1010L	0.995	341	0%	438	44.3%	7	28.5%	probably_damaging(0.98)	deleterious(0.01)	deleterious(0.830)	NULL
DAAM1	23002	genome.wustl.edu	37	14	59789890	59789890	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014992.1	+1	reviewed	p.L241M	1.000	53	0%	60	51.7%	4	75%	unknown(0)	deleterious(0)	-	HMMPfam_Drf_FH3
DAAM1	23002	genome.wustl.edu	37	14	59797330	59797330	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014992.1	+1	reviewed	p.E495G	1.000	137	0%	184	42.9%	6	0%	unknown(0)	deleterious(0.01)	-	NULL
JKAMP	51528	genome.wustl.edu	37	14	59953436	59953436	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016475.3	+1	validated	p.D4N	1.000	345	0%	379	43%	4	100%	probably_damaging(0.954)	tolerated(0.07)	deleterious(0.717)	NULL
JKAMP	51528	genome.wustl.edu	37	14	59970724	59970724	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016475.3	+1	validated	p.F290L	1.000	292	0%	382	12.6%	12	16.6%	probably_damaging(0.998)	tolerated(0.08)	deleterious(0.774)	HMMPfam_DUF766
RTN1	6252	genome.wustl.edu	37	14	60194163	60194163	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021136.2	-1	reviewed	p.I413	0.039	3	0.000	10	0.500	2	100%	-	-	-	NULL
RTN1	6252	genome.wustl.edu	37	14	60213146	60213146	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021136.2	-1	reviewed	p.D99Y	0.009	31	0%	48	45.8%	1	0%	possibly_damaging(0.716)	deleterious(0)	deleterious(0.704)	NULL
C14orf135	64430	genome.wustl.edu	37	14	60585059	60585059	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_022495.5	+1	validated	p.R297C	0.952	99	0%	145	43.4%	8	37.5%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
C14orf135	64430	genome.wustl.edu	37	14	60585186	60585186	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_022495.5	+1	validated	p.S339Y	0.998	286	0%	388	43.6%	39	53.8%	benign(0.08)	tolerated(0.11)	neutral(0.277)	NULL
C14orf135	64430	genome.wustl.edu	37	14	60591437	60591437	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_022495.5	+1	validated	p.N616H	0.000	11	0%	24	58.3%	16	62.5%	benign(0.002)	tolerated(0.15)	neutral(0.241)	NULL
PPM1A	5494	genome.wustl.edu	37	14	60712596	60712596	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_177952.2	+1	reviewed	p.E11*	0.034	355	0%	398	44%	0	-	-	-	-	NULL
PPM1A	5494	genome.wustl.edu	37	14	60752349	60752349	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_177952.2	+1	reviewed	p.R354Q	1.000	141	0%	182	26.4%	69	18.8%	possibly_damaging(0.856)	deleterious(0.02)	deleterious(0.714)	HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMPfam_PP2C
SIX4	51804	genome.wustl.edu	37	14	61180639	61180639	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017420.4	-1	reviewed	p.L611S	0.992	147	0%	164	47%	13	76.9%	possibly_damaging(0.722)	deleterious(0)	deleterious(0.707)	NULL
PRKCH	5583	genome.wustl.edu	37	14	62014472	62014472	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006255.3	+1	reviewed	p.K591N	1.000	53	0%	60	38.3%	17	35.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
HIF1A	3091	genome.wustl.edu	37	14	62187119	62187119	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001530.3	+1	validated	p.K19Q	1.000	226	0%	262	34.7%	10	0%	possibly_damaging(0.952)	deleterious(0)	deleterious(0.840)	superfamily_HLH helix-loop-helix DNA-binding domain
HIF1A	3091	genome.wustl.edu	37	14	62211442	62211442	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001530.3	+1	validated	p.E705*	1.000	110	0%	110	49.1%	64	9.3%	-	-	-	NULL
GPHB5	122876	genome.wustl.edu	37	14	63779831	63779831	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_145171.2	-1	validated	e2-1	1.000	222	0.5%	320	42.2%	0	-	-	-	-	-
SYNE2	23224	genome.wustl.edu	37	14	64434460	64434460	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_182914.2	+1	reviewed	p.E342*	1.000	225	0%	285	39.3%	1	0%	-	-	-	superfamily_Spectrin
SYNE2	23224	genome.wustl.edu	37	14	64596828	64596828	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_182914.2	+1	reviewed	p.F4734	0.000	201	0%	234	40.2%	2	100%	-	-	-	NULL
ESR2	2100	genome.wustl.edu	37	14	64716388	64716388	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001437.2	-1	reviewed	p.G367	0.996	204	0%	269	39%	0	-	probably_damaging(0.989)	tolerated(0.11)	deleterious(0.711)	HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain
PPP1R36	145376	genome.wustl.edu	37	14	65053591	65053591	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_172365.1	+1	predicted	p.F235L	1.000	343	0.3%	444	45.7%	2	50%	possibly_damaging(0.873)	tolerated(0.23)	neutral(0.381)	NULL
SPTB	6710	genome.wustl.edu	37	14	65246625	65246625	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001024858.2	-1	reviewed	p.R1431*	1.000	81	0%	143	42%	0	-	-	-	-	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
GPX2	2877	genome.wustl.edu	37	14	65406338	65406338	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002083.2	-1	reviewed	p.R147	1.000	135	0%	203	43.8%	0	-	-	-	-	superfamily_Thioredoxin-like
FUT8	2530	genome.wustl.edu	37	14	66083023	66083023	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_178154.1	+1	reviewed	p.K138N	0.995	110	0%	138	46.4%	1	0%	benign(0.148)	deleterious(0.05)	neutral(0.358)	NULL
VTI1B	10490	genome.wustl.edu	37	14	68126569	68126569	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006370.2	-1	validated	p.R82Q	1.000	153	0%	227	47.1%	175	48.5%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_V-SNARE
RDH12	145226	genome.wustl.edu	37	14	68195907	68195907	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152443.2	+1	reviewed	e6-1	1.000	28	0%	46	15.2%	1	100%	-	-	-	-
ACTN1	87	genome.wustl.edu	37	14	69352207	69352207	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001130004.1	-1	reviewed	p.F440	0.973	103	0%	128	46.9%	245	39.5%	-	-	-	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
DCAF5	8816	genome.wustl.edu	37	14	69520589	69520589	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003861.2	-1	validated	p.K938N	1.000	57	0%	57	24.6%	3	33.3%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
DCAF5	8816	genome.wustl.edu	37	14	69521610	69521610	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003861.2	-1	validated	p.K598T	0.993	302	0%	317	43.2%	36	44.4%	benign(0.026)	deleterious(0)	neutral(0.446)	NULL
EXD2	55218	genome.wustl.edu	37	14	69701577	69701577	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018199.2	+1	provisional	p.R168Q	1.000	198	0%	315	27.3%	10	0%	possibly_damaging(0.95)	tolerated(0.37)	neutral(0.413)	NULL
ERH	2079	genome.wustl.edu	37	14	69847354	69847354	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004450.2	-1	validated	p.Y72	1.000	191	0%	226	42.9%	501	48.9%	-	-	-	HMMPfam_ER
SRSF5	6430	genome.wustl.edu	37	14	70234964	70234964	+	Silent	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001039465.1	+1	validated	p.R31	1.000	451	0%	487	46.6%	220	50.4%	-	-	-	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
SMOC1	64093	genome.wustl.edu	37	14	70461161	70461161	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001034852.1	+1	validated	p.D210Y	1.000	558	0%	688	47.1%	0	-	probably_damaging(0.972)	deleterious(0.01)	deleterious(0.820)	superfamily_Thyroglobulin type-1 domain
ADAM21	8747	genome.wustl.edu	37	14	70925033	70925033	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003813.2	+1	reviewed	p.E273*	0.002	109	0%	116	31.9%	0	-	-	-	-	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"
ADAM20	8748	genome.wustl.edu	37	14	70989610	70989610	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003814.4	-1	reviewed	p.R672H	0.000	232	0%	332	41%	0	-	benign(0.004)	tolerated(0.82)	neutral(0.001)	HMMSmart_SM00608
ADAM20	8748	genome.wustl.edu	37	14	70990657	70990657	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003814.4	-1	reviewed	p.D323G	0.000	131	0%	152	38.8%	0	-	benign(0.002)	tolerated(0.56)	neutral(0.006)	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"
PCNX	22990	genome.wustl.edu	37	14	71444033	71444033	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014982.2	+1	validated	p.E327*	1.000	148	0%	124	48.4%	0	-	-	-	-	NULL
RGS6	9628	genome.wustl.edu	37	14	72921274	72921274	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004296.4	+1	validated	p.I75L	0.991	328	0%	406	44.1%	1	0%	benign(0.001)	deleterious(0.01)	neutral(0.406)	"HMMPfam_DEP,HMMSmart_SM00049,superfamily_""Winged helix"" DNA-binding domain"
DCAF4	26094	genome.wustl.edu	37	14	73409754	73409754	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015604.3	+1	reviewed	p.R162*	1.000	124	0%	170	35.3%	5	0%	-	-	-	superfamily_WD40 repeat-like
PAPLN	89932	genome.wustl.edu	37	14	73718447	73718447	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_173462.3	+1	validated	p.A222V	1.000	20	0%	17	47.1%	0	-	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	HMMPfam_ADAM_spacer1
PAPLN	89932	genome.wustl.edu	37	14	73731335	73731335	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_173462.3	+1	validated	p.R982H	0.014	35	0%	46	43.5%	8	50%	benign(0.001)	tolerated(0.34)	neutral(0.023)	NULL
ZNF410	57862	genome.wustl.edu	37	14	74371613	74371613	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021188.1	+1	provisional	p.R247H	1.000	92	0%	94	44.7%	33	42.4%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	superfamily_C2H2 and C2HC zinc fingers
ABCD4	5826	genome.wustl.edu	37	14	74764641	74764641	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005050.3	-1	reviewed	p.I139	1.000	105	0%	149	42.3%	41	9.7%	-	-	-	HMMPfam_ABC_membrane_2,superfamily_ABC_TM_1
KIAA0317	9870	genome.wustl.edu	37	14	75137550	75137550	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001039479.1	-1	validated	p.R508Q	1.000	148	0%	204	24.5%	13	7.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
KIAA0317	9870	genome.wustl.edu	37	14	75138187	75138187	+	Splice_Site	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001039479.1	-1	validated	e10-1	1.000	138	0%	173	46.8%	0	-	-	-	-	-
KIAA0317	9870	genome.wustl.edu	37	14	75151317	75151317	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001039479.1	-1	validated	p.R28H	1.000	73	0%	70	10%	12	16.6%	probably_damaging(0.998)	deleterious(0.05)	deleterious(0.820)	NULL
YLPM1	56252	genome.wustl.edu	37	14	75302093	75302093	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_019589.2	+1	validated	p.L2140	1.000	169	0%	234	19.7%	36	33.3%	-	-	-	NULL
DLST	1743	genome.wustl.edu	37	14	75357796	75357796	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001933.4	+1	validated	p.I123T	1.000	147	0%	175	51.4%	48	41.6%	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	HMMPfam_Biotin_lipoyl,PatternScan_LIPOYL,superfamily_Single hybrid motif
DLST	1743	genome.wustl.edu	37	14	75366634	75366634	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001933.4	+1	validated	p.D304N	1.000	206	0%	305	43.6%	60	38.3%	possibly_damaging(0.914)	tolerated(0.16)	neutral(0.425)	HMMPfam_2-oxoacid_dh,superfamily_CoA-dependent acyltransferases
PGF	5228	genome.wustl.edu	37	14	75415216	75415216	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002632.4	-1	validated	p.E129G	0.997	48	0%	51	49%	2	0%	probably_damaging(0.977)	deleterious(0)	deleterious(0.863)	HMMPfam_PDGF,HMMSmart_SM00141,superfamily_Cystine-knot cytokines
MLH3	27030	genome.wustl.edu	37	14	75515074	75515074	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001040108.1	-1	reviewed	p.E429*	0.001	162	0%	201	39.8%	0	-	-	-	-	NULL
ZC2HC1C	79696	genome.wustl.edu	37	14	75544267	75544267	+	Nonstop_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024643.2	+1	validated	p.*457Y	1.000	100	0%	146	45.9%	2	0%	-	-	-	NULL
TGFB3	7043	genome.wustl.edu	37	14	76429781	76429781	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003239.2	-1	reviewed	p.K268N	1.000	97	0%	162	41.4%	7	42.8%	benign(0.341)	tolerated(0.12)	neutral(0.368)	NULL
TGFB3	7043	genome.wustl.edu	37	14	76437909	76437909	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003239.2	-1	reviewed	p.E169K	1.000	63	0%	109	48.6%	12	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TGFb_propeptide
IFT43	112752	genome.wustl.edu	37	14	76455293	76455293	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_052873.2	+1	validated	p.K40N	0.997	172	0%	179	41.3%	54	44.4%	probably_damaging(0.996)	tolerated(0.23)	deleterious(0.503)	NULL
C14orf118	55668	genome.wustl.edu	37	14	76638194	76638194	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017926.2	+1	validated	p.E246K	1.000	218	0%	260	43.5%	15	53.3%	possibly_damaging(0.882)	deleterious(0)	deleterious(0.789)	NULL
ANGEL1	23357	genome.wustl.edu	37	14	77269806	77269806	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015305.3	-1	validated	p.R509Q	1.000	88	0%	105	18.1%	17	5.8%	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	HMMPfam_Exo_endo_phos,superfamily_Exo_endo_phos
C14orf166B	145497	genome.wustl.edu	37	14	77304288	77304288	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_194287.2	+1	validated	p.S190F	0.443	269	0%	376	42%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00368,superfamily_RNI-like
SAMD15	161394	genome.wustl.edu	37	14	77845047	77845047	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001010860.1	+1	provisional	p.K429T	0.001	78	0%	120	45%	0	-	probably_damaging(0.991)	deleterious(0.04)	deleterious(0.793)	NULL
ALKBH1	8846	genome.wustl.edu	37	14	78161164	78161164	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006020.2	-1	reviewed	p.Q124H	1.000	238	0%	308	39.9%	6	16.6%	possibly_damaging(0.91)	tolerated(0.12)	deleterious(0.623)	NULL
NRXN3	9369	genome.wustl.edu	37	14	79175735	79175735	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004796.4	+1	reviewed	p.K93T	1.000	135	0%	154	43.5%	0	-	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	superfamily_ConA_like_lec_gl
SEL1L	6400	genome.wustl.edu	37	14	81952724	81952724	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005065.4	-1	validated	p.G569	0.000	154	0%	235	46.4%	30	20%	-	-	-	superfamily_HCP-like
KCNK10	54207	genome.wustl.edu	37	14	88693812	88693812	+	Silent	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_138317.2	-1	reviewed	p.G196	1.000	190	0%	229	40.2%	0	-	-	-	-	HMMPfam_Ion_trans_2,superfamily_Voltage-gated potassium channels
SPATA7	55812	genome.wustl.edu	37	14	88899489	88899489	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018418.4	+1	reviewed	p.L365M	0.998	330	0.3%	370	15.7%	1	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
EML5	161436	genome.wustl.edu	37	14	89083113	89083113	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_183387.2	-1	validated	p.F1918S	1.000	117	0%	161	34.2%	0	-	probably_damaging(0.998)	tolerated(0.48)	deleterious(0.485)	HMMSmart_SM00320,superfamily_WD40 repeat-like
EML5	161436	genome.wustl.edu	37	14	89153590	89153590	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_183387.2	-1	validated	p.K942Q	1.000	223	0.4%	230	42.6%	0	-	probably_damaging(0.956)	tolerated(0.1)	deleterious(0.686)	superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase
EML5	161436	genome.wustl.edu	37	14	89172631	89172631	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_183387.2	-1	validated	p.L599	0.955	193	0%	226	33.6%	0	-	-	-	-	superfamily_WD40 repeat-like
TTC8	123016	genome.wustl.edu	37	14	89336429	89336429	+	Silent	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_144596.2	+1	reviewed	p.A312	0.865	176	0%	172	45.9%	8	62.5%	-	-	-	HMMPfam_TPR_1,HMMSmart_TPR,superfamily_SSF48452
PSMC1	5700	genome.wustl.edu	37	14	90729736	90729736	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002802.2	+1	reviewed	p.E77*	1.000	185	0%	197	40.6%	7	0%	-	-	-	NULL
PSMC1	5700	genome.wustl.edu	37	14	90730437	90730437	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002802.2	+1	reviewed	p.V173A	1.000	273	0%	345	43.8%	28	0%	benign(0.07)	tolerated(0.07)	neutral(0.324)	NULL
TTC7B	145567	genome.wustl.edu	37	14	91121428	91121428	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001010854.1	-1	provisional	p.K456	0.995	163	0%	263	12.2%	10	30%	-	-	-	superfamily_TPR-like
RPS6KA5	9252	genome.wustl.edu	37	14	91341579	91341579	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004755.2	-1	validated	p.K654N	1.000	195	0%	246	45.5%	2	100%	benign(0.001)	tolerated(1)	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
RPS6KA5	9252	genome.wustl.edu	37	14	91356927	91356927	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004755.2	-1	validated	p.K580N	1.000	172	0%	261	44.4%	8	50%	benign(0.099)	tolerated(0.24)	neutral(0.045)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
RPS6KA5	9252	genome.wustl.edu	37	14	91467480	91467480	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004755.2	-1	validated	p.K43Q	1.000	211	0%	245	50.6%	1	100%	possibly_damaging(0.653)	deleterious(0)	deleterious(0.674)	superfamily_Kinase_like
C14orf159	80017	genome.wustl.edu	37	14	91636380	91636380	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001102368.1	+1	validated	p.F97	0.005	67	0%	88	37.5%	22	54.5%	-	-	-	NULL
GPR68	8111	genome.wustl.edu	37	14	91700887	91700887	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003485.3	-1	validated	p.R180C	0.997	48	0%	43	44.2%	11	27.2%	possibly_damaging(0.943)	deleterious(0.05)	deleterious(0.733)	HMMPfam_7tm_1,superfamily_SSF81321
TRIP11	9321	genome.wustl.edu	37	14	92454680	92454680	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004239.3	-1	reviewed	p.L1736	0.964	291	0%	310	47.7%	5	80%	-	-	-	NULL
TRIP11	9321	genome.wustl.edu	37	14	92470820	92470820	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004239.3	-1	reviewed	p.R1167Q	0.999	120	0%	180	43.9%	6	50%	probably_damaging(0.997)	tolerated(0.17)	deleterious(0.525)	NULL
TRIP11	9321	genome.wustl.edu	37	14	92506016	92506016	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004239.3	-1	reviewed	p.L5R	0.990	66	0%	75	45.3%	3	66.6%	unknown(0)	deleterious(0.03)	-	NULL
ATXN3	4287	genome.wustl.edu	37	14	92548704	92548704	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004993.5	-1	reviewed	p.E239*	1.000	255	0%	401	39.2%	11	0%	-	-	-	HMMPfam_UIM,HMMSmart_SM00726
GOLGA5	9950	genome.wustl.edu	37	14	93264045	93264045	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005113.2	+1	reviewed	p.S88F	0.221	220	0%	279	43.4%	11	54.5%	possibly_damaging(0.908)	deleterious(0.02)	deleterious(0.744)	NULL
ITPK1	3705	genome.wustl.edu	37	14	93460273	93460273	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001142593.1	-1	validated	p.R106C	1.000	172	0%	228	46.9%	187	47%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ins134_P3_kin,superfamily_Glutathione synthetase ATP-binding domain-like
ITPK1	3705	genome.wustl.edu	37	14	93581508	93581508	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001142593.1	-1	validated	p.M1V	1.000	66	0%	96	42.7%	16	37.5%	possibly_damaging(0.882)	deleterious(0)	deleterious(0.789)	HMMPfam_Ins134_P3_kin
MOAP1	64112	genome.wustl.edu	37	14	93649666	93649666	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_022151.4	-1	reviewed	p.R308C	0.000	110	0%	115	42.6%	15	53.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
UBR7	55148	genome.wustl.edu	37	14	93678411	93678411	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_175748.3	+1	validated	p.N127D	1.000	305	0%	319	49.5%	13	23%	probably_damaging(0.998)	tolerated(0.06)	deleterious(0.797)	NULL
BTBD7	55727	genome.wustl.edu	37	14	93720017	93720017	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001002860.2	-1	validated	p.F576L	1.000	228	0%	282	31.2%	14	42.8%	probably_damaging(0.987)	deleterious(0.04)	deleterious(0.785)	NULL
FAM181A	90050	genome.wustl.edu	37	14	94391672	94391672	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_138344.3	+1	predicted	p.N19H	0.000	117	0%	152	33.6%	0	-	benign(0.095)	-	-	NULL
ASB2	51676	genome.wustl.edu	37	14	94420691	94420691	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016150.3	-1	reviewed	p.Q102H	0.994	59	0%	72	16.7%	2	0%	possibly_damaging(0.682)	tolerated(0.25)	neutral(0.280)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
PPP4R4	57718	genome.wustl.edu	37	14	94703942	94703942	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_058237.1	+1	reviewed	p.E258*	1.000	332	0%	412	17.2%	0	-	-	-	-	HMMPfam_HEAT,superfamily_ARM repeat
SERPINA2	390502	genome.wustl.edu	37	14	94833021	94833021	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000238576	-1	known	p.V5	0.001	6	0.000	20	0.450	0	-	-	-	-	superfamily_Serpins
SERPINA12	145264	genome.wustl.edu	37	14	94956017	94956017	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_173850.2	-1	provisional	p.I331	0.734	172	0%	186	40.3%	0	-	-	-	-	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
SERPINA12	145264	genome.wustl.edu	37	14	94962816	94962816	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_173850.2	-1	provisional	p.N267H	0.012	210	0%	280	45%	0	-	benign(0.007)	deleterious(0)	neutral(0.445)	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
SERPINA5	5104	genome.wustl.edu	37	14	95057113	95057113	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000624.4	+1	validated	p.F306L	1.000	153	0%	130	43.1%	341	59.5%	possibly_damaging(0.912)	tolerated(0.26)	neutral(0.397)	HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins
DICER1	23405	genome.wustl.edu	37	14	95560357	95560357	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_030621.3	-1	reviewed	p.I1744	1.000	183	0%	231	39%	8	50%	-	-	-	HMMPfam_Ribonuclease_3,HMMSmart_RIBOc,superfamily_RNase_III
DICER1	23405	genome.wustl.edu	37	14	95560476	95560476	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_030621.3	-1	reviewed	p.E1705K	1.000	94	0%	119	37.8%	5	40%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMPfam_Ribonuclease_3,HMMSmart_RIBOc,PatternScan_RNASE_3_1,superfamily_RNase_III
DICER1	23405	genome.wustl.edu	37	14	95590887	95590887	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_030621.3	-1	reviewed	p.H341P	1.000	189	0%	257	11.7%	1	100%	benign(0.273)	tolerated(0.06)	neutral(0.352)	superfamily_SSF52540
CLMN	79789	genome.wustl.edu	37	14	95670090	95670090	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024734.3	-1	validated	p.T532	0.000	168	0%	210	46.7%	10	50%	-	-	-	NULL
C14orf49	161176	genome.wustl.edu	37	14	95923561	95923561	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152592.3	-1	validated	p.G248W	0.996	73	0%	78	39.7%	2	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00150,superfamily_Spectrin repeat
ATG2B	55102	genome.wustl.edu	37	14	96769484	96769484	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018036.5	-1	validated	p.R1651*	1.000	203	0%	280	45.7%	0	-	-	-	-	NULL
ATG2B	55102	genome.wustl.edu	37	14	96788903	96788903	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018036.5	-1	validated	p.R904C	1.000	115	0%	169	41.4%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
AK7	122481	genome.wustl.edu	37	14	96922741	96922741	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152327.2	+1	validated	p.E386*	0.001	340	0.3%	417	48.7%	6	0%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
PAPOLA	10914	genome.wustl.edu	37	14	97018865	97018865	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032632.3	+1	validated	p.D524N	1.000	185	0%	252	11.9%	230	21.3%	benign(0.15)	tolerated(0.08)	neutral(0.313)	NULL
VRK1	7443	genome.wustl.edu	37	14	97319191	97319191	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003384.2	+1	reviewed	p.R133H	1.000	209	0%	219	44.3%	10	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Kinase_like
EML1	2009	genome.wustl.edu	37	14	100361038	100361038	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001008707.1	+1	reviewed	p.S226Y	0.881	263	0%	321	20.2%	7	0%	benign(0.115)	deleterious(0.01)	neutral(0.415)	HMMPfam_HELP
EML1	2009	genome.wustl.edu	37	14	100406398	100406398	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001008707.1	+1	reviewed	p.L818	1.000	91	0%	119	27.7%	16	18.7%	-	-	-	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
BEGAIN	57596	genome.wustl.edu	37	14	101004654	101004654	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020836.3	-1	validated	p.E478D	1.000	4	0.000	15	0.533	1	0%	possibly_damaging(0.712)	tolerated(0.07)	deleterious(0.577)	NULL
ENSG00000207208	0	genome.wustl.edu	37	14	102269569	102269569	+	RNA	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000384479	+1	novel	NULL	0.134	16	0%	33	30.3%	0	-	-	-	-	-
DYNC1H1	1778	genome.wustl.edu	37	14	102446827	102446827	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001376.4	+1	reviewed	p.L301M	0.990	129	0%	140	46.4%	4	50%	probably_damaging(0.986)	tolerated(0.24)	deleterious(0.472)	HMMPfam_DHC_N1
DYNC1H1	1778	genome.wustl.edu	37	14	102483726	102483726	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001376.4	+1	reviewed	p.E2688K	1.000	203	0%	268	42.9%	27	37%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_AAA,HMMPfam_AAA_5,superfamily_SSF52540
WDR20	91833	genome.wustl.edu	37	14	102675122	102675122	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_181291.1	+1	reviewed	p.K205N	1.000	58	0%	115	41.7%	4	50%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	superfamily_WD40_like
TECPR2	9895	genome.wustl.edu	37	14	102964031	102964031	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014844.3	+1	validated	p.I1352M	0.848	4	0.000	11	0.545	7	28.5%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMPfam_Hyd_WA,HMMSmart_TECPR
TRAF3	7187	genome.wustl.edu	37	14	103338304	103338304	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003300.2	+1	reviewed	p.K99T	1.000	565	0%	684	40.6%	1	0%	possibly_damaging(0.92)	deleterious(0.04)	deleterious(0.720)	superfamily_SSF57850
CDC42BPB	9578	genome.wustl.edu	37	14	103447163	103447163	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006035.3	-1	reviewed	p.S363C	1.000	111	0%	174	39.7%	28	46.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_S_TK_X,superfamily_Kinase_like,HMMPfam_Pkinase_C
TNFAIP2	7127	genome.wustl.edu	37	14	103596438	103596438	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006291.2	+1	reviewed	p.E359K	1.000	20	0%	29	48.3%	274	36.1%	probably_damaging(1)	tolerated(0.38)	deleterious(0.517)	HMMPfam_Sec6
MARK3	4140	genome.wustl.edu	37	14	103918266	103918266	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001128918.1	+1	validated	p.E120K	1.000	374	0%	422	37.4%	7	28.5%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
MARK3	4140	genome.wustl.edu	37	14	103969264	103969264	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001128918.1	+1	validated	p.K654N	0.668	102	0%	123	36.6%	143	48.9%	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	superfamily_Kinase associated domain 1 KA1
KLC1	3831	genome.wustl.edu	37	14	104153528	104153528	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001130107.1	+1	reviewed	p.E587	0.990	107	0%	144	45.1%	24	54.1%	-	-	-	NULL
AKT1	207	genome.wustl.edu	37	14	105237116	105237116	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001014431.1	-1	reviewed	p.T443	0.761	211	0%	240	44.2%	645	45.1%	-	-	-	HMMSmart_SM00133,HMMPfam_Pkinase_C
AHNAK2	113146	genome.wustl.edu	37	14	105407697	105407697	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_138420.2	-1	validated	p.S4697	0.000	108	0%	103	45.6%	0	-	-	-	-	NULL
AHNAK2	113146	genome.wustl.edu	37	14	105408302	105408302	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_138420.2	-1	validated	p.D4496N	0.016	203	0%	286	43.7%	26	42.3%	probably_damaging(0.959)	tolerated(0.12)	deleterious(0.663)	NULL
AHNAK2	113146	genome.wustl.edu	37	14	105409958	105409958	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_138420.2	-1	validated	p.K3944Q	0.000	238	0%	315	49.2%	8	37.5%	probably_damaging(0.965)	tolerated(0.1)	deleterious(0.694)	NULL
AHNAK2	113146	genome.wustl.edu	37	14	105412137	105412137	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_138420.2	-1	validated	p.L3217	0.000	93	0%	119	73.9%	4	75%	-	-	-	NULL
BRF1	2972	genome.wustl.edu	37	14	105685510	105685510	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001519.2	-1	reviewed	p.A479	0.001	115	0%	147	44.2%	34	52.9%	-	-	-	HMMPfam_BRF1
BRF1	2972	genome.wustl.edu	37	14	105688134	105688134	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001519.2	-1	reviewed	p.A389V	0.000	26	0%	24	25%	6	66.6%	benign(0.017)	tolerated(0.27)	neutral(0.034)	NULL
BTBD6	90135	genome.wustl.edu	37	14	105716459	105716459	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033271.2	+1	validated	p.L228P	1.000	12	0%	17	41.2%	83	45.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
IGHG2	3501	genome.wustl.edu	37	14	106109615	106109615	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000390545	-1	known	p.F302L	0.001	276	0%	340	21.2%	26	0%	possibly_damaging(0.74)	deleterious(0)	deleterious(0.716)	PatternScan_IG_MHC,HMMPfam_C1-set,HMMSmart_IGc1,superfamily_SSF48726
IGHM	3507	genome.wustl.edu	37	14	106320807	106320807	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000496208	-1	known	p.P334S	0.973	29	0%	48	43.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_C1-set,superfamily_Immunoglobulin
IGHV3-9	28451	genome.wustl.edu	37	14	106552354	106552354	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000390600	-1	known	p.K95N	0.000	236	0%	330	20%	0	-	benign(0.02)	tolerated(0.07)	neutral(0.320)	HMMSmart_SM00406,HMMPfam_V-set,superfamily_Immunoglobulin
IGHV1-18	28468	genome.wustl.edu	37	14	106641657	106641657	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000390605	-1	known	p.R86I	0.096	358	0%	373	43.2%	0	-	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMSmart_IGv,HMMPfam_V-set,superfamily_SSF48726
IGHV2-26	28455	genome.wustl.edu	37	14	106757725	106757725	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000390611	-1	known	p.T94	0.000	252	0%	347	44.1%	0	-	-	-	-	HMMSmart_SM00406,HMMPfam_V-set,superfamily_Immunoglobulin
IGHV4-39	28394	genome.wustl.edu	37	14	106877868	106877868	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000390619	-1	known	p.E42D	0.835	152	0%	209	19.1%	1	0%	benign(0.007)	tolerated(0.34)	neutral(0.023)	HMMPfam_V-set,superfamily_Immunoglobulin
IGHV7-81	28378	genome.wustl.edu	37	14	107283200	107283200	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000390639	-1	known	p.F9L	0.676	317	0%	422	47.2%	0	-	probably_damaging(0.968)	tolerated(0.05)	deleterious(0.755)	NULL
LOC646096	646096	genome.wustl.edu	37	15	20488798	20488798	+	RNA	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XR_040858.2	+1	model	NULL	1.000	277	0%	272	22.1%	1	0%	-	-	-	-
LOC646096	646096	genome.wustl.edu	37	15	20489485	20489485	+	RNA	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XR_040858.2	+1	model	NULL	0.999	896	0%	1074	16.5%	0	-	-	-	-	-
ENSG00000229584	0	genome.wustl.edu	37	15	21369356	21369356	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000450252	+1	known	p.R4H	1.000	545	0%	709	18.1%	2	0%	-	-	-	HMMPfam_DUF663
MKRN3	7681	genome.wustl.edu	37	15	23812037	23812037	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005664.3	+1	reviewed	p.L370V	0.977	105	0%	124	44.4%	0	-	benign(0.005)	deleterious(0)	neutral(0.445)	superfamily_SSF57850
C15orf2	23742	genome.wustl.edu	37	15	24922928	24922928	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018958.2	+1	reviewed	p.L638	0.000	143	0%	171	50.3%	0	-	-	-	-	NULL
SNRPN	6638	genome.wustl.edu	37	15	25223413	25223413	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003097.3	+1	reviewed	p.T211	0.489	166	0%	185	53%	264	89.3%	-	-	-	NULL
UBE3A	7337	genome.wustl.edu	37	15	25616494	25616494	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000462.2	-1	reviewed	p.R279Q	0.994	88	0%	99	42.4%	15	13.3%	benign(0.192)	tolerated(0.59)	neutral(0.022)	NULL
HERC2	8924	genome.wustl.edu	37	15	28361877	28361877	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004667.4	-1	reviewed	p.R4515*	1.000	31	0%	47	36.2%	48	22.9%	-	-	-	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
HERC2	8924	genome.wustl.edu	37	15	28391434	28391434	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004667.4	-1	reviewed	p.D3653N	1.000	94	0%	146	43.8%	20	30%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ENSG00000206149	0	genome.wustl.edu	37	15	28882755	28882755	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000382946	+1	known	p.R279*	0.998	1017	0%	1159	13.2%	1	0%	-	-	-	NULL
NDNL2	56160	genome.wustl.edu	37	15	29561319	29561319	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_138704.2	-1	reviewed	p.E197D	0.518	79	0%	84	50%	10	60%	benign(0.001)	tolerated(0.49)	neutral(0.011)	HMMPfam_MAGE
NDNL2	56160	genome.wustl.edu	37	15	29561646	29561646	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_138704.2	-1	reviewed	p.K88N	1.000	35	0%	47	42.6%	4	25%	probably_damaging(0.999)	tolerated(0.19)	deleterious(0.540)	NULL
LOC728498	728498	genome.wustl.edu	37	15	30906033	30906033	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_001724395.2	+1	model	p.E477*	1.000	98	0%	157	36.3%	0	-	-	-	-	NULL
ENSG00000103832	0	genome.wustl.edu	37	15	31089669	31089669	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000220188	+1	known	p.R20I	0.999	33	0%	44	45.5%	1	0%	-	-	-	NULL
FAN1	22909	genome.wustl.edu	37	15	31203041	31203041	+	Nonstop_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000441675	+1	known	p.*534E	0.000	115	0%	165	47.9%	0	-	-	-	-	NULL
TRPM1	4308	genome.wustl.edu	37	15	31294999	31294999	+	Nonsense_Mutation	SNP	C	C	A	rs191719470	by1000genomes	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002420.4	-1	reviewed	p.E1280*	0.999	113	0%	147	48.3%	0	-	-	-	-	NULL
TRPM1	4308	genome.wustl.edu	37	15	31319218	31319218	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002420.4	-1	reviewed	p.P1110	0.000	146	0%	172	41.3%	0	-	-	-	-	NULL
CHRNA7	1139	genome.wustl.edu	37	15	32460254	32460254	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000746.3	+1	reviewed	p.S368	0.989	33	0%	60	20%	0	-	-	-	-	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
ARHGAP11A	9824	genome.wustl.edu	37	15	32928565	32928565	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014783.3	+1	validated	p.E531*	0.999	110	0%	187	49.2%	2	50%	-	-	-	NULL
FMN1	342184	genome.wustl.edu	37	15	33192242	33192242	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001103184.2	-1	validated	p.R975W	1.000	202	0%	222	38.7%	4	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00498,HMMPfam_FH2,superfamily_Formin homology 2 domain (FH2 domain)
RYR3	6263	genome.wustl.edu	37	15	33603250	33603250	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001036.3	+1	validated	p.A2S	1.000	12	0%	35	42.9%	0	-	benign(0.002)	-	-	NULL
RYR3	6263	genome.wustl.edu	37	15	33822838	33822838	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001036.3	+1	validated	p.V109I	0.952	99	0%	183	48.6%	0	-	benign(0)	-	-	HMMPfam_Ins145_P3_rec,HMMSmart_SM00472
RYR3	6263	genome.wustl.edu	37	15	33855074	33855074	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001036.3	+1	validated	p.D337Y	1.000	174	0%	160	43.8%	0	-	probably_damaging(0.996)	-	-	HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMSmart_SM00472
RYR3	6263	genome.wustl.edu	37	15	33941418	33941418	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001036.3	+1	validated	p.R1375I	1.000	110	0%	91	53.8%	0	-	possibly_damaging(0.918)	-	-	HMMPfam_SPRY,HMMSmart_SM00449
RYR3	6263	genome.wustl.edu	37	15	34040438	34040438	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001036.3	+1	validated	p.R2705*	1.000	154	0%	179	40.8%	0	-	-	-	-	NULL
SLC12A6	9990	genome.wustl.edu	37	15	34553133	34553133	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_133647.1	-1	reviewed	p.L135	1.000	208	0%	228	28.5%	0	-	-	-	-	NULL
SLC12A6	9990	genome.wustl.edu	37	15	34610792	34610792	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005135.2	-1	reviewed	p.K30Q	0.808	276	0%	384	40.9%	0	-	benign(0.001)	tolerated(0.55)	neutral(0.007)	NULL
C15orf55	256646	genome.wustl.edu	37	15	34648692	34648692	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_175741.1	+1	validated	p.R800I	0.004	48	0%	37	45.9%	0	-	benign(0.006)	deleterious(0.03)	neutral(0.364)	NULL
GOLGA8A	23015	genome.wustl.edu	37	15	34678872	34678872	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_181077.3	-1	reviewed	p.S80L	0.988	994	0%	1096	27.1%	10	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
ACTC1	70	genome.wustl.edu	37	15	35085599	35085599	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005159.4	-1	reviewed	p.E101K	1.000	131	0%	164	41.5%	0	-	benign(0.02)	-	-	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
AQR	9716	genome.wustl.edu	37	15	35224599	35224599	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014691.2	-1	validated	p.L274M	1.000	136	0%	174	46.6%	11	54.5%	possibly_damaging(0.465)	tolerated(0.22)	neutral(0.195)	NULL
ENSG00000248276	0	genome.wustl.edu	37	15	35376928	35376928	+	RNA	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000514460	+1	known	NULL	0.000	61	0%	68	48.5%	0	-	-	-	-	-
C15orf53	400359	genome.wustl.edu	37	15	38990364	38990364	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_207444.2	+1	validated	p.S53I	0.000	68	0%	61	44.3%	0	-	possibly_damaging(0.681)	-	-	NULL
PLCB2	5330	genome.wustl.edu	37	15	40589048	40589048	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004573.2	-1	validated	p.N462S	1.000	101	0%	135	50.4%	0	-	possibly_damaging(0.828)	tolerated(0.07)	deleterious(0.633)	HMMPfam_PI-PLC-X,HMMSmart_SM00148,superfamily_PLC-like phosphodiesterases
C15orf52	388115	genome.wustl.edu	37	15	40632159	40632159	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_207380.2	-1	validated	p.R68W	1.000	49	0%	68	42.6%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
IVD	3712	genome.wustl.edu	37	15	40702918	40702918	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002225.3	+1	reviewed	p.Y126*	0.071	75	0%	96	47.9%	20	20%	-	-	-	HMMPfam_Acyl-CoA_dh_N,superfamily_AcylCoA_dehyd_NM
BAHD1	22893	genome.wustl.edu	37	15	40750835	40750835	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014952.3	+1	validated	p.R58C	1.000	22	0%	59	42.4%	13	46.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
BAHD1	22893	genome.wustl.edu	37	15	40754307	40754307	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014952.3	+1	validated	p.S543	0.041	40	0%	37	40.5%	22	50%	-	-	-	NULL
CHST14	113189	genome.wustl.edu	37	15	40764524	40764524	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_130468.3	+1	reviewed	p.K371R	0.993	85	0%	142	47.9%	56	32.1%	benign(0)	tolerated(0.38)	neutral(0.018)	NULL
RPUSD2	27079	genome.wustl.edu	37	15	40863814	40863814	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152260.1	+1	provisional	p.F206L	1.000	21	0%	19	42.1%	36	38.8%	benign(0.02)	tolerated(1)	neutral(0.001)	NULL
CASC5	57082	genome.wustl.edu	37	15	40913124	40913124	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_170589.3	+1	validated	p.R247I	0.997	66	0%	64	40.6%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
VPS18	57617	genome.wustl.edu	37	15	41191502	41191502	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020857.2	+1	reviewed	p.V162	0.000	114	0.9%	177	42.9%	63	28.5%	-	-	-	NULL
INO80	54617	genome.wustl.edu	37	15	41279307	41279307	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017553.1	-1	reviewed	p.E1272K	1.000	144	0%	214	41.1%	8	50%	benign(0.226)	tolerated(0.05)	neutral(0.368)	NULL
OIP5	11339	genome.wustl.edu	37	15	41624628	41624628	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007280.1	-1	provisional	p.V44	0.995	48	0%	77	32.5%	6	33.3%	-	-	-	NULL
RTF1	23168	genome.wustl.edu	37	15	41769425	41769425	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015138.4	+1	validated	p.E541D	1.000	79	1.3%	110	48.2%	39	33.3%	possibly_damaging(0.435)	tolerated(0.09)	neutral(0.439)	NULL
TYRO3	7301	genome.wustl.edu	37	15	41854876	41854876	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006293.3	+1	reviewed	p.I180	0.996	78	0%	124	24.2%	2	0%	-	-	-	HMMSmart_IG,HMMPfam_ig,superfamily_SSF48726
TYRO3	7301	genome.wustl.edu	37	15	41856445	41856445	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006293.3	+1	reviewed	p.R215H	0.562	70	0%	77	42.9%	11	54.5%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_IG,superfamily_FN_III-like,superfamily_SSF48726
SPTBN5	51332	genome.wustl.edu	37	15	42153936	42153936	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016642.2	-1	validated	p.L2543	0.732	12	0%	17	58.8%	1	0%	-	-	-	HMMPfam_Spectrin,superfamily_Spectrin repeat
EHD4	30844	genome.wustl.edu	37	15	42193140	42193140	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_139265.3	-1	validated	p.V443	0.287	27	0%	48	33.3%	105	38%	-	-	-	HMMSmart_EH,superfamily_SSF47473
VPS39	23339	genome.wustl.edu	37	15	42455550	42455550	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015289.2	-1	reviewed	p.D725Y	1.000	364	0%	529	42.9%	62	40.3%	probably_damaging(0.98)	deleterious(0.01)	deleterious(0.830)	NULL
GANC	2595	genome.wustl.edu	37	15	42619578	42619578	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_198141.2	+1	reviewed	p.D480N	1.000	445	0%	603	40.6%	3	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Glyco_hydro_31,superfamily_(Trans)glycosidases
STARD9	57519	genome.wustl.edu	37	15	42976947	42976947	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_001129482.3	+1	model	p.K1009N	0.002	158	0%	175	55.4%	0	-	benign(0.118)	-	-	NULL
STARD9	57519	genome.wustl.edu	37	15	42979062	42979062	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_001129482.3	+1	model	p.E1676	1.000	76	0%	80	26.3%	0	-	-	-	-	NULL
STARD9	57519	genome.wustl.edu	37	15	42979649	42979649	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_001129482.3	+1	model	p.S1872I	0.046	105	0%	98	30.6%	0	-	possibly_damaging(0.922)	-	-	NULL
STARD9	57519	genome.wustl.edu	37	15	42980607	42980607	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_001129482.3	+1	model	p.E2191D	0.001	67	0%	95	37.9%	0	-	possibly_damaging(0.915)	-	-	NULL
UBR1	197131	genome.wustl.edu	37	15	43317044	43317044	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_174916.2	-1	reviewed	p.E908K	1.000	258	0.4%	363	43.8%	9	22.2%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
TGM7	116179	genome.wustl.edu	37	15	43577044	43577044	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_052955.2	-1	validated	p.E324D	1.000	281	0%	357	42.6%	1	100%	probably_damaging(0.979)	deleterious(0.03)	deleterious(0.786)	HMMPfam_Transglut_core,HMMSmart_TGc,superfamily_SSF54001
LCMT2	9836	genome.wustl.edu	37	15	43621258	43621258	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014793.3	-1	reviewed	p.L477*	0.073	82	0%	111	43.2%	19	36.8%	-	-	-	superfamily_Gal_oxid_central
ADAL	161823	genome.wustl.edu	37	15	43627963	43627963	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001012969.2	+1	validated	p.D45Y	0.998	304	0%	384	10.4%	0	-	benign(0)	tolerated(0.99)	-	HMMPfam_A_deaminase,superfamily_SSF51556
MAP1A	4130	genome.wustl.edu	37	15	43816307	43816307	+	Missense_Mutation	SNP	G	G	A	rs192228146	by1000genomes	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002373.5	+1	reviewed	p.R879H	1.000	85	0%	115	37.4%	5	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CATSPER2	117155	genome.wustl.edu	37	15	43928269	43928269	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_172095.1	-1	reviewed	p.I331L	1.000	147	0%	151	25.2%	2	50%	probably_damaging(0.97)	tolerated(0.06)	deleterious(0.735)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CASC4	113201	genome.wustl.edu	37	15	44671915	44671915	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_138423.2	+1	reviewed	p.S277Y	1.000	270	0%	337	44.8%	29	41.3%	probably_damaging(0.974)	deleterious(0.03)	deleterious(0.780)	NULL
CTDSPL2	51496	genome.wustl.edu	37	15	44776447	44776447	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016396.2	+1	validated	p.R71Q	1.000	179	0%	253	43.5%	2	50%	possibly_damaging(0.754)	tolerated(0.3)	neutral(0.307)	NULL
TRIM69	140691	genome.wustl.edu	37	15	45047531	45047531	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_182985.3	+1	reviewed	p.S147Y	0.992	78	0%	69	49.3%	1	0%	benign(0.13)	deleterious(0.01)	neutral(0.417)	NULL
C15orf43	145645	genome.wustl.edu	37	15	45270718	45270718	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152448.1	+1	predicted	p.F185	1.000	157	0%	168	45.2%	0	-	-	-	-	NULL
GATM	2628	genome.wustl.edu	37	15	45658643	45658643	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001482.2	-1	reviewed	p.T247A	0.998	161	0%	186	40.3%	1	0%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_Amidinotransf,superfamily_Pentein
HMGN2P46	283651	genome.wustl.edu	37	15	45847973	45847973	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000313559	+1	known	p.S108N	0.501	76	0%	107	51.4%	0	-	-	-	-	NULL
PLDN	26258	genome.wustl.edu	37	15	45884365	45884365	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012388.2	+1	reviewed	p.I39V	0.006	379	0.3%	407	42.3%	6	50%	benign(0)	tolerated(1)	-	NULL
SEMA6D	80031	genome.wustl.edu	37	15	48063261	48063261	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_153618.1	+1	reviewed	p.T834I	0.994	140	0%	188	11.2%	0	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	NULL
SEMA6D	80031	genome.wustl.edu	37	15	48063375	48063375	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_153618.1	+1	reviewed	p.S872Y	1.000	90	0%	127	48%	0	-	possibly_damaging(0.867)	deleterious(0.01)	deleterious(0.742)	NULL
SLC12A1	6557	genome.wustl.edu	37	15	48580634	48580634	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000338.2	+1	reviewed	p.L932I	1.000	155	0.6%	200	42%	0	-	benign(0.005)	tolerated(0.28)	neutral(0.032)	NULL
SHC4	399694	genome.wustl.edu	37	15	49143403	49143403	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_203349.3	-1	validated	p.E429*	0.999	323	0%	383	38.4%	0	-	-	-	-	NULL
SECISBP2L	9728	genome.wustl.edu	37	15	49284841	49284841	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014701.2	-1	provisional	p.R924Q	1.000	180	0%	237	42.6%	20	35%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
C15orf33	196951	genome.wustl.edu	37	15	49623995	49623995	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152647.2	-1	validated	p.E467	0.309	223	0%	293	38.2%	2	0%	-	-	-	NULL
DTWD1	56986	genome.wustl.edu	37	15	49917404	49917404	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001144955.1	+1	validated	p.E14*	0.710	128	0%	168	23.2%	3	0%	-	-	-	NULL
ATP8B4	79895	genome.wustl.edu	37	15	50158640	50158640	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024837.2	-1	validated	p.V1023	0.989	144	0%	174	23%	0	-	-	-	-	superfamily_SSF81665
ATP8B4	79895	genome.wustl.edu	37	15	50223383	50223383	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024837.2	-1	validated	p.T525	0.000	332	0%	396	41.9%	1	0%	-	-	-	superfamily_SSF56784,superfamily_SSF81660,superfamily_SSF81665
ATP8B4	79895	genome.wustl.edu	37	15	50226348	50226348	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024837.2	-1	validated	p.S440Y	0.006	231	0%	260	47.7%	0	-	benign(0.023)	deleterious(0.03)	neutral(0.365)	superfamily_SSF56784,superfamily_SSF81660,superfamily_SSF81665
TRPM7	54822	genome.wustl.edu	37	15	50853894	50853894	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017672.4	-1	reviewed	p.S1860Y	1.000	141	0%	175	29.7%	2	0%	possibly_damaging(0.648)	deleterious(0)	deleterious(0.672)	NULL
AP4E1	23431	genome.wustl.edu	37	15	51223004	51223004	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007347.3	+1	validated	p.E235D	1.000	205	0%	273	39.6%	0	-	benign(0.352)	tolerated(0.33)	neutral(0.136)	HMMPfam_Adaptin_N,superfamily_ARM-type_fold
AP4E1	23431	genome.wustl.edu	37	15	51233688	51233688	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007347.3	+1	validated	p.S331	0.504	594	0.3%	711	43%	1	100%	-	-	-	HMMPfam_Adaptin_N,superfamily_ARM-type_fold
CYP19A1	1588	genome.wustl.edu	37	15	51520007	51520007	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000103.3	-1	reviewed	p.L140	0.863	229	0.4%	239	23.4%	0	-	-	-	-	HMMPfam_p450,superfamily_Cytochrome_P450
GLDN	342035	genome.wustl.edu	37	15	51696627	51696627	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_181789.2	+1	validated	p.G444	1.000	139	0%	243	43.6%	4	0%	-	-	-	HMMPfam_OLF,HMMSmart_SM00284
GLDN	342035	genome.wustl.edu	37	15	51696869	51696869	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_181789.2	+1	validated	p.R525I	1.000	49	0%	108	38.9%	0	-	possibly_damaging(0.914)	deleterious(0)	deleterious(0.810)	HMMPfam_OLF,HMMSmart_SM00284
DMXL2	23312	genome.wustl.edu	37	15	51792045	51792045	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015263.3	-1	validated	p.D1126N	1.000	113	0%	162	42%	0	-	possibly_damaging(0.76)	tolerated(0.41)	neutral(0.296)	NULL
DMXL2	23312	genome.wustl.edu	37	15	51809350	51809350	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015263.3	-1	validated	p.E817D	1.000	203	0%	255	40.8%	0	-	probably_damaging(0.997)	tolerated(0.89)	neutral(0.466)	NULL
SCG3	29106	genome.wustl.edu	37	15	51980524	51980524	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_013243.3	+1	reviewed	p.I155	0.974	170	0%	253	46.2%	0	-	-	-	-	NULL
LEO1	123169	genome.wustl.edu	37	15	52245325	52245325	+	Splice_Site	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_138792.2	-1	provisional	e8+1	1.000	148	0%	176	39.2%	0	-	-	-	-	-
LEO1	123169	genome.wustl.edu	37	15	52257946	52257946	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_138792.2	-1	provisional	p.E272K	1.000	194	0%	225	35.6%	22	31.8%	benign(0.4)	tolerated(0.27)	neutral(0.162)	NULL
MAPK6	5597	genome.wustl.edu	37	15	52356227	52356227	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002748.3	+1	reviewed	p.R399Q	1.000	200	0%	309	45%	26	42.3%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
MYO5A	4644	genome.wustl.edu	37	15	52620132	52620132	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000259.3	-1	reviewed	p.R1518*	0.991	287	0%	403	41.7%	2	0%	-	-	-	NULL
ARPP19	10776	genome.wustl.edu	37	15	52844297	52844297	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006628.4	-1	validated	p.K58T	1.000	423	0%	594	42.9%	25	56%	probably_damaging(0.99)	deleterious(0.05)	deleterious(0.787)	HMMPfam_Endosulfine
FAM214A	56204	genome.wustl.edu	37	15	52885909	52885909	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_019600.2	-1	validated	p.D892N	1.000	76	0%	118	45.8%	29	41.3%	probably_damaging(0.979)	deleterious(0.04)	deleterious(0.771)	NULL
WDR72	256764	genome.wustl.edu	37	15	53908282	53908282	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_182758.2	-1	validated	p.F707L	0.023	151	0.7%	219	14.2%	3	0%	benign(0.005)	tolerated(0.79)	neutral(0.001)	NULL
UNC13C	440279	genome.wustl.edu	37	15	54305121	54305121	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001080534.1	+1	provisional	p.K7N	1.000	115	0%	138	29.7%	0	-	possibly_damaging(0.736)	deleterious(0)	deleterious(0.714)	NULL
UNC13C	440279	genome.wustl.edu	37	15	54305923	54305923	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001080534.1	+1	provisional	p.D275N	1.000	88	0%	89	43.8%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
RAB27A	5873	genome.wustl.edu	37	15	55497737	55497737	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004580.3	-1	reviewed	p.E212*	0.886	472	0%	607	44.3%	14	50%	-	-	-	HMMSmart_SM00176,superfamily_P-loop containing nucleoside triphosphate hydrolases
PIGB	9488	genome.wustl.edu	37	15	55647093	55647093	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004855.4	+1	reviewed	p.N479H	0.551	187	0%	272	26.8%	16	25%	benign(0.364)	tolerated(0.08)	neutral(0.416)	NULL
DYX1C1	161582	genome.wustl.edu	37	15	55759317	55759317	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_130810.2	-1	reviewed	p.N150D	1.000	555	0%	600	40.5%	0	-	possibly_damaging(0.608)	tolerated(0.51)	neutral(0.220)	NULL
PYGO1	26108	genome.wustl.edu	37	15	55838836	55838836	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015617.1	-1	provisional	p.P215	0.044	130	0%	177	46.9%	0	-	-	-	-	NULL
PRTG	283659	genome.wustl.edu	37	15	56032579	56032579	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_173814.4	-1	validated	e2+1	1.000	178	0%	176	39.8%	0	-	-	-	-	-
NEDD4	4734	genome.wustl.edu	37	15	56208154	56208154	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000503468	-1	known	p.L172I	0.991	193	0%	219	42.9%	0	-	-	-	-	NULL
RFX7	64864	genome.wustl.edu	37	15	56390309	56390309	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_022841.5	-1	validated	p.I359	0.810	175	0%	221	38%	2	50%	-	-	-	NULL
MNS1	55329	genome.wustl.edu	37	15	56726442	56726442	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018365.2	-1	reviewed	p.R388Q	1.000	469	0%	572	50.7%	2	50%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
ZNF280D	54816	genome.wustl.edu	37	15	56959174	56959174	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017661.2	-1	validated	p.R519Q	1.000	169	0%	208	14.4%	2	100%	probably_damaging(0.996)	tolerated(0.18)	deleterious(0.518)	NULL
ZNF280D	54816	genome.wustl.edu	37	15	56981336	56981336	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017661.2	-1	validated	p.S228*	0.997	225	0%	224	38.4%	1	0%	-	-	-	NULL
LIPC	3990	genome.wustl.edu	37	15	58830612	58830612	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000236.2	+1	reviewed	p.E57K	0.000	192	0%	218	50%	0	-	benign(0.313)	tolerated(0.15)	neutral(0.339)	HMMPfam_Lipase,superfamily_alpha/beta-Hydrolases
HSP90AB4P	664618	genome.wustl.edu	37	15	58984584	58984584	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000380522	-1	known	p.E247D	1.000	61	0%	72	27.8%	1	0%	-	-	-	HMMPfam_HSP90
RNF111	54778	genome.wustl.edu	37	15	59323816	59323816	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017610.6	+1	reviewed	p.S265	0.993	183	0%	199	41.7%	5	80%	-	-	-	NULL
LOC100130107	100130107	genome.wustl.edu	37	15	60061088	60061088	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_001719310.2	-1	model	p.V53	1.000	16	0%	25	44%	74	0%	-	-	-	NULL
VPS13C	54832	genome.wustl.edu	37	15	62221754	62221754	+	Nonsense_Mutation	SNP	C	C	A	rs191791132		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020821.1	-1	validated	p.E2078*	0.986	293	0%	396	41.2%	1	0%	-	-	-	NULL
TPM1	7168	genome.wustl.edu	37	15	63353922	63353922	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001018004.1	+1	reviewed	p.E192K	1.000	207	0.5%	259	42.1%	22	4.5%	benign(0)	deleterious(0)	neutral(0.445)	HMMPfam_Tropomyosin
USP3	9960	genome.wustl.edu	37	15	63880583	63880583	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006537.2	+1	validated	p.Q392H	0.979	227	0%	280	43.9%	2	50%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_UCH,superfamily_SSF54001
KIAA0101	9768	genome.wustl.edu	37	15	64669028	64669028	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014736.4	-1	validated	p.F68L	1.000	157	0%	184	12%	10	10%	benign(0.41)	deleterious(0)	deleterious(0.577)	NULL
ZNF609	23060	genome.wustl.edu	37	15	64792408	64792408	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000416172	+1	known	p.E264*	0.995	45	0%	38	26.3%	0	-	-	-	-	NULL
MIR1272	100302184	genome.wustl.edu	37	15	65054679	65054679	+	RNA	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000408106	-1	known	NULL	0.000	214	0%	254	46.1%	0	-	-	-	-	-
CILP	8483	genome.wustl.edu	37	15	65489863	65489863	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003613.3	-1	reviewed	p.R921*	0.985	151	0%	184	40.2%	4	0%	-	-	-	NULL
DPP8	54878	genome.wustl.edu	37	15	65793069	65793069	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_197960.2	-1	reviewed	p.E157*	1.000	363	0%	502	47%	1	0%	-	-	-	superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain
SLC24A1	9187	genome.wustl.edu	37	15	65917163	65917163	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004727.2	+1	validated	p.L249I	0.001	180	0.6%	221	16.3%	4	50%	unknown(0)	deleterious(0)	-	NULL
SLC24A1	9187	genome.wustl.edu	37	15	65945080	65945080	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004727.2	+1	validated	p.R995Q	1.000	260	0%	380	40%	12	25%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Na_Ca_ex
DENND4A	10260	genome.wustl.edu	37	15	65994168	65994168	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001144823.1	-1	validated	p.R831*	0.955	169	0%	250	48%	1	0%	-	-	-	HMMPfam_PPR
TIPIN	54962	genome.wustl.edu	37	15	66641443	66641443	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017858.2	-1	validated	p.R144*	1.000	304	0%	319	40.4%	3	0%	-	-	-	HMMPfam_Swi3
IQCH	64799	genome.wustl.edu	37	15	67664594	67664594	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001031715.2	+1	validated	p.S300Y	0.848	299	0%	360	44.2%	1	0%	probably_damaging(0.997)	deleterious(0.03)	deleterious(0.831)	NULL
CALML4	91860	genome.wustl.edu	37	15	68486442	68486442	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033429.2	-1	validated	p.L168I	1.000	204	0%	268	17.9%	75	13.3%	possibly_damaging(0.72)	tolerated(0.15)	deleterious(0.502)	HMMSmart_SM00054,superfamily_EF-hand
ANP32A	8125	genome.wustl.edu	37	15	69113064	69113064	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006305.3	-1	validated	p.L9	1.000	203	0%	228	43.9%	82	60.9%	-	-	-	superfamily_SSF52058
UACA	55075	genome.wustl.edu	37	15	70991968	70991968	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018003.2	-1	validated	p.R37Q	1.000	444	0.5%	541	40.7%	5	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_ANK,superfamily_ANK
LRRC49	54839	genome.wustl.edu	37	15	71302170	71302170	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017691.2	+1	validated	p.L478I	0.996	175	0%	223	42.2%	8	50%	possibly_damaging(0.694)	tolerated(1)	neutral(0.249)	NULL
MYO9A	4649	genome.wustl.edu	37	15	72142482	72142482	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006901.2	-1	validated	p.R2203Q	1.000	240	0%	299	47.2%	7	42.8%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
MYO9A	4649	genome.wustl.edu	37	15	72191194	72191194	+	Missense_Mutation	SNP	C	C	T	rs193029114	by1000genomes	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006901.2	-1	validated	p.R1217Q	0.993	284	0%	367	46.3%	0	-	possibly_damaging(0.67)	deleterious(0.03)	deleterious(0.602)	NULL
MYO9A	4649	genome.wustl.edu	37	15	72227737	72227737	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006901.2	-1	validated	p.I823L	0.991	211	0%	305	42.3%	1	0%	benign(0.001)	tolerated(0.35)	neutral(0.021)	HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
ADPGK	83440	genome.wustl.edu	37	15	73044594	73044594	+	RNA	SNP	C	C	A	rs148487929	by1000genomes	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NR_023318.1	-1	validated	NULL	1.000	17	0%	38	31.6%	6	16.6%	-	-	-	-
ADPGK	83440	genome.wustl.edu	37	15	73044753	73044753	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_031284.4	-1	validated	p.R474*	0.996	92	0%	112	40.2%	24	50%	-	-	-	HMMPfam_ADP_PFK_GK,superfamily_SSF53613
NEO1	4756	genome.wustl.edu	37	15	73594994	73594994	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002499.3	+1	validated	p.L1448P	1.000	153	1.3%	224	46.9%	24	37.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Neogenin_C
PML	5371	genome.wustl.edu	37	15	74325601	74325601	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033238.2	+1	reviewed	p.L501F	0.001	62	0%	89	31.5%	85	23.5%	possibly_damaging(0.906)	deleterious(0)	deleterious(0.804)	NULL
CYP1A2	1544	genome.wustl.edu	37	15	75047335	75047335	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000761.3	+1	reviewed	p.G486V	0.994	37	0%	60	56.7%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_p450,superfamily_Cytochrome_P450
LMAN1L	79748	genome.wustl.edu	37	15	75113457	75113457	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021819.2	+1	validated	p.R317C	0.015	57	0%	48	45.8%	0	-	probably_damaging(0.967)	deleterious(0.01)	deleterious(0.815)	NULL
NEIL1	79661	genome.wustl.edu	37	15	75641330	75641330	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024608.2	+1	validated	p.E28D	1.000	16	0%	15	60%	5	20%	possibly_damaging(0.716)	tolerated(0.27)	neutral(0.292)	superfamily_N-terminal domain of MutM-like DNA repair proteins
MAN2C1	4123	genome.wustl.edu	37	15	75648764	75648764	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006715.2	-1	validated	p.Q922K	0.990	21	0%	28	32.1%	57	42.1%	benign(0.022)	tolerated(0.56)	neutral(0.007)	HMMPfam_Glyco_hydro_38C
SNUPN	10073	genome.wustl.edu	37	15	75913312	75913312	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001042581.1	-1	reviewed	p.R27	1.000	177	0%	211	25.6%	21	42.8%	-	-	-	NULL
CSPG4	1464	genome.wustl.edu	37	15	75969493	75969493	+	Silent	SNP	G	G	A	rs150424346	by1000genomes	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001897.4	-1	reviewed	p.G1789	0.002	15	0%	16	68.8%	5	0%	-	-	-	NULL
FBXO22	26263	genome.wustl.edu	37	15	76205550	76205550	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_147188.1	+1	reviewed	p.R96C	0.718	200	0%	166	43.4%	32	31.2%	probably_damaging(0.997)	tolerated(0.17)	deleterious(0.525)	NULL
FBXO22	26263	genome.wustl.edu	37	15	76209598	76209598	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_147188.1	+1	reviewed	p.R164Q	1.000	171	0%	203	42.4%	8	37.5%	benign(0.014)	tolerated(0.51)	neutral(0.009)	NULL
C15orf27	123591	genome.wustl.edu	37	15	76449075	76449075	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152335.2	+1	validated	p.L120I	1.000	258	0%	299	41.8%	0	-	probably_damaging(0.995)	tolerated(0.07)	deleterious(0.776)	NULL
SCAPER	49855	genome.wustl.edu	37	15	76643604	76643604	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020843.2	-1	validated	p.A1357V	0.002	290	0.3%	364	37.9%	4	25%	benign(0)	tolerated(0.38)	neutral(0.018)	NULL
SCAPER	49855	genome.wustl.edu	37	15	77057340	77057340	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020843.2	-1	validated	p.E562K	1.000	343	0%	458	25.1%	1	100%	possibly_damaging(0.719)	tolerated(0.1)	deleterious(0.547)	NULL
SCAPER	49855	genome.wustl.edu	37	15	77092596	77092596	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020843.2	-1	validated	p.N201H	1.000	387	0.3%	423	23.2%	2	0%	probably_damaging(0.993)	deleterious(0.04)	deleterious(0.799)	NULL
PSTPIP1	9051	genome.wustl.edu	37	15	77310518	77310518	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003978.3	+1	reviewed	p.Y22	0.969	80	0%	106	42.5%	1	0%	-	-	-	HMMPfam_FCH,HMMSmart_SM00055,superfamily_Prismane protein-like
SGK269	79834	genome.wustl.edu	37	15	77425854	77425854	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024776.2	-1	validated	p.I1190	0.889	181	0%	214	42.5%	5	20%	-	-	-	NULL
HMG20A	10363	genome.wustl.edu	37	15	77759488	77759488	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018200.2	+1	provisional	p.L97I	1.000	121	0%	175	11.4%	8	0%	possibly_damaging(0.943)	tolerated(0.44)	neutral(0.400)	superfamily_HMG-box
TBC1D2B	23102	genome.wustl.edu	37	15	78317622	78317622	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_144572.1	-1	validated	p.K355N	0.732	99	0%	112	34.8%	3	0%	possibly_damaging(0.444)	tolerated(0.39)	neutral(0.161)	NULL
SH2D7	646892	genome.wustl.edu	37	15	78393393	78393393	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001101404.1	+1	provisional	p.P266	0.000	40	0%	38	44.7%	0	-	-	-	-	NULL
IDH3A	3419	genome.wustl.edu	37	15	78455907	78455907	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005530.2	+1	reviewed	p.D224Y	1.000	359	0%	393	40.2%	12	75%	probably_damaging(0.958)	deleterious(0)	deleterious(0.846)	HMMPfam_Iso_dh,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like
WDR61	80349	genome.wustl.edu	37	15	78577679	78577679	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_025234.1	-1	provisional	p.S251L	1.000	163	0%	179	46.9%	132	33.3%	benign(0.402)	deleterious(0)	deleterious(0.574)	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
IREB2	3658	genome.wustl.edu	37	15	78781040	78781040	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004136.2	+1	validated	p.R668Q	0.998	186	0%	227	46.7%	0	-	probably_damaging(1)	tolerated(0.4)	deleterious(0.516)	superfamily_Aconitase iron-sulfur domain
IREB2	3658	genome.wustl.edu	37	15	78781054	78781054	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004136.2	+1	validated	p.R673*	0.042	191	0%	226	42.9%	0	-	-	-	-	superfamily_Aconitase iron-sulfur domain
IREB2	3658	genome.wustl.edu	37	15	78786285	78786285	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004136.2	+1	validated	p.R787*	1.000	225	0%	267	48.7%	1	0%	-	-	-	HMMPfam_Aconitase_C,superfamily_Aconitase
CHRNA3	1136	genome.wustl.edu	37	15	78894396	78894396	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000743.4	-1	reviewed	p.M196I	1.000	227	0%	324	46%	1	0%	benign(0.001)	tolerated(0.78)	neutral(0.001)	HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like
KIAA1024	23251	genome.wustl.edu	37	15	79748826	79748826	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015206.2	+1	validated	p.R113C	0.005	63	0%	80	43.8%	0	-	probably_damaging(0.983)	deleterious(0.03)	deleterious(0.793)	NULL
KIAA1024	23251	genome.wustl.edu	37	15	79749330	79749330	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015206.2	+1	validated	p.A281S	0.382	141	0%	167	37.1%	1	0%	benign(0.235)	tolerated(0.23)	neutral(0.065)	NULL
KIAA1024	23251	genome.wustl.edu	37	15	79750035	79750035	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015206.2	+1	validated	p.D516N	1.000	51	0%	67	46.3%	2	100%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
ARNT2	9915	genome.wustl.edu	37	15	80750279	80750279	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014862.3	+1	reviewed	p.F52	0.725	431	0%	518	26.6%	4	25%	-	-	-	NULL
IL16	3603	genome.wustl.edu	37	15	81598271	81598271	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_172217.3	+1	reviewed	p.G1148E	1.000	91	0%	85	49.4%	7	14.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
TMC3	342125	genome.wustl.edu	37	15	81637211	81637211	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001080532.1	-1	provisional	p.E472*	0.002	267	0.7%	386	45.1%	0	-	-	-	-	NULL
TMC3	342125	genome.wustl.edu	37	15	81638738	81638738	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001080532.1	-1	provisional	p.L414F	1.000	226	0%	303	47.2%	0	-	probably_damaging(1)	tolerated(0.12)	deleterious(0.760)	NULL
TMC3	342125	genome.wustl.edu	37	15	81644068	81644068	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001080532.1	-1	provisional	p.S350	0.327	89	0%	142	47.9%	0	-	-	-	-	NULL
MEX3B	84206	genome.wustl.edu	37	15	82336227	82336227	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032246.3	-1	provisional	p.A328	0.998	36	0%	44	36.4%	2	50%	-	-	-	NULL
CPEB1	64506	genome.wustl.edu	37	15	83215243	83215243	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_030594.3	-1	reviewed	p.S508F	1.000	70	0%	92	47.8%	0	-	probably_damaging(0.965)	deleterious(0.03)	deleterious(0.771)	NULL
AP3B2	8120	genome.wustl.edu	37	15	83332639	83332639	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004644.3	-1	validated	p.D765N	0.011	58	0%	81	48.1%	0	-	unknown(0)	tolerated(0.32)	-	NULL
AP3B2	8120	genome.wustl.edu	37	15	83335625	83335625	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004644.3	-1	validated	p.R576C	1.000	46	0%	81	49.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Adaptin_N,superfamily_ARM-type_fold
FSD2	123722	genome.wustl.edu	37	15	83456129	83456129	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001007122.2	-1	provisional	p.S5L	0.002	86	0%	138	47.8%	0	-	benign(0.055)	tolerated(0.05)	neutral(0.349)	NULL
BNC1	646	genome.wustl.edu	37	15	83926719	83926719	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001717.3	-1	reviewed	p.I820	1.000	171	0%	237	48.1%	0	-	-	-	-	NULL
ADAMTSL3	57188	genome.wustl.edu	37	15	84442378	84442378	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_207517.2	+1	validated	p.S98Y	1.000	268	0%	368	42.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
ADAMTSL3	57188	genome.wustl.edu	37	15	84651865	84651865	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_207517.2	+1	validated	p.S1162L	0.000	26	0%	34	35.3%	1	0%	benign(0)	tolerated(0.2)	neutral(0.049)	NULL
ADAMTSL3	57188	genome.wustl.edu	37	15	84683462	84683462	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_207517.2	+1	validated	p.V1381A	0.000	217	0%	302	45.4%	0	-	benign(0.066)	tolerated(0.8)	neutral(0.005)	HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
ZSCAN2	54993	genome.wustl.edu	37	15	85147424	85147424	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_181877.3	+1	reviewed	p.R89I	1.000	33	0%	50	42%	5	40%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_SCAN,HMMSmart_SM00431
ALPK3	57538	genome.wustl.edu	37	15	85370821	85370821	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020778.4	+1	validated	p.T299A	1.000	55	0%	82	43.9%	0	-	possibly_damaging(0.791)	deleterious(0.03)	deleterious(0.661)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
ALPK3	57538	genome.wustl.edu	37	15	85405942	85405942	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020778.4	+1	validated	p.L1604	1.000	119	0%	153	12.4%	1	0%	-	-	-	HMMPfam_Alpha_kinase,superfamily_Protein kinase-like (PK-like)
AGBL1	123624	genome.wustl.edu	37	15	87217525	87217525	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152336.2	+1	validated	p.E981*	0.808	79	0%	99	35.4%	0	-	-	-	-	HMMPfam_Peptidase_M14
NTRK3	4916	genome.wustl.edu	37	15	88678345	88678345	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001012338.1	-1	reviewed	p.K397N	0.999	388	0%	579	22.5%	0	-	benign(0.026)	tolerated(0.32)	neutral(0.025)	superfamily_Immunoglobulin
DET1	55070	genome.wustl.edu	37	15	89070971	89070971	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017996.3	-1	validated	p.A388D	1.000	149	0%	148	43.9%	2	0%	probably_damaging(0.995)	deleterious(0.04)	deleterious(0.806)	HMMPfam_Det1
DET1	55070	genome.wustl.edu	37	15	89073948	89073948	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017996.3	-1	validated	p.R341Q	1.000	51	0%	66	40.9%	1	0%	probably_damaging(1)	tolerated(0.19)	deleterious(0.549)	HMMPfam_Det1
ACAN	176	genome.wustl.edu	37	15	89402035	89402035	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_013227.3	+1	reviewed	p.V1958	0.528	63	0%	97	35.1%	0	-	-	-	-	NULL
ABHD2	11057	genome.wustl.edu	37	15	89694986	89694986	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007011.7	+1	reviewed	p.S91	0.241	155	0%	192	45.8%	49	42.8%	-	-	-	NULL
RLBP1	6017	genome.wustl.edu	37	15	89760402	89760402	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000326.4	-1	reviewed	p.F99L	1.000	37	0%	49	28.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CRAL_TRIO_N,superfamily_CRAL/TRIO N-terminal domain
RHCG	51458	genome.wustl.edu	37	15	90021067	90021067	+	Splice_Site	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016321.1	-1	provisional	e6+1	1.000	63	0%	82	41.5%	0	-	-	-	-	-
RHCG	51458	genome.wustl.edu	37	15	90039635	90039635	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016321.1	-1	provisional	p.K47N	0.000	52	0%	64	50%	4	75%	benign(0.001)	tolerated(0.57)	neutral(0.006)	HMMPfam_Ammonium_transp
C15orf42	90381	genome.wustl.edu	37	15	90143870	90143870	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152259.3	+1	validated	p.R703*	0.988	120	0%	139	45.3%	0	-	-	-	-	NULL
C15orf42	90381	genome.wustl.edu	37	15	90144780	90144780	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152259.3	+1	validated	p.L770M	1.000	462	0%	584	40.1%	0	-	probably_damaging(0.97)	tolerated(0.24)	neutral(0.450)	NULL
PLIN1	5346	genome.wustl.edu	37	15	90212875	90212875	+	Missense_Mutation	SNP	C	C	A	rs8179041	byCluster	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001145311.1	-1	reviewed	p.Q209H	0.884	65	0%	75	49.3%	0	-	possibly_damaging(0.823)	tolerated(0.54)	neutral(0.319)	HMMPfam_Perilipin
ZNF710	374655	genome.wustl.edu	37	15	90611566	90611566	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_198526.2	+1	validated	p.V399	0.995	26	0%	36	61.1%	20	30%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
SEMA4B	10509	genome.wustl.edu	37	15	90760699	90760699	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020210.3	+1	validated	p.F62	0.997	80	0%	100	40%	33	57.5%	-	-	-	superfamily_Sema domain
CIB1	10519	genome.wustl.edu	37	15	90775471	90775471	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006384.3	-1	validated	p.L59I	1.000	98	1%	123	49.6%	389	47.8%	benign(0)	tolerated(0.5)	neutral(0.010)	superfamily_EF-hand
LOC728477	728477	genome.wustl.edu	37	15	90837731	90837731	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_002343383.1	+1	model	p.S170Y	0.004	15	0%	17	35.3%	0	-	-	-	-	NULL
IQGAP1	8826	genome.wustl.edu	37	15	91025453	91025453	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003870.3	+1	reviewed	p.K1165N	0.988	181	0.6%	241	22.4%	165	26%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_RasGAP,HMMSmart_SM00323,superfamily_GTPase activation domain GAP
BLM	641	genome.wustl.edu	37	15	91358383	91358383	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000057.2	+1	reviewed	p.I1376	0.000	122	0%	166	43.4%	10	20%	-	-	-	NULL
BLM	641	genome.wustl.edu	37	15	91358442	91358442	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000057.2	+1	reviewed	p.L1396*	0.994	169	0%	210	43.3%	7	14.2%	-	-	-	NULL
MAN2A2	4122	genome.wustl.edu	37	15	91449982	91449982	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006122.2	+1	validated	p.R283H	1.000	43	0%	63	38.1%	58	39.6%	possibly_damaging(0.933)	tolerated(0.09)	deleterious(0.675)	HMMPfam_Glyco_hydro_38,superfamily_Glyco_hydro/deAcase_b/a-brl
VPS33B	26276	genome.wustl.edu	37	15	91553038	91553038	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018668.3	-1	reviewed	p.I132	1.000	399	0%	440	45%	24	50%	-	-	-	HMMPfam_Sec1,superfamily_Sec1/munc18-like (SM) proteins
LOC390638	390638	genome.wustl.edu	37	15	91577455	91577455	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_002343397.1	-1	model	p.L138	0.085	25	0%	23	43.5%	0	-	-	-	-	NULL
CHD2	1106	genome.wustl.edu	37	15	93543845	93543845	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001271.3	+1	reviewed	p.N1371T	1.000	273	0%	368	44.3%	5	40%	possibly_damaging(0.8)	tolerated(0.58)	neutral(0.306)	superfamily_P-loop containing nucleoside triphosphate hydrolases
FAM149B2	100113400	genome.wustl.edu	37	15	97300583	97300583	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000398303	+1	known	p.T18A	0.499	184	0%	253	42.7%	0	-	-	-	-	NULL
ARRDC4	91947	genome.wustl.edu	37	15	98513145	98513145	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_183376.2	+1	validated	p.L305F	1.000	128	0%	154	40.3%	12	33.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Arrestin_C,superfamily_E set domains
SYNM	23336	genome.wustl.edu	37	15	99673117	99673117	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000336292	+1	known	p.E1517*	0.005	84	1.2%	142	43%	0	-	-	-	-	NULL
HSP90B2P	7190	genome.wustl.edu	37	15	99799326	99799326	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000378906	+1	known	p.R160*	1.000	111	0.9%	193	33.2%	0	-	-	-	-	superfamily_Ribosomal_S5_D2-typ_fold,HMMPfam_HSP90
ENSG00000214394	0	genome.wustl.edu	37	15	100332584	100332584	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000398270	+1	known	p.Q67H	0.997	117	0%	190	47.4%	0	-	-	-	-	NULL
LINS	55180	genome.wustl.edu	37	15	101115225	101115225	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001040614.1	-1	reviewed	p.E200*	1.000	169	0%	213	49.8%	0	-	-	-	-	NULL
LINS	55180	genome.wustl.edu	37	15	101120681	101120681	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001040614.1	-1	reviewed	p.L123I	0.900	171	0%	203	41.9%	0	-	probably_damaging(0.988)	tolerated(0.17)	deleterious(0.496)	NULL
LRRK1	79705	genome.wustl.edu	37	15	101569252	101569252	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024652.3	+1	validated	p.W926C	1.000	94	0%	125	48%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CHSY1	22856	genome.wustl.edu	37	15	101718253	101718253	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000254190	-1	known	p.Q583H	0.993	135	0%	159	45.3%	18	44.4%	benign(0.002)	tolerated(0.28)	neutral(0.032)	HMMPfam_CHGN,superfamily_SSF53448
PCSK6	5046	genome.wustl.edu	37	15	101968142	101968142	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000331826	-1	known	p.N259H	1.000	43	0%	70	41.4%	5	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Peptidase_S8,superfamily_Subtilisin-like
RHBDF1	64285	genome.wustl.edu	37	16	112992	112992	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000428730	-1	known	p.G178R	1.000	26	0%	41	43.9%	36	50%	unknown(0)	tolerated(0.07)	-	NULL
LUC7L	55692	genome.wustl.edu	37	16	249118	249118	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_201412.1	-1	validated	p.F210	0.967	119	0%	122	50%	51	39.2%	-	-	-	HMMPfam_LUC7
ITFG3	83986	genome.wustl.edu	37	16	304616	304616	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032039.2	+1	validated	p.F68	1.000	163	0%	172	44.8%	31	38.7%	-	-	-	NULL
FBXL16	146330	genome.wustl.edu	37	16	746902	746902	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_153350.3	-1	validated	p.F168L	0.961	36	0%	43	34.9%	1	100%	possibly_damaging(0.489)	deleterious(0.02)	deleterious(0.545)	superfamily_SSF81383
CCDC78	124093	genome.wustl.edu	37	16	774779	774779	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001031737.2	-1	validated	p.R223C	0.975	16	0%	24	25%	1	0%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	NULL
CHTF18	63922	genome.wustl.edu	37	16	845219	845219	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_022092.2	+1	validated	p.D680Y	0.998	23	0%	36	50%	40	35%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SSTR5	6755	genome.wustl.edu	37	16	1129540	1129540	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001053.3	+1	reviewed	p.I224	0.995	49	0%	171	43.9%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
CACNA1H	8912	genome.wustl.edu	37	16	1256107	1256107	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021098.2	+1	reviewed	p.V869	0.999	23	0%	56	42.9%	10	10%	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CACNA1H	8912	genome.wustl.edu	37	16	1268293	1268293	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021098.2	+1	reviewed	p.F1843	1.000	55	0%	106	38.7%	14	0%	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
BAIAP3	8938	genome.wustl.edu	37	16	1397753	1397753	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003933.3	+1	reviewed	p.E1021K	1.000	15	0%	13	38.5%	10	60%	probably_damaging(0.991)	deleterious(0.03)	deleterious(0.808)	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
PTX4	390667	genome.wustl.edu	37	16	1537465	1537465	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001013658.1	-1	provisional	p.A211	0.000	27	0%	28	25%	0	-	-	-	-	NULL
PTX4	390667	genome.wustl.edu	37	16	1537554	1537554	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001013658.1	-1	provisional	p.P182S	0.000	11	0%	11	45.5%	0	-	benign(0)	tolerated(0.48)	neutral(0.011)	NULL
MAPK8IP3	23162	genome.wustl.edu	37	16	1818560	1818560	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015133.3	+1	reviewed	p.V1274	0.002	26	3.8%	43	37.2%	70	42.8%	-	-	-	NULL
NUBP2	10101	genome.wustl.edu	37	16	1836640	1836640	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012225.2	+1	validated	p.R40H	1.000	29	0%	39	41%	123	47.1%	benign(0.034)	tolerated(0.12)	neutral(0.263)	superfamily_SSF52540
IGFALS	3483	genome.wustl.edu	37	16	1841564	1841564	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004970.2	-1	reviewed	p.T285	1.000	6	0.000	10	0.600	0	-	-	-	-	HMMPfam_LRR_1,superfamily_SSF52047,superfamily_SSF52058
NOXO1	124056	genome.wustl.edu	37	16	2030074	2030074	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_172168.1	-1	provisional	p.C175	0.402	19	0%	29	41.4%	2	50%	-	-	-	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain
CASKIN1	57524	genome.wustl.edu	37	16	2237458	2237458	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020764.3	-1	validated	p.L208I	1.000	58	0%	65	16.9%	10	20%	possibly_damaging(0.895)	deleterious(0)	deleterious(0.797)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
ABCA3	21	genome.wustl.edu	37	16	2358605	2358605	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001089.2	-1	reviewed	p.F377	0.000	93	0%	87	49.4%	0	-	-	-	-	NULL
CCNF	899	genome.wustl.edu	37	16	2505435	2505435	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001761.2	+1	reviewed	p.F585	0.293	42	0%	57	35.1%	24	54.1%	-	-	-	NULL
NTN3	4917	genome.wustl.edu	37	16	2522991	2522991	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006181.1	+1	provisional	p.D375N	1.000	57	0%	56	41.1%	0	-	benign(0.097)	tolerated(0.25)	neutral(0.044)	HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,superfamily_SSF57196
KCTD5	54442	genome.wustl.edu	37	16	2746034	2746034	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018992.3	+1	validated	p.L117	0.740	167	0%	233	24.5%	12	50%	-	-	-	HMMSmart_BTB,HMMPfam_K_tetra,superfamily_BTB/POZ_fold
SRRM2	23524	genome.wustl.edu	37	16	2809026	2809026	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016333.3	+1	validated	p.S212G	1.000	390	0%	462	46.5%	51	41.1%	unknown(0)	-	-	NULL
SRRM2	23524	genome.wustl.edu	37	16	2812614	2812614	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016333.3	+1	validated	p.R695S	0.997	36	0%	60	46.7%	87	37.9%	unknown(0)	-	-	NULL
SRRM2	23524	genome.wustl.edu	37	16	2814089	2814089	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016333.3	+1	validated	p.F1187C	0.931	83	0%	99	41.4%	64	53.1%	unknown(0)	-	-	NULL
SRRM2	23524	genome.wustl.edu	37	16	2815223	2815223	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016333.3	+1	validated	p.S1565Y	0.986	39	0%	46	41.3%	57	47.3%	unknown(0)	-	-	NULL
SRRM2	23524	genome.wustl.edu	37	16	2815417	2815417	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016333.3	+1	validated	p.R1630W	0.520	70	0%	94	57.4%	113	52.2%	unknown(0)	-	-	NULL
SRRM2	23524	genome.wustl.edu	37	16	2815651	2815651	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016333.3	+1	validated	p.R1708C	1.000	57	0%	76	42.1%	188	48.4%	unknown(0)	-	-	NULL
SRRM2	23524	genome.wustl.edu	37	16	2817619	2817619	+	Missense_Mutation	SNP	G	G	A	rs141409262	by1000genomes	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016333.3	+1	validated	p.A2364T	0.955	43	0%	41	34.1%	276	46%	benign(0.039)	-	-	NULL
CLDN9	9080	genome.wustl.edu	37	16	3063371	3063371	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020982.3	+1	reviewed	p.S3L	0.928	80	0%	110	39.1%	2	0%	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	NULL
ZNF213	7760	genome.wustl.edu	37	16	3187510	3187510	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001134655.1	+1	validated	p.E77K	0.905	27	0%	29	41.4%	8	37.5%	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	HMMPfam_SCAN,HMMSmart_SM00431
OR1F1	4992	genome.wustl.edu	37	16	3254400	3254400	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012360.1	+1	provisional	p.D52Y	0.704	288	0%	422	43.1%	2	50%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_7tm_1,superfamily_SSF81321
ZNF200	7752	genome.wustl.edu	37	16	3283659	3283659	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003454.3	-1	validated	p.R33*	0.998	134	0%	181	50.8%	12	50%	-	-	-	NULL
MEFV	4210	genome.wustl.edu	37	16	3297085	3297085	+	Silent	SNP	G	G	A	rs104895099		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000243.2	-1	reviewed	p.I506	0.039	72	0%	124	49.2%	0	-	-	-	-	NULL
ZNF263	10127	genome.wustl.edu	37	16	3339743	3339743	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005741.4	+1	validated	p.E413K	0.851	130	0%	164	41.5%	26	50%	benign(0)	tolerated(1)	-	NULL
TIGD7	91151	genome.wustl.edu	37	16	3349765	3349765	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033208.2	-1	validated	p.F284V	0.688	89	0%	106	13.2%	3	0%	benign(0.15)	tolerated(0.26)	neutral(0.047)	HMMPfam_DDE
NLRC3	197358	genome.wustl.edu	37	16	3592241	3592241	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_178844.2	-1	validated	p.A1019	0.001	112	0%	119	36.1%	0	-	-	-	-	HMMSmart_SM00368,superfamily_RNI-like
CREBBP	1387	genome.wustl.edu	37	16	3823921	3823921	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004380.2	-1	reviewed	p.S765Y	1.000	63	0%	94	37.2%	48	43.7%	probably_damaging(0.999)	tolerated(0.13)	deleterious(0.743)	NULL
ADCY9	115	genome.wustl.edu	37	16	4016169	4016169	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001116.2	-1	reviewed	p.F1223	0.879	170	0%	217	46.5%	8	0%	-	-	-	HMMPfam_Guanylate_cyc,HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain
ADCY9	115	genome.wustl.edu	37	16	4016457	4016457	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001116.2	-1	reviewed	p.D1127	0.023	55	0%	59	39%	5	60%	-	-	-	HMMPfam_Guanylate_cyc,HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain
C16orf71	146562	genome.wustl.edu	37	16	4787868	4787868	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_139170.2	+1	validated	p.S66L	0.778	79	0%	68	22.1%	2	50%	possibly_damaging(0.946)	deleterious(0.01)	deleterious(0.796)	NULL
ZNF500	26048	genome.wustl.edu	37	16	4810554	4810554	+	Silent	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021646.1	-1	validated	p.L233	0.730	81	0%	104	47.1%	14	42.8%	-	-	-	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
SEPT12	124404	genome.wustl.edu	37	16	4834056	4834056	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_144605.3	-1	validated	p.L130M	0.998	119	0%	181	37.6%	0	-	possibly_damaging(0.915)	tolerated(0.18)	neutral(0.422)	HMMPfam_Septin,superfamily_P-loop containing nucleoside triphosphate hydrolases
UBN1	29855	genome.wustl.edu	37	16	4908594	4908594	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001079514.1	+1	validated	p.R121Q	1.000	254	0%	277	10.8%	13	30.7%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	NULL
PPL	5493	genome.wustl.edu	37	16	4947715	4947715	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002705.4	-1	reviewed	p.C311	0.937	76	0%	91	51.6%	63	47.6%	-	-	-	HMMSmart_SM00150,superfamily_Spectrin repeat
RBFOX1	54715	genome.wustl.edu	37	16	7629798	7629798	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_145891.2	+1	reviewed	p.P117L	0.999	164	0%	192	53.6%	0	-	benign(0.014)	tolerated(0.05)	neutral(0.346)	superfamily_SSF54928
RBFOX1	54715	genome.wustl.edu	37	16	7760688	7760688	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_145891.2	+1	reviewed	p.L400F	1.000	370	0.3%	432	37%	0	-	possibly_damaging(0.896)	tolerated(0.1)	deleterious(0.640)	NULL
METTL22	79091	genome.wustl.edu	37	16	8729083	8729083	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024109.2	+1	validated	p.R205Q	0.938	63	0%	75	34.7%	12	50%	benign(0.001)	tolerated(0.68)	neutral(0.002)	HMMPfam_Methyltransf_16,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
GRIN2A	2903	genome.wustl.edu	37	16	9857720	9857720	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000833.3	-1	reviewed	p.H1227	0.008	258	0%	316	44.3%	0	-	-	-	-	HMMPfam_NMDAR2_C
GRIN2A	2903	genome.wustl.edu	37	16	9984928	9984928	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000833.3	-1	reviewed	p.K346T	1.000	147	0%	162	44.4%	0	-	benign(0.299)	tolerated(0.07)	neutral(0.411)	superfamily_Periplasmic binding protein-like I
TEKT5	146279	genome.wustl.edu	37	16	10721508	10721508	+	Missense_Mutation	SNP	C	C	T	rs188259437	by1000genomes	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_144674.1	-1	provisional	p.D464N	1.000	37	0%	35	51.4%	4	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Tektin
SNX29	92017	genome.wustl.edu	37	16	12223495	12223495	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001080530.2	+1	provisional	p.R107Q	1.000	40	0%	58	46.6%	10	30%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	NULL
CPPED1	55313	genome.wustl.edu	37	16	12875076	12875076	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018340.2	-1	validated	p.F85L	0.978	188	0%	226	42%	24	33.3%	benign(0.014)	tolerated(0.72)	neutral(0.002)	HMMPfam_Metallophos,superfamily_Metallo-dependent phosphatases
SHISA9	729993	genome.wustl.edu	37	16	13010667	13010667	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001145204.2	+1	validated	p.N270T	1.000	85	0%	126	43.7%	0	-	benign(0.104)	tolerated(0.14)	neutral(0.258)	NULL
SHISA9	729993	genome.wustl.edu	37	16	13307116	13307116	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001145204.2	+1	validated	p.S326Y	1.000	189	0%	300	47.7%	0	-	probably_damaging(0.978)	tolerated(0.05)	deleterious(0.766)	NULL
ERCC4	2072	genome.wustl.edu	37	16	14042072	14042072	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005236.2	+1	reviewed	p.I873	0.435	169	0%	190	48.9%	6	0%	-	-	-	NULL
MKL2	57496	genome.wustl.edu	37	16	14340860	14340860	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014048.3	+1	validated	p.I581	0.592	37	0%	60	40%	2	100%	-	-	-	NULL
PARN	5073	genome.wustl.edu	37	16	14711473	14711473	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002582.2	-1	reviewed	p.F121C	1.000	166	0%	259	42.1%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CAF1,superfamily_Ribonuclease H-like
NOMO1	23420	genome.wustl.edu	37	16	14970238	14970238	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014287.3	+1	reviewed	p.I793	0.994	421	0%	542	45.2%	58	39.6%	-	-	-	NULL
PDXDC1	23042	genome.wustl.edu	37	16	15092232	15092232	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015027.2	+1	validated	p.S44F	0.640	248	0%	258	22.9%	40	40%	possibly_damaging(0.746)	tolerated(0.25)	neutral(0.311)	superfamily_PLP-dependent transferases
PDXDC1	23042	genome.wustl.edu	37	16	15103568	15103568	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015027.2	+1	validated	p.D227Y	1.000	545	0.2%	582	17.2%	65	23%	benign(0.353)	deleterious(0.04)	neutral(0.460)	HMMPfam_Pyridoxal_deC,superfamily_PLP-dependent transferases
KIAA0430	9665	genome.wustl.edu	37	16	15698057	15698057	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014647.3	-1	validated	p.E1461K	1.000	101	0%	104	30.8%	11	63.6%	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	NULL
KIAA0430	9665	genome.wustl.edu	37	16	15711236	15711236	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014647.3	-1	validated	p.T959	0.001	61	0%	54	38.9%	2	0%	-	-	-	NULL
MYH11	4629	genome.wustl.edu	37	16	15872639	15872639	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001040114.1	-1	reviewed	p.T270I	1.000	148	0%	229	36.2%	1	0%	probably_damaging(0.973)	deleterious(0.02)	deleterious(0.798)	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
NOMO3	408050	genome.wustl.edu	37	16	16338999	16338999	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001004067.2	+1	reviewed	p.K159N	0.866	425	0.2%	497	18.7%	10	30%	benign(0)	tolerated(0.45)	neutral(0.012)	HMMPfam_Cna_B,superfamily_Starch-binding domain-like
SMG1	23049	genome.wustl.edu	37	16	18858832	18858832	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015092.4	-1	reviewed	p.R1980Q	1.000	132	0%	201	47.8%	9	44.4%	probably_damaging(0.997)	deleterious(0.02)	deleterious(0.849)	NULL
SMG1	23049	genome.wustl.edu	37	16	18883575	18883575	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015092.4	-1	reviewed	p.K705T	1.000	91	0%	107	39.3%	1	100%	possibly_damaging(0.564)	tolerated(0.44)	neutral(0.205)	NULL
SYT17	51760	genome.wustl.edu	37	16	19191860	19191860	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016524.2	+1	validated	p.S110	0.939	31	0%	59	39%	8	50%	-	-	-	NULL
TMC5	79838	genome.wustl.edu	37	16	19481130	19481130	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001105248.1	+1	validated	p.L589I	1.000	107	0%	184	41.3%	6	33.3%	benign(0.109)	tolerated(1)	neutral(0.009)	NULL
C16orf62	57020	genome.wustl.edu	37	16	19693580	19693580	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020314.4	+1	predicted	p.R799*	1.000	281	0%	340	45.3%	26	7.6%	-	-	-	NULL
IQCK	124152	genome.wustl.edu	37	16	19746686	19746686	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_153208.1	+1	provisional	p.E130*	1.000	321	0%	330	18.8%	4	0%	-	-	-	NULL
GP2	2813	genome.wustl.edu	37	16	20329667	20329667	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001007240.1	-1	validated	p.E368K	0.975	171	0%	265	46.8%	3	0%	probably_damaging(0.985)	tolerated(0.41)	neutral(0.447)	HMMPfam_Zona_pellucida,HMMSmart_SM00241
PDILT	204474	genome.wustl.edu	37	16	20370844	20370844	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_174924.1	-1	provisional	p.A518T	0.000	208	0%	309	48.2%	0	-	benign(0.002)	tolerated(0.07)	neutral(0.319)	NULL
ACSM1	116285	genome.wustl.edu	37	16	20638573	20638573	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_052956.2	-1	validated	p.K455N	0.000	266	0%	340	28.2%	4	0%	benign(0)	tolerated(0.19)	neutral(0.050)	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
ACSM1	116285	genome.wustl.edu	37	16	20673143	20673143	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_052956.2	-1	validated	p.R322Q	1.000	228	0%	275	42.2%	1	100%	probably_damaging(0.976)	deleterious(0)	deleterious(0.863)	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
ACSM3	6296	genome.wustl.edu	37	16	20803433	20803433	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005622.3	+1	validated	p.D479A	0.999	579	0%	686	44%	15	46.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
LOC81691	81691	genome.wustl.edu	37	16	20856128	20856128	+	Missense_Mutation	SNP	G	G	T	rs181905689	by1000genomes	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_030941.2	+1	validated	p.D633Y	1.000	126	0%	175	42.9%	1	0%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMSmart_SM00360,superfamily_RNA-binding domain RBD
DNAH3	55567	genome.wustl.edu	37	16	20947991	20947991	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017539.1	-1	provisional	p.A3947T	0.958	47	0%	55	56.4%	0	-	benign(0.004)	tolerated(0.54)	neutral(0.007)	HMMPfam_Dynein_heavy
DNAH3	55567	genome.wustl.edu	37	16	20974883	20974883	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017539.1	-1	provisional	p.Q3441	0.000	97	0%	170	47.1%	1	100%	-	-	-	HMMPfam_Dynein_heavy
DNAH3	55567	genome.wustl.edu	37	16	20976706	20976706	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017539.1	-1	provisional	p.L2834I	1.000	99	0%	107	37.4%	0	-	possibly_damaging(0.913)	deleterious(0)	deleterious(0.809)	NULL
DNAH3	55567	genome.wustl.edu	37	16	20986665	20986665	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017539.1	-1	provisional	p.M2717L	1.000	322	0%	420	43.1%	0	-	benign(0)	tolerated(1)	-	NULL
DNAH3	55567	genome.wustl.edu	37	16	20996989	20996989	+	Nonsense_Mutation	SNP	G	G	A	rs149230256	by1000genomes	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017539.1	-1	provisional	p.R2359*	1.000	96	0%	112	40.2%	0	-	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH3	55567	genome.wustl.edu	37	16	21011583	21011583	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017539.1	-1	provisional	p.F2128	0.980	136	0%	258	39.9%	1	100%	-	-	-	HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases
HS3ST2	9956	genome.wustl.edu	37	16	22826293	22826293	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006043.1	+1	reviewed	p.G121D	1.000	6	0.000	14	0.500	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sulfotransfer_1,superfamily_SSF52540
USP31	57478	genome.wustl.edu	37	16	23079618	23079618	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020718.3	-1	validated	p.E1270K	0.856	96	0%	103	18.4%	0	-	benign(0)	tolerated(0.32)	neutral(0.024)	NULL
PRKCB	5579	genome.wustl.edu	37	16	24104189	24104189	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002738.6	+1	reviewed	p.D203N	1.000	349	0%	383	41.3%	0	-	possibly_damaging(0.828)	deleterious(0)	deleterious(0.758)	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
RBBP6	5930	genome.wustl.edu	37	16	24581699	24581699	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006910.4	+1	reviewed	p.E1230*	1.000	144	0%	131	38.2%	3	33.3%	-	-	-	NULL
TNRC6A	27327	genome.wustl.edu	37	16	24788596	24788596	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014494.2	+1	reviewed	p.L169S	1.000	69	0%	95	48.4%	7	85.7%	benign(0.418)	tolerated(0.54)	neutral(0.143)	NULL
TNRC6A	27327	genome.wustl.edu	37	16	24815565	24815565	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000450465	+1	known	p.G194S	1.000	163	0%	202	41.1%	12	41.6%	-	-	-	NULL
SLC5A11	115584	genome.wustl.edu	37	16	24902236	24902236	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_052944.2	+1	provisional	p.F237L	0.167	141	0%	144	49.3%	0	-	benign(0.311)	tolerated(0.59)	neutral(0.102)	HMMPfam_SSF
SLC5A11	115584	genome.wustl.edu	37	16	24909415	24909415	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_052944.2	+1	provisional	p.R331C	1.000	82	0%	136	39%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SSF
ZKSCAN2	342357	genome.wustl.edu	37	16	25251972	25251972	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001012981.4	-1	validated	p.S690Y	0.505	288	0%	339	41.6%	1	100%	possibly_damaging(0.805)	deleterious(0)	deleterious(0.748)	NULL
JMJD5	79831	genome.wustl.edu	37	16	27221649	27221649	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001145348.1	+1	reviewed	p.E107K	1.000	5	0.000	9	0.444	5	80%	benign(0.093)	deleterious(0.04)	neutral(0.356)	NULL
IL21R	50615	genome.wustl.edu	37	16	27455897	27455897	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021798.2	+1	reviewed	p.R181I	0.005	87	0%	139	12.2%	0	-	possibly_damaging(0.925)	deleterious(0.02)	deleterious(0.756)	superfamily_Fibronectin type III
KIAA0556	23247	genome.wustl.edu	37	16	27709696	27709696	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015202.2	+1	validated	p.L330I	0.000	34	0%	32	40.6%	5	60%	benign(0.001)	tolerated(0.93)	-	NULL
KIAA0556	23247	genome.wustl.edu	37	16	27760917	27760917	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015202.2	+1	validated	p.S879Y	0.003	15	0%	26	50%	29	37.9%	possibly_damaging(0.91)	deleterious(0.03)	deleterious(0.727)	NULL
XPO6	23214	genome.wustl.edu	37	16	28123173	28123173	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015171.2	-1	provisional	p.A769D	0.320	123	0%	184	49.5%	57	52.6%	benign(0.025)	tolerated(0.14)	neutral(0.251)	superfamily_ARM repeat
APOBR	55911	genome.wustl.edu	37	16	28508249	28508249	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018690.2	+1	reviewed	p.R620	0.000	35	0%	46	43.5%	1	0%	-	-	-	NULL
TUFM	7284	genome.wustl.edu	37	16	28856681	28856681	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003321.4	-1	reviewed	p.R123H	1.000	54	0%	94	45.7%	614	50.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_GTP_EFTU,superfamily_P-loop containing nucleoside triphosphate hydrolases
CD19	930	genome.wustl.edu	37	16	28946859	28946859	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001770.5	+1	reviewed	p.I310M	0.944	373	0%	495	47.3%	0	-	possibly_damaging(0.951)	deleterious(0.05)	deleterious(0.740)	NULL
LOC100289169	100289169	genome.wustl.edu	37	16	29063835	29063835	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_002343436.1	+1	model	p.K146T	0.328	22	0%	46	43.5%	1	0%	benign(0.35)	deleterious(0.01)	deleterious(0.517)	NULL
CDIPT	10423	genome.wustl.edu	37	16	29874016	29874016	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006319.3	-1	validated	p.I23	1.000	88	0%	115	47%	125	34.4%	-	-	-	NULL
SEZ6L2	26470	genome.wustl.edu	37	16	29908168	29908168	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_201575.2	-1	validated	p.T162	0.811	72	0%	106	51.9%	39	38.4%	-	-	-	NULL
HIRIP3	8479	genome.wustl.edu	37	16	30005749	30005749	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003609.2	-1	reviewed	p.R239S	0.007	424	0%	561	42.2%	7	57.1%	possibly_damaging(0.444)	tolerated(0.3)	neutral(0.173)	NULL
ALDOA	226	genome.wustl.edu	37	16	30080927	30080927	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000034.2	+1	reviewed	p.F244L	0.746	96	0%	113	46%	2327	53.4%	benign(0.019)	tolerated(0.51)	neutral(0.010)	HMMPfam_Glycolytic,superfamily_SSF51569
CORO1A	11151	genome.wustl.edu	37	16	30197941	30197941	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007074.2	+1	validated	p.A74V	0.025	37	0%	44	47.7%	29	0%	benign(0)	tolerated(0.17)	neutral(0.059)	HMMSmart_SM00320,HMMPfam_WD40
ITGAL	3683	genome.wustl.edu	37	16	30492807	30492807	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002209.2	+1	reviewed	p.F208L	0.983	267	0%	328	42.1%	2	0%	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like,superfamily_Integrin alpha N-terminal domain
SRCAP	10847	genome.wustl.edu	37	16	30727510	30727510	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006662.2	+1	validated	p.M873V	1.000	202	0%	247	43.7%	19	10.5%	unknown(0)	-	-	HMMPfam_SNF2_N
SRCAP	10847	genome.wustl.edu	37	16	30749222	30749222	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006662.2	+1	validated	p.E2621*	1.000	57	0%	60	51.7%	42	54.7%	-	-	-	NULL
STX1B	112755	genome.wustl.edu	37	16	31012859	31012859	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_052874.3	-1	validated	p.F32L	1.000	36	0%	41	31.7%	0	-	possibly_damaging(0.914)	deleterious(0)	deleterious(0.810)	HMMPfam_Syntaxin,HMMSmart_SM00503,superfamily_t-snare proteins
ZNF646	9726	genome.wustl.edu	37	16	31088883	31088883	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014699.3	+1	validated	p.A413V	0.832	70	0%	50	46%	6	33.3%	probably_damaging(0.99)	tolerated(0.69)	neutral(0.444)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
PRSS53	339105	genome.wustl.edu	37	16	31097319	31097319	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001039503.2	-1	validated	p.E283D	0.000	92	0%	96	29.2%	2	50%	benign(0.001)	tolerated(0.64)	neutral(0.003)	NULL
BCKDK	10295	genome.wustl.edu	37	16	31121745	31121745	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005881.2	+1	validated	p.F189L	1.000	106	0%	99	15.2%	76	21%	benign(0.22)	deleterious(0)	neutral(0.466)	HMMPfam_BCDHK_Adom3,superfamily_alpha-ketoacid dehydrogenase kinase N-terminal domain
KAT8	84148	genome.wustl.edu	37	16	31138600	31138600	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_182958.2	+1	validated	p.K203E	1.000	76	0%	120	47.5%	42	50%	benign(0.143)	tolerated(0.14)	neutral(0.262)	superfamily_Acyl-CoA N-acyltransferases (Nat)
PRSS8	5652	genome.wustl.edu	37	16	31144178	31144178	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002773.3	-1	reviewed	p.I121	0.001	138	0%	192	41.1%	755	43.3%	-	-	-	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
ITGAM	3684	genome.wustl.edu	37	16	31282340	31282340	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000632.3	+1	reviewed	p.D165Y	0.895	194	0%	231	10%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_VWA,HMMSmart_VWA,superfamily_SSF53300,superfamily_SSF69318
ITGAX	3687	genome.wustl.edu	37	16	31368580	31368580	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000887.3	+1	reviewed	p.G109S	1.000	15	0%	14	71.4%	1	0%	probably_damaging(1)	tolerated(0.26)	deleterious(0.534)	superfamily_SSF69318
ITGAX	3687	genome.wustl.edu	37	16	31371267	31371267	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000887.3	+1	reviewed	p.K196N	0.000	205	0%	235	26%	0	-	benign(0)	tolerated(0.36)	neutral(0.020)	HMMPfam_VWA,HMMSmart_VWA,superfamily_SSF53300,superfamily_SSF69318
ITGAD	3681	genome.wustl.edu	37	16	31435264	31435264	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005353.2	+1	validated	p.F1048	0.577	75	0%	94	40.4%	0	-	-	-	-	NULL
SLC5A2	6524	genome.wustl.edu	37	16	31496236	31496236	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003041.3	+1	reviewed	p.E99K	1.000	126	0%	150	42.7%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_SSF
ZNF267	10308	genome.wustl.edu	37	16	31925796	31925796	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003414.4	+1	validated	e4-1	0.911	118	0%	162	13%	0	-	-	-	-	-
ZNF267	10308	genome.wustl.edu	37	16	31926606	31926606	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003414.4	+1	validated	p.E346K	0.930	142	0%	187	43.3%	3	0%	possibly_damaging(0.624)	deleterious(0.01)	deleterious(0.623)	superfamily_C2H2 and C2HC zinc fingers
ENSG00000198229	0	genome.wustl.edu	37	16	32077613	32077613	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000354689	+1	known	p.K76N	0.266	232	0%	349	35.2%	0	-	benign(0.002)	tolerated(0.07)	neutral(0.319)	HMMSmart_SM00406,HMMPfam_V-set,superfamily_Immunoglobulin
LOC401847	401847	genome.wustl.edu	37	16	33605638	33605638	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_001718104.2	+1	model	p.N103H	1.000	155	0%	219	26.9%	0	-	-	-	-	HMMSmart_SM00406,HMMPfam_V-set,superfamily_Immunoglobulin
LOC401847	401847	genome.wustl.edu	37	16	33605672	33605672	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_001718104.2	+1	model	p.Y114C	1.000	99	0%	161	36%	0	-	-	-	-	HMMSmart_SM00406,HMMPfam_V-set,superfamily_Immunoglobulin
DNAJA2	10294	genome.wustl.edu	37	16	46991120	46991120	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005880.3	-1	reviewed	p.L354I	1.000	149	0%	200	43.5%	60	41.6%	benign(0.006)	tolerated(0.52)	neutral(0.009)	HMMPfam_DnaJ_C
NETO2	81831	genome.wustl.edu	37	16	47156685	47156685	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018092.3	-1	reviewed	p.F179	0.998	193	0%	246	47.2%	1	0%	-	-	-	HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
ITFG1	81533	genome.wustl.edu	37	16	47294557	47294557	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_030790.3	-1	provisional	p.C374R	1.000	219	0%	328	43%	22	36.3%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	superfamily_SSF69318
ABCC11	85320	genome.wustl.edu	37	16	48261823	48261823	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032583.3	-1	reviewed	p.V97M	0.000	160	0%	193	46.1%	0	-	benign(0)	tolerated(0.22)	neutral(0.042)	NULL
N4BP1	9683	genome.wustl.edu	37	16	48595438	48595438	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_153029.3	-1	validated	p.G372	0.996	177	0%	156	44.2%	0	-	-	-	-	NULL
N4BP1	9683	genome.wustl.edu	37	16	48595715	48595715	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_153029.3	-1	validated	p.R280I	0.743	145	0%	152	41.4%	2	0%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
ZNF423	23090	genome.wustl.edu	37	16	49671691	49671691	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015069.2	-1	reviewed	p.E458K	1.000	113	0.9%	133	42.1%	55	36.3%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2
HEATR3	55027	genome.wustl.edu	37	16	50128615	50128615	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_182922.2	+1	provisional	e12-1	1.000	275	0%	263	40.7%	0	-	-	-	-	-
HEATR3	55027	genome.wustl.edu	37	16	50136289	50136289	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_182922.2	+1	provisional	p.S621	0.000	208	0.5%	237	46.8%	3	33.3%	-	-	-	superfamily_ARM repeat
CHD9	80205	genome.wustl.edu	37	16	53289551	53289551	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_025134.4	+1	validated	p.R1357*	1.000	231	0%	265	45.7%	5	20%	-	-	-	superfamily_SSF52540
AKTIP	64400	genome.wustl.edu	37	16	53528907	53528907	+	Silent	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000453503	-1	known	p.L164	0.720	54	0%	54	42.6%	0	-	-	-	-	NULL
RPGRIP1L	23322	genome.wustl.edu	37	16	53720370	53720370	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015272.2	-1	reviewed	p.R251*	1.000	279	0%	356	41.3%	1	0%	-	-	-	NULL
IRX6	79190	genome.wustl.edu	37	16	55361504	55361504	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024335.2	+1	validated	p.G140	0.001	81	0%	119	35.3%	0	-	-	-	-	superfamily_Homeodomain-like
CES1	1066	genome.wustl.edu	37	16	55854348	55854348	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001025195.1	-1	reviewed	p.S246Y	0.985	123	0%	182	25.8%	0	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_COesterase,superfamily_SSF53474
CES5A	221223	genome.wustl.edu	37	16	55897341	55897341	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001143685.1	-1	validated	p.G243	0.005	108	0%	194	43.8%	0	-	-	-	-	HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases
GNAO1	2775	genome.wustl.edu	37	16	56370698	56370698	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020988.2	+1	validated	p.E217K	1.000	72	0%	82	39%	2	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_G-alpha,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases
OGFOD1	55239	genome.wustl.edu	37	16	56501900	56501900	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018233.3	+1	validated	p.S290	0.997	187	0%	219	44.3%	5	60%	-	-	-	HMMPfam_Ofd1_CTDD
BBS2	583	genome.wustl.edu	37	16	56545168	56545168	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_031885.3	-1	reviewed	p.L125P	1.000	127	0%	192	42.7%	9	66.6%	probably_damaging(0.96)	deleterious(0.02)	deleterious(0.786)	superfamily_WD40 repeat-like
MT1E	4493	genome.wustl.edu	37	16	56660460	56660460	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000330439	+1	known	p.I37	0.000	165	0.6%	224	46.4%	1	0%	-	-	-	HMMPfam_Metallothio,superfamily_Metallothionein_sfam
NLRC5	84166	genome.wustl.edu	37	16	57062272	57062272	+	Missense_Mutation	SNP	C	C	A	rs190325	byCluster	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032206.3	+1	validated	p.L740I	0.002	111	0%	132	37.9%	7	14.2%	benign(0.389)	tolerated(0.39)	neutral(0.141)	HMMSmart_SM00368,superfamily_RNI-like
CCDC135	84229	genome.wustl.edu	37	16	57765158	57765158	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032269.5	+1	validated	p.K871N	0.033	98	0%	98	48%	1	0%	possibly_damaging(0.586)	deleterious(0.03)	deleterious(0.567)	NULL
ZNF319	57567	genome.wustl.edu	37	16	58030756	58030756	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020807.1	-1	provisional	p.E472K	0.995	31	0%	49	57.1%	11	45.4%	probably_damaging(0.957)	tolerated(0.65)	neutral(0.404)	HMMSmart_ZnF_C2H2,superfamily_SSF57667
C16orf80	29105	genome.wustl.edu	37	16	58149954	58149954	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_013242.2	-1	validated	p.F89	0.991	215	0%	281	44.8%	28	50%	-	-	-	HMMPfam_DUF667
GINS3	64785	genome.wustl.edu	37	16	58437152	58437152	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001126129.1	+1	reviewed	p.G152W	1.000	80	0%	119	16%	1	100%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Psf3
CNOT1	23019	genome.wustl.edu	37	16	58555148	58555148	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016284.3	-1	validated	p.K2331Q	1.000	248	0%	292	15.1%	42	26.1%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Not1
CNOT1	23019	genome.wustl.edu	37	16	58573745	58573745	+	Missense_Mutation	SNP	C	C	T	rs181822641	by1000genomes	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016284.3	-1	validated	p.R1640Q	1.000	186	0.5%	244	42.6%	43	34.8%	benign(0.161)	tolerated(0.37)	neutral(0.034)	NULL
CNOT1	23019	genome.wustl.edu	37	16	58579321	58579321	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016284.3	-1	validated	p.D1361N	1.000	497	0%	671	17.4%	283	15.1%	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	NULL
CNOT1	23019	genome.wustl.edu	37	16	58589811	58589811	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016284.3	-1	validated	p.S827	1.000	176	0%	242	47.9%	23	47.8%	-	-	-	NULL
TK2	7084	genome.wustl.edu	37	16	66582890	66582890	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004614.4	-1	reviewed	p.K91N	1.000	371	0%	414	49.5%	12	50%	possibly_damaging(0.952)	deleterious(0.01)	deleterious(0.801)	superfamily_P-loop containing nucleoside triphosphate hydrolases
CMTM1	113540	genome.wustl.edu	37	16	66612769	66612769	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_052999.3	+1	reviewed	p.I242	0.002	116	0%	170	36.5%	2	0%	-	-	-	HMMPfam_MARVEL
DYNC1LI2	1783	genome.wustl.edu	37	16	66776427	66776427	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006141.2	-1	validated	p.S148Y	1.000	240	1.3%	338	42%	5	20%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_DLIC,superfamily_P-loop containing nucleoside triphosphate hydrolases
CCDC79	283847	genome.wustl.edu	37	16	66792720	66792720	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001136505.1	-1	provisional	p.R651I	1.000	430	0%	448	42.6%	0	-	possibly_damaging(0.918)	deleterious(0)	deleterious(0.813)	NULL
CDH16	1014	genome.wustl.edu	37	16	66950035	66950035	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004062.2	-1	reviewed	p.E119D	1.000	113	0%	120	17.5%	0	-	benign(0.076)	tolerated(0.09)	neutral(0.302)	HMMSmart_SM00112
KCTD19	146212	genome.wustl.edu	37	16	67327843	67327843	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001100915.1	-1	provisional	p.P608S	0.959	210	0%	240	40.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LRRC36	55282	genome.wustl.edu	37	16	67418910	67418910	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018296.5	+1	validated	p.S728Y	1.000	72	0%	116	39.7%	1	100%	benign(0.293)	deleterious(0)	deleterious(0.535)	NULL
RLTPR	146206	genome.wustl.edu	37	16	67688765	67688765	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001013838.1	+1	provisional	p.S1223G	0.968	50	0%	61	34.4%	1	0%	possibly_damaging(0.444)	tolerated(0.31)	neutral(0.172)	NULL
GFOD2	81577	genome.wustl.edu	37	16	67709621	67709621	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_030819.3	-1	validated	p.G199R	1.000	16	0%	45	53.3%	50	42%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_GFO_IDH_MocA_C,superfamily_Glyceraldehyde-3-phosphate dehydrogenase-like C-terminal domain
TSNAXIP1	55815	genome.wustl.edu	37	16	67854847	67854847	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018430.2	+1	validated	p.R31*	0.003	82	0%	81	51.9%	0	-	-	-	-	NULL
EDC4	23644	genome.wustl.edu	37	16	67909953	67909953	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014329.3	+1	validated	p.K63T	0.997	49	0%	74	48.6%	22	54.5%	possibly_damaging(0.679)	tolerated(0.07)	deleterious(0.561)	NULL
SLC7A6	9057	genome.wustl.edu	37	16	68308738	68308738	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001076785.1	+1	validated	p.E37K	0.966	205	0%	227	38.8%	3	0%	benign(0.024)	tolerated(0.28)	neutral(0.033)	NULL
ZFP90	146198	genome.wustl.edu	37	16	68597511	68597511	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000327567	+1	known	p.E46*	1.000	122	0%	163	46%	6	0%	-	-	-	NULL
ZFP90	146198	genome.wustl.edu	37	16	68598159	68598159	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_133458.2	+1	provisional	p.S490Y	0.227	125	0%	224	37.1%	11	45.4%	probably_damaging(0.965)	deleterious(0.01)	deleterious(0.812)	superfamily_C2H2 and C2HC zinc fingers
TMCO7	79613	genome.wustl.edu	37	16	68936244	68936244	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024562.1	+1	validated	p.E502*	1.000	206	0%	266	41.4%	0	-	-	-	-	superfamily_ARM repeat,HMMPfam_DUF2435
TMCO7	79613	genome.wustl.edu	37	16	68943271	68943271	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024562.1	+1	validated	p.R653I	0.766	85	0%	97	43.3%	7	42.8%	possibly_damaging(0.465)	tolerated(0.4)	neutral(0.169)	superfamily_ARM repeat,HMMPfam_DUF2435
COG8	84342	genome.wustl.edu	37	16	69368768	69368768	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032382.4	-1	reviewed	p.S357G	1.000	59	0%	73	46.6%	9	22.2%	benign(0.319)	tolerated(0.34)	neutral(0.122)	HMMPfam_Dor1
DDX19A	55308	genome.wustl.edu	37	16	70399022	70399022	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018332.3	+1	provisional	p.R198*	1.000	154	0%	249	41%	13	0%	-	-	-	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
COG4	25839	genome.wustl.edu	37	16	70543207	70543207	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015386.2	-1	validated	p.L310R	1.000	360	0%	486	48.6%	39	41%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_COG4,HMMSmart_SM00762
SF3B3	23450	genome.wustl.edu	37	16	70601423	70601423	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012426.4	+1	reviewed	p.R979Q	1.000	332	0.3%	440	44.3%	106	39.6%	probably_damaging(0.985)	deleterious(0)	deleterious(0.877)	HMMPfam_CPSF_A
SF3B3	23450	genome.wustl.edu	37	16	70602279	70602279	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012426.4	+1	reviewed	p.R1016C	1.000	261	0%	356	43.5%	171	42.1%	probably_damaging(0.982)	tolerated(0.11)	deleterious(0.698)	HMMPfam_CPSF_A
HYDIN	54768	genome.wustl.edu	37	16	70841825	70841825	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032821.2	-1	validated	p.L5007	0.000	81	0%	92	43.5%	3	100%	-	-	-	NULL
HYDIN	54768	genome.wustl.edu	37	16	70862324	70862324	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032821.2	-1	validated	p.L4706	1.000	63	0%	70	41.4%	1	100%	-	-	-	NULL
HYDIN	54768	genome.wustl.edu	37	16	70897084	70897084	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032821.2	-1	validated	p.F3824I	0.002	125	0%	175	11.4%	0	-	benign(0.016)	tolerated(0.09)	neutral(0.297)	NULL
HYDIN	54768	genome.wustl.edu	37	16	70913645	70913645	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032821.2	-1	validated	p.I3409	0.997	259	0%	318	23.9%	1	0%	-	-	-	NULL
HYDIN	54768	genome.wustl.edu	37	16	70975704	70975704	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032821.2	-1	validated	p.G2229R	1.000	109	0%	178	30.9%	3	33.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_P-loop containing nucleoside triphosphate hydrolases
HYDIN	54768	genome.wustl.edu	37	16	71127814	71127814	+	Missense_Mutation	SNP	C	C	T	rs77201281	byCluster	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032821.2	-1	validated	p.R451Q	1.000	138	0%	180	32.2%	0	-	benign(0.411)	tolerated(0.63)	neutral(0.137)	NULL
FTSJD1	55783	genome.wustl.edu	37	16	71318152	71318152	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001099642.1	-1	validated	p.E558K	1.000	99	0%	105	38.1%	3	0%	benign(0.013)	deleterious(0.01)	neutral(0.406)	NULL
ATXN1L	342371	genome.wustl.edu	37	16	71883776	71883776	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001137675.2	+1	validated	p.W45R	0.918	47	0%	81	42%	23	34.7%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
PKD1L3	342372	genome.wustl.edu	37	16	71976495	71976495	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000335106	-1	known	p.K1429T	0.000	120	0%	129	41.1%	0	-	-	-	-	NULL
PKD1L3	342372	genome.wustl.edu	37	16	72020157	72020157	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000335106	-1	known	p.S266Y	0.000	222	0%	288	38.9%	0	-	-	-	-	NULL
HP	3240	genome.wustl.edu	37	16	72094540	72094540	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005143.3	+1	reviewed	p.P324	0.000	173	0.6%	206	23.8%	0	-	-	-	-	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
ZFHX3	463	genome.wustl.edu	37	16	72822728	72822728	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006885.3	-1	reviewed	p.P3149	1.000	38	0%	90	11.1%	28	0%	-	-	-	NULL
ZFHX3	463	genome.wustl.edu	37	16	72831570	72831570	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006885.3	-1	reviewed	p.A1671S	0.790	126	0%	179	40.8%	13	46.1%	unknown(0)	-	-	NULL
ZFHX3	463	genome.wustl.edu	37	16	72832604	72832604	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006885.3	-1	reviewed	p.E1326G	1.000	46	0%	39	51.3%	8	50%	unknown(0)	-	-	NULL
ZFHX3	463	genome.wustl.edu	37	16	72863756	72863756	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006885.3	-1	reviewed	p.E1151*	1.000	224	0%	300	46%	4	75%	-	-	-	NULL
ZFHX3	463	genome.wustl.edu	37	16	72992208	72992208	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006885.3	-1	reviewed	p.D613N	1.000	131	0%	163	37.4%	5	0%	unknown(0)	-	-	NULL
LOC100289496	100289496	genome.wustl.edu	37	16	73161370	73161370	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_002344114.1	-1	model	p.D131N	0.000	138	0%	244	48%	0	-	possibly_damaging(0.507)	-	-	NULL
LOC100132346	100132346	genome.wustl.edu	37	16	74646658	74646658	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_001726790.2	-1	model	p.A49T	0.987	45	0%	40	45%	0	-	-	-	-	HMMPfam_Cpn10,superfamily_GroES-like
MLKL	197259	genome.wustl.edu	37	16	74726279	74726279	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152649.2	-1	validated	p.E166*	0.008	337	0%	371	39.9%	0	-	-	-	-	NULL
ZFP1	162239	genome.wustl.edu	37	16	75203298	75203298	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_153688.2	+1	validated	p.V97A	0.948	139	0%	161	41%	0	-	benign(0.366)	tolerated(0.1)	neutral(0.403)	NULL
ZFP1	162239	genome.wustl.edu	37	16	75203923	75203923	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_153688.2	+1	validated	p.F305L	0.997	141	0.7%	164	42.1%	9	44.4%	possibly_damaging(0.74)	deleterious(0.01)	deleterious(0.677)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
CHST6	4166	genome.wustl.edu	37	16	75512546	75512546	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021615.4	-1	reviewed	p.R394Q	0.000	22	0%	45	26.7%	48	66.6%	benign(0.097)	tolerated(0.31)	neutral(0.035)	NULL
KARS	3735	genome.wustl.edu	37	16	75669843	75669843	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001130089.1	-1	reviewed	p.M240I	1.000	190	0%	238	45.4%	131	45.8%	benign(0.23)	deleterious(0.03)	neutral(0.388)	superfamily_Nucleic_acid_OB
CNTNAP4	85445	genome.wustl.edu	37	16	76587219	76587219	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_138994.3	+1	validated	p.A1088V	0.518	22	0%	32	25%	0	-	benign(0.005)	deleterious(0.03)	neutral(0.364)	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
MON1B	22879	genome.wustl.edu	37	16	77232089	77232089	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014940.2	+1	validated	p.R510C	1.000	201	0.5%	256	43.4%	51	50.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Mon1
GCSH	2653	genome.wustl.edu	37	16	81124262	81124262	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004483.4	-1	reviewed	p.E58K	1.000	602	0%	654	41.3%	33	45.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_GCV_H,superfamily_Single hybrid motif
PKD1L2	114780	genome.wustl.edu	37	16	81134756	81134756	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_052892.3	-1	reviewed	p.D2451N	0.000	184	0%	175	45.7%	2	50%	unknown(0)	-	-	NULL
PKD1L2	114780	genome.wustl.edu	37	16	81204680	81204680	+	Splice_Site	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001076780.1	-1	reviewed	e17-1	1.000	48	0%	58	56.9%	0	-	-	-	-	-
CMIP	80790	genome.wustl.edu	37	16	81654499	81654499	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_198390.2	+1	validated	p.R149*	0.998	136	0%	167	43.7%	8	12.5%	-	-	-	superfamily_PH domain-like
PLCG2	5336	genome.wustl.edu	37	16	81968079	81968079	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002661.2	+1	validated	p.E929K	1.000	109	0%	165	46.7%	6	33.3%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_PI-PLC-Y,superfamily_PLC-like_Pdiesterase_TIM-brl
HSBP1	3281	genome.wustl.edu	37	16	83842927	83842927	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001537.2	+1	reviewed	p.R44C	1.000	154	0%	262	12.2%	591	20.9%	benign(0.078)	deleterious(0.02)	neutral(0.389)	HMMPfam_HSBP1
SLC38A8	146167	genome.wustl.edu	37	16	84046628	84046628	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001080442.1	-1	provisional	p.E398K	0.961	116	0%	142	44.4%	0	-	possibly_damaging(0.61)	deleterious(0.03)	deleterious(0.576)	NULL
HSDL1	83693	genome.wustl.edu	37	16	84163651	84163651	+	Silent	SNP	C	C	T	rs148654230	by1000genomes	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_031463.4	-1	validated	p.T202	0.691	137	0%	152	44.7%	8	25%	-	-	-	HMMPfam_adh_short,superfamily_NAD(P)-binding Rossmann-fold domains
USP10	9100	genome.wustl.edu	37	16	84801927	84801927	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005153.2	+1	reviewed	p.E654A	1.000	136	0%	157	39.5%	44	61.3%	unknown(0)	-	-	HMMPfam_UCH,superfamily_SSF54001
CRISPLD2	83716	genome.wustl.edu	37	16	84922924	84922924	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_031476.3	+1	validated	p.K465T	1.000	108	0%	138	42%	9	55.5%	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	HMMPfam_LCCL,HMMSmart_SM00603,superfamily_LCCL domain
KIAA0513	9764	genome.wustl.edu	37	16	85120705	85120705	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014732.2	+1	validated	p.F373	0.779	125	0%	153	39.2%	2	50%	-	-	-	NULL
KIAA0182	23199	genome.wustl.edu	37	16	85689393	85689393	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014615.2	+1	validated	p.G287S	0.995	50	0%	59	37.3%	17	29.4%	unknown(0)	tolerated(0.06)	-	NULL
KIAA0182	23199	genome.wustl.edu	37	16	85694826	85694826	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014615.2	+1	validated	p.S572L	1.000	9	0.000	13	0.308	37	24.3%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
KIAA0182	23199	genome.wustl.edu	37	16	85697160	85697160	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014615.2	+1	validated	p.E862*	1.000	105	0%	138	41.3%	24	37.5%	-	-	-	NULL
GINS2	51659	genome.wustl.edu	37	16	85712254	85712254	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016095.2	-1	validated	p.P108	0.947	110	0%	162	28.4%	30	16.6%	-	-	-	HMMPfam_Psf2
ZCCHC14	23174	genome.wustl.edu	37	16	87446522	87446522	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015144.2	-1	validated	p.F465S	0.959	60	0%	78	44.9%	13	61.5%	unknown(0)	tolerated(0.19)	-	NULL
CA5A	763	genome.wustl.edu	37	16	87921865	87921865	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001739.1	-1	reviewed	p.R263H	0.998	121	0%	195	47.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Carb_anhydrase,superfamily_Carbonic anhydrase
ZNF469	84627	genome.wustl.edu	37	16	88496473	88496473	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001127464.1	+1	reviewed	p.I865	0.717	5	0.000	9	0.889	1	0%	-	-	-	NULL
ZNF469	84627	genome.wustl.edu	37	16	88502143	88502143	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001127464.1	+1	reviewed	p.F2727L	0.001	127	0%	160	13.8%	1	0%	benign(0)	deleterious(0)	neutral(0.445)	NULL
ZNF469	84627	genome.wustl.edu	37	16	88504685	88504685	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001127464.1	+1	reviewed	p.R3575W	0.002	13	0%	13	46.2%	0	-	probably_damaging(0.982)	-	-	NULL
C16orf85	400555	genome.wustl.edu	37	16	88620465	88620465	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000378416	-1	known	p.S55	0.094	44	0%	55	32.7%	0	-	-	-	-	NULL
CTU2	348180	genome.wustl.edu	37	16	88778732	88778732	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001012759.1	+1	validated	p.E132K	0.333	110	0%	135	40.7%	20	35%	benign(0.025)	tolerated(0.24)	neutral(0.038)	superfamily_Adenine nucleotide alpha hydrolases-like
TRAPPC2L	51693	genome.wustl.edu	37	16	88925066	88925066	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016209.3	+1	validated	p.E25K	0.996	83	0%	108	38.9%	245	37.5%	benign(0.002)	tolerated(0.4)	neutral(0.016)	HMMPfam_Sedlin_N,superfamily_SNARE-like
ANKRD11	29123	genome.wustl.edu	37	16	89345787	89345787	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_013275.4	-1	validated	p.R2388H	0.941	25	0%	47	51.1%	41	53.6%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SPG7	6687	genome.wustl.edu	37	16	89598439	89598439	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003119.2	+1	reviewed	p.A372V	1.000	85	1.2%	151	47%	50	40%	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	HMMSmart_SM00382,HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases
CPNE7	27132	genome.wustl.edu	37	16	89661817	89661817	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014427.4	+1	reviewed	p.D524N	0.996	7	0.000	15	0.333	2	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00327,HMMPfam_Copine,superfamily_vWA-like
CDK10	8558	genome.wustl.edu	37	16	89758285	89758285	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_052988.4	+1	reviewed	p.S136L	0.997	139	0.7%	163	49.1%	67	35.8%	benign(0.004)	tolerated(0.97)	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
C16orf7	9605	genome.wustl.edu	37	16	89774353	89774353	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004913.2	-1	validated	p.I604	0.839	21	0%	20	50%	32	28.1%	-	-	-	HMMPfam_VPS9,superfamily_SSF109993
TCF25	22980	genome.wustl.edu	37	16	89970564	89970564	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014972.2	+1	validated	p.D474N	0.942	76	0%	106	38.7%	84	42.8%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_DUF654
GLOD4	51031	genome.wustl.edu	37	17	679019	679019	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016080.3	-1	validated	p.Q134	0.042	124	0%	132	47%	20	50%	-	-	-	HMMPfam_Glyoxalase
CRK	1398	genome.wustl.edu	37	17	1340345	1340345	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016823.2	-1	reviewed	p.E116*	1.000	220	0%	217	45.2%	20	25%	-	-	-	superfamily_SH3-domain,superfamily_SH2 domain
PITPNA	5306	genome.wustl.edu	37	17	1438503	1438503	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006224.3	-1	reviewed	p.Q206	1.000	200	0%	241	51%	48	37.5%	-	-	-	HMMPfam_IP_trans,superfamily_SSF55961
SCARF1	8578	genome.wustl.edu	37	17	1538441	1538441	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003693.2	-1	reviewed	p.E702K	0.998	15	0%	15	40%	5	0%	benign(0.287)	deleterious(0)	deleterious(0.533)	NULL
PRPF8	10594	genome.wustl.edu	37	17	1554107	1554107	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006445.3	-1	reviewed	p.L2333	1.000	55	0%	91	41.8%	491	44.6%	-	-	-	HMMPfam_PROCT
PRPF8	10594	genome.wustl.edu	37	17	1578988	1578988	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006445.3	-1	reviewed	p.R933H	1.000	133	0%	153	20.3%	119	24.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PRPF8	10594	genome.wustl.edu	37	17	1581888	1581888	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006445.3	-1	reviewed	p.R593Q	1.000	105	0%	124	33.9%	132	43.9%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_PROCN
SERPINF2	5345	genome.wustl.edu	37	17	1657778	1657778	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000934.3	+1	reviewed	p.L476F	0.609	50	0%	68	51.5%	0	-	benign(0.046)	deleterious(0)	neutral(0.447)	NULL
RPA1	6117	genome.wustl.edu	37	17	1783902	1783902	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002945.3	+1	validated	p.F386	1.000	197	0%	204	40.2%	32	37.5%	-	-	-	superfamily_Nucleic acid-binding proteins
DPH1	1801	genome.wustl.edu	37	17	1943538	1943538	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001383.3	+1	validated	p.S264F	1.000	97	0%	92	41.3%	56	50%	benign(0.012)	tolerated(0.07)	neutral(0.320)	HMMPfam_Diphthamide_syn
KIAA0664	23277	genome.wustl.edu	37	17	2597527	2597527	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015229.3	-1	validated	p.A955V	0.984	90	1.1%	107	38.3%	196	37.2%	benign(0)	tolerated(0.42)	neutral(0.014)	NULL
OR1A1	8383	genome.wustl.edu	37	17	3119577	3119577	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014565.2	+1	validated	p.F221	0.035	236	0%	307	45%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
SPATA22	84690	genome.wustl.edu	37	17	3343629	3343629	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032598.4	-1	validated	p.R302C	1.000	39	0%	59	39%	0	-	unknown(0)	-	-	NULL
ITGAE	3682	genome.wustl.edu	37	17	3618155	3618155	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002208.4	-1	reviewed	p.E1176K	0.000	400	0%	418	40.4%	15	33.3%	benign(0.026)	tolerated(0.49)	neutral(0.011)	NULL
ITGAE	3682	genome.wustl.edu	37	17	3631413	3631413	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002208.4	-1	reviewed	p.E988*	1.000	215	0%	281	47.3%	3	0%	-	-	-	HMMPfam_Integrin_alpha2
C17orf85	55421	genome.wustl.edu	37	17	3721585	3721585	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001114118.1	-1	provisional	p.E428K	1.000	118	1.7%	115	41.7%	11	27.2%	benign(0.076)	deleterious(0)	neutral(0.450)	NULL
CAMKK1	84254	genome.wustl.edu	37	17	3789001	3789001	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000381769	-1	known	p.R21K	0.000	28	0%	37	35.1%	0	-	unknown(0)	-	-	NULL
P2RX1	5023	genome.wustl.edu	37	17	3807303	3807303	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002558.2	-1	reviewed	p.K148T	1.000	61	0%	84	35.7%	0	-	benign(0.032)	deleterious(0.02)	neutral(0.385)	HMMPfam_P2X_receptor
ZZEF1	23140	genome.wustl.edu	37	17	3919619	3919619	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015113.3	-1	validated	p.E2715K	1.000	237	0%	281	23.8%	28	25%	probably_damaging(0.999)	tolerated(0.19)	deleterious(0.540)	superfamily_Spermadhesin CUB domain
ZZEF1	23140	genome.wustl.edu	37	17	3970468	3970468	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015113.3	-1	validated	p.R1382*	1.000	242	0%	289	47.8%	1	100%	-	-	-	NULL
SPNS3	201305	genome.wustl.edu	37	17	4389746	4389746	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_182538.4	+1	validated	p.L440M	1.000	29	0%	36	36.1%	1	0%	possibly_damaging(0.78)	tolerated(0.09)	deleterious(0.588)	superfamily_MFS general substrate transporter
PELP1	27043	genome.wustl.edu	37	17	4579050	4579050	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000301396	-1	known	p.D370	0.000	114	0%	118	16.1%	1	0%	-	-	-	NULL
CXCL16	58191	genome.wustl.edu	37	17	4642167	4642167	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001100812.1	-1	validated	p.R62I	0.000	41	0%	48	43.8%	47	34%	benign(0.001)	tolerated(0.24)	neutral(0.037)	NULL
TM4SF5	9032	genome.wustl.edu	37	17	4685923	4685923	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003963.2	+1	reviewed	p.F128	0.897	51	0%	76	47.4%	0	-	-	-	-	HMMPfam_L6_membrane
PLD2	5338	genome.wustl.edu	37	17	4711611	4711611	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002663.3	+1	validated	p.D95N	0.599	103	0%	135	29.6%	7	28.5%	benign(0)	tolerated(0.27)	neutral(0.034)	HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain
MINK1	50488	genome.wustl.edu	37	17	4789239	4789239	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_153827.4	+1	reviewed	p.E225K	1.000	180	0%	236	47.9%	36	19.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
MINK1	50488	genome.wustl.edu	37	17	4798501	4798501	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_153827.4	+1	reviewed	p.R1017*	1.000	66	0%	90	50%	37	5.4%	-	-	-	HMMSmart_SM00036
ENO3	2027	genome.wustl.edu	37	17	4856566	4856566	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001976.3	+1	reviewed	e4-1	1.000	296	0%	427	44.7%	1	0%	-	-	-	-
RABEP1	9135	genome.wustl.edu	37	17	5212066	5212066	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004703.4	+1	validated	p.E38*	1.000	158	0%	191	37.2%	2	0%	-	-	-	NULL
RPAIN	84268	genome.wustl.edu	37	17	5324773	5324773	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001033002.3	+1	validated	p.E80G	0.360	187	0%	257	44%	86	43%	benign(0.003)	tolerated(0.18)	neutral(0.056)	NULL
C1QBP	708	genome.wustl.edu	37	17	5341484	5341484	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001212.3	-1	reviewed	p.N114	0.878	403	0%	432	41.9%	46	54.3%	-	-	-	HMMPfam_MAM33,superfamily_MAM33
NLRP1	22861	genome.wustl.edu	37	17	5421189	5421189	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033004.3	-1	reviewed	p.R1312*	0.022	153	0%	209	43.5%	0	-	-	-	-	NULL
NLRP1	22861	genome.wustl.edu	37	17	5436163	5436163	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033004.3	-1	reviewed	p.D1092G	0.025	85	0%	93	45.2%	0	-	probably_damaging(0.954)	deleterious(0.02)	deleterious(0.780)	NULL
AIPL1	23746	genome.wustl.edu	37	17	6329069	6329069	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014336.3	-1	reviewed	p.K289T	0.994	35	0%	64	46.9%	1	100%	probably_damaging(0.986)	deleterious(0.01)	deleterious(0.840)	superfamily_SSF48452
ALOX12	239	genome.wustl.edu	37	17	6913595	6913595	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000697.2	+1	validated	p.F615L	1.000	120	0%	127	37.8%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Lipoxygenase,superfamily_Lipoxygenase
BCL6B	255877	genome.wustl.edu	37	17	6927842	6927842	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_181844.3	+1	validated	p.R175Q	1.000	105	0%	121	44.6%	0	-	probably_damaging(0.969)	tolerated(0.6)	neutral(0.416)	NULL
DLG4	1742	genome.wustl.edu	37	17	7107371	7107371	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001365.3	-1	reviewed	p.G99R	1.000	306	0.3%	358	45.3%	4	25%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_PDZ,HMMPfam_MAGUK_N_PEST
ACADVL	37	genome.wustl.edu	37	17	7124143	7124143	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000018.2	+1	reviewed	p.F112L	1.000	224	0%	245	24.5%	152	22.3%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Acyl-CoA_dh_N,superfamily_Acyl-CoA dehydrogenase NM domain-like
SLC2A4	6517	genome.wustl.edu	37	17	7186902	7186902	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001042.2	+1	reviewed	p.I87	1.000	174	0.6%	250	47.6%	0	-	-	-	-	HMMPfam_Sugar_tr,superfamily_MFS_gen_substrate_transporter
EIF5A	1984	genome.wustl.edu	37	17	7214735	7214735	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001143760.1	+1	validated	p.R143C	1.000	242	0%	341	46.9%	1578	41%	benign(0.028)	deleterious(0.02)	neutral(0.385)	superfamily_Nucleic_acid_OB,HMMPfam_eIF-5a
GPS2	2874	genome.wustl.edu	37	17	7217723	7217723	+	Splice_Site	SNP	C	C	T	rs112452916	byCluster	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004489.4	-1	reviewed	e3-1	1.000	341	0%	449	20%	0	-	-	-	-	-
NEURL4	84461	genome.wustl.edu	37	17	7229858	7229858	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032442.2	-1	validated	p.D368N	1.000	152	0%	201	41.8%	12	41.6%	probably_damaging(0.965)	deleterious(0)	deleterious(0.851)	HMMPfam_Neuralized,HMMSmart_SM00588
POLR2A	5430	genome.wustl.edu	37	17	7401471	7401471	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000937.3	+1	validated	p.R426H	1.000	103	0%	160	45.6%	168	40.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RNA_pol_Rpb1_2,superfamily_SSF64484
POLR2A	5430	genome.wustl.edu	37	17	7406991	7406991	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000937.3	+1	validated	p.F1041V	1.000	137	0%	185	20.5%	186	36.5%	possibly_damaging(0.675)	deleterious(0)	deleterious(0.684)	HMMPfam_RNA_pol_Rpb1_6,HMMPfam_RNA_pol_Rpb1_5,superfamily_SSF64484
POLR2A	5430	genome.wustl.edu	37	17	7411775	7411775	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000937.3	+1	validated	p.R1149Q	0.998	67	0%	90	46.7%	119	40.3%	probably_damaging(0.986)	tolerated(0.35)	neutral(0.455)	HMMPfam_RNA_pol_Rpb1_5,superfamily_SSF64484
POLR2A	5430	genome.wustl.edu	37	17	7416821	7416821	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000937.3	+1	validated	p.P1746	0.999	1057	0.1%	1226	43.4%	454	47.1%	-	-	-	HMMPfam_RNA_pol_Rpb1_R,PatternScan_RNA_POL_II_REPEAT
MPDU1	9526	genome.wustl.edu	37	17	7487229	7487229	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004870.3	+1	reviewed	p.L17I	1.000	92	0%	122	41.8%	26	69.2%	benign(0.34)	tolerated(0.1)	neutral(0.394)	NULL
TP53	7157	genome.wustl.edu	37	17	7579883	7579883	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000546.4	-1	reviewed	p.V10	0.023	44	0%	64	39.1%	62	29%	-	-	-	HMMPfam_P53_TAD
DNAH2	146754	genome.wustl.edu	37	17	7673645	7673645	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020877.2	+1	validated	p.I1339	0.928	188	0%	239	41.4%	0	-	-	-	-	HMMPfam_DHC_N2
DNAH2	146754	genome.wustl.edu	37	17	7674695	7674695	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020877.2	+1	validated	p.S1470	0.214	135	0%	181	43.6%	0	-	-	-	-	HMMPfam_DHC_N2
DNAH2	146754	genome.wustl.edu	37	17	7720910	7720910	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020877.2	+1	validated	p.S3351Y	0.827	125	0%	129	38.8%	0	-	benign(0.045)	deleterious(0.03)	neutral(0.367)	NULL
CHD3	1107	genome.wustl.edu	37	17	7805993	7805993	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001005271.2	+1	reviewed	p.I1165	0.381	284	0.4%	389	48.6%	100	48%	-	-	-	HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_P-loop containing nucleoside triphosphate hydrolases
CHD3	1107	genome.wustl.edu	37	17	7806817	7806817	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001005271.2	+1	reviewed	p.N1300	0.338	20	0%	38	34.2%	192	45.8%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
CNTROB	116840	genome.wustl.edu	37	17	7847559	7847559	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000380262	+1	known	p.E522K	1.000	40	0%	56	10.7%	83	3.6%	possibly_damaging(0.945)	tolerated(0.08)	deleterious(0.690)	NULL
ALOX15B	247	genome.wustl.edu	37	17	7948600	7948600	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001141.2	+1	reviewed	p.I298	0.214	79	0%	101	45.5%	0	-	-	-	-	HMMPfam_Lipoxygenase,superfamily_Lipoxigenase
ALOXE3	59344	genome.wustl.edu	37	17	8015414	8015414	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021628.2	-1	reviewed	p.T261P	0.252	109	0%	179	39.1%	0	-	benign(0)	deleterious(0.01)	neutral(0.406)	superfamily_Lipoxygenase
ALOXE3	59344	genome.wustl.edu	37	17	8020153	8020153	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021628.2	-1	reviewed	p.H98R	0.032	88	0%	137	46.7%	0	-	benign(0.006)	tolerated(0.55)	neutral(0.007)	HMMPfam_PLAT,HMMSmart_LH2,superfamily_Lipase_LipOase
ALOXE3	59344	genome.wustl.edu	37	17	8020257	8020257	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021628.2	-1	reviewed	p.E63	0.989	39	0%	76	52.6%	0	-	-	-	-	HMMPfam_PLAT,HMMSmart_LH2,superfamily_Lipase_LipOase
PER1	5187	genome.wustl.edu	37	17	8045743	8045743	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002616.2	-1	reviewed	p.F1098S	0.999	45	0%	44	29.5%	8	62.5%	possibly_damaging(0.916)	deleterious(0)	deleterious(0.811)	NULL
TMEM107	84314	genome.wustl.edu	37	17	8077885	8077885	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032354.3	-1	validated	p.F108	0.966	171	0%	200	37%	11	9%	-	-	-	NULL
ARHGEF15	22899	genome.wustl.edu	37	17	8224303	8224303	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_173728.2	+1	reviewed	p.P840T	0.282	49	0%	56	48.2%	6	0%	benign(0.013)	tolerated(0.24)	neutral(0.038)	NULL
MYH10	4628	genome.wustl.edu	37	17	8526265	8526265	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005964.1	-1	validated	p.S100	0.997	249	0%	295	42.4%	10	40%	-	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
CCDC42	146849	genome.wustl.edu	37	17	8644938	8644938	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_144681.2	-1	validated	p.E116*	0.968	218	0%	322	37.3%	0	-	-	-	-	NULL
PIK3R5	23533	genome.wustl.edu	37	17	8790869	8790869	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001142633.1	-1	validated	p.P583L	0.001	51	0%	68	25%	1	0%	benign(0.001)	tolerated(0.14)	neutral(0.249)	HMMPfam_PI3K_1B_p101
PIK3R5	23533	genome.wustl.edu	37	17	8792177	8792177	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001142633.1	-1	validated	p.Q309H	0.999	65	0%	97	40.2%	1	0%	possibly_damaging(0.671)	tolerated(0.11)	deleterious(0.510)	HMMPfam_PI3K_1B_p101
GLP2R	9340	genome.wustl.edu	37	17	9783787	9783787	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004246.1	+1	reviewed	p.A413V	0.003	290	0%	323	45.8%	0	-	benign(0.001)	tolerated(0.32)	neutral(0.024)	HMMPfam_7tm_2
MYH13	8735	genome.wustl.edu	37	17	10209948	10209948	+	Splice_Site	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003802.2	-1	validated	e35-2	1.000	182	0%	235	12.3%	0	-	-	-	-	-
MYH13	8735	genome.wustl.edu	37	17	10250059	10250059	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003802.2	-1	validated	p.L401	0.991	243	0%	296	42.9%	0	-	-	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYH13	8735	genome.wustl.edu	37	17	10253952	10253952	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003802.2	-1	validated	p.T355	0.411	178	0%	264	50%	0	-	-	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYH8	4626	genome.wustl.edu	37	17	10317342	10317342	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002472.2	-1	reviewed	p.L342M	1.000	231	0%	322	42.9%	0	-	probably_damaging(0.997)	tolerated(0.21)	deleterious(0.510)	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
MYH4	4622	genome.wustl.edu	37	17	10348360	10348360	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017533.2	-1	validated	p.R1800H	1.000	310	0%	373	44.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Myosin_tail_1
MYH4	4622	genome.wustl.edu	37	17	10351746	10351746	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017533.2	-1	validated	p.K1541N	1.000	318	0%	404	17.1%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Myosin_tail_1
MYH1	4619	genome.wustl.edu	37	17	10398578	10398578	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005963.3	-1	reviewed	p.Q1742	1.000	741	0%	919	47.4%	0	-	-	-	-	HMMPfam_Myosin_tail_1
MYH1	4619	genome.wustl.edu	37	17	10411921	10411921	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005963.3	-1	reviewed	p.K552N	1.000	383	0%	550	42%	0	-	probably_damaging(0.998)	tolerated(0.11)	deleterious(0.746)	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
SHISA6	388336	genome.wustl.edu	37	17	11145336	11145336	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_207386.3	+1	validated	p.Y199	0.933	4	0.000	20	0.400	2	0%	-	-	-	NULL
DNAH9	1770	genome.wustl.edu	37	17	11572544	11572544	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001372.3	+1	reviewed	p.R965	0.860	116	0%	128	39.8%	1	100%	-	-	-	NULL
DNAH9	1770	genome.wustl.edu	37	17	11593270	11593270	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001372.3	+1	reviewed	p.Q1377H	1.000	21	0%	17	29.4%	1	0%	benign(0.029)	tolerated(0.1)	neutral(0.288)	HMMPfam_DHC_N2
HS3ST3A1	9955	genome.wustl.edu	37	17	13399761	13399761	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006042.1	-1	reviewed	p.R325H	1.000	131	0%	157	21%	2	50%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases
ZNF286A	57335	genome.wustl.edu	37	17	15619755	15619755	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001130842.1	+1	validated	p.E239D	1.000	125	0.8%	153	79.7%	0	-	benign(0.001)	tolerated(0.56)	neutral(0.006)	superfamily_SSF57667
TBC1D26	353149	genome.wustl.edu	37	17	15642057	15642057	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_178571.4	+1	validated	p.R137M	0.000	492	0.2%	544	30%	0	-	probably_damaging(0.977)	deleterious(0.04)	deleterious(0.768)	HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p
ZNF287	57336	genome.wustl.edu	37	17	16455780	16455780	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020653.2	-1	validated	p.S559F	1.000	238	0%	262	46.2%	1	100%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_C2H2 and C2HC zinc fingers
ZNF287	57336	genome.wustl.edu	37	17	16455886	16455886	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020653.2	-1	validated	p.L524I	0.259	252	0%	325	47.7%	0	-	possibly_damaging(0.533)	tolerated(1)	neutral(0.180)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF624	57547	genome.wustl.edu	37	17	16525619	16525619	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020787.2	-1	validated	p.E861*	1.000	280	0%	381	40.4%	1	0%	-	-	-	superfamily_C2H2 and C2HC zinc fingers
CCDC144A	9720	genome.wustl.edu	37	17	16612872	16612872	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014695.1	+1	provisional	p.K501Q	0.997	430	0%	537	37.6%	0	-	possibly_damaging(0.931)	deleterious(0)	deleterious(0.822)	NULL
MYO15A	51168	genome.wustl.edu	37	17	18023361	18023361	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016239.3	+1	reviewed	p.P416L	0.170	31	0%	49	38.8%	0	-	probably_damaging(0.997)	-	-	NULL
MYO15A	51168	genome.wustl.edu	37	17	18061076	18061076	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016239.3	+1	reviewed	p.F2943L	1.000	23	0%	43	46.5%	0	-	probably_damaging(0.994)	-	-	HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_SH3_2
SMCR8	140775	genome.wustl.edu	37	17	18219626	18219626	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_144775.2	+1	validated	p.E175K	0.976	85	0%	97	48.5%	1	100%	benign(0.242)	tolerated(0.24)	neutral(0.062)	NULL
SMCR8	140775	genome.wustl.edu	37	17	18221238	18221238	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_144775.2	+1	validated	p.K712T	0.980	49	0%	78	33.3%	18	55.5%	benign(0.344)	deleterious(0.03)	deleterious(0.473)	NULL
LGALS9C	654346	genome.wustl.edu	37	17	18390984	18390984	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001040078.2	+1	validated	p.F119	0.011	186	0%	252	28.6%	12	0%	-	-	-	HMMPfam_Gal-bind_lectin,HMMSmart_SM00276,superfamily_Concanavalin A-like lectins/glucanases
ENSG00000154874	0	genome.wustl.edu	37	17	18455030	18455030	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000285176	-1	known	NULL	0.008	121	0%	130	93.1%	0	-	-	-	-	-
TBC1D28	254272	genome.wustl.edu	37	17	18541185	18541185	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001039397.2	-1	validated	p.F163	0.007	351	0%	481	46.6%	0	-	-	-	-	superfamily_RabGAP_TBC
ZNF286B	729288	genome.wustl.edu	37	17	18565946	18565946	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001145045.1	-1	validated	p.Q291H	1.000	141	0%	201	47.3%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF286B	729288	genome.wustl.edu	37	17	18584073	18584073	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001145045.1	-1	validated	p.R36H	0.947	176	0%	246	46.7%	0	-	-	-	-	NULL
FBXW10	10517	genome.wustl.edu	37	17	18673282	18673282	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_031456.3	+1	validated	p.S630	0.987	281	0%	371	48.5%	0	-	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
PRPSAP2	5636	genome.wustl.edu	37	17	18814424	18814424	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002767.2	+1	reviewed	p.S198Y	1.000	90	0%	108	35.2%	30	40%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_SSF53271
MAPK7	5598	genome.wustl.edu	37	17	19284286	19284286	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002749.3	+1	reviewed	p.M255R	1.000	43	0%	56	37.5%	14	42.8%	unknown(0)	deleterious(0)	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
MAPK7	5598	genome.wustl.edu	37	17	19285511	19285511	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002749.3	+1	reviewed	p.A632V	0.000	11	0%	17	41.2%	16	31.2%	unknown(0)	tolerated(1)	-	NULL
RNF112	7732	genome.wustl.edu	37	17	19319144	19319144	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007148.4	+1	reviewed	p.D519Y	0.012	22	0%	21	47.6%	0	-	-	-	-	NULL
CCDC144C	348254	genome.wustl.edu	37	17	20224652	20224652	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000425519	+1	known	p.K8T	0.034	70	0%	78	37.2%	0	-	unknown(0)	deleterious(0)	-	NULL
CCDC144C	348254	genome.wustl.edu	37	17	20295809	20295809	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000425519	+1	known	p.D1077N	0.273	85	0%	81	45.7%	0	-	probably_damaging(0.996)	tolerated(0.22)	deleterious(0.504)	NULL
USP22	23326	genome.wustl.edu	37	17	20907564	20907564	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015276.1	-1	validated	p.D496N	1.000	141	0.7%	172	48.3%	253	37.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_UCH,superfamily_Cysteine proteinases
C17orf51	339263	genome.wustl.edu	37	17	21454638	21454638	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001113434.3	-1	validated	p.D16	0.000	22	0%	31	19.4%	1	0%	-	-	-	NULL
NOS2	4843	genome.wustl.edu	37	17	26087066	26087066	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000625.4	-1	reviewed	p.G1050D	1.000	49	0%	47	19.1%	1	0%	benign(0.137)	tolerated(0.44)	neutral(0.024)	HMMPfam_NAD_binding_1,superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain
TMEM97	27346	genome.wustl.edu	37	17	26653578	26653578	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014573.2	+1	validated	p.R97Q	1.000	139	0%	172	41.9%	14	28.5%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
POLDIP2	26073	genome.wustl.edu	37	17	26677487	26677487	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015584.3	-1	reviewed	p.R296*	1.000	108	0%	161	16.1%	286	1.3%	-	-	-	HMMPfam_DUF525,superfamily_ApaG-like (Pfam 04379)
UNC119	9094	genome.wustl.edu	37	17	26875664	26875664	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005148.3	-1	reviewed	p.R94W	0.997	130	0%	180	37.2%	13	38.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_GMP_PDE_delta,superfamily_E set domains
SPAG5	10615	genome.wustl.edu	37	17	26919171	26919171	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006461.3	-1	reviewed	p.S364F	0.010	306	0%	358	41.3%	26	38.4%	probably_damaging(0.979)	deleterious(0.02)	deleterious(0.805)	NULL
NEK8	284086	genome.wustl.edu	37	17	27067964	27067964	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_178170.2	+1	reviewed	p.S565G	0.980	59	0%	98	40.8%	6	66.6%	benign(0.15)	tolerated(0.42)	neutral(0.027)	superfamily_RCC1/BLIP-II
FLOT2	2319	genome.wustl.edu	37	17	27209178	27209178	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004475.2	-1	reviewed	p.F219	0.993	70	0%	89	46.1%	176	46%	-	-	-	HMMSmart_PHB
SEZ6	124925	genome.wustl.edu	37	17	27284209	27284209	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_178860.4	-1	validated	p.R849Q	0.910	44	0%	53	50.9%	0	-	benign(0)	tolerated(1)	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
MYO18A	399687	genome.wustl.edu	37	17	27414127	27414127	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_078471.3	-1	validated	p.R1847C	1.000	62	0%	93	16.1%	14	21.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Prefoldin
SSH2	85464	genome.wustl.edu	37	17	27959880	27959880	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033389.2	-1	reviewed	p.E751*	1.000	154	0%	184	42.4%	8	37.5%	-	-	-	NULL
SSH2	85464	genome.wustl.edu	37	17	28011595	28011595	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033389.2	-1	reviewed	p.F128L	1.000	254	0%	239	45.2%	26	46.1%	possibly_damaging(0.559)	deleterious(0.02)	deleterious(0.574)	NULL
EFCAB5	374786	genome.wustl.edu	37	17	28296127	28296127	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_198529.3	+1	validated	p.N170T	0.992	69	0%	100	46%	0	-	benign(0.001)	tolerated(0.92)	-	NULL
EFCAB5	374786	genome.wustl.edu	37	17	28320295	28320295	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_198529.3	+1	validated	p.D294N	0.018	253	0%	256	42.6%	0	-	benign(0.039)	tolerated(0.35)	neutral(0.022)	superfamily_EF-hand
TMIGD1	388364	genome.wustl.edu	37	17	28656384	28656384	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_206832.1	-1	provisional	p.I82	1.000	215	0.5%	271	39.9%	0	-	-	-	-	HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
CPD	1362	genome.wustl.edu	37	17	28748801	28748801	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001304.3	+1	reviewed	p.F419L	1.000	277	0%	277	41.5%	23	43.4%	possibly_damaging(0.564)	deleterious(0.01)	deleterious(0.598)	HMMSmart_Zn_pept,superfamily_CarboxypepD_reg
GOSR1	9527	genome.wustl.edu	37	17	28846976	28846976	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004871.2	+1	reviewed	p.E189*	1.000	255	0%	360	42.2%	10	10%	-	-	-	HMMPfam_V-SNARE
ATAD5	79915	genome.wustl.edu	37	17	29161340	29161340	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024857.3	+1	provisional	p.E81*	0.000	151	0%	191	47.6%	2	50%	-	-	-	NULL
TEFM	79736	genome.wustl.edu	37	17	29227445	29227445	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024683.3	-1	validated	p.V211I	0.002	116	0%	168	24.4%	2	50%	benign(0)	tolerated(0.62)	neutral(0.004)	superfamily_Ribonuclease H-like
NF1	4763	genome.wustl.edu	37	17	29486040	29486040	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001042492.2	+1	reviewed	p.E73*	1.000	195	0%	271	42.4%	1	100%	-	-	-	NULL
NF1	4763	genome.wustl.edu	37	17	29548954	29548954	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001128147.2	+1	reviewed	p.M576I	0.000	292	0%	247	36%	0	-	benign(0)	tolerated(0.36)	neutral(0.020)	NULL
NF1	4763	genome.wustl.edu	37	17	29654757	29654757	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001042492.2	+1	reviewed	p.D1837N	1.000	178	0%	267	14.6%	19	15.7%	benign(0.081)	tolerated(0.14)	neutral(0.256)	NULL
NF1	4763	genome.wustl.edu	37	17	29657330	29657330	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001042492.2	+1	reviewed	p.L1876I	1.000	285	0%	325	42.2%	1	100%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	NULL
RAB11FIP4	84440	genome.wustl.edu	37	17	29858736	29858736	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032932.3	+1	validated	p.E634K	1.000	182	0%	239	13%	165	26.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RBD-FIP
C17orf79	55352	genome.wustl.edu	37	17	30179933	30179933	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018405.3	-1	validated	p.E95K	1.000	165	0%	243	46.1%	55	41.8%	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	NULL
UTP6	55813	genome.wustl.edu	37	17	30200437	30200437	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018428.2	-1	validated	p.R486*	1.000	153	0%	198	46.5%	6	0%	-	-	-	HMMSmart_HAT,superfamily_SSF48452
UTP6	55813	genome.wustl.edu	37	17	30207638	30207638	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018428.2	-1	validated	p.E307	1.000	178	0.6%	229	52.8%	39	71.7%	-	-	-	HMMSmart_HAT,superfamily_SSF48452
RHBDL3	162494	genome.wustl.edu	37	17	30594934	30594934	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_138328.2	+1	validated	p.L42Q	1.000	256	0%	374	43.3%	2	100%	benign(0.076)	deleterious(0)	neutral(0.450)	superfamily_SSF47473
PSMD11	5717	genome.wustl.edu	37	17	30807637	30807637	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000457654	+1	known	p.E157*	1.000	99	0%	108	46.3%	21	61.9%	benign(0.212)	tolerated(0.24)	neutral(0.058)	NULL
CDK5R1	8851	genome.wustl.edu	37	17	30815532	30815532	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003885.2	+1	reviewed	p.K298N	1.000	62	0%	90	42.2%	2	50%	benign(0.059)	tolerated(0.46)	neutral(0.016)	NULL
TMEM98	26022	genome.wustl.edu	37	17	31260261	31260261	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001033504.1	+1	validated	p.V67	0.999	191	0%	271	47.6%	97	16.4%	-	-	-	NULL
ENSG00000226049	0	genome.wustl.edu	37	17	32365738	32365738	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000430493	-1	known	p.E327D	1.000	189	0%	280	41.8%	1	0%	-	-	-	NULL
ENSG00000226049	0	genome.wustl.edu	37	17	32366710	32366710	+	Missense_Mutation	SNP	C	C	T	rs189847872	by1000genomes	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000430493	-1	known	p.R60Q	0.997	227	0%	259	47.9%	0	-	-	-	-	NULL
TMEM132E	124842	genome.wustl.edu	37	17	32959785	32959785	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_207313.1	+1	provisional	p.A425	1.000	92	0%	145	44.8%	1	0%	-	-	-	NULL
CCT6B	10693	genome.wustl.edu	37	17	33257980	33257980	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006584.2	-1	reviewed	p.D480Y	0.986	329	0%	416	37.7%	3	33.3%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like
LIG3	3980	genome.wustl.edu	37	17	33316505	33316505	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_013975.2	+1	reviewed	p.E238K	0.001	96	0%	94	41.5%	6	16.6%	benign(0.005)	tolerated(0.89)	-	NULL
SLFN5	162394	genome.wustl.edu	37	17	33592485	33592485	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_144975.3	+1	validated	p.Q752K	0.000	226	0%	304	26%	10	30%	benign(0.311)	tolerated(0.08)	neutral(0.397)	superfamily_P-loop containing nucleoside triphosphate hydrolases
SLFN11	91607	genome.wustl.edu	37	17	33679773	33679773	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001104587.1	-1	validated	p.S770P	0.453	125	0%	102	43.1%	2	0%	benign(0.005)	tolerated(0.26)	neutral(0.034)	superfamily_P-loop containing nucleoside triphosphate hydrolases
SLFN11	91607	genome.wustl.edu	37	17	33690380	33690380	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001104587.1	-1	validated	p.F149	0.001	152	0%	190	42.1%	0	-	-	-	-	NULL
PEX12	5193	genome.wustl.edu	37	17	33904276	33904276	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000286.2	-1	reviewed	p.R154Q	1.000	131	0%	158	30.4%	2	0%	benign(0.016)	tolerated(0.39)	neutral(0.017)	HMMPfam_Pex2_Pex12
PEX12	5193	genome.wustl.edu	37	17	33904322	33904322	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000286.2	-1	reviewed	p.E139*	1.000	93	0%	113	47.8%	1	100%	-	-	-	HMMPfam_Pex2_Pex12
MMP28	79148	genome.wustl.edu	37	17	34093521	34093521	+	Nonstop_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000338839	-1	known	p.*520R	1.000	37	0%	28	17.9%	0	-	-	-	-	NULL
CCL4	6351	genome.wustl.edu	37	17	34432007	34432007	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002984.2	+1	validated	p.S55G	1.000	166	0%	194	37.6%	5	0%	possibly_damaging(0.465)	deleterious(0)	deleterious(0.598)	PatternScan_SMALL_CYTOKINES_CC,HMMPfam_IL8,HMMSmart_SCY,superfamily_Chemokine_IL8
PIGW	284098	genome.wustl.edu	37	17	34893597	34893597	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_178517.3	+1	validated	p.R216Q	0.993	323	0%	408	43.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LHX1	3975	genome.wustl.edu	37	17	35300087	35300087	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005568.2	+1	reviewed	p.D294N	1.000	20	0%	26	42.3%	0	-	possibly_damaging(0.719)	deleterious(0.01)	deleterious(0.666)	NULL
DDX52	11056	genome.wustl.edu	37	17	35992283	35992283	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007010.2	-1	validated	p.D155N	1.000	330	0%	414	49%	6	16.6%	benign(0.003)	tolerated(0.34)	neutral(0.023)	superfamily_P-loop containing nucleoside triphosphate hydrolases
GPR179	440435	genome.wustl.edu	37	17	36483074	36483074	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001004334.2	-1	validated	p.K2126	0.278	124	0%	151	49%	0	-	-	-	-	NULL
GPR179	440435	genome.wustl.edu	37	17	36485944	36485944	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001004334.2	-1	validated	p.R1170W	0.247	325	0%	426	46.7%	0	-	possibly_damaging(0.95)	deleterious(0)	deleterious(0.838)	NULL
MLLT6	4302	genome.wustl.edu	37	17	36872948	36872948	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005937.3	+1	validated	p.A455	0.197	29	0%	38	39.5%	20	35%	-	-	-	NULL
FLJ43826	342666	genome.wustl.edu	37	17	37195758	37195758	+	RNA	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XR_040620.2	+1	model	NULL	0.994	235	0%	305	41.3%	0	-	-	-	-	-
MED1	5469	genome.wustl.edu	37	17	37565509	37565509	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004774.3	-1	reviewed	p.D989Y	1.000	279	0%	306	49.3%	5	60%	unknown(0)	deleterious(0)	-	NULL
MED1	5469	genome.wustl.edu	37	17	37587391	37587391	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004774.3	-1	reviewed	p.G209V	1.000	255	0%	322	42.5%	11	72.7%	unknown(0)	deleterious(0)	-	HMMPfam_Med1-Trap220
CDK12	51755	genome.wustl.edu	37	17	37673804	37673804	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016507.2	+1	validated	p.F986L	1.000	259	0%	337	43.6%	23	43.4%	unknown(0)	deleterious(0.05)	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
PGAP3	93210	genome.wustl.edu	37	17	37829371	37829371	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033419.3	-1	validated	p.F278V	1.000	53	0%	64	45.3%	129	49.6%	benign(0.389)	tolerated(0.13)	neutral(0.377)	HMMPfam_Per1
MED24	9862	genome.wustl.edu	37	17	38179522	38179522	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014815.3	-1	reviewed	p.K704	1.000	60	0%	74	50%	105	46.6%	-	-	-	NULL
CASC3	22794	genome.wustl.edu	37	17	38319103	38319103	+	Missense_Mutation	SNP	G	G	A	rs183006262	by1000genomes	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007359.4	+1	reviewed	p.R245H	1.000	116	0%	173	45.7%	17	23.5%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Btz
KRTAP3-3	85293	genome.wustl.edu	37	17	39150067	39150067	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033185.2	-1	reviewed	p.P95S	0.979	158	0%	244	14.8%	0	-	probably_damaging(0.99)	tolerated(0.1)	deleterious(0.728)	HMMPfam_Keratin_matx
KRTAP4-9	100132386	genome.wustl.edu	37	17	39261976	39261976	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_002343553.1	+1	model	p.R106Q	0.041	59	0%	89	38.2%	0	-	-	-	-	NULL
KRT16	3868	genome.wustl.edu	37	17	39767176	39767176	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005557.3	-1	reviewed	p.R330H	0.069	81	0%	127	29.1%	81	50.6%	possibly_damaging(0.939)	deleterious(0.04)	deleterious(0.734)	HMMPfam_Filament
KRT16	3868	genome.wustl.edu	37	17	39767952	39767952	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005557.3	-1	reviewed	p.N185H	1.000	106	0%	149	24.8%	132	43.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Filament
KRT17	3872	genome.wustl.edu	37	17	39777096	39777096	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000422.2	-1	reviewed	p.E332D	1.000	49	0%	74	20.3%	1115	34.6%	possibly_damaging(0.515)	deleterious(0.04)	deleterious(0.522)	HMMPfam_Filament
LEPREL4	10609	genome.wustl.edu	37	17	39966013	39966013	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006455.2	-1	validated	p.F287	0.790	78	0%	103	49.5%	33	0%	-	-	-	NULL
ACLY	47	genome.wustl.edu	37	17	40025332	40025332	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001096.2	-1	reviewed	p.F1033C	1.000	194	0%	232	39.2%	216	51.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Citrate_synthase_core
RAB5C	5878	genome.wustl.edu	37	17	40280381	40280381	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004583.2	-1	validated	p.K113N	1.000	154	0.6%	188	13.8%	356	13.7%	probably_damaging(0.974)	deleterious(0)	deleterious(0.861)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
STAT3	6774	genome.wustl.edu	37	17	40481436	40481436	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_139276.2	-1	reviewed	p.N425D	1.000	231	0%	305	43.6%	74	35.1%	possibly_damaging(0.942)	deleterious(0.04)	deleterious(0.736)	superfamily_p53-like transcription factors,HMMPfam_STAT_bind
PSMC3IP	29893	genome.wustl.edu	37	17	40725568	40725568	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016556.2	-1	validated	p.C137	1.000	371	0%	589	47%	18	44.4%	-	-	-	HMMPfam_TBPIP
RAMP2	10266	genome.wustl.edu	37	17	40914461	40914461	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005854.2	+1	reviewed	p.C84	0.855	147	0%	251	38.6%	19	0%	-	-	-	HMMPfam_RAMP
WNK4	65266	genome.wustl.edu	37	17	40939380	40939380	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032387.4	+1	reviewed	p.R521C	1.000	72	0%	109	41.3%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Protein kinase-like (PK-like)
BRCA1	672	genome.wustl.edu	37	17	41244663	41244663	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007294.3	-1	reviewed	p.E962A	0.760	113	0%	159	44%	1	100%	probably_damaging(0.959)	deleterious(0)	deleterious(0.847)	NULL
BRCA1	672	genome.wustl.edu	37	17	41245720	41245720	+	Silent	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007294.3	-1	reviewed	p.R610	0.982	109	0%	116	50%	0	-	-	-	-	NULL
BRCA1	672	genome.wustl.edu	37	17	41245866	41245866	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007294.3	-1	reviewed	p.S561Y	0.025	191	0%	245	51.8%	0	-	benign(0.001)	tolerated(0.52)	neutral(0.009)	NULL
HDAC5	10014	genome.wustl.edu	37	17	42164978	42164978	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001015053.1	-1	reviewed	p.V563	0.931	68	0%	110	49.1%	17	17.6%	-	-	-	NULL
C17orf53	78995	genome.wustl.edu	37	17	42231999	42231999	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024032.3	+1	validated	p.M510V	0.042	101	0%	123	16.3%	5	20%	benign(0.004)	tolerated(0.42)	neutral(0.014)	NULL
ASB16	92591	genome.wustl.edu	37	17	42254991	42254991	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_080863.4	+1	reviewed	p.C359	1.000	125	0%	188	46.3%	23	47.8%	-	-	-	superfamily_Ankyrin repeat
GPATCH8	23131	genome.wustl.edu	37	17	42478686	42478686	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001002909.1	-1	validated	p.F253L	0.217	140	0%	147	21.1%	10	40%	unknown(0)	tolerated(1)	-	NULL
C17orf104	284071	genome.wustl.edu	37	17	42744313	42744313	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001145080.2	+1	validated	p.F345C	1.000	86	0%	105	43.8%	0	-	probably_damaging(0.994)	tolerated(0.18)	deleterious(0.508)	NULL
EFTUD2	9343	genome.wustl.edu	37	17	42942432	42942432	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004247.3	-1	validated	p.V384A	1.000	90	0%	119	47.9%	44	40.9%	benign(0.132)	tolerated(0.07)	neutral(0.330)	HMMPfam_GTP_EFTU,superfamily_SSF52540
C1QL1	10882	genome.wustl.edu	37	17	43044895	43044895	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006688.3	-1	provisional	p.Y174*	1.000	64	0%	96	34.4%	2	0%	-	-	-	HMMPfam_C1q,HMMSmart_C1Q,superfamily_TNF_like
MAP3K14	9020	genome.wustl.edu	37	17	43362317	43362317	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000344686	-1	known	e6-1	1.000	74	0%	75	46.7%	0	-	-	-	-	-
LRRC37A4P	55073	genome.wustl.edu	37	17	43591897	43591897	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000443126	-1	known	p.P29L	0.002	131	0%	135	23%	0	-	-	-	-	NULL
MAPT	4137	genome.wustl.edu	37	17	44060842	44060842	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001123066.3	+1	validated	p.V224	0.016	7	0.000	7	0.571	0	-	-	-	-	NULL
NSF	4905	genome.wustl.edu	37	17	44806274	44806274	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006178.2	+1	validated	p.V628I	1.000	372	0%	455	38.5%	11	27.2%	benign(0.136)	deleterious(0.02)	neutral(0.395)	HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
WNT3	7473	genome.wustl.edu	37	17	44895948	44895948	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_030753.3	-1	reviewed	p.L6F	1.000	11	0%	23	43.5%	0	-	unknown(0)	tolerated(0.28)	-	NULL
WNT9B	7484	genome.wustl.edu	37	17	44953726	44953726	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003396.1	+1	reviewed	p.K239R	1.000	22	0%	30	43.3%	0	-	probably_damaging(0.999)	tolerated(0.17)	deleterious(0.549)	HMMPfam_wnt,HMMSmart_SM00097
ENSG00000250104	0	genome.wustl.edu	37	17	45128752	45128752	+	RNA	SNP	T	T	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000508811	-1	novel	NULL	0.129	571	0.2%	632	34.2%	1	100%	-	-	-	-
ENSG00000228782	0	genome.wustl.edu	37	17	45560403	45560403	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000425159	-1	known	p.E138A	1.000	187	0%	205	19%	3	33.3%	-	-	-	HMMPfam_Tim44
NPEPPS	9520	genome.wustl.edu	37	17	45663554	45663554	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006310.3	+1	reviewed	p.N297S	1.000	253	0%	335	15.8%	32	31.2%	benign(0.002)	tolerated(0.4)	neutral(0.016)	HMMPfam_Peptidase_M1,superfamily_SSF55486
KPNB1	3837	genome.wustl.edu	37	17	45755448	45755448	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000290158	+1	known	p.L714M	1.000	401	0%	520	19.2%	79	24%	possibly_damaging(0.949)	deleterious(0.01)	deleterious(0.798)	superfamily_ARM repeat
TTLL6	284076	genome.wustl.edu	37	17	46874456	46874456	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001130918.1	-1	validated	p.T293	0.000	200	0%	237	13.9%	0	-	-	-	-	HMMPfam_TTL,superfamily_Glutathione synthetase ATP-binding domain-like
UBE2Z	65264	genome.wustl.edu	37	17	47000242	47000242	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_023079.3	+1	validated	p.Y279	0.982	171	0.6%	247	42.9%	34	41.1%	-	-	-	NULL
B4GALNT2	124872	genome.wustl.edu	37	17	47218678	47218678	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_153446.2	+1	validated	p.F88	0.000	192	0%	234	50.9%	0	-	-	-	-	NULL
ABI3	51225	genome.wustl.edu	37	17	47295199	47295199	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016428.2	+1	reviewed	p.E128D	0.281	141	0%	176	46%	11	0%	benign(0.019)	tolerated(0.08)	neutral(0.301)	HMMPfam_Abi_HHR
ITGA3	3675	genome.wustl.edu	37	17	48148265	48148265	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005501.2	+1	reviewed	p.D241G	0.997	238	0%	238	41.6%	54	48.1%	benign(0)	tolerated(0.61)	neutral(0.004)	superfamily_Integrin alpha N-terminal domain
COL1A1	1277	genome.wustl.edu	37	17	48272143	48272143	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000088.3	-1	reviewed	p.G467V	1.000	26	0%	37	32.4%	687	1%	unknown(0)	deleterious(0.04)	-	HMMPfam_Collagen
EPN3	55040	genome.wustl.edu	37	17	48618600	48618600	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017957.2	+1	validated	p.S420	0.003	289	0%	377	39%	13	53.8%	-	-	-	NULL
LUC7L3	51747	genome.wustl.edu	37	17	48821073	48821073	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006107.3	+1	reviewed	p.E145*	1.000	191	0%	223	21.5%	4	25%	-	-	-	HMMPfam_LUC7
NME1	4830	genome.wustl.edu	37	17	49237387	49237387	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_198175.1	+1	reviewed	p.R83H	1.000	106	0%	151	49.7%	484	44%	benign(0.383)	deleterious(0)	deleterious(0.567)	HMMPfam_NDK,HMMSmart_NDK,superfamily_NDK
TOM1L1	10040	genome.wustl.edu	37	17	53014508	53014508	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005486.2	+1	validated	p.L318	0.741	141	0%	180	47.8%	61	57.3%	-	-	-	NULL
ANKFN1	162282	genome.wustl.edu	37	17	54431197	54431197	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_153228.2	+1	validated	p.N134H	1.000	101	0%	154	42.9%	1	0%	possibly_damaging(0.678)	tolerated(0.15)	deleterious(0.482)	NULL
COIL	8161	genome.wustl.edu	37	17	55023818	55023818	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004645.2	-1	reviewed	p.L515I	1.000	312	0%	340	44.1%	4	25%	possibly_damaging(0.862)	tolerated(0.5)	neutral(0.343)	NULL
AKAP1	8165	genome.wustl.edu	37	17	55182829	55182829	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003488.3	+1	reviewed	p.A2T	1.000	64	0%	88	36.4%	13	69.2%	benign(0.1)	tolerated(0.14)	neutral(0.257)	NULL
LPO	4025	genome.wustl.edu	37	17	56327949	56327949	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006151.2	+1	reviewed	p.Y249*	0.971	55	0%	99	43.4%	0	-	-	-	-	HMMPfam_An_peroxidase,superfamily_Peroxidase_super
BZRAP1	9256	genome.wustl.edu	37	17	56388244	56388244	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004758.2	-1	validated	p.E1138*	0.066	16	0%	21	23.8%	1	0%	-	-	-	NULL
HSF5	124535	genome.wustl.edu	37	17	56557590	56557590	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001080439.1	-1	provisional	p.R197*	1.000	70	0%	76	21.1%	0	-	-	-	-	HMMPfam_HSF_DNA-bind
MTMR4	9110	genome.wustl.edu	37	17	56573340	56573340	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004687.4	-1	validated	p.E721D	0.971	233	0%	325	45.5%	8	50%	possibly_damaging(0.686)	tolerated(0.43)	neutral(0.259)	NULL
TEX14	56155	genome.wustl.edu	37	17	56649280	56649280	+	Splice_Site	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_198393.2	-1	reviewed	e24+2	0.998	78	0%	102	47.1%	0	-	-	-	-	-
TEX14	56155	genome.wustl.edu	37	17	56682438	56682438	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_198393.2	-1	reviewed	p.L413I	0.984	238	0%	310	43.2%	0	-	probably_damaging(0.973)	deleterious(0.01)	deleterious(0.821)	HMMPfam_Pkinase_Tyr,superfamily_Kinase_like
ENSG00000227324	0	genome.wustl.edu	37	17	56738876	56738876	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000453538	-1	known	p.E29K	0.998	63	0%	54	53.7%	0	-	-	-	-	HMMPfam_TAP42
RAD51C	5889	genome.wustl.edu	37	17	56780563	56780563	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_058216.1	+1	reviewed	p.R193Q	0.535	261	0%	308	42.5%	3	33.3%	benign(0.001)	tolerated(0.61)	neutral(0.004)	HMMSmart_AAA,HMMPfam_Rad51,superfamily_SSF52540
PPM1E	22843	genome.wustl.edu	37	17	57057779	57057779	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014906.3	+1	reviewed	p.R552I	1.000	93	0%	136	39%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
PPM1E	22843	genome.wustl.edu	37	17	57057860	57057860	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014906.3	+1	reviewed	p.K579T	1.000	130	0%	165	39.4%	0	-	benign(0.002)	deleterious(0)	neutral(0.445)	NULL
TRIM37	4591	genome.wustl.edu	37	17	57126732	57126732	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001005207.2	-1	reviewed	p.R446Q	1.000	153	0%	278	48.6%	8	37.5%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	NULL
TRIM37	4591	genome.wustl.edu	37	17	57181717	57181717	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001005207.2	-1	reviewed	p.E20D	1.000	160	0%	166	42.8%	14	50%	benign(0.307)	tolerated(0.15)	neutral(0.337)	superfamily_RING/U-box
SMG8	55181	genome.wustl.edu	37	17	57288693	57288693	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018149.6	+1	validated	p.F427	1.000	88	0%	111	46.8%	8	50%	-	-	-	HMMPfam_DUF2146
SMG8	55181	genome.wustl.edu	37	17	57290753	57290753	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018149.6	+1	validated	p.R857W	1.000	253	0%	327	46.2%	9	33.3%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_DUF2146
RPS6KB1	6198	genome.wustl.edu	37	17	57990134	57990134	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003161.2	+1	reviewed	p.L94R	1.000	258	0%	306	43.5%	2	100%	possibly_damaging(0.532)	deleterious(0.03)	deleterious(0.544)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
HEATR6	63897	genome.wustl.edu	37	17	58148077	58148077	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_022070.4	-1	validated	p.A264V	1.000	298	0%	430	17.4%	3	0%	unknown(0)	deleterious(0.02)	-	NULL
BRIP1	83990	genome.wustl.edu	37	17	59763509	59763509	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032043.1	-1	reviewed	p.R865W	0.980	72	0%	91	49.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
INTS2	57508	genome.wustl.edu	37	17	59984900	59984900	+	Silent	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020748.2	-1	validated	p.R358	1.000	178	0%	233	48.1%	8	37.5%	-	-	-	NULL
MED13	9969	genome.wustl.edu	37	17	60040321	60040321	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005121.2	-1	reviewed	p.R1619Q	1.000	87	0%	133	36.1%	18	61.1%	benign(0.233)	tolerated(0.2)	neutral(0.073)	HMMPfam_TRAP_240kDa
EFCAB3	146779	genome.wustl.edu	37	17	60493542	60493542	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001144933.1	+1	validated	p.S442Y	0.996	157	0%	250	39.6%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
MRC2	9902	genome.wustl.edu	37	17	60767314	60767314	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006039.3	+1	validated	p.D1211	0.757	8	0.000	18	0.667	24	37.5%	-	-	-	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like
TANC2	26115	genome.wustl.edu	37	17	61417585	61417585	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_025185.3	+1	validated	p.L493I	1.000	84	0%	111	47.7%	2	0%	benign(0.147)	tolerated(0.32)	neutral(0.037)	superfamily_P-loop containing nucleoside triphosphate hydrolases
TANC2	26115	genome.wustl.edu	37	17	61417666	61417666	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_025185.3	+1	validated	p.L520M	1.000	50	0%	57	40.4%	0	-	probably_damaging(0.964)	deleterious(0)	deleterious(0.851)	superfamily_P-loop containing nucleoside triphosphate hydrolases
LOC342541	342541	genome.wustl.edu	37	17	61549201	61549201	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_292596.4	+1	model	p.E84D	1.000	68	0%	77	41.6%	0	-	-	-	-	HMMPfam_Pro_isomerase,superfamily_Cyclophilin-like
KCNH6	81033	genome.wustl.edu	37	17	61619615	61619615	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_030779.2	+1	reviewed	p.I656	0.999	42	0%	61	42.6%	0	-	-	-	-	HMMPfam_cNMP_binding,HMMSmart_SM00100,superfamily_cAMP-binding domain-like
PSMC5	5705	genome.wustl.edu	37	17	61908745	61908745	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002805.4	+1	reviewed	p.R310H	0.998	64	0%	70	38.6%	152	42.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00382,HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases
SCN4A	6329	genome.wustl.edu	37	17	62026030	62026030	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000334.4	-1	reviewed	p.E1029K	1.000	59	0%	63	49.2%	0	-	benign(0.076)	tolerated(0.08)	neutral(0.305)	HMMPfam_Na_trans_assoc,superfamily_Voltage-gated potassium channels
TEX2	55852	genome.wustl.edu	37	17	62272408	62272408	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018469.3	-1	validated	p.A564	0.221	242	0%	317	40.4%	2	100%	-	-	-	HMMSmart_PH
AXIN2	8313	genome.wustl.edu	37	17	63533621	63533621	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004655.3	-1	reviewed	p.T511	0.940	202	0%	275	48.7%	8	25%	-	-	-	NULL
CEP112	201134	genome.wustl.edu	37	17	63848065	63848065	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_145036.3	-1	validated	p.L751I	1.000	220	0%	308	24.7%	4	0%	probably_damaging(0.971)	tolerated(0.46)	neutral(0.425)	NULL
CEP112	201134	genome.wustl.edu	37	17	64024447	64024447	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_145036.3	-1	validated	p.R527I	1.000	356	0%	517	42.7%	0	-	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	NULL
CEP112	201134	genome.wustl.edu	37	17	64026126	64026126	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_145036.3	-1	validated	p.E412*	1.000	189	0%	246	45.9%	3	0%	-	-	-	NULL
PRKCA	5578	genome.wustl.edu	37	17	64492393	64492393	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002737.2	+1	reviewed	p.D94N	1.000	272	0%	432	48.8%	0	-	benign(0.05)	tolerated(0.11)	neutral(0.275)	NULL
PRKCA	5578	genome.wustl.edu	37	17	64641613	64641613	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002737.2	+1	reviewed	p.E171D	0.717	188	0%	253	46.6%	0	-	benign(0)	tolerated(0.97)	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
CACNG4	27092	genome.wustl.edu	37	17	65014337	65014337	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014405.2	+1	reviewed	p.H85N	1.000	122	0%	137	48.2%	5	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_PMP22_Claudin
HELZ	9931	genome.wustl.edu	37	17	65163687	65163687	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014877.3	-1	validated	p.E552D	1.000	338	0%	455	42.6%	1	100%	benign(0.044)	tolerated(0.11)	neutral(0.274)	NULL
NOL11	25926	genome.wustl.edu	37	17	65715895	65715895	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015462.3	+1	provisional	p.D83Y	1.000	104	0%	126	10.3%	23	13%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
BPTF	2186	genome.wustl.edu	37	17	65888128	65888128	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_182641.3	+1	reviewed	p.K678T	1.000	65	0%	94	34%	6	16.6%	possibly_damaging(0.674)	tolerated(0.12)	deleterious(0.500)	NULL
AMZ2	51321	genome.wustl.edu	37	17	66250635	66250635	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001033569.1	+1	validated	p.S226*	0.002	177	0%	210	40.5%	10	0%	-	-	-	"HMMPfam_Peptidase_M54,superfamily_Metalloproteases (""zincins"") catalytic domain"
SLC16A6	9120	genome.wustl.edu	37	17	66268802	66268802	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004694.4	-1	validated	p.F161	0.058	202	0%	256	44.1%	1	0%	-	-	-	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
SLC16A6	9120	genome.wustl.edu	37	17	66274339	66274339	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004694.4	-1	validated	p.I41	1.000	142	0%	191	48.7%	0	-	-	-	-	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
ABCA8	10351	genome.wustl.edu	37	17	66880023	66880023	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007168.2	-1	reviewed	p.P1166S	1.000	168	0%	234	40.6%	0	-	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	NULL
ABCA8	10351	genome.wustl.edu	37	17	66937057	66937057	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007168.2	-1	reviewed	p.P48H	0.001	113	0%	155	36.8%	1	0%	possibly_damaging(0.658)	deleterious(0.03)	deleterious(0.597)	NULL
ABCA6	23460	genome.wustl.edu	37	17	67082843	67082843	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_080284.2	-1	reviewed	p.E1285*	1.000	499	0%	650	44.3%	0	-	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCA6	23460	genome.wustl.edu	37	17	67094159	67094159	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_080284.2	-1	reviewed	p.G1008*	0.000	114	0%	148	28.4%	0	-	-	-	-	NULL
ABCA6	23460	genome.wustl.edu	37	17	67110931	67110931	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_080284.2	-1	reviewed	p.G585V	1.000	348	0%	418	42.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCA6	23460	genome.wustl.edu	37	17	67114056	67114056	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_080284.2	-1	reviewed	p.K493R	1.000	293	0%	350	41.4%	0	-	benign(0.309)	tolerated(0.26)	neutral(0.131)	superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCA6	23460	genome.wustl.edu	37	17	67129836	67129836	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_080284.2	-1	reviewed	p.R246I	1.000	309	0%	322	40.7%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ABCA10	10349	genome.wustl.edu	37	17	67178399	67178399	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_080282.3	-1	reviewed	p.K888N	0.327	117	0%	122	40.2%	0	-	probably_damaging(0.975)	tolerated(0.13)	deleterious(0.669)	NULL
ABCA5	23461	genome.wustl.edu	37	17	67293342	67293342	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018672.3	-1	reviewed	p.E476*	1.000	106	0%	135	54.8%	0	-	-	-	-	NULL
KCNJ16	3773	genome.wustl.edu	37	17	68128924	68128924	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018658.1	+1	reviewed	p.T232	0.995	43	0%	68	47.1%	1	100%	-	-	-	HMMPfam_IRK,superfamily_Ig_E-set
KCNJ2	3759	genome.wustl.edu	37	17	68171955	68171955	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000891.2	+1	reviewed	p.D259N	1.000	185	0%	255	43.9%	1	0%	probably_damaging(1)	tolerated(0.21)	deleterious(0.544)	HMMPfam_IRK,superfamily_E set domains
SOX9	6662	genome.wustl.edu	37	17	70120448	70120448	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000346.3	+1	reviewed	p.S484A	0.983	81	0%	127	48%	16	43.7%	benign(0)	tolerated(0.48)	neutral(0.011)	NULL
SDK2	54549	genome.wustl.edu	37	17	71334847	71334847	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001144952.1	-1	provisional	p.R2133Q	1.000	135	0%	204	36.3%	49	40.8%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SDK2	54549	genome.wustl.edu	37	17	71415386	71415386	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001144952.1	-1	provisional	p.R702Q	1.000	194	0%	207	49.3%	10	40%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
DNAI2	64446	genome.wustl.edu	37	17	72278079	72278079	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_023036.4	+1	reviewed	p.F41	0.859	48	0%	59	47.5%	3	0%	-	-	-	NULL
DNAI2	64446	genome.wustl.edu	37	17	72283194	72283194	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_023036.4	+1	reviewed	p.V142M	0.983	155	0%	194	18.6%	3	0%	benign(0.186)	tolerated(0.15)	neutral(0.259)	NULL
LOC100289576	100289576	genome.wustl.edu	37	17	72436926	72436926	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_002343581.1	-1	model	p.E153K	0.998	123	0%	160	20.6%	199	25.1%	-	-	-	NULL
CD300LB	124599	genome.wustl.edu	37	17	72522080	72522080	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_174892.2	-1	validated	p.K96N	0.000	265	0%	373	27.6%	0	-	benign(0.021)	tolerated(0.15)	neutral(0.242)	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
OTOP2	92736	genome.wustl.edu	37	17	72929470	72929470	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_178160.2	+1	validated	p.L507	1.000	82	0%	124	47.6%	0	-	-	-	-	HMMPfam_DUF270
CDR2L	30850	genome.wustl.edu	37	17	72995709	72995709	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014603.2	+1	validated	p.E64K	1.000	105	0%	111	37.8%	29	55.1%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
CDR2L	30850	genome.wustl.edu	37	17	72998244	72998244	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014603.2	+1	validated	p.R143*	0.888	30	0%	56	50%	31	29%	-	-	-	NULL
NUP85	79902	genome.wustl.edu	37	17	73231285	73231285	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024844.3	+1	reviewed	p.E620K	0.057	291	0%	330	19.1%	32	9.3%	benign(0.001)	tolerated(0.76)	neutral(0.001)	NULL
GGA3	23163	genome.wustl.edu	37	17	73235896	73235896	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_138619.2	-1	reviewed	p.L519	0.000	37	0%	24	16.7%	15	13.3%	-	-	-	NULL
GGA3	23163	genome.wustl.edu	37	17	73238523	73238523	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_138619.2	-1	reviewed	p.R214H	1.000	217	0%	340	44.4%	42	54.7%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMPfam_GAT,superfamily_GAT-like domain
KIAA0195	9772	genome.wustl.edu	37	17	73489961	73489961	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014738.4	+1	validated	p.K791E	1.000	21	0%	22	50%	46	39.1%	probably_damaging(0.995)	tolerated(0.05)	deleterious(0.803)	NULL
UNC13D	201294	genome.wustl.edu	37	17	73832757	73832757	+	Silent	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_199242.2	-1	reviewed	p.S398	0.942	78	0%	78	39.7%	7	42.8%	-	-	-	NULL
CDK3	1018	genome.wustl.edu	37	17	73999285	73999285	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001258.2	+1	validated	p.K200Q	1.000	132	0%	128	43%	16	43.7%	benign(0.163)	tolerated(0.09)	neutral(0.311)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
CDK3	1018	genome.wustl.edu	37	17	73999286	73999286	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001258.2	+1	validated	p.K200T	1.000	134	0%	131	43.5%	16	43.7%	benign(0.28)	deleterious(0.02)	deleterious(0.469)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
MFSD11	79157	genome.wustl.edu	37	17	74765944	74765944	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024311.2	+1	provisional	p.E289*	1.000	449	0%	437	43.2%	3	33.3%	-	-	-	superfamily_MFS general substrate transporter
SEPT9	10801	genome.wustl.edu	37	17	75486856	75486856	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001113491.1	+1	reviewed	p.R432H	1.000	101	0%	171	39.2%	495	49.6%	benign(0.076)	tolerated(0.13)	neutral(0.258)	HMMPfam_Septin,superfamily_P-loop containing nucleoside triphosphate hydrolases
BIRC5	332	genome.wustl.edu	37	17	76219693	76219693	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001012270.1	+1	reviewed	p.F123	0.000	72	0%	98	51%	11	45.4%	-	-	-	NULL
BIRC5	332	genome.wustl.edu	37	17	76219734	76219734	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001012270.1	+1	reviewed	p.S137Y	0.043	61	0%	111	42.3%	19	52.6%	unknown(0)	-	-	NULL
DNAH17	8632	genome.wustl.edu	37	17	76423138	76423138	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000389840	-1	known	p.M4237V	1.000	56	0%	69	10.1%	0	-	benign(0.009)	tolerated(0.18)	neutral(0.057)	HMMPfam_Dynein_heavy
DNAH17	8632	genome.wustl.edu	37	17	76451753	76451753	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000389840	-1	known	p.F3367L	0.001	67	0%	92	41.3%	0	-	benign(0.055)	tolerated(0.67)	neutral(0.006)	NULL
DNAH17	8632	genome.wustl.edu	37	17	76490218	76490218	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000389840	-1	known	p.A2089V	0.998	29	0%	40	60%	0	-	benign(0.001)	deleterious(0.01)	neutral(0.406)	superfamily_P-loop containing nucleoside triphosphate hydrolases
USP36	57602	genome.wustl.edu	37	17	76832399	76832399	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_025090.3	-1	validated	p.K16T	1.000	98	0%	92	41.3%	10	50%	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	NULL
LGALS3BP	3959	genome.wustl.edu	37	17	76968555	76968555	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005567.3	-1	reviewed	p.F287	0.998	19	0%	20	35%	825	24.8%	-	-	-	HMMPfam_BACK
CCDC40	55036	genome.wustl.edu	37	17	78058746	78058746	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017950.2	+1	validated	p.F732V	0.064	44	0%	71	35.2%	6	66.6%	benign(0.252)	tolerated(0.53)	neutral(0.034)	NULL
ENSG00000173818	0	genome.wustl.edu	37	17	78409985	78409985	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000397538	+1	known	p.R62Q	0.034	222	0%	304	38.8%	23	8.6%	-	-	-	NULL
RPTOR	57521	genome.wustl.edu	37	17	78796919	78796919	+	Silent	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020761.2	+1	reviewed	p.A344	0.729	234	0%	281	47.7%	4	50%	-	-	-	NULL
BAIAP2	10458	genome.wustl.edu	37	17	79073733	79073733	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017451.2	+1	reviewed	p.I165	0.078	44	0%	68	45.6%	277	42.5%	-	-	-	HMMPfam_IMD
BAIAP2	10458	genome.wustl.edu	37	17	79079896	79079896	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017451.2	+1	reviewed	p.F429L	1.000	124	0%	152	36.8%	147	44.8%	probably_damaging(0.99)	tolerated(0.16)	deleterious(0.501)	HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_SH3_2
HGS	9146	genome.wustl.edu	37	17	79668134	79668134	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004712.3	+1	provisional	p.I732	0.011	92	0%	106	44.3%	210	40.9%	-	-	-	NULL
FAM195B	348262	genome.wustl.edu	37	17	79781126	79781126	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001093767.1	-1	validated	p.S97	0.998	46	0%	68	35.3%	58	37.9%	-	-	-	NULL
NOTUM	147111	genome.wustl.edu	37	17	79914800	79914800	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_178493.5	-1	validated	p.T282	0.044	29	0%	45	46.7%	2	50%	-	-	-	HMMPfam_PAE
FASN	2194	genome.wustl.edu	37	17	80046167	80046167	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004104.4	-1	reviewed	p.S870	0.270	59	0%	89	34.8%	152	47.3%	-	-	-	NULL
RAB40B	10966	genome.wustl.edu	37	17	80615899	80615899	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006822.2	-1	reviewed	p.S226L	1.000	174	0%	226	46%	21	71.4%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_SOCS_box,HMMSmart_SOCS
B3GNTL1	146712	genome.wustl.edu	37	17	80914642	80914642	+	Silent	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001009905.1	-1	validated	p.R312	0.999	246	0%	251	31.5%	21	61.9%	-	-	-	NULL
ENSG00000173213	0	genome.wustl.edu	37	18	47717	47717	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000308911	-1	known	p.K336N	1.000	93	0%	120	11.7%	0	-	benign(0.335)	deleterious(0)	deleterious(0.550)	superfamily_Tub_FtsZ_C,HMMPfam_Tubulin_C
USP14	9097	genome.wustl.edu	37	18	203173	203173	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005151.3	+1	reviewed	p.N340H	1.000	145	0%	179	50.3%	12	58.3%	probably_damaging(0.998)	deleterious(0.05)	deleterious(0.820)	HMMPfam_UCH,superfamily_SSF54001
USP14	9097	genome.wustl.edu	37	18	204645	204645	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005151.3	+1	reviewed	p.K373Q	1.000	228	0%	294	48%	13	46.1%	possibly_damaging(0.839)	deleterious(0.02)	deleterious(0.704)	HMMPfam_UCH,superfamily_SSF54001
CETN1	1068	genome.wustl.edu	37	18	580561	580561	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004066.1	+1	reviewed	p.K51N	1.000	49	0%	89	47.2%	0	-	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMSmart_SM00054,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_EF-hand
ENOSF1	55556	genome.wustl.edu	37	18	685927	685927	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_202758.2	-1	validated	p.K266N	0.964	234	0%	332	38%	140	50%	benign(0)	tolerated(0.51)	neutral(0.009)	HMMPfam_MR_MLE,superfamily_SSF51604
ENOSF1	55556	genome.wustl.edu	37	18	691103	691103	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_202758.2	-1	validated	p.I188R	1.000	149	0%	171	43.9%	42	40.4%	benign(0.196)	tolerated(0.07)	neutral(0.338)	superfamily_SSF51604
MYOM1	8736	genome.wustl.edu	37	18	3164279	3164279	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003803.3	-1	reviewed	p.R500*	1.000	149	0%	184	48.9%	0	-	-	-	-	HMMSmart_SM00409,superfamily_Immunoglobulin
MYOM1	8736	genome.wustl.edu	37	18	3187531	3187531	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003803.3	-1	reviewed	p.E292D	1.000	180	0%	296	43.2%	2	50%	benign(0.429)	tolerated(0.22)	neutral(0.182)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
EPB41L3	23136	genome.wustl.edu	37	18	5396315	5396315	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012307.2	-1	provisional	p.T953M	1.000	259	0%	380	42.6%	4	0%	possibly_damaging(0.677)	deleterious(0)	deleterious(0.685)	NULL
EPB41L3	23136	genome.wustl.edu	37	18	5419806	5419806	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012307.2	-1	provisional	p.P470	0.139	143	0%	159	40.9%	10	0%	-	-	-	NULL
PTPRM	5797	genome.wustl.edu	37	18	8113688	8113688	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001105244.1	+1	reviewed	p.Y687	1.000	139	0%	126	42.1%	3	0%	-	-	-	HMMSmart_SM00060,superfamily_Fibronectin type III
ANKRD12	23253	genome.wustl.edu	37	18	9255009	9255009	+	Missense_Mutation	SNP	C	C	T	rs187421957	by1000genomes	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015208.3	+1	validated	p.R582W	0.996	76	0%	106	40.6%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Ankyrin repeat
TXNDC2	84203	genome.wustl.edu	37	18	9887130	9887130	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001098529.1	+1	validated	p.Q218	0.000	418	0%	522	43.1%	0	-	-	-	-	NULL
PIEZO2	63895	genome.wustl.edu	37	18	10689698	10689698	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000503781	-1	known	p.I328	0.997	90	0%	120	44.2%	0	-	-	-	-	NULL
MPPE1	65258	genome.wustl.edu	37	18	11897251	11897251	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_023075.4	-1	validated	p.E5K	0.000	198	0%	243	20.6%	7	42.8%	benign(0.034)	tolerated(0.63)	neutral(0.005)	NULL
IMPA2	3613	genome.wustl.edu	37	18	12014301	12014301	+	Missense_Mutation	SNP	G	G	A	rs180896388	by1000genomes	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014214.1	+1	validated	p.R140Q	1.000	100	0%	105	50.5%	73	61.6%	benign(0.048)	tolerated(0.76)	neutral(0.004)	HMMPfam_Inositol_P,superfamily_Carbohydrate phosphatase
IMPA2	3613	genome.wustl.edu	37	18	12030427	12030427	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014214.1	+1	validated	p.T279	0.643	87	0%	101	40.6%	360	37.2%	-	-	-	HMMPfam_Inositol_P,superfamily_Carbohydrate phosphatase
SLMO1	10650	genome.wustl.edu	37	18	12421590	12421590	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001142405.1	+1	validated	p.D85N	1.000	225	0%	288	40.3%	0	-	probably_damaging(0.998)	tolerated(0.16)	deleterious(0.534)	HMMPfam_PRELI
SPIRE1	56907	genome.wustl.edu	37	18	12454422	12454422	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001128626.1	-1	validated	p.R567C	1.000	444	0%	522	41.8%	3	66.6%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_FYVE/PHD zinc finger
CEP192	55125	genome.wustl.edu	37	18	13095626	13095626	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032142.3	+1	validated	p.E1531K	0.014	89	0%	147	42.2%	8	50%	benign(0.002)	tolerated(0.16)	neutral(0.059)	NULL
MC5R	4161	genome.wustl.edu	37	18	13826688	13826688	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005913.1	+1	provisional	p.E308D	1.000	121	0%	129	52.7%	0	-	benign(0.093)	tolerated(0.07)	neutral(0.326)	superfamily_Family A G protein-coupled receptor-like
LOC646359	646359	genome.wustl.edu	37	18	14378220	14378220	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_929288.3	-1	model	p.E181D	0.303	43	0%	74	48.6%	0	-	-	-	-	HMMPfam_TRF,superfamily_Telomeric repeat binding factor (TRF) dimerisation domain
LOC100288291	100288291	genome.wustl.edu	37	18	14705656	14705656	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_002344133.1	+1	model	p.K52E	0.689	17	0%	28	21.4%	0	-	-	-	-	NULL
ANKRD30B	374860	genome.wustl.edu	37	18	14763822	14763822	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001145029.1	+1	validated	p.L320M	0.001	173	0%	197	26.9%	0	-	probably_damaging(0.962)	deleterious(0.01)	deleterious(0.810)	NULL
ANKRD30B	374860	genome.wustl.edu	37	18	14850245	14850245	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001145029.1	+1	validated	p.R1024I	0.975	77	1.3%	99	16.2%	0	-	probably_damaging(0.986)	deleterious(0.04)	deleterious(0.783)	NULL
ANKRD30B	374860	genome.wustl.edu	37	18	14851652	14851652	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001145029.1	+1	validated	p.I1118F	0.941	152	0%	170	38.8%	0	-	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	NULL
ANKRD30B	374860	genome.wustl.edu	37	18	14852417	14852417	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001145029.1	+1	validated	p.E1373K	1.000	18	0%	21	38.1%	0	-	possibly_damaging(0.931)	tolerated(0.07)	deleterious(0.697)	NULL
GREB1L	80000	genome.wustl.edu	37	18	19024296	19024296	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001142966.1	+1	provisional	p.L440S	1.000	319	0%	430	44.9%	0	-	unknown(0)	tolerated(0.09)	-	NULL
ABHD3	171586	genome.wustl.edu	37	18	19263925	19263925	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_138340.4	-1	reviewed	p.C171G	1.000	249	0%	280	50.7%	2	50%	benign(0.001)	tolerated(0.35)	neutral(0.021)	HMMPfam_Abhydrolase_1,superfamily_alpha/beta-Hydrolases
MIR1-2	406905	genome.wustl.edu	37	18	19409028	19409028	+	RNA	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000384961	-1	known	NULL	1.000	211	0%	307	26.4%	0	-	-	-	-	-
CTAGE1	64693	genome.wustl.edu	37	18	19995571	19995571	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_172241.2	-1	validated	p.R735I	0.050	123	0%	179	42.5%	0	-	unknown(0)	deleterious(0)	-	NULL
CTAGE1	64693	genome.wustl.edu	37	18	19996985	19996985	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_172241.2	-1	validated	p.E264*	0.161	362	0%	454	40.5%	0	-	-	-	-	NULL
CABLES1	91768	genome.wustl.edu	37	18	20833719	20833719	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001100619.2	+1	validated	p.A527V	1.000	61	0%	92	41.3%	35	48.5%	benign(0.221)	tolerated(0.1)	neutral(0.308)	superfamily_Cyclin-like
RIOK3	8780	genome.wustl.edu	37	18	21057155	21057155	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003831.3	+1	reviewed	p.D423N	1.000	252	0%	287	46.7%	29	34.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00090,superfamily_Protein kinase-like (PK-like),HMMPfam_RIO1
NPC1	4864	genome.wustl.edu	37	18	21125008	21125008	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000271.4	-1	reviewed	p.V621	0.082	148	0%	198	18.2%	33	9%	-	-	-	HMMPfam_Patched,superfamily_SSF82866
LAMA3	3909	genome.wustl.edu	37	18	21338420	21338420	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_198129.1	+1	reviewed	p.G336	0.888	39	0%	50	44%	4	50%	-	-	-	HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,superfamily_EGF/Laminin
LAMA3	3909	genome.wustl.edu	37	18	21496564	21496564	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_198129.1	+1	reviewed	p.R2610*	0.997	230	0%	282	45%	12	16.6%	-	-	-	superfamily_Concanavalin A-like lectins/glucanases
CDH2	1000	genome.wustl.edu	37	18	25570266	25570266	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001792.3	-1	reviewed	p.E465K	1.000	161	0%	176	46.6%	2	0%	benign(0.001)	tolerated(0.43)	neutral(0.013)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
CDH2	1000	genome.wustl.edu	37	18	25583052	25583052	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001792.3	-1	reviewed	p.S310Y	1.000	195	0%	290	47.9%	10	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
CDH2	1000	genome.wustl.edu	37	18	25585924	25585924	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001792.3	-1	reviewed	p.Q246*	1.000	161	0%	211	47.9%	2	0%	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
DSC2	1824	genome.wustl.edu	37	18	28654758	28654758	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024422.3	-1	reviewed	p.E593D	0.986	279	0%	394	44.7%	52	63.4%	benign(0)	tolerated(0.6)	neutral(0.004)	superfamily_Cadherin-like
DSG1	1828	genome.wustl.edu	37	18	28913675	28913675	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001942.2	+1	reviewed	p.E270K	0.989	185	0%	283	28.3%	0	-	benign(0.05)	tolerated(0.06)	neutral(0.326)	superfamily_Cadherin-like
DSG4	147409	genome.wustl.edu	37	18	28986171	28986171	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001134453.1	+1	reviewed	p.D590N	0.999	67	0%	113	38.9%	1	100%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	superfamily_Cadherin
DSG3	1830	genome.wustl.edu	37	18	29044255	29044255	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001944.2	+1	reviewed	p.K394R	1.000	165	0%	203	36.9%	0	-	benign(0.003)	tolerated(0.51)	neutral(0.009)	superfamily_Cadherin
MEP1B	4225	genome.wustl.edu	37	18	29787230	29787230	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005925.2	+1	validated	p.F188C	1.000	72	0%	129	38%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	"HMMPfam_Astacin,HMMSmart_SM00235,superfamily_Metalloproteases (""zincins"") catalytic domain"
MEP1B	4225	genome.wustl.edu	37	18	29797905	29797905	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005925.2	+1	validated	p.R690*	0.000	216	0%	296	40.5%	0	-	-	-	-	NULL
KLHL14	57565	genome.wustl.edu	37	18	30260153	30260153	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020805.1	-1	provisional	p.I523L	1.000	245	0%	347	22.5%	16	31.2%	possibly_damaging(0.77)	tolerated(0.14)	deleterious(0.535)	HMMPfam_Kelch_1,HMMSmart_Kelch,superfamily_Gal_oxid_central
ASXL3	80816	genome.wustl.edu	37	18	31319877	31319877	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_030632.1	+1	provisional	p.T837A	0.949	118	0%	149	24.8%	0	-	benign(0)	deleterious(0.04)	neutral(0.349)	NULL
NOL4	8715	genome.wustl.edu	37	18	31709848	31709848	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003787.3	-1	validated	p.R134I	1.000	399	0%	466	41%	0	-	probably_damaging(0.959)	deleterious(0)	deleterious(0.847)	NULL
DTNA	1837	genome.wustl.edu	37	18	32431827	32431827	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001390.4	+1	reviewed	p.I462	1.000	118	0%	168	45.2%	0	-	-	-	-	NULL
MAPRE2	10982	genome.wustl.edu	37	18	32681978	32681978	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014268.2	+1	reviewed	p.K155N	1.000	83	0%	97	47.4%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CH,superfamily_Calponin-homology domain CH-domain
ZSCAN30	100101467	genome.wustl.edu	37	18	32833517	32833517	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001112734.2	-1	validated	p.R461I	1.000	335	0%	379	41.2%	6	50%	possibly_damaging(0.838)	deleterious(0)	deleterious(0.764)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZSCAN30	100101467	genome.wustl.edu	37	18	32833937	32833937	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001112734.2	-1	validated	p.R321K	1.000	178	0%	219	41.6%	6	16.6%	benign(0.16)	tolerated(0.21)	neutral(0.058)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF24	7572	genome.wustl.edu	37	18	32917559	32917559	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006965.2	-1	validated	p.K248N	1.000	173	0%	225	44.4%	2	50%	possibly_damaging(0.723)	deleterious(0.01)	deleterious(0.668)	superfamily_SSF57667
GALNT1	2589	genome.wustl.edu	37	18	33271038	33271038	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020474.3	+1	reviewed	p.R347	0.991	224	0%	298	45.6%	21	47.6%	-	-	-	superfamily_Nucleotide-diphospho-sugar transferases
C18orf21	83608	genome.wustl.edu	37	18	33558935	33558935	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_031446.3	+1	validated	p.F210Y	1.000	194	0%	230	44.8%	1	100%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
ELP2	55250	genome.wustl.edu	37	18	33721159	33721159	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018255.1	+1	provisional	p.D195Y	0.998	294	0%	315	39.7%	13	53.8%	benign(0.133)	deleterious(0.03)	neutral(0.376)	superfamily_WD40 repeat-like
MOCOS	55034	genome.wustl.edu	37	18	33840066	33840066	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017947.2	+1	validated	p.I779	0.165	395	0%	505	43.6%	4	0%	-	-	-	HMMPfam_MOSC,superfamily_PK beta-barrel domain-like
CELF4	56853	genome.wustl.edu	37	18	34833888	34833888	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020180.3	-1	reviewed	p.F449	1.000	44	0%	65	50.8%	0	-	-	-	-	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
SYT4	6860	genome.wustl.edu	37	18	40854127	40854127	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020783.3	-1	validated	p.K89N	1.000	457	0%	531	40.9%	0	-	benign(0)	tolerated(0.29)	neutral(0.029)	NULL
SETBP1	26040	genome.wustl.edu	37	18	42531308	42531308	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015559.2	+1	validated	p.K668T	1.000	12	0%	13	61.5%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
SETBP1	26040	genome.wustl.edu	37	18	42531950	42531950	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015559.2	+1	validated	p.A882V	1.000	20	0%	23	60.9%	1	100%	possibly_damaging(0.896)	deleterious(0.03)	deleterious(0.718)	NULL
PSTPIP2	9050	genome.wustl.edu	37	18	43585447	43585447	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024430.3	-1	validated	p.K135N	1.000	319	0%	329	41.6%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
ATP5A1	498	genome.wustl.edu	37	18	43664517	43664517	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001001937.1	-1	reviewed	p.F511L	1.000	130	0%	161	28%	471	28.4%	probably_damaging(0.969)	tolerated(1)	neutral(0.411)	HMMPfam_ATP-synt_ab_C,superfamily_C-terminal domain of alpha and beta subunits of F1 ATP synthase
ATP5A1	498	genome.wustl.edu	37	18	43669676	43669676	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001001937.1	-1	reviewed	p.R169H	1.000	104	0%	148	45.3%	804	47.2%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	superfamily_P-loop containing nucleoside triphosphate hydrolases
HAUS1	115106	genome.wustl.edu	37	18	43708294	43708294	+	RNA	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NR_026978.1	+1	validated	NULL	0.000	19	0%	17	52.9%	0	-	-	-	-	-
RNF165	494470	genome.wustl.edu	37	18	44036036	44036036	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152470.2	+1	validated	p.D306Y	1.000	192	0%	253	25.7%	0	-	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMSmart_RING,HMMPfam_zf-C3HC4,superfamily_SSF57850
LOXHD1	125336	genome.wustl.edu	37	18	44089759	44089759	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_144612.6	-1	reviewed	p.D1467N	1.000	148	0%	187	43.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PLAT,superfamily_Lipase_LipOase
LOXHD1	125336	genome.wustl.edu	37	18	44102263	44102263	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_144612.6	-1	reviewed	p.Y1351C	1.000	81	0%	123	40.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Lipase_LipOase
LOXHD1	125336	genome.wustl.edu	37	18	44146307	44146307	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_144612.6	-1	reviewed	p.P506T	1.000	54	0%	70	44.3%	0	-	benign(0.003)	tolerated(0.31)	neutral(0.027)	HMMPfam_PLAT,HMMSmart_LH2,superfamily_Lipase_LipOase
LOXHD1	125336	genome.wustl.edu	37	18	44181282	44181282	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000441551	-1	known	p.G325R	0.120	85	0%	132	36.4%	0	-	-	-	-	HMMPfam_PLAT,HMMSmart_SM00308,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain)
LOXHD1	125336	genome.wustl.edu	37	18	44184109	44184109	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000441551	-1	known	p.N262D	1.000	202	0%	285	14%	0	-	-	-	-	HMMPfam_PLAT,HMMSmart_SM00308,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain)
ST8SIA5	29906	genome.wustl.edu	37	18	44260370	44260370	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_013305.4	-1	reviewed	p.D256N	1.000	28	0%	42	54.8%	2	0%	possibly_damaging(0.919)	tolerated(0.38)	neutral(0.387)	HMMPfam_Glyco_transf_29
TCEB3B	51224	genome.wustl.edu	37	18	44559393	44559393	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016427.2	-1	reviewed	p.R748K	0.000	184	0%	208	46.6%	0	-	benign(0)	tolerated(0.56)	neutral(0.006)	NULL
DYM	54808	genome.wustl.edu	37	18	46645263	46645263	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017653.3	-1	reviewed	p.R533*	1.000	296	0%	382	43.2%	33	12.1%	-	-	-	HMMPfam_Dymeclin
DYM	54808	genome.wustl.edu	37	18	46906113	46906113	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017653.3	-1	reviewed	p.R70Q	1.000	322	0%	326	45.4%	2	0%	probably_damaging(0.997)	tolerated(0.58)	deleterious(0.471)	HMMPfam_Dymeclin
RPL17	6139	genome.wustl.edu	37	18	47015853	47015853	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000985.3	-1	reviewed	p.R128Q	0.987	122	0%	177	49.2%	494	46.3%	possibly_damaging(0.749)	deleterious(0)	deleterious(0.720)	HMMPfam_Ribosomal_L22,superfamily_Ribosomal protein L22,PatternScan_RIBOSOMAL_L22
CCDC11	220136	genome.wustl.edu	37	18	47777942	47777942	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_145020.3	-1	validated	p.N229S	0.039	205	0%	316	44.3%	5	80%	possibly_damaging(0.585)	tolerated(0.13)	neutral(0.454)	NULL
LOC100287130	100287130	genome.wustl.edu	37	18	47808950	47808950	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_002343599.1	+1	model	p.S50	0.003	63	0%	68	17.6%	306	14%	-	-	-	NULL
MAPK4	5596	genome.wustl.edu	37	18	48190559	48190559	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002747.3	+1	reviewed	p.I77	0.897	55	0%	68	44.1%	0	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
SMAD4	4089	genome.wustl.edu	37	18	48604735	48604735	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005359.5	+1	reviewed	p.K519N	0.999	91	0%	132	43.9%	33	72.7%	benign(0.074)	deleterious(0.01)	neutral(0.411)	HMMPfam_MH2,HMMSmart_SM00524,superfamily_SMAD/FHA domain
DCC	1630	genome.wustl.edu	37	18	50589677	50589677	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005215.3	+1	reviewed	p.P330T	1.000	279	0%	358	42.5%	0	-	possibly_damaging(0.774)	tolerated(0.09)	deleterious(0.585)	superfamily_Immunoglobulin
DCC	1630	genome.wustl.edu	37	18	50832017	50832017	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005215.3	+1	reviewed	p.R661*	1.000	92	0%	115	17.4%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
TXNL1	9352	genome.wustl.edu	37	18	54278314	54278314	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004786.2	-1	validated	p.S250	1.000	233	0.4%	244	43%	84	52.3%	-	-	-	HMMPfam_DUF1000
TXNL1	9352	genome.wustl.edu	37	18	54281690	54281690	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004786.2	-1	validated	p.R234C	1.000	235	0.4%	326	41.7%	73	45.2%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_DUF1000
TXNL1	9352	genome.wustl.edu	37	18	54291595	54291595	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004786.2	-1	validated	p.G98E	1.000	455	0%	494	43.7%	46	50%	probably_damaging(0.984)	tolerated(0.17)	deleterious(0.489)	superfamily_Thiordxn-like_fd,HMMPfam_Thioredoxin
ONECUT2	9480	genome.wustl.edu	37	18	55143765	55143765	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004852.2	+1	reviewed	p.F442S	0.992	61	0%	93	45.2%	0	-	benign(0.221)	tolerated(0.4)	neutral(0.038)	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
ATP8B1	5205	genome.wustl.edu	37	18	55322595	55322595	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005603.4	-1	reviewed	p.S921L	1.000	105	0%	176	47.2%	182	37.9%	probably_damaging(0.995)	deleterious(0.02)	deleterious(0.841)	superfamily_SSF56784,superfamily_SSF81665
ATP8B1	5205	genome.wustl.edu	37	18	55362729	55362729	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005603.4	-1	reviewed	p.I245T	1.000	454	0%	462	46.8%	5	40%	benign(0.005)	tolerated(0.59)	neutral(0.004)	superfamily_SSF81653,superfamily_SSF81665
LOC284288	284288	genome.wustl.edu	37	18	55505736	55505736	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_210365.1	+1	model	p.S10L	1.000	37	0%	44	27.3%	0	-	-	-	-	HMMPfam_Ribosomal_L24e,HMMSmart_SM00746,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
ALPK2	115701	genome.wustl.edu	37	18	56246486	56246486	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_052947.3	-1	validated	p.M508V	0.000	409	0%	519	10.8%	0	-	benign(0)	tolerated(1)	-	NULL
ALPK2	115701	genome.wustl.edu	37	18	56247608	56247608	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_052947.3	-1	validated	p.E134*	0.000	555	0%	678	42%	0	-	-	-	-	NULL
ALPK2	115701	genome.wustl.edu	37	18	56247745	56247745	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_052947.3	-1	validated	p.S88L	0.029	157	1.3%	185	36.8%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
CDH20	28316	genome.wustl.edu	37	18	59212314	59212314	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_031891.2	+1	reviewed	p.F529V	1.000	155	0%	248	46.8%	0	-	benign(0.041)	deleterious(0.04)	neutral(0.351)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PIGN	23556	genome.wustl.edu	37	18	59763132	59763132	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012327.5	-1	reviewed	p.L710S	0.313	124	0%	199	41.2%	30	46.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PigN
SERPINB12	89777	genome.wustl.edu	37	18	61223532	61223532	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_080474.1	+1	provisional	p.R47I	0.430	221	0%	265	40.4%	0	-	probably_damaging(0.984)	deleterious(0)	deleterious(0.875)	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
SERPINB7	8710	genome.wustl.edu	37	18	61465873	61465873	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001040147.1	+1	validated	p.S164R	0.682	211	0%	255	18.4%	4	0%	probably_damaging(0.994)	tolerated(0.08)	deleterious(0.752)	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
SERPINB2	5055	genome.wustl.edu	37	18	61569779	61569779	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001143818.1	+1	validated	p.D274N	0.289	259	0%	317	42.9%	1	0%	possibly_damaging(0.879)	deleterious(0)	deleterious(0.787)	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
CDH7	1005	genome.wustl.edu	37	18	63430112	63430112	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004361.2	+1	reviewed	p.L12M	0.993	321	0%	348	47.7%	0	-	probably_damaging(0.991)	tolerated(0.2)	deleterious(0.493)	NULL
CDH19	28513	genome.wustl.edu	37	18	64172541	64172541	+	Splice_Site	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021153.2	-1	reviewed	e11-2	1.000	37	0%	24	41.7%	0	-	-	-	-	-
DSEL	92126	genome.wustl.edu	37	18	65178653	65178653	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032160.2	-1	validated	p.E1075*	0.293	62	0%	80	36.2%	0	-	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
DSEL	92126	genome.wustl.edu	37	18	65181363	65181363	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032160.2	-1	validated	p.E171D	1.000	64	0%	62	24.2%	0	-	benign(0.028)	tolerated(0.49)	neutral(0.012)	NULL
TMX3	54495	genome.wustl.edu	37	18	66344237	66344237	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_019022.3	-1	validated	p.S433I	0.000	341	0%	423	44%	4	50%	benign(0.256)	tolerated(0.07)	neutral(0.346)	NULL
TMX3	54495	genome.wustl.edu	37	18	66369004	66369004	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_019022.3	-1	validated	p.R97*	1.000	249	0%	284	38.7%	1	0%	-	-	-	superfamily_Thioredoxin-like,HMMPfam_Thioredoxin
CCDC102B	79839	genome.wustl.edu	37	18	66678261	66678261	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001093729.1	+1	validated	p.D452N	0.596	256	0%	311	46.9%	0	-	possibly_damaging(0.68)	deleterious(0)	deleterious(0.687)	NULL
TIMM21	29090	genome.wustl.edu	37	18	71816059	71816059	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014177.2	+1	validated	p.L6I	0.003	82	0%	102	57.8%	29	41.3%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
ZNF407	55628	genome.wustl.edu	37	18	72345678	72345678	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017757.2	+1	reviewed	p.K901N	1.000	87	0%	131	27.5%	7	42.8%	probably_damaging(0.999)	tolerated(0.17)	deleterious(0.549)	HMMSmart_SM00451,HMMSmart_SM00355,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
ZNF407	55628	genome.wustl.edu	37	18	72346635	72346635	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017757.2	+1	reviewed	p.S1220	0.002	53	0%	81	38.3%	1	0%	-	-	-	NULL
TSHZ1	10194	genome.wustl.edu	37	18	72999405	72999405	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005786.4	+1	reviewed	p.P636	0.050	72	1.4%	92	53.3%	30	40%	-	-	-	NULL
TSHZ1	10194	genome.wustl.edu	37	18	73000080	73000080	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005786.4	+1	reviewed	p.S861	1.000	39	0%	70	47.1%	77	48%	-	-	-	HMMPfam_Homeobox,HMMSmart_SM00389
SALL3	27164	genome.wustl.edu	37	18	76756894	76756894	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_171999.2	+1	validated	p.H1159Y	1.000	10	0%	19	26.3%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
NFATC1	4772	genome.wustl.edu	37	18	77227454	77227454	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_172387.1	+1	reviewed	p.S642Y	0.178	48	0%	80	51.2%	15	60%	possibly_damaging(0.922)	tolerated(0.59)	neutral(0.376)	HMMPfam_TIG,HMMSmart_SM00429,superfamily_E set domains
KCNG2	26251	genome.wustl.edu	37	18	77659108	77659108	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012283.1	+1	reviewed	p.F231	0.978	25	0%	42	52.4%	2	100%	-	-	-	HMMPfam_Ion_trans,superfamily_SSF81324
PARD6G	84552	genome.wustl.edu	37	18	78005221	78005221	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032510.3	-1	validated	p.S4I	1.000	25	0%	32	68.8%	5	40%	benign(0.081)	tolerated(0.06)	neutral(0.329)	NULL
PPAP2C	8612	genome.wustl.edu	37	19	291319	291319	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003712.2	-1	reviewed	p.V6	0.998	11	0%	13	46.2%	548	8%	-	-	-	superfamily_Acid phosphatase/Vanadium-dependent haloperoxidase
SHC2	25759	genome.wustl.edu	37	19	436223	436223	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012435.2	-1	validated	p.E299K	1.000	17	0%	36	58.3%	130	45.3%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_PID,HMMSmart_PTB,superfamily_SSF50729
POLRMT	5442	genome.wustl.edu	37	19	619101	619101	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005035.3	-1	reviewed	p.T1055S	1.000	34	0%	36	44.4%	64	50%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_RNA_pol,superfamily_SSF56672
PALM	5064	genome.wustl.edu	37	19	746350	746350	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002579.2	+1	reviewed	p.E234K	0.997	19	0%	42	40.5%	80	38.7%	benign(0.392)	deleterious(0.01)	deleterious(0.531)	HMMPfam_Paralemmin
PTBP1	5725	genome.wustl.edu	37	19	804915	804915	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002819.4	+1	reviewed	p.P231	0.634	46	0%	88	39.8%	796	46.1%	-	-	-	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928
LPPR3	79948	genome.wustl.edu	37	19	815061	815061	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024888.1	-1	provisional	p.C142R	1.000	75	0%	110	19.1%	26	19.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PAP2,HMMSmart_acidPPc,superfamily_AcPase_VanPerase
MED16	10025	genome.wustl.edu	37	19	885852	885852	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005481.2	-1	validated	p.R266H	1.000	63	0%	84	46.4%	376	45.4%	unknown(0)	tolerated(0.09)	-	superfamily_WD40 repeat-like
GRIN3B	116444	genome.wustl.edu	37	19	1008189	1008189	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_138690.1	+1	provisional	p.E789K	1.000	23	0%	45	53.3%	3	66.6%	probably_damaging(0.998)	tolerated(0.26)	deleterious(0.508)	HMMPfam_Lig_chan,HMMSmart_PBPe,superfamily_SSF53850
ABCA7	10347	genome.wustl.edu	37	19	1043738	1043738	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_019112.3	+1	reviewed	p.F315	0.874	80	1.3%	99	47.5%	3	33.3%	-	-	-	NULL
ABCA7	10347	genome.wustl.edu	37	19	1059028	1059028	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_019112.3	+1	reviewed	p.R1803C	0.860	120	0%	134	42.5%	16	50%	probably_damaging(0.996)	deleterious(0.03)	deleterious(0.826)	superfamily_P-loop containing nucleoside triphosphate hydrolases
SBNO2	22904	genome.wustl.edu	37	19	1122524	1122524	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014963.2	-1	validated	p.A316	0.923	14	0.000	6	0.667	148	46.6%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
CIRBP	1153	genome.wustl.edu	37	19	1272472	1272472	+	RNA	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NR_023312.1	+1	validated	NULL	1.000	198	0%	316	42.4%	455	52.3%	-	-	-	-
AP3D1	8943	genome.wustl.edu	37	19	2123376	2123376	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003938.5	-1	validated	p.I312	0.994	140	0%	206	44.2%	65	50.7%	-	-	-	HMMPfam_Adaptin_N,superfamily_ARM repeat
SF3A2	8175	genome.wustl.edu	37	19	2244554	2244554	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007165.4	+1	reviewed	p.F46L	0.966	134	0%	189	39.7%	147	41.4%	benign(0.213)	tolerated(0.21)	neutral(0.065)	NULL
ZNF57	126295	genome.wustl.edu	37	19	2916106	2916106	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_173480.2	+1	validated	p.S54*	0.000	489	0%	614	45.8%	1	100%	-	-	-	HMMSmart_SM00349
ZNF77	58492	genome.wustl.edu	37	19	2933631	2933631	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021217.2	-1	validated	p.G498	0.747	204	0%	283	38.2%	13	46.1%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
PIP5K1C	23396	genome.wustl.edu	37	19	3664858	3664858	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012398.1	-1	reviewed	p.R61*	1.000	30	0%	47	36.2%	80	40%	-	-	-	NULL
EEF2	1938	genome.wustl.edu	37	19	3979984	3979984	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001961.3	-1	reviewed	p.D476V	1.000	26	0%	48	47.9%	4157	42.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_GTP_EFTU_D2,superfamily_Translation proteins
ANKRD24	170961	genome.wustl.edu	37	19	4216752	4216752	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_133475.1	+1	provisional	p.A532V	0.000	43	0%	52	46.2%	3	33.3%	benign(0)	tolerated(1)	-	NULL
ANKRD24	170961	genome.wustl.edu	37	19	4216949	4216949	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_133475.1	+1	provisional	p.E598*	0.001	68	0%	123	40.7%	3	0%	-	-	-	NULL
FSD1	79187	genome.wustl.edu	37	19	4318430	4318430	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024333.2	+1	reviewed	p.K296T	1.000	76	0%	105	41%	1	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
HDGFRP2	84717	genome.wustl.edu	37	19	4475527	4475527	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001001520.1	+1	reviewed	p.E79K	1.000	103	0%	106	35.8%	58	32.7%	probably_damaging(0.971)	deleterious(0)	deleterious(0.857)	superfamily_Tudor/PWWP/MBT
TICAM1	148022	genome.wustl.edu	37	19	4816574	4816574	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_182919.2	-1	validated	p.R606*	0.000	24	0%	27	63%	8	12.5%	-	-	-	NULL
PTPRS	5802	genome.wustl.edu	37	19	5256125	5256125	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002850.3	-1	reviewed	p.R238*	1.000	247	0%	310	38.1%	0	-	-	-	-	NULL
SAFB2	9667	genome.wustl.edu	37	19	5604608	5604608	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014649.2	-1	validated	p.E515D	0.976	247	0%	258	26.7%	8	25%	benign(0.034)	tolerated(0.42)	neutral(0.016)	superfamily_SSF54928
LONP1	9361	genome.wustl.edu	37	19	5714271	5714271	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004793.2	-1	reviewed	p.K147N	1.000	288	0.3%	314	41.7%	15	20%	benign(0.11)	tolerated(0.08)	neutral(0.308)	HMMPfam_LON,HMMSmart_LON
FUT3	2525	genome.wustl.edu	37	19	5844738	5844738	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000149.3	-1	reviewed	p.R38Q	0.000	25	0%	31	41.9%	5	20%	benign(0.014)	tolerated(0.42)	neutral(0.015)	HMMPfam_Glyco_transf_10
RFX2	5990	genome.wustl.edu	37	19	5995648	5995648	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000635.3	-1	reviewed	p.D674N	1.000	63	0%	81	42%	7	14.2%	benign(0.037)	tolerated(0.3)	neutral(0.030)	NULL
ACSBG2	81616	genome.wustl.edu	37	19	6147577	6147577	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_030924.3	+1	validated	p.R63Q	0.001	149	0%	210	13.3%	0	-	possibly_damaging(0.687)	tolerated(0.1)	deleterious(0.532)	superfamily_SSF56801
MLLT1	4298	genome.wustl.edu	37	19	6213122	6213122	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005934.3	-1	validated	p.F537	0.986	110	0%	180	51.7%	150	37.3%	-	-	-	NULL
ACER1	125981	genome.wustl.edu	37	19	6309747	6309747	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_133492.2	-1	validated	p.A150V	0.846	111	0%	145	46.9%	0	-	benign(0.327)	deleterious(0.01)	deleterious(0.508)	HMMPfam_aPHC
GTF2F1	2962	genome.wustl.edu	37	19	6391971	6391971	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002096.2	-1	validated	p.K25T	0.879	476	0%	579	43.5%	47	46.8%	possibly_damaging(0.717)	deleterious(0.01)	deleterious(0.665)	HMMPfam_TFIIF_alpha,superfamily_Rap30/74 interaction domains
KHSRP	8570	genome.wustl.edu	37	19	6422415	6422415	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003685.2	-1	validated	p.T94	0.011	209	0%	255	43.1%	54	44.4%	-	-	-	NULL
SLC25A41	284427	genome.wustl.edu	37	19	6433623	6433623	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_173637.3	-1	validated	p.K28E	0.001	109	0%	113	39.8%	0	-	benign(0)	deleterious(0)	neutral(0.445)	NULL
TNFSF14	8740	genome.wustl.edu	37	19	6664984	6664984	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003807.3	-1	reviewed	p.R226*	0.010	72	0%	124	38.7%	0	-	-	-	-	HMMPfam_TNF,HMMSmart_SM00207,superfamily_TNF-like
SH2D3A	10045	genome.wustl.edu	37	19	6760665	6760665	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005490.2	-1	validated	p.R135W	0.000	73	0%	73	53.4%	13	7.6%	probably_damaging(0.982)	deleterious(0.04)	deleterious(0.775)	superfamily_SH2 domain
VAV1	7409	genome.wustl.edu	37	19	6820791	6820791	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005428.2	+1	reviewed	p.E95K	1.000	158	0.6%	207	21.3%	4	0%	benign(0.334)	deleterious(0.01)	deleterious(0.511)	HMMPfam_CH,HMMSmart_CH,superfamily_Calponin-homology
EMR1	2015	genome.wustl.edu	37	19	6924789	6924789	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001974.3	+1	reviewed	p.R631Q	0.022	199	0%	222	45.5%	1	0%	benign(0.149)	tolerated(1)	neutral(0.013)	HMMPfam_7tm_2,superfamily_Family A G protein-coupled receptor-like
ZNF557	79230	genome.wustl.edu	37	19	7083076	7083076	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001044387.1	+1	validated	p.E205G	1.000	192	0.5%	222	44.6%	4	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF57667
PNPLA6	10908	genome.wustl.edu	37	19	7620239	7620239	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006702.4	+1	reviewed	p.G936	0.978	14	0%	20	50%	32	28.1%	-	-	-	PatternScan_UPF0028,HMMPfam_Patatin,superfamily_Acyl_Trfase/lysoPlipase
XAB2	56949	genome.wustl.edu	37	19	7691052	7691052	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020196.2	-1	validated	p.F209	0.994	31	0%	42	45.2%	76	31.5%	-	-	-	superfamily_SSF48452
XAB2	56949	genome.wustl.edu	37	19	7693137	7693137	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020196.2	-1	validated	p.F33L	1.000	110	0%	107	46.7%	30	43.3%	benign(0.008)	tolerated(0.58)	neutral(0.005)	NULL
CD209	30835	genome.wustl.edu	37	19	7809048	7809048	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021155.3	-1	reviewed	p.D320Y	0.060	344	0%	392	37.2%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like
EVI5L	115704	genome.wustl.edu	37	19	7912759	7912759	+	Silent	SNP	C	C	T	rs193137808	by1000genomes	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_145245.3	+1	validated	p.I93	0.998	38	0%	41	39%	21	42.8%	-	-	-	superfamily_RabGAP_TBC
ELAVL1	1994	genome.wustl.edu	37	19	8046018	8046018	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001419.2	-1	reviewed	p.E75D	1.000	187	0%	232	44.8%	328	45.1%	benign(0.008)	tolerated(0.1)	neutral(0.286)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
FBN3	84467	genome.wustl.edu	37	19	8136985	8136985	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032447.3	-1	reviewed	p.N2679D	1.000	60	0%	77	32.5%	5	60%	benign(0.103)	deleterious(0.03)	neutral(0.372)	NULL
FBN3	84467	genome.wustl.edu	37	19	8171112	8171112	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032447.3	-1	reviewed	p.D1565N	1.000	60	0%	90	34.4%	0	-	benign(0.251)	tolerated(0.24)	neutral(0.063)	HMMSmart_SM00179,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin
PRAM1	84106	genome.wustl.edu	37	19	8563567	8563567	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032152.3	-1	reviewed	p.F375	0.000	11	0%	20	35%	0	-	-	-	-	NULL
ZNF558	148156	genome.wustl.edu	37	19	8922651	8922651	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_144693.1	-1	provisional	p.R172I	1.000	86	0%	125	32%	4	50%	possibly_damaging(0.879)	deleterious(0)	deleterious(0.787)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
MUC16	94025	genome.wustl.edu	37	19	9058260	9058260	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024690.2	-1	validated	p.S9729Y	0.003	190	0%	241	39.4%	25	48%	unknown(0)	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9058858	9058858	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024690.2	-1	validated	p.E9530*	0.000	290	0%	413	47%	14	42.8%	-	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9067616	9067616	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024690.2	-1	validated	p.V6610	0.000	250	0%	279	15.4%	22	22.7%	-	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9075063	9075063	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024690.2	-1	validated	p.R4128I	0.001	208	0%	261	49.4%	14	78.5%	unknown(0)	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9084554	9084554	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024690.2	-1	validated	p.E2421*	0.193	248	0%	306	14.4%	4	0%	-	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9088390	9088390	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024690.2	-1	validated	p.D1142G	0.003	281	0%	402	42.8%	12	33.3%	unknown(0)	-	-	NULL
LOC100132973	100132973	genome.wustl.edu	37	19	9293044	9293044	+	Nonstop_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_001726567.1	-1	model	p.*116E	1.000	27	0%	56	48.2%	0	-	-	-	-	NULL
OR7D4	125958	genome.wustl.edu	37	19	9324794	9324794	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001005191.1	-1	provisional	p.T240	1.000	65	0%	111	51.4%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR7D4	125958	genome.wustl.edu	37	19	9325035	9325035	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001005191.1	-1	provisional	p.I160N	0.001	153	0%	210	49%	0	-	benign(0.172)	tolerated(0.14)	neutral(0.265)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ZNF699	374879	genome.wustl.edu	37	19	9406545	9406545	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_198535.1	-1	provisional	p.F512C	0.821	287	0%	356	35.4%	3	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF699	374879	genome.wustl.edu	37	19	9407533	9407533	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_198535.1	-1	provisional	p.L183I	0.000	96	0%	93	36.6%	0	-	possibly_damaging(0.944)	tolerated(0.07)	deleterious(0.708)	NULL
ZNF559	84527	genome.wustl.edu	37	19	9452785	9452785	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032497.1	+1	provisional	p.E220K	0.055	143	0%	158	48.7%	4	50%	benign(0)	tolerated(1)	-	NULL
ZNF266	10781	genome.wustl.edu	37	19	9524126	9524126	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006631.2	-1	validated	p.Y492C	0.000	118	0%	97	46.4%	18	38.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF266	10781	genome.wustl.edu	37	19	9524486	9524486	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006631.2	-1	validated	p.R372Q	0.001	168	0%	208	40.4%	15	66.6%	probably_damaging(0.96)	deleterious(0.01)	deleterious(0.808)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF560	147741	genome.wustl.edu	37	19	9581127	9581127	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152476.2	-1	validated	p.A130D	0.093	228	0%	301	43.5%	0	-	benign(0.004)	tolerated(0.21)	neutral(0.044)	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
LOC646048	646048	genome.wustl.edu	37	19	9628951	9628951	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_002343637.1	+1	model	p.G231	0.997	12	0%	11	36.4%	0	-	-	-	-	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
LOC646048	646048	genome.wustl.edu	37	19	9629000	9629000	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_002343637.1	+1	model	p.Q248K	1.000	15	0%	19	36.8%	0	-	-	-	-	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
ZNF426	79088	genome.wustl.edu	37	19	9639319	9639319	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024106.1	-1	provisional	p.R468*	0.000	192	0%	245	45.7%	4	25%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF426	79088	genome.wustl.edu	37	19	9639402	9639402	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024106.1	-1	provisional	p.R440Q	0.917	186	0%	212	46.7%	3	33.3%	probably_damaging(1)	tolerated(0.11)	deleterious(0.772)	HMMSmart_SM00614,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF426	79088	genome.wustl.edu	37	19	9639570	9639570	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024106.1	-1	provisional	p.R384I	0.040	127	0%	162	16%	8	25%	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF121	7675	genome.wustl.edu	37	19	9676973	9676973	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001008727.2	-1	validated	p.K272	0.000	164	0.6%	193	40.9%	3	66.6%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF562	54811	genome.wustl.edu	37	19	9763731	9763731	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001130031.1	-1	validated	p.R392K	0.020	258	0%	308	46.8%	14	42.8%	possibly_damaging(0.77)	tolerated(0.11)	deleterious(0.557)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
COL5A3	50509	genome.wustl.edu	37	19	10084278	10084278	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015719.3	-1	reviewed	p.D1212Y	0.999	72	0%	87	44.8%	3	0%	unknown(0)	deleterious(0.03)	-	HMMPfam_Collagen
COL5A3	50509	genome.wustl.edu	37	19	10089572	10089572	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015719.3	-1	reviewed	p.D987N	0.406	23	0%	17	64.7%	0	-	probably_damaging(0.965)	tolerated(0.51)	neutral(0.416)	HMMPfam_Collagen
COL5A3	50509	genome.wustl.edu	37	19	10089623	10089623	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015719.3	-1	reviewed	p.E970*	1.000	30	0%	35	37.1%	0	-	-	-	-	HMMPfam_Collagen
COL5A3	50509	genome.wustl.edu	37	19	10106796	10106796	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015719.3	-1	reviewed	e15-1	1.000	258	0%	303	29%	0	-	-	-	-	-
PPAN-P2RY11	692312	genome.wustl.edu	37	19	10220911	10220911	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001040664.1	+1	validated	p.R271W	1.000	14	0%	26	38.5%	101	47.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Brix
DNMT1	1786	genome.wustl.edu	37	19	10265055	10265055	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001130823.1	-1	reviewed	p.D645N	1.000	277	0%	431	46.6%	58	34.4%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	NULL
DNMT1	1786	genome.wustl.edu	37	19	10291528	10291528	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001130823.1	-1	reviewed	p.E51K	1.000	414	0%	531	18.5%	3	33.3%	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	HMMPfam_DMAP_binding
CDC37	11140	genome.wustl.edu	37	19	10506144	10506144	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007065.3	-1	reviewed	p.V152M	1.000	477	0%	653	44.9%	731	41%	probably_damaging(0.994)	tolerated(0.08)	deleterious(0.752)	HMMPfam_CDC37_M,superfamily_Hsp90 co-chaperone CDC37
KRI1	65095	genome.wustl.edu	37	19	10670507	10670507	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_023008.3	-1	validated	p.F308	0.921	94	0%	168	36.9%	26	42.3%	-	-	-	NULL
DNM2	1785	genome.wustl.edu	37	19	10930742	10930742	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001005360.1	+1	reviewed	p.F586	0.998	110	0%	146	20.5%	397	20.4%	-	-	-	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
LOC100287659	100287659	genome.wustl.edu	37	19	11145796	11145796	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_002343639.1	-1	model	p.L221F	1.000	25	0%	26	46.2%	437	47.5%	-	-	-	NULL
DOCK6	57572	genome.wustl.edu	37	19	11328011	11328011	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020812.2	-1	validated	p.E1203K	0.978	65	0%	82	52.4%	51	31.3%	benign(0.003)	tolerated(0.33)	neutral(0.024)	NULL
TMEM205	374882	genome.wustl.edu	37	19	11456064	11456064	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001145416.1	-1	validated	p.R43Q	0.739	62	0%	70	44.3%	844	46.3%	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	NULL
SWSAP1	126074	genome.wustl.edu	37	19	11486190	11486190	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_175871.3	+1	validated	p.K63T	1.000	108	0%	100	34%	10	40%	probably_damaging(0.958)	deleterious(0.04)	deleterious(0.750)	superfamily_SSF52540
ZNF627	199692	genome.wustl.edu	37	19	11728448	11728448	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_145295.3	+1	validated	p.S377L	0.000	112	0%	123	36.6%	1	100%	possibly_damaging(0.61)	tolerated(0.07)	deleterious(0.530)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF823	55552	genome.wustl.edu	37	19	11833307	11833307	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001080493.2	-1	validated	p.R348*	0.000	308	0%	355	38.9%	12	41.6%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF823	55552	genome.wustl.edu	37	19	11833894	11833894	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001080493.2	-1	validated	p.Q152R	0.006	479	0%	625	45.1%	2	100%	benign(0.002)	tolerated(0.81)	neutral(0.001)	superfamily_SSF57667
ZNF440	126070	genome.wustl.edu	37	19	11943415	11943415	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152357.2	+1	validated	p.R475I	0.002	179	0%	202	45.5%	3	66.6%	benign(0.024)	tolerated(0.49)	neutral(0.011)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF69	7620	genome.wustl.edu	37	19	12016843	12016843	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000429654	+1	known	p.R544I	0.395	101	0%	141	44%	6	66.6%	benign(0.061)	tolerated(0.37)	neutral(0.023)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF700	90592	genome.wustl.edu	37	19	12059798	12059798	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_144566.1	+1	provisional	p.S320Y	0.019	141	0%	215	46.5%	3	100%	benign(0)	tolerated(1)	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF700	90592	genome.wustl.edu	37	19	12060661	12060661	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_144566.1	+1	provisional	p.R608*	0.002	139	0%	205	50.2%	17	29.4%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF763	284390	genome.wustl.edu	37	19	12087920	12087920	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001012753.1	+1	validated	p.S27L	0.000	462	0.2%	536	42.2%	0	-	benign(0.144)	deleterious(0)	neutral(0.457)	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
ZNF763	284390	genome.wustl.edu	37	19	12089301	12089301	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001012753.1	+1	validated	p.R191*	0.000	235	0%	336	42.3%	6	0%	-	-	-	HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF433	163059	genome.wustl.edu	37	19	12126777	12126777	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001080411.1	-1	provisional	p.R302I	0.654	183	0%	192	44.8%	3	0%	probably_damaging(0.998)	tolerated(0.14)	deleterious(0.724)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF878	729747	genome.wustl.edu	37	19	12155812	12155812	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001080404.1	-1	inferred	p.R182I	0.779	272	0%	320	42.8%	0	-	probably_damaging(0.992)	tolerated(0.13)	deleterious(0.700)	superfamily_C2H2 and C2HC zinc fingers
ZNF844	284391	genome.wustl.edu	37	19	12184898	12184898	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001136501.1	+1	provisional	p.S19Y	0.093	300	0%	353	43.9%	2	50%	benign(0.255)	deleterious(0)	deleterious(0.471)	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
ZNF844	284391	genome.wustl.edu	37	19	12187409	12187409	+	Missense_Mutation	SNP	G	G	A	rs185145992	by1000genomes	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001136501.1	+1	provisional	p.D492N	0.000	220	0%	258	17.4%	6	16.6%	possibly_damaging(0.86)	tolerated(0.5)	neutral(0.343)	NULL
ENSG00000188474	0	genome.wustl.edu	37	19	12223747	12223747	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000339302	+1	known	p.R462Q	0.000	43	0%	45	13.3%	5	20%	benign(0.26)	tolerated(0.69)	neutral(0.029)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF625	90589	genome.wustl.edu	37	19	12256284	12256284	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_145233.2	-1	provisional	p.S250L	0.002	185	0%	252	42.5%	9	66.6%	possibly_damaging(0.731)	deleterious(0.01)	deleterious(0.673)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF136	7695	genome.wustl.edu	37	19	12297659	12297659	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003437.2	+1	validated	p.R156*	0.746	151	0%	220	40%	11	63.6%	-	-	-	HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF136	7695	genome.wustl.edu	37	19	12298632	12298632	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003437.2	+1	validated	p.R480Q	0.006	188	0%	224	40.2%	10	70%	benign(0.017)	tolerated(0.53)	neutral(0.008)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF442	79973	genome.wustl.edu	37	19	12460708	12460708	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_030824.2	-1	validated	p.R564I	0.001	212	0%	309	24.6%	0	-	benign(0.009)	deleterious(0.04)	neutral(0.349)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF490	57474	genome.wustl.edu	37	19	12691328	12691328	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020714.2	-1	validated	p.E521K	0.001	123	0%	148	37.8%	2	0%	benign(0.202)	tolerated(0.49)	neutral(0.030)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
WDR83	84292	genome.wustl.edu	37	19	12780838	12780838	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001099737.2	+1	reviewed	p.L51	1.000	42	0%	39	23.1%	51	21.5%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
DHPS	1725	genome.wustl.edu	37	19	12790661	12790661	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001930.2	-1	reviewed	p.E150K	1.000	110	0%	145	21.4%	174	24.1%	benign(0)	tolerated(0.08)	neutral(0.300)	HMMPfam_DS,superfamily_DHS-like NAD/FAD-binding domain
DHPS	1725	genome.wustl.edu	37	19	12791091	12791091	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001930.2	-1	reviewed	p.D86N	0.921	255	0%	300	52.7%	237	50.2%	benign(0)	tolerated(0.12)	neutral(0.261)	HMMPfam_DS,superfamily_DHS-like NAD/FAD-binding domain
TNPO2	30000	genome.wustl.edu	37	19	12826108	12826108	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001136196.1	-1	validated	p.F199L	1.000	51	2%	66	12.1%	54	3.7%	benign(0.331)	deleterious(0.04)	neutral(0.453)	superfamily_ARM repeat
ASNA1	439	genome.wustl.edu	37	19	12849405	12849405	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004317.2	+1	validated	p.D81G	1.000	182	0%	243	42%	219	39.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ArsA_ATPase,superfamily_P-loop containing nucleoside triphosphate hydrolases
MAST1	22983	genome.wustl.edu	37	19	12958720	12958720	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014975.2	+1	validated	p.S208N	1.000	31	0%	39	59%	0	-	benign(0)	tolerated(0.46)	neutral(0.012)	HMMPfam_DUF1908
MAST1	22983	genome.wustl.edu	37	19	12963197	12963197	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014975.2	+1	validated	p.D355	0.756	59	0%	54	44.4%	0	-	-	-	-	superfamily_Kinase_like
GCDH	2639	genome.wustl.edu	37	19	13002302	13002302	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000159.2	+1	reviewed	p.E31D	0.291	128	0%	171	30.4%	18	38.8%	benign(0)	tolerated(0.57)	neutral(0.006)	NULL
CALR	811	genome.wustl.edu	37	19	13050431	13050431	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004343.3	+1	reviewed	p.Y128C	1.000	142	0%	237	13.1%	5039	15.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Calreticulin,superfamily_Concanavalin A-like lectins/glucanases
NFIX	4784	genome.wustl.edu	37	19	13184742	13184742	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002501.2	+1	validated	p.G240	0.998	214	0%	273	20.1%	44	9%	unknown(0)	deleterious(0.02)	-	HMMPfam_CTF_NFI
CACNA1A	773	genome.wustl.edu	37	19	13370440	13370440	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001127222.1	-1	reviewed	p.Y1442	0.989	128	0%	184	46.2%	1	0%	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CACNA1A	773	genome.wustl.edu	37	19	13470595	13470595	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001127222.1	-1	reviewed	p.S268Y	1.000	108	0%	134	41%	0	-	possibly_damaging(0.951)	tolerated(0.09)	deleterious(0.691)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CACNA1A	773	genome.wustl.edu	37	19	13482541	13482541	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001127222.1	-1	reviewed	p.R198*	0.972	41	0%	43	18.6%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
PRKACA	5566	genome.wustl.edu	37	19	14208251	14208251	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002730.3	-1	reviewed	p.I229	1.000	81	0%	69	15.9%	39	17.9%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
CD97	976	genome.wustl.edu	37	19	14516666	14516666	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_078481.2	+1	reviewed	p.R579H	1.000	36	0%	45	44.4%	125	21.6%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	HMMPfam_7tm_2,superfamily_Family A G protein-coupled receptor-like
DDX39A	10212	genome.wustl.edu	37	19	14523405	14523405	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005804.2	-1	reviewed	p.F98	0.989	27	0%	19	26.3%	174	37.9%	-	-	-	HMMPfam_DEAD,HMMSmart_DEXDc,superfamily_SSF52540
ZNF333	84449	genome.wustl.edu	37	19	14827826	14827826	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032433.2	+1	validated	p.N250H	0.000	119	0%	200	43%	3	66.6%	benign(0.063)	tolerated(0.15)	neutral(0.245)	HMMSmart_KRAB,superfamily_Krueppel-associated_box
OR7A17	26333	genome.wustl.edu	37	19	14991408	14991408	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_030901.1	-1	provisional	p.T254A	0.003	192	0%	260	46.9%	0	-	benign(0.03)	tolerated(0.07)	neutral(0.321)	HMMPfam_7tm_1,superfamily_SSF81321
OR7C2	26658	genome.wustl.edu	37	19	15052819	15052819	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012377.1	+1	provisional	p.E173D	0.000	408	0%	522	47.7%	0	-	benign(0.005)	tolerated(0.11)	neutral(0.272)	HMMPfam_7tm_1,superfamily_SSF81321
AKAP8	10270	genome.wustl.edu	37	19	15484026	15484026	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005858.2	-1	reviewed	p.F166S	0.983	15	0%	45	46.7%	7	42.8%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
WIZ	58525	genome.wustl.edu	37	19	15538292	15538292	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021241.2	-1	validated	p.F194L	1.000	12	0%	10	40%	43	39.5%	probably_damaging(0.959)	tolerated(0.18)	neutral(0.459)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2
WIZ	58525	genome.wustl.edu	37	19	15547730	15547730	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021241.2	-1	validated	p.R139Q	0.190	54	0%	64	43.8%	0	-	benign(0.263)	tolerated(0.06)	neutral(0.350)	NULL
PGLYRP2	114770	genome.wustl.edu	37	19	15580282	15580282	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000292609	-1	known	p.F601C	0.000	128	0%	167	40.7%	0	-	benign(0.362)	-	-	NULL
LOC388514	388514	genome.wustl.edu	37	19	15871154	15871154	+	RNA	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XR_017598.3	-1	model	NULL	0.025	17	0%	30	33.3%	0	-	-	-	-	-
CYP4F11	57834	genome.wustl.edu	37	19	16032912	16032912	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001128932.1	-1	reviewed	p.Y350	1.000	285	0%	305	38%	10	30%	-	-	-	HMMPfam_p450,superfamily_Cytochrome P450
HSH2D	84941	genome.wustl.edu	37	19	16268028	16268028	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000253680	+1	known	p.P161	0.000	122	0%	102	40.2%	3	33.3%	-	-	-	NULL
EPS15L1	58513	genome.wustl.edu	37	19	16504771	16504771	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021235.1	-1	provisional	p.T653A	0.009	226	0%	292	40.8%	13	30.7%	benign(0)	tolerated(0.92)	-	NULL
EPS15L1	58513	genome.wustl.edu	37	19	16532242	16532242	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021235.1	-1	provisional	p.D280Y	1.000	155	0%	181	43.6%	49	32.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_EH,HMMSmart_EFh,superfamily_SSF47473
CALR3	125972	genome.wustl.edu	37	19	16606597	16606597	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_145046.3	-1	validated	p.S53L	0.999	242	0%	286	48.3%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_Calreticulin,superfamily_ConA_like_lec_gl
SLC35E1	79939	genome.wustl.edu	37	19	16666033	16666033	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024881.4	-1	validated	p.R311H	1.000	101	0%	139	10.1%	88	12.5%	possibly_damaging(0.789)	tolerated(0.08)	deleterious(0.596)	HMMPfam_TPT,superfamily_Multidrug resistance efflux transporter EmrE
MED26	9441	genome.wustl.edu	37	19	16688149	16688149	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004831.3	-1	validated	p.K164N	0.993	5	0.000	13	0.308	7	57.1%	probably_damaging(0.991)	tolerated(0.06)	deleterious(0.766)	NULL
NWD1	284434	genome.wustl.edu	37	19	16860198	16860198	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001007525.2	+1	validated	p.D114N	0.995	29	0%	47	48.9%	5	100%	possibly_damaging(0.896)	tolerated(0.18)	neutral(0.409)	NULL
NWD1	284434	genome.wustl.edu	37	19	16910892	16910892	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001007525.2	+1	validated	p.A1084T	0.148	58	0%	74	43.2%	1	100%	benign(0.003)	deleterious(0.01)	neutral(0.406)	superfamily_WD40 repeat-like
CPAMD8	27151	genome.wustl.edu	37	19	17014557	17014557	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000443236	-1	known	p.P1512H	0.993	228	0%	284	40.5%	29	62%	-	-	-	NULL
ANKLE1	126549	genome.wustl.edu	37	19	17394236	17394236	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152363.4	+1	validated	p.F221	0.002	31	0%	42	57.1%	0	-	-	-	-	NULL
FAM129C	199786	genome.wustl.edu	37	19	17657509	17657509	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_173544.4	+1	validated	p.F554	0.000	48	0%	47	40.4%	0	-	-	-	-	NULL
UNC13A	23025	genome.wustl.edu	37	19	17738359	17738359	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001080421.2	-1	validated	p.L1381	1.000	41	0%	42	16.7%	0	-	-	-	-	HMMPfam_DUF1041
MAP1S	55201	genome.wustl.edu	37	19	17836865	17836865	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018174.4	+1	validated	p.F224	0.996	23	0%	32	43.8%	15	60%	-	-	-	NULL
MAP1S	55201	genome.wustl.edu	37	19	17838758	17838758	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018174.4	+1	validated	p.Q855	0.000	10	0%	14	28.6%	60	26.6%	-	-	-	NULL
JAK3	3718	genome.wustl.edu	37	19	17946747	17946747	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000215.3	-1	reviewed	p.A634T	1.000	61	0%	88	40.9%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
RPL18A	6142	genome.wustl.edu	37	19	17973794	17973794	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000980.2	+1	reviewed	p.I132	0.941	35	0%	29	37.9%	816	44.7%	-	-	-	HMMPfam_Ribosomal_L18ae
IL12RB1	3594	genome.wustl.edu	37	19	18188466	18188466	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005535.1	-1	reviewed	e5-1	0.950	57	0%	85	40%	1	0%	-	-	-	-
MAST3	23031	genome.wustl.edu	37	19	18255824	18255824	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015016.1	+1	validated	p.G913S	0.192	35	0%	57	28.1%	6	50%	benign(0.001)	tolerated(0.46)	neutral(0.012)	NULL
MPV17L2	84769	genome.wustl.edu	37	19	18305800	18305800	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000445735	+1	known	p.R67C	1.000	81	0%	119	46.2%	93	38.7%	-	-	-	NULL
KIAA1683	80726	genome.wustl.edu	37	19	18377003	18377003	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001145304.1	-1	validated	p.A449	0.000	188	0%	246	47.2%	1	0%	-	-	-	NULL
ISYNA1	51477	genome.wustl.edu	37	19	18546720	18546720	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016368.4	-1	validated	p.I329	1.000	82	0%	100	48%	344	42.4%	-	-	-	HMMPfam_NAD_binding_5,HMMPfam_Inos-1-P_synth,superfamily_NAD(P)-binding Rossmann-fold domains,superfamily_Glyceraldehyde-3-phosphate dehydrogenase-like C-terminal domain
SUGP2	10147	genome.wustl.edu	37	19	19135736	19135736	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001017392.3	-1	reviewed	p.S474Y	0.983	129	0%	162	13%	9	0%	probably_damaging(0.998)	tolerated(0.11)	deleterious(0.746)	NULL
SUGP1	57794	genome.wustl.edu	37	19	19389559	19389559	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_172231.2	-1	validated	p.I525	0.971	83	0%	81	34.6%	61	37.7%	-	-	-	NULL
TSSK6	83983	genome.wustl.edu	37	19	19626000	19626000	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032037.2	-1	validated	p.I79	1.000	17	0%	27	37%	3	66.6%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
ATP13A1	57130	genome.wustl.edu	37	19	19758262	19758262	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020410.2	-1	validated	p.A957T	0.998	102	0%	107	46.7%	401	41.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ATP13A1	57130	genome.wustl.edu	37	19	19766983	19766983	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020410.2	-1	validated	p.E365K	1.000	107	0%	100	52%	118	46.6%	benign(0.201)	tolerated(0.39)	neutral(0.035)	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A
ZNF682	91120	genome.wustl.edu	37	19	20117852	20117852	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033196.2	-1	validated	p.V153	0.000	203	0%	242	45.5%	0	-	-	-	-	NULL
ZNF90	7643	genome.wustl.edu	37	19	20216110	20216110	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007138.1	+1	validated	p.I71V	0.001	454	0%	626	10.7%	0	-	benign(0)	tolerated(1)	-	NULL
ZNF85	7639	genome.wustl.edu	37	19	21117853	21117853	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003429.3	+1	validated	p.V77I	0.147	204	0%	258	50%	1	0%	benign(0.346)	tolerated(0.47)	neutral(0.120)	NULL
ZNF85	7639	genome.wustl.edu	37	19	21132466	21132466	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003429.3	+1	validated	p.F382L	0.000	64	0%	75	45.3%	0	-	benign(0)	tolerated(0.61)	neutral(0.004)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF431	170959	genome.wustl.edu	37	19	21349217	21349217	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_133473.2	+1	validated	p.L59*	0.029	389	0%	478	43.3%	0	-	-	-	-	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF493	284443	genome.wustl.edu	37	19	21607155	21607155	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001076678.2	+1	validated	p.R565I	0.937	84	1.2%	89	53.9%	0	-	benign(0.087)	tolerated(0.1)	neutral(0.293)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF429	353088	genome.wustl.edu	37	19	21720273	21720273	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001001415.2	+1	provisional	p.R473I	0.989	77	0%	71	40.8%	4	75%	benign(0.009)	tolerated(0.21)	neutral(0.044)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF43	7594	genome.wustl.edu	37	19	21992174	21992174	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003423.2	-1	validated	p.R222I	0.000	128	0%	176	44.9%	1	0%	benign(0.027)	tolerated(0.26)	neutral(0.036)	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF208	7757	genome.wustl.edu	37	19	22154752	22154752	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007153.3	-1	provisional	p.P900	0.062	263	0.4%	331	44.4%	0	-	-	-	-	superfamily_SSF57667
ZNF208	7757	genome.wustl.edu	37	19	22156779	22156779	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007153.3	-1	provisional	p.F353V	0.000	79	0%	146	48.6%	0	-	possibly_damaging(0.915)	tolerated(0.34)	neutral(0.390)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF676	163223	genome.wustl.edu	37	19	22362861	22362861	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001001411.2	-1	provisional	p.R553I	0.885	65	0%	67	22.4%	0	-	benign(0.176)	tolerated(0.26)	neutral(0.050)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
LOC100287226	100287226	genome.wustl.edu	37	19	22496669	22496669	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_002343636.1	+1	model	p.Q17H	0.000	87	0%	124	44.4%	0	-	possibly_damaging(0.791)	tolerated(0.07)	deleterious(0.615)	superfamily_C2H2 and C2HC zinc fingers
LOC100287226	100287226	genome.wustl.edu	37	19	22497070	22497070	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_002343636.1	+1	model	p.R151I	0.753	30	0%	33	27.3%	0	-	benign(0.017)	tolerated(0.2)	neutral(0.050)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
LOC100287226	100287226	genome.wustl.edu	37	19	22498066	22498066	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_002343636.1	+1	model	p.A483D	0.000	32	0%	50	42%	0	-	possibly_damaging(0.678)	tolerated(0.17)	neutral(0.300)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
LOC100287226	100287226	genome.wustl.edu	37	19	22499286	22499286	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_002343636.1	+1	model	p.E890*	0.000	97	0%	119	48.7%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ENSG00000213974	0	genome.wustl.edu	37	19	22785676	22785676	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000397112	+1	known	p.G151*	1.000	29	0%	34	47.1%	0	-	-	-	-	NULL
ZNF492	57615	genome.wustl.edu	37	19	22847037	22847037	+	Missense_Mutation	SNP	G	G	T	rs186644138	by1000genomes	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020855.2	+1	validated	p.R189I	0.939	245	0%	313	42.5%	0	-	benign(0.001)	tolerated(0.14)	neutral(0.249)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF99	7652	genome.wustl.edu	37	19	22939262	22939262	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001080409.1	-1	provisional	p.K970I	1.000	91	0%	128	18%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_SSF57667
ZNF99	7652	genome.wustl.edu	37	19	22939831	22939831	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001080409.1	-1	provisional	p.E834*	0.940	194	0%	238	45.8%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF99	7652	genome.wustl.edu	37	19	22941379	22941379	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001080409.1	-1	provisional	p.K353N	0.023	209	0%	299	46.8%	0	-	probably_damaging(1)	tolerated(0.11)	deleterious(0.772)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
LOC646864	646864	genome.wustl.edu	37	19	23040607	23040607	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_001726885.1	+1	model	p.R334I	0.995	25	0%	30	40%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
LOC646864	646864	genome.wustl.edu	37	19	23040775	23040775	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_001726885.1	+1	model	p.R390I	0.717	25	0%	32	31.2%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF728	388523	genome.wustl.edu	37	19	23157994	23157994	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_001726961.1	-1	model	p.R669I	0.001	22	0%	32	40.6%	0	-	-	-	-	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF728	388523	genome.wustl.edu	37	19	23159044	23159044	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_001726961.1	-1	model	p.E365D	1.000	58	0%	69	44.9%	0	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
ZNF728	388523	genome.wustl.edu	37	19	23171144	23171144	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_001726961.1	-1	model	p.R38I	0.957	575	0%	652	44.8%	0	-	-	-	-	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF724P	440519	genome.wustl.edu	37	19	23406078	23406078	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000418100	-1	known	p.S323	0.000	32	0%	39	43.6%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF675	171392	genome.wustl.edu	37	19	23836976	23836976	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_138330.2	-1	validated	p.E253D	1.000	154	0%	187	43.9%	2	100%	possibly_damaging(0.773)	tolerated(0.08)	deleterious(0.587)	superfamily_C2H2 and C2HC zinc fingers
URI1	8725	genome.wustl.edu	37	19	30498484	30498484	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003796.2	+1	reviewed	p.E209*	1.000	307	0%	340	37.4%	28	0%	-	-	-	NULL
ZNF536	9745	genome.wustl.edu	37	19	31040009	31040009	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014717.1	+1	provisional	p.L1161	0.962	28	0%	52	44.2%	0	-	-	-	-	NULL
SLC7A9	11136	genome.wustl.edu	37	19	33349411	33349411	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001126335.1	-1	reviewed	p.I304	0.054	136	0%	162	43.2%	0	-	-	-	-	HMMPfam_AA_permease
CEP89	84902	genome.wustl.edu	37	19	33390846	33390846	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032816.3	-1	validated	p.E598K	0.976	340	0%	453	45.5%	5	40%	probably_damaging(0.998)	tolerated(0.64)	deleterious(0.477)	NULL
RHPN2	85415	genome.wustl.edu	37	19	33481449	33481449	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033103.4	-1	reviewed	p.V591M	0.876	84	0%	134	26.9%	119	19.3%	probably_damaging(0.964)	deleterious(0)	deleterious(0.851)	HMMSmart_PDZ,superfamily_PDZ
GPATCH1	55094	genome.wustl.edu	37	19	33587333	33587333	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018025.2	+1	provisional	p.K278T	0.991	147	0%	146	43.8%	1	100%	probably_damaging(0.978)	deleterious(0.04)	deleterious(0.769)	NULL
GPATCH1	55094	genome.wustl.edu	37	19	33603492	33603492	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018025.2	+1	provisional	p.R622I	1.000	201	0%	267	36.3%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GPATCH1	55094	genome.wustl.edu	37	19	33617535	33617535	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018025.2	+1	provisional	p.K887N	1.000	237	0%	245	38.4%	3	33.3%	unknown(0)	deleterious(0)	-	NULL
WDR88	126248	genome.wustl.edu	37	19	33651323	33651323	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_173479.3	+1	validated	p.S334F	1.000	513	0%	558	46.4%	0	-	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
LRP3	4037	genome.wustl.edu	37	19	33697018	33697018	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002333.3	+1	validated	p.D448N	0.995	10	0%	18	50%	406	44.5%	possibly_damaging(0.586)	deleterious(0)	deleterious(0.647)	HMMSmart_LDLa,superfamily_LDL_rcpt_classA_cys-rich
KIAA0355	9710	genome.wustl.edu	37	19	34832351	34832351	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014686.3	+1	validated	p.Q504	1.000	66	0%	83	16.9%	18	5.5%	-	-	-	NULL
ZNF30	90075	genome.wustl.edu	37	19	35434550	35434550	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001099437.1	+1	validated	p.T228I	0.408	99	0%	87	14.9%	4	0%	possibly_damaging(0.606)	deleterious(0.02)	deleterious(0.593)	superfamily_C2H2 and C2HC zinc fingers
HPN	3249	genome.wustl.edu	37	19	35551285	35551285	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002151.2	+1	reviewed	p.I163	0.758	29	0%	31	41.9%	128	49.2%	-	-	-	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
CD22	933	genome.wustl.edu	37	19	35828857	35828857	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001771.3	+1	validated	p.K306N	0.030	83	0%	116	18.1%	7	0%	probably_damaging(0.989)	tolerated(0.14)	deleterious(0.689)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
FFAR3	2865	genome.wustl.edu	37	19	35850746	35850746	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005304.3	+1	validated	p.Q318H	0.000	203	0%	266	15%	0	-	benign(0.003)	tolerated(0.11)	neutral(0.272)	superfamily_SSF81321
MLL4	9757	genome.wustl.edu	37	19	36210704	36210704	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014727.1	+1	reviewed	p.R152Q	1.000	9	0.000	21	0.381	10	40%	unknown(0)	-	-	NULL
MLL4	9757	genome.wustl.edu	37	19	36214068	36214068	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014727.1	+1	reviewed	p.R965L	1.000	51	0%	55	34.5%	18	16.6%	possibly_damaging(0.847)	-	-	HMMPfam_zf-CXXC
MLL4	9757	genome.wustl.edu	37	19	36229236	36229236	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014727.1	+1	reviewed	p.T2642	0.017	48	0%	82	34.1%	305	26.8%	-	-	-	HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain
MLL4	9757	genome.wustl.edu	37	19	36229444	36229444	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014727.1	+1	reviewed	p.R2712W	1.000	31	3.2%	58	37.9%	222	50.4%	probably_damaging(1)	-	-	HMMSmart_SM00508
NPHS1	4868	genome.wustl.edu	37	19	36341942	36341942	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004646.3	-1	reviewed	p.T149	0.998	67	0%	75	52%	0	-	-	-	-	HMMPfam_C2-set_2,superfamily_Immunoglobulin
HCST	10870	genome.wustl.edu	37	19	36394310	36394310	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014266.3	+1	reviewed	p.G34D	0.000	88	0%	84	31%	11	9%	unknown(0)	tolerated(0.71)	-	HMMPfam_DAP10
C19orf46	163183	genome.wustl.edu	37	19	36497461	36497461	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001039876.1	-1	validated	p.S244F	0.947	31	0%	37	45.9%	0	-	possibly_damaging(0.92)	deleterious(0.01)	deleterious(0.776)	NULL
ZNF345	25850	genome.wustl.edu	37	19	37368616	37368616	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003419.3	+1	provisional	p.F295C	0.998	156	0%	198	44.4%	4	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF420	147923	genome.wustl.edu	37	19	37618789	37618789	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_144689.3	+1	provisional	p.R299I	0.999	129	0.8%	186	36.6%	0	-	probably_damaging(0.996)	tolerated(0.19)	deleterious(0.511)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF585A	199704	genome.wustl.edu	37	19	37644119	37644119	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152655.2	-1	validated	p.D173Y	0.299	242	0%	252	36.5%	0	-	probably_damaging(1)	tolerated(1)	deleterious(0.500)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF585A	199704	genome.wustl.edu	37	19	37647227	37647227	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000356958	-1	known	p.D35N	0.894	161	0%	276	46.7%	1	0%	benign(0)	tolerated(0.36)	neutral(0.020)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF585B	92285	genome.wustl.edu	37	19	37676310	37676310	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152279.3	-1	validated	p.R710Q	0.935	377	0%	457	43.8%	2	0%	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF570	148268	genome.wustl.edu	37	19	37961272	37961272	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_144694.1	+1	provisional	p.L6I	0.999	352	0%	403	31%	4	50%	benign(0.15)	tolerated(0.22)	neutral(0.055)	NULL
ZNF570	148268	genome.wustl.edu	37	19	37975993	37975993	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_144694.1	+1	provisional	p.R490K	1.000	205	0%	278	40.3%	1	0%	benign(0.002)	tolerated(0.16)	neutral(0.059)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF540	163255	genome.wustl.edu	37	19	38102518	38102518	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152606.3	+1	validated	p.L113M	0.000	159	0%	222	42.3%	0	-	benign(0.072)	tolerated(0.23)	neutral(0.046)	NULL
ZNF781	163115	genome.wustl.edu	37	19	38160221	38160221	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152605.3	-1	validated	p.E277*	0.970	253	0%	369	44.4%	0	-	-	-	-	NULL
ZNF607	84775	genome.wustl.edu	37	19	38189357	38189357	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032689.4	-1	validated	p.K559E	1.000	85	0%	83	39.8%	1	0%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	superfamily_C2H2 and C2HC zinc fingers
WDR87	83889	genome.wustl.edu	37	19	38379271	38379271	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_031951.3	-1	provisional	p.E1641D	0.125	276	0%	335	44.2%	0	-	probably_damaging(0.967)	-	-	superfamily_WD40 repeat-like,superfamily_ARM repeat
WDR87	83889	genome.wustl.edu	37	19	38379394	38379394	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_031951.3	-1	provisional	p.E1600D	0.678	453	0.2%	511	43.4%	0	-	probably_damaging(0.967)	-	-	superfamily_WD40 repeat-like,superfamily_ARM repeat
WDR87	83889	genome.wustl.edu	37	19	38380081	38380081	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_031951.3	-1	provisional	p.K1371N	0.920	337	0%	344	16.6%	0	-	possibly_damaging(0.553)	-	-	superfamily_WD40 repeat-like,superfamily_ARM repeat
WDR87	83889	genome.wustl.edu	37	19	38384165	38384165	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_031951.3	-1	provisional	p.Q687H	0.274	92	0%	108	47.2%	0	-	probably_damaging(0.996)	-	-	superfamily_WD40 repeat-like
WDR87	83889	genome.wustl.edu	37	19	38386834	38386834	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000447313	-1	known	p.D64Y	0.393	106	0%	137	40.1%	0	-	probably_damaging(0.991)	-	-	NULL
RYR1	6261	genome.wustl.edu	37	19	38998418	38998418	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000540.2	+1	reviewed	p.Q2961	1.000	122	0%	160	48.7%	0	-	-	-	-	NULL
ACTN4	81	genome.wustl.edu	37	19	39200067	39200067	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004924.3	+1	reviewed	p.F228	0.958	102	0%	154	12.3%	964	19.3%	-	-	-	HMMPfam_CH,HMMSmart_CH,superfamily_Calponin-homology
SIRT2	22933	genome.wustl.edu	37	19	39380342	39380342	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012237.2	-1	reviewed	p.P140H	1.000	229	0%	216	50.5%	58	37.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SIR2,superfamily_DHS-like NAD/FAD-binding domain
SIRT2	22933	genome.wustl.edu	37	19	39380378	39380378	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012237.2	-1	reviewed	p.P128L	1.000	178	0%	175	38.9%	49	40.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SIR2,superfamily_DHS-like NAD/FAD-binding domain
FBXO17	115290	genome.wustl.edu	37	19	39439268	39439268	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_148169.1	-1	reviewed	p.E143*	1.000	82	0%	113	45.1%	1	0%	-	-	-	HMMPfam_FBA,superfamily_Galactose-binding domain-like
NCCRP1	342897	genome.wustl.edu	37	19	39691087	39691087	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001001414.1	+1	provisional	p.R217Q	0.721	19	0%	32	50%	5	0%	probably_damaging(0.988)	tolerated(0.58)	neutral(0.443)	HMMPfam_FBA,superfamily_Gal_bind_like
NCCRP1	342897	genome.wustl.edu	37	19	39691335	39691335	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001001414.1	+1	provisional	p.P256H	0.277	42	0%	63	34.9%	6	50%	possibly_damaging(0.611)	tolerated(0.55)	neutral(0.218)	HMMPfam_FBA,superfamily_Gal_bind_like
SAMD4B	55095	genome.wustl.edu	37	19	39847541	39847541	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018028.2	+1	provisional	p.F3S	1.000	46	0%	65	43.1%	30	63.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PLEKHG2	64857	genome.wustl.edu	37	19	39911448	39911448	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_022835.2	+1	validated	p.R452Q	0.960	100	0%	132	40.9%	9	44.4%	possibly_damaging(0.647)	deleterious(0.01)	deleterious(0.633)	NULL
FCGBP	8857	genome.wustl.edu	37	19	40354500	40354500	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003890.2	-1	validated	p.E5323D	0.000	50	0%	59	25.4%	77	6.4%	possibly_damaging(0.888)	tolerated(0.62)	neutral(0.351)	HMMPfam_VWD,HMMSmart_VWD
FCGBP	8857	genome.wustl.edu	37	19	40399290	40399290	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003890.2	-1	validated	p.Q2135H	0.101	104	0%	132	13.6%	21	14.2%	unknown(0)	tolerated(0.26)	-	HMMPfam_VWD,HMMSmart_VWD
FCGBP	8857	genome.wustl.edu	37	19	40408106	40408106	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003890.2	-1	validated	p.E1539K	0.886	130	0%	180	35%	1	0%	probably_damaging(1)	tolerated(0.31)	deleterious(0.527)	superfamily_Cysrich_TIL,HMMPfam_TIL
ZNF546	339327	genome.wustl.edu	37	19	40520055	40520055	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_178544.3	+1	validated	p.R293I	1.000	177	0%	221	51.6%	0	-	possibly_damaging(0.657)	tolerated(0.11)	deleterious(0.503)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF546	339327	genome.wustl.edu	37	19	40520475	40520475	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000444043	+1	known	p.E49*	0.005	81	0%	130	42.3%	1	0%	probably_damaging(0.988)	tolerated(0.1)	deleterious(0.724)	NULL
ZNF780A	284323	genome.wustl.edu	37	19	40580649	40580649	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001142577.1	-1	validated	p.R568Q	0.000	246	0%	320	19.7%	4	0%	possibly_damaging(0.895)	tolerated(0.21)	neutral(0.397)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
LOC100289661	100289661	genome.wustl.edu	37	19	40710446	40710446	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_002343682.1	-1	model	p.D528N	1.000	38	0%	47	61.7%	9	33.3%	-	-	-	NULL
AKT2	208	genome.wustl.edu	37	19	40762851	40762851	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001626.3	-1	reviewed	p.N53H	1.000	131	0%	152	32.2%	49	42.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
PRX	57716	genome.wustl.edu	37	19	40903085	40903085	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_181882.2	-1	reviewed	p.R392*	1.000	31	0%	37	51.4%	1	0%	-	-	-	NULL
PRX	57716	genome.wustl.edu	37	19	40904691	40904691	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_181882.2	-1	reviewed	p.E73K	1.000	21	0%	47	38.3%	2	50%	possibly_damaging(0.481)	deleterious(0.03)	deleterious(0.524)	HMMSmart_SM00228,superfamily_PDZ domain-like
SPTBN4	57731	genome.wustl.edu	37	19	41000825	41000825	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020971.2	+1	reviewed	p.Q203H	0.995	297	0%	427	11.2%	1	0%	benign(0.001)	tolerated(0.51)	neutral(0.009)	HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain
LTBP4	8425	genome.wustl.edu	37	19	41132887	41132887	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001042544.1	+1	reviewed	p.S1398L	0.997	70	0%	96	47.9%	96	17.7%	-	-	-	NULL
ITPKC	80271	genome.wustl.edu	37	19	41231306	41231306	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_025194.2	+1	reviewed	p.R406Q	1.000	109	0%	150	43.3%	8	50%	possibly_damaging(0.836)	tolerated(0.06)	deleterious(0.642)	HMMPfam_IPK
CYP2A6	1548	genome.wustl.edu	37	19	41351385	41351385	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000762.5	-1	reviewed	p.A325	0.995	199	0%	351	41.9%	0	-	-	-	-	HMMPfam_p450,superfamily_Cytochrome P450
CYP2A13	1553	genome.wustl.edu	37	19	41601815	41601815	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000766.3	+1	reviewed	p.R485Q	0.000	161	0%	228	43%	0	-	possibly_damaging(0.669)	tolerated(0.06)	deleterious(0.559)	HMMPfam_p450,superfamily_Cytochrome_P450
AXL	558	genome.wustl.edu	37	19	41762480	41762480	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021913.3	+1	reviewed	p.S720	1.000	107	0%	129	43.4%	25	0%	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
HNRNPUL1	11100	genome.wustl.edu	37	19	41800349	41800349	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007040.3	+1	reviewed	p.I458T	1.000	104	0%	112	45.5%	356	41%	possibly_damaging(0.906)	deleterious(0)	deleterious(0.804)	superfamily_P-loop containing nucleoside triphosphate hydrolases
CCDC97	90324	genome.wustl.edu	37	19	41828592	41828592	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_052848.1	+1	provisional	p.A335V	0.164	83	0%	117	11.1%	102	12.7%	unknown(0)	tolerated(1)	-	NULL
BCKDHA	593	genome.wustl.edu	37	19	41916712	41916712	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000709.3	+1	reviewed	p.E93	1.000	47	0%	47	44.7%	84	54.7%	-	-	-	superfamily_SSF52518
CD79A	973	genome.wustl.edu	37	19	42383220	42383220	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001783.3	+1	reviewed	p.F80L	0.000	45	0%	59	47.5%	0	-	benign(0.032)	tolerated(0.88)	neutral(0.002)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
ARHGEF1	9138	genome.wustl.edu	37	19	42409408	42409408	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_199002.1	+1	reviewed	p.P792	0.844	35	0%	45	46.7%	60	50%	-	-	-	NULL
ATP1A3	478	genome.wustl.edu	37	19	42471214	42471214	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000441343	-1	known	p.S1067Y	0.616	68	0%	115	44.3%	0	-	unknown(0)	-	-	NULL
ATP1A3	478	genome.wustl.edu	37	19	42485938	42485938	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152296.3	-1	reviewed	p.H413R	1.000	96	0%	129	37.2%	0	-	benign(0)	tolerated(1)	-	HMMPfam_Hydrolase,superfamily_SSF56784,superfamily_SSF81660,superfamily_SSF81665
ATP1A3	478	genome.wustl.edu	37	19	42489181	42489181	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152296.3	-1	reviewed	p.V294	0.892	154	0%	193	48.2%	0	-	-	-	-	HMMPfam_E1-E2_ATPase,superfamily_SSF81665
GSK3A	2931	genome.wustl.edu	37	19	42741054	42741054	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_019884.2	-1	validated	p.N171D	1.000	173	0%	229	51.5%	145	40%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
ERF	2077	genome.wustl.edu	37	19	42753519	42753519	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006494.2	-1	validated	p.P249T	1.000	14	0%	20	30%	66	43.9%	benign(0.038)	tolerated(0.11)	neutral(0.274)	NULL
PSG3	5671	genome.wustl.edu	37	19	43233279	43233279	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021016.3	-1	validated	p.V413	0.001	353	0%	411	47.7%	0	-	-	-	-	NULL
PSG1	5669	genome.wustl.edu	37	19	43348515	43348515	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000449000	-1	known	p.V413	0.010	436	0%	431	34.1%	0	-	-	-	-	HMMSmart_SM00409
PSG6	5675	genome.wustl.edu	37	19	43411128	43411128	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002782.3	-1	provisional	p.R396C	0.000	432	0%	518	44.6%	0	-	possibly_damaging(0.946)	tolerated(0.18)	neutral(0.446)	HMMSmart_IGc2,superfamily_SSF48726
PSG7	5676	genome.wustl.edu	37	19	43430157	43430157	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002783.2	-1	reviewed	p.I337M	0.035	261	0%	330	40.6%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	superfamily_Immunoglobulin
ZNF576	79177	genome.wustl.edu	37	19	44103327	44103327	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001145347.1	+1	validated	p.A144T	0.916	36	0%	67	43.3%	48	47.9%	benign(0.019)	tolerated(1)	neutral(0.001)	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2
SRRM5	100170229	genome.wustl.edu	37	19	44117906	44117906	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001145641.1	+1	validated	p.R545C	0.000	375	0%	342	42.1%	0	-	benign(0.043)	tolerated(0.07)	neutral(0.322)	NULL
SMG9	56006	genome.wustl.edu	37	19	44237604	44237604	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_019108.2	-1	validated	p.G404V	1.000	148	0%	227	48%	94	39.3%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
ZNF283	284349	genome.wustl.edu	37	19	44351349	44351349	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_181845.1	+1	validated	p.R199I	0.000	84	0%	104	34.6%	2	0%	possibly_damaging(0.802)	tolerated(0.19)	neutral(0.351)	superfamily_C2H2 and C2HC zinc fingers
ZNF404	342908	genome.wustl.edu	37	19	44377242	44377242	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001033719.2	-1	validated	p.R375I	0.928	97	0%	100	23%	1	0%	probably_damaging(0.997)	tolerated(0.07)	deleterious(0.785)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF230	7773	genome.wustl.edu	37	19	44514754	44514754	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006300.3	+1	validated	p.R188I	0.937	203	0%	272	43.4%	5	80%	probably_damaging(0.999)	tolerated(0.05)	deleterious(0.836)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF223	7766	genome.wustl.edu	37	19	44571004	44571004	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_013361.4	+1	validated	p.E341D	1.000	113	0%	149	38.9%	6	50%	benign(0.004)	tolerated(0.11)	neutral(0.272)	superfamily_C2H2 and C2HC zinc fingers
ZNF226	7769	genome.wustl.edu	37	19	44681501	44681501	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001032372.1	+1	validated	p.E696*	1.000	267	0%	377	25.7%	8	50%	-	-	-	superfamily_SSF57667
ZNF235	9310	genome.wustl.edu	37	19	44792304	44792304	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004234.4	-1	reviewed	p.E428D	1.000	167	0%	203	43.8%	1	0%	probably_damaging(0.987)	deleterious(0.01)	deleterious(0.842)	superfamily_C2H2 and C2HC zinc fingers
ZNF180	7733	genome.wustl.edu	37	19	44981821	44981821	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_013256.3	-1	validated	p.K293Q	0.027	186	0%	216	40.7%	1	100%	possibly_damaging(0.893)	tolerated(0.07)	deleterious(0.671)	superfamily_C2H2 and C2HC zinc fingers
ZNF180	7733	genome.wustl.edu	37	19	44981904	44981904	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_013256.3	-1	validated	p.R265I	0.965	106	0%	129	42.6%	1	100%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	superfamily_C2H2 and C2HC zinc fingers
ZNF296	162979	genome.wustl.edu	37	19	45575217	45575217	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_145288.1	-1	provisional	p.T357M	0.000	62	0%	55	43.6%	0	-	possibly_damaging(0.772)	tolerated(0.08)	deleterious(0.587)	NULL
EXOC3L2	90332	genome.wustl.edu	37	19	45716340	45716340	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_138568.3	-1	validated	p.R406Q	0.410	4	0.000	12	0.417	4	0%	unknown(0)	tolerated(0.41)	-	NULL
HIF3A	64344	genome.wustl.edu	37	19	46834522	46834522	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152795.2	+1	reviewed	p.L608I	0.998	122	0%	152	36.8%	0	-	benign(0.224)	tolerated(0.2)	neutral(0.071)	NULL
PRKD2	25865	genome.wustl.edu	37	19	47197301	47197301	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001079880.1	-1	reviewed	p.I469	0.648	35	0%	56	41.1%	87	42.5%	-	-	-	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
STRN4	29888	genome.wustl.edu	37	19	47230775	47230775	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001039877.1	-1	validated	p.G401	1.000	101	0%	84	29.8%	83	16.8%	-	-	-	NULL
ARHGAP35	2909	genome.wustl.edu	37	19	47422932	47422932	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004491.4	+1	reviewed	p.E334K	1.000	43	0%	51	25.5%	2	0%	probably_damaging(0.982)	tolerated(0.78)	neutral(0.427)	NULL
ARHGAP35	2909	genome.wustl.edu	37	19	47423130	47423130	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004491.4	+1	reviewed	p.E400K	0.994	92	0%	109	45%	3	33.3%	benign(0.418)	tolerated(0.25)	neutral(0.173)	HMMSmart_SM00441
ARHGAP35	2909	genome.wustl.edu	37	19	47424921	47424921	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004491.4	+1	reviewed	p.R997*	1.000	76	0%	76	38.2%	7	0%	-	-	-	NULL
ARHGAP35	2909	genome.wustl.edu	37	19	47425048	47425048	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004491.4	+1	reviewed	p.P1039L	1.000	33	0%	54	31.5%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DHX34	9704	genome.wustl.edu	37	19	47856588	47856588	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014681.5	+1	reviewed	p.D101N	1.000	47	0%	69	47.8%	37	45.9%	possibly_damaging(0.813)	deleterious(0.02)	deleterious(0.690)	NULL
KPTN	11133	genome.wustl.edu	37	19	47978758	47978758	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007059.2	-1	validated	p.R409Q	0.776	100	0%	98	52%	11	36.3%	probably_damaging(0.994)	tolerated(0.13)	deleterious(0.705)	NULL
KPTN	11133	genome.wustl.edu	37	19	47984032	47984032	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007059.2	-1	validated	p.T195M	0.994	106	0%	117	29.9%	12	33.3%	possibly_damaging(0.946)	tolerated(0.15)	deleterious(0.631)	NULL
ZNF541	84215	genome.wustl.edu	37	19	48043096	48043096	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000263351	-1	known	p.C478*	0.998	113	0%	151	47.7%	1	0%	possibly_damaging(0.74)	deleterious(0.05)	deleterious(0.617)	NULL
ELSPBP1	64100	genome.wustl.edu	37	19	48519223	48519223	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_022142.3	+1	reviewed	p.F94L	0.000	120	0%	157	45.9%	0	-	benign(0.001)	tolerated(0.76)	neutral(0.001)	HMMPfam_fn2,HMMSmart_SM00059,superfamily_Kringle-like
ELSPBP1	64100	genome.wustl.edu	37	19	48522988	48522988	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_022142.3	+1	reviewed	p.N123T	0.614	162	0%	171	48.5%	0	-	possibly_damaging(0.915)	deleterious(0.04)	deleterious(0.716)	HMMSmart_SM00059,superfamily_Kringle-like
ELSPBP1	64100	genome.wustl.edu	37	19	48522991	48522991	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_022142.3	+1	reviewed	p.S124Y	0.597	161	0%	173	41.6%	0	-	probably_damaging(0.96)	deleterious(0)	deleterious(0.848)	HMMSmart_SM00059,superfamily_Kringle-like
PLA2G4C	8605	genome.wustl.edu	37	19	48578123	48578123	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003706.2	-1	reviewed	p.G303S	0.000	140	0%	191	30.4%	1	0%	benign(0.033)	tolerated(1)	neutral(0.002)	HMMSmart_PLAc,superfamily_Acyl_Trfase/lysoPlipase
PLA2G4C	8605	genome.wustl.edu	37	19	48608642	48608642	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003706.2	-1	reviewed	p.R23Q	0.539	262	0%	261	47.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_PLAc,superfamily_Acyl_Trfase/lysoPlipase
CCDC114	93233	genome.wustl.edu	37	19	48801292	48801292	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_144577.3	-1	validated	p.P452	0.000	49	0%	50	42%	4	0%	-	-	-	NULL
GRIN2D	2906	genome.wustl.edu	37	19	48922911	48922911	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000836.2	+1	reviewed	p.S644L	1.000	91	0%	122	42.6%	1	0%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_Lig_chan,HMMSmart_PBPe,superfamily_SSF53850
GRIN2D	2906	genome.wustl.edu	37	19	48945113	48945113	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000836.2	+1	reviewed	p.S780	0.224	32	0%	41	51.2%	8	75%	-	-	-	HMMPfam_Lig_chan,HMMSmart_PBPe,superfamily_SSF53850
LMTK3	114783	genome.wustl.edu	37	19	49012771	49012771	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001080434.1	-1	provisional	e5-1	1.000	69	0%	61	13.1%	0	-	-	-	-	-
MAMSTR	284358	genome.wustl.edu	37	19	49222283	49222283	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001130915.1	-1	validated	p.T2	1.000	74	0%	103	27.2%	0	-	-	-	-	NULL
PPP1R15A	23645	genome.wustl.edu	37	19	49376700	49376700	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014330.3	+1	validated	p.I70	0.000	84	0%	120	15.8%	7	0%	-	-	-	NULL
KCNA7	3743	genome.wustl.edu	37	19	49573775	49573775	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_031886.2	-1	reviewed	p.R306W	0.974	67	0%	58	53.4%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_Ion_trans,superfamily_SSF81324
SNRNP70	6625	genome.wustl.edu	37	19	49601736	49601736	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003089.4	+1	validated	p.F106	0.998	133	0%	164	43.3%	135	47.4%	-	-	-	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
SCAF1	58506	genome.wustl.edu	37	19	50155979	50155979	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021228.2	+1	validated	p.R778Q	0.956	32	0%	31	48.4%	65	36.9%	probably_damaging(0.963)	deleterious(0)	deleterious(0.850)	NULL
AP2A1	160	genome.wustl.edu	37	19	50285820	50285820	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014203.2	+1	reviewed	p.S104	0.042	63	0%	88	40.9%	221	38.4%	-	-	-	HMMPfam_Adaptin_N,superfamily_ARM repeat
AP2A1	160	genome.wustl.edu	37	19	50303015	50303015	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014203.2	+1	reviewed	p.E422K	0.999	48	0%	57	40.4%	889	37.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Adaptin_N,superfamily_ARM repeat
PNKP	11284	genome.wustl.edu	37	19	50365987	50365987	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007254.2	-1	provisional	p.D275	0.997	33	0%	52	42.3%	60	40%	-	-	-	HMMPfam_PNK3P,superfamily_SSF56784
IL4I1	259307	genome.wustl.edu	37	19	50398344	50398344	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_172374.1	-1	reviewed	p.R138C	1.000	57	0%	52	44.2%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Amino_oxidase,superfamily_FAD/NAD(P)-binding domain
NUP62	23636	genome.wustl.edu	37	19	50412114	50412114	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012346.3	-1	reviewed	p.G317	0.000	40	0%	33	42.4%	15	40%	-	-	-	HMMPfam_Nsp1_C
NUP62	23636	genome.wustl.edu	37	19	50412640	50412640	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012346.3	-1	reviewed	p.F142S	1.000	101	0%	105	45.7%	71	39.4%	possibly_damaging(0.839)	deleterious(0.01)	deleterious(0.726)	NULL
SIGLEC16	400709	genome.wustl.edu	37	19	50473756	50473756	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000417280	+1	known	p.L213F	0.000	293	0%	355	27.9%	0	-	possibly_damaging(0.92)	deleterious(0.01)	deleterious(0.776)	HMMSmart_SM00409,HMMPfam_C2-set_2,superfamily_Immunoglobulin
MYH14	79784	genome.wustl.edu	37	19	50789769	50789769	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001077186.1	+1	reviewed	p.R1491W	0.997	26	0%	60	43.3%	325	52%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Myosin_tail_1
MYBPC2	4606	genome.wustl.edu	37	19	50965290	50965290	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004533.3	+1	validated	p.P1075	0.005	42	0%	51	39.2%	0	-	-	-	-	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726
FAM71E1	112703	genome.wustl.edu	37	19	50979135	50979135	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_138411.1	-1	predicted	p.F105	1.000	75	0%	92	43.5%	6	66.6%	-	-	-	NULL
JOSD2	126119	genome.wustl.edu	37	19	51013622	51013622	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_138334.2	-1	provisional	p.L23	1.000	53	0%	56	44.6%	24	33.3%	-	-	-	HMMPfam_Josephin
JOSD2	126119	genome.wustl.edu	37	19	51013627	51013627	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_138334.2	-1	provisional	p.L21P	1.000	49	0%	62	48.4%	27	29.6%	probably_damaging(0.999)	deleterious(0.05)	deleterious(0.836)	HMMPfam_Josephin
SYT3	84258	genome.wustl.edu	37	19	51132722	51132722	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032298.2	-1	validated	p.F370L	1.000	69	0%	97	51.5%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
SYT3	84258	genome.wustl.edu	37	19	51136015	51136015	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032298.2	-1	validated	p.L68	1.000	84	0%	118	44.9%	0	-	-	-	-	NULL
KLK2	3817	genome.wustl.edu	37	19	51381667	51381667	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005551.3	+1	validated	p.S213Y	1.000	237	0%	310	43.5%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases,PatternScan_TRYPSIN_SER
LOC390956	390956	genome.wustl.edu	37	19	51430518	51430518	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_372741.4	-1	model	p.G126V	1.000	16	0%	35	40%	0	-	-	-	-	HMMPfam_Pro_isomerase,superfamily_Cyclophilin-like
KLK14	43847	genome.wustl.edu	37	19	51581280	51581280	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_022046.4	-1	validated	p.T263M	0.007	74	0%	89	47.2%	83	44.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Pept_Ser_Cys
SIGLEC9	27180	genome.wustl.edu	37	19	51628597	51628597	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014441.1	+1	provisional	p.E122D	0.004	125	0%	155	41.3%	0	-	benign(0.193)	tolerated(0.32)	neutral(0.042)	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
ENSG00000171101	0	genome.wustl.edu	37	19	51671097	51671097	+	Silent	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000341811	+1	known	p.T101	0.000	35	0%	36	47.2%	0	-	-	-	-	HMMSmart_IG,superfamily_SSF48726
CD33	945	genome.wustl.edu	37	19	51729592	51729592	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001772.3	+1	validated	p.I242T	0.000	174	0%	198	45.5%	0	-	possibly_damaging(0.897)	deleterious(0)	deleterious(0.798)	NULL
CEACAM18	729767	genome.wustl.edu	37	19	51984797	51984797	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001080405.1	+1	provisional	p.S245Y	0.007	98	0%	139	38.1%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMSmart_SM00409,superfamily_Immunoglobulin
ZNF175	7728	genome.wustl.edu	37	19	52089964	52089964	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007147.2	+1	validated	p.R127I	0.026	195	0%	224	16.1%	0	-	benign(0.085)	tolerated(0.17)	neutral(0.065)	NULL
SIGLEC5	8778	genome.wustl.edu	37	19	52129327	52129327	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003830.2	-1	validated	p.E474D	0.000	199	0%	193	45.6%	0	-	benign(0.004)	tolerated(0.55)	neutral(0.007)	NULL
ZNF649	65251	genome.wustl.edu	37	19	52394854	52394854	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_023074.3	-1	validated	p.E179*	0.000	411	0%	448	40.4%	3	33.3%	-	-	-	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF350	59348	genome.wustl.edu	37	19	52468945	52468945	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021632.3	-1	validated	p.R254Q	0.009	228	0%	317	46.1%	5	80%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF841	284371	genome.wustl.edu	37	19	52568641	52568641	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001136499.1	-1	validated	p.E832K	0.000	155	0%	199	45.7%	10	70%	possibly_damaging(0.647)	tolerated(0.34)	neutral(0.250)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF841	284371	genome.wustl.edu	37	19	52569537	52569537	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001136499.1	-1	validated	p.R533I	0.604	176	0%	227	45.8%	6	66.6%	probably_damaging(0.997)	tolerated(0.15)	deleterious(0.707)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF616	90317	genome.wustl.edu	37	19	52619047	52619047	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_178523.3	-1	validated	p.R457I	0.000	261	0%	323	42.7%	9	11.1%	probably_damaging(0.998)	tolerated(0.08)	deleterious(0.774)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF616	90317	genome.wustl.edu	37	19	52619218	52619218	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_178523.3	-1	validated	p.R400Q	0.000	276	0%	363	47.9%	11	9%	benign(0.319)	tolerated(0.59)	neutral(0.104)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF836	162962	genome.wustl.edu	37	19	52659467	52659467	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001102657.1	-1	provisional	p.R490K	0.984	158	0%	182	39.6%	5	80%	benign(0.249)	tolerated(0.31)	neutral(0.052)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF480	147657	genome.wustl.edu	37	19	52825339	52825339	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_144684.2	+1	validated	p.R279I	0.145	77	0%	114	36%	1	100%	possibly_damaging(0.951)	tolerated(0.12)	deleterious(0.655)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF528	84436	genome.wustl.edu	37	19	52918494	52918494	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032423.2	+1	validated	p.S130Y	0.000	126	0%	137	42.3%	3	0%	benign(0.017)	tolerated(0.18)	neutral(0.057)	NULL
ZNF534	147658	genome.wustl.edu	37	19	52937238	52937238	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001143939.1	+1	validated	p.E16*	0.997	319	0%	403	40.2%	0	-	-	-	-	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
ZNF534	147658	genome.wustl.edu	37	19	52941193	52941193	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001143939.1	+1	validated	p.F173L	0.002	180	0%	218	46.8%	0	-	benign(0.002)	tolerated(0.73)	neutral(0.002)	superfamily_SSF57667
ZNF534	147658	genome.wustl.edu	37	19	52942310	52942310	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001143939.1	+1	validated	p.R546W	0.000	207	0%	266	40.2%	0	-	unknown(0)	tolerated(0.22)	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ENSG00000248326	0	genome.wustl.edu	37	19	53016049	53016049	+	RNA	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000502966	-1	novel	NULL	0.983	85	0%	92	46.7%	6	16.6%	-	-	-	-
ZNF701	55762	genome.wustl.edu	37	19	53086658	53086658	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018260.2	+1	validated	p.R449Q	0.003	147	0%	160	45%	3	33.3%	benign(0.022)	tolerated(0.7)	neutral(0.003)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF611	81856	genome.wustl.edu	37	19	53209269	53209269	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_030972.3	-1	validated	p.E347*	0.003	182	0.5%	176	40.9%	2	50%	-	-	-	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_Multiheme cytochromes
ZNF600	162966	genome.wustl.edu	37	19	53269540	53269540	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_198457.2	-1	validated	p.R490I	0.803	226	0%	270	47.8%	17	35.2%	possibly_damaging(0.849)	tolerated(0.08)	deleterious(0.626)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF468	90333	genome.wustl.edu	37	19	53344539	53344539	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001008801.1	-1	validated	p.F336	0.033	257	0%	333	39.6%	4	25%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF665	79788	genome.wustl.edu	37	19	53668902	53668902	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024733.3	-1	provisional	p.Q281*	0.069	155	0%	176	47.7%	1	100%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF765	91661	genome.wustl.edu	37	19	53911569	53911569	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001040185.1	+1	provisional	p.S254L	0.000	178	0%	269	39%	8	12.5%	benign(0)	tolerated(0.1)	neutral(0.286)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF331	55422	genome.wustl.edu	37	19	54080952	54080952	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001079906.1	+1	validated	p.E380K	0.987	145	0%	172	38.4%	8	12.5%	possibly_damaging(0.878)	deleterious(0.02)	deleterious(0.725)	superfamily_SSF57667
ZNF331	55422	genome.wustl.edu	37	19	54081178	54081178	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001079906.1	+1	validated	p.R455Q	0.000	54	0%	53	30.2%	13	38.4%	benign(0.362)	tolerated(0.13)	neutral(0.367)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
DPRX	503834	genome.wustl.edu	37	19	54140011	54140011	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001012728.1	+1	validated	p.H115	0.000	115	0%	169	47.9%	0	-	-	-	-	NULL
VSTM1	284415	genome.wustl.edu	37	19	54544253	54544253	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_198481.3	-1	validated	p.P225S	0.024	124	0%	135	39.3%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
TFPT	29844	genome.wustl.edu	37	19	54618050	54618050	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_013342.3	-1	validated	p.F18	1.000	24	0%	37	35.1%	49	34.6%	-	-	-	NULL
LILRB5	10990	genome.wustl.edu	37	19	54759980	54759980	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001081442.1	-1	reviewed	p.R194I	0.034	81	0%	84	47.6%	0	-	probably_damaging(0.977)	deleterious(0)	deleterious(0.863)	HMMSmart_SM00409,superfamily_Immunoglobulin
TTYH1	57348	genome.wustl.edu	37	19	54942079	54942079	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001005367.1	+1	reviewed	p.A343V	0.720	44	0%	42	50%	2	0%	benign(0.005)	deleterious(0.03)	neutral(0.364)	HMMPfam_Tweety
LENG8	114823	genome.wustl.edu	37	19	54967844	54967844	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_052925.2	+1	validated	p.R492Q	1.000	11	0%	18	44.4%	45	46.6%	probably_damaging(0.997)	tolerated(0.06)	deleterious(0.788)	NULL
LENG8	114823	genome.wustl.edu	37	19	54969131	54969131	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_052925.2	+1	validated	p.E618K	1.000	64	0%	50	44%	243	47.3%	benign(0.003)	deleterious(0.03)	neutral(0.364)	HMMPfam_SAC3_GANP
KIR3DX1	90011	genome.wustl.edu	37	19	55044967	55044967	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000335056	+1	known	p.F29L	0.000	147	0%	187	48.7%	0	-	benign(0.002)	tolerated(0.09)	neutral(0.296)	superfamily_Immunoglobulin
KIR3DX1	90011	genome.wustl.edu	37	19	55049183	55049183	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000335056	+1	known	e6-1	0.000	310	0.6%	378	41%	0	-	-	-	-	-
LILRB4	11006	genome.wustl.edu	37	19	55179126	55179126	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006847.3	+1	reviewed	p.A361V	0.001	217	0%	314	40.4%	13	7.6%	possibly_damaging(0.662)	deleterious(0)	deleterious(0.678)	NULL
KIR3DL3	115653	genome.wustl.edu	37	19	55247441	55247441	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_153443.3	+1	reviewed	p.S371P	0.000	449	0%	594	19.5%	0	-	possibly_damaging(0.903)	tolerated(0.21)	neutral(0.402)	NULL
NCR1	9437	genome.wustl.edu	37	19	55424096	55424096	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004829.5	+1	validated	p.R258W	0.000	205	0%	244	43.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NLRP7	199713	genome.wustl.edu	37	19	55451208	55451208	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001127255.1	-1	reviewed	p.E327K	0.000	63	0%	80	35%	0	-	benign(0.055)	tolerated(0.57)	neutral(0.009)	HMMPfam_NACHT,superfamily_P-loop containing nucleoside triphosphate hydrolases
NLRP2	55655	genome.wustl.edu	37	19	55493539	55493539	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017852.3	+1	validated	p.N158S	0.000	84	0%	83	37.3%	0	-	benign(0)	tolerated(0.37)	neutral(0.019)	NULL
NLRP2	55655	genome.wustl.edu	37	19	55496484	55496484	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017852.3	+1	validated	p.D700E	0.000	238	0%	319	41.4%	0	-	benign(0.158)	tolerated(0.06)	neutral(0.337)	superfamily_RNI-like
EPS8L1	54869	genome.wustl.edu	37	19	55593883	55593883	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_133180.2	+1	reviewed	p.S376L	0.000	9	0.000	14	0.571	130	50%	benign(0)	tolerated(0.22)	neutral(0.042)	NULL
SYT5	6861	genome.wustl.edu	37	19	55685974	55685974	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003180.2	-1	validated	p.R291W	0.997	280	0%	364	25%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
BRSK1	84446	genome.wustl.edu	37	19	55805427	55805427	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032430.1	+1	validated	p.K167N	0.995	117	0%	134	53%	0	-	benign(0.176)	tolerated(0.16)	neutral(0.075)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
RPL28	6158	genome.wustl.edu	37	19	55899675	55899675	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000991.4	+1	reviewed	p.R130Q	1.000	73	0%	65	33.8%	3093	37.9%	possibly_damaging(0.708)	tolerated(0.15)	deleterious(0.496)	NULL
LOC100288302	100288302	genome.wustl.edu	37	19	55995347	55995347	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_002343697.1	-1	model	p.R92C	0.620	25	0%	38	55.3%	26	53.8%	-	-	-	NULL
NLRP4	147945	genome.wustl.edu	37	19	56369021	56369021	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000419009	+1	known	p.L13F	0.001	88	0%	135	38.5%	0	-	-	-	-	NULL
NLRP8	126205	genome.wustl.edu	37	19	56466747	56466747	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_176811.2	+1	provisional	p.N441	0.000	97	0%	110	36.4%	0	-	-	-	-	NULL
ZSCAN5C	649137	genome.wustl.edu	37	19	56717489	56717489	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000376267	+1	known	p.C69	0.089	166	0%	212	35.8%	0	-	-	-	-	HMMPfam_SCAN,HMMSmart_SCAN
LOC646698	646698	genome.wustl.edu	37	19	56758153	56758153	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_001725568.1	+1	model	p.E261K	0.000	180	0%	196	46.4%	0	-	-	-	-	NULL
ZNF583	147949	genome.wustl.edu	37	19	56935000	56935000	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152478.2	+1	validated	p.E325K	0.002	315	0%	338	47%	2	50%	probably_damaging(0.999)	tolerated(0.56)	deleterious(0.497)	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF667	63934	genome.wustl.edu	37	19	56952584	56952584	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_022103.3	-1	validated	p.R594W	0.001	162	0%	187	49.2%	2	50%	probably_damaging(1)	tolerated(0.17)	deleterious(0.559)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF471	57573	genome.wustl.edu	37	19	57036281	57036281	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020813.2	+1	validated	p.R282I	0.998	131	0%	182	45.6%	3	66.6%	possibly_damaging(0.78)	deleterious(0)	deleterious(0.736)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF471	57573	genome.wustl.edu	37	19	57036638	57036638	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020813.2	+1	validated	p.K401T	1.000	152	0%	220	43.6%	0	-	probably_damaging(0.986)	deleterious(0)	deleterious(0.879)	superfamily_SSF57667
ZNF835	90485	genome.wustl.edu	37	19	57176404	57176404	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001005850.1	-1	provisional	p.D77N	0.000	159	0%	190	37.9%	0	-	probably_damaging(0.988)	tolerated(0.21)	deleterious(0.481)	NULL
PEG3	5178	genome.wustl.edu	37	19	57326654	57326654	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006210.2	-1	reviewed	p.I1052	0.001	242	0%	305	42.6%	1	0%	-	-	-	NULL
PEG3	5178	genome.wustl.edu	37	19	57326724	57326724	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006210.2	-1	reviewed	p.A1029V	0.000	208	0%	239	43.1%	1	0%	benign(0.004)	tolerated(0.59)	neutral(0.004)	NULL
PEG3	5178	genome.wustl.edu	37	19	57327300	57327300	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006210.2	-1	reviewed	p.S837N	0.072	157	0%	196	50%	0	-	benign(0.121)	tolerated(0.34)	neutral(0.033)	NULL
ZIM3	114026	genome.wustl.edu	37	19	57646651	57646651	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_052882.1	-1	provisional	p.D352N	0.002	319	0.3%	325	43.1%	0	-	benign(0.043)	tolerated(0.1)	neutral(0.289)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
AURKC	6795	genome.wustl.edu	37	19	57746284	57746284	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001015878.1	+1	reviewed	p.L206S	1.000	215	0%	279	41.6%	2	100%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
LOC100288446	100288446	genome.wustl.edu	37	19	57868518	57868518	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_002343699.1	-1	model	p.E324*	0.021	96	0%	128	51.6%	4	75%	possibly_damaging(0.649)	tolerated(0.19)	neutral(0.278)	NULL
ZNF548	147694	genome.wustl.edu	37	19	57910836	57910836	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152909.3	+1	validated	p.K394T	0.000	87	0%	125	11.2%	6	16.6%	benign(0.099)	deleterious(0.01)	neutral(0.413)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF17	7565	genome.wustl.edu	37	19	57932210	57932210	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006959.2	+1	validated	p.F450L	0.000	189	0%	250	41.2%	1	100%	benign(0.014)	tolerated(0.37)	neutral(0.019)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF749	388567	genome.wustl.edu	37	19	57955047	57955047	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001023561.2	+1	provisional	p.W177*	0.001	99	0%	125	28.8%	5	100%	-	-	-	superfamily_C2H2 and C2HC zinc fingers
VN1R1	57191	genome.wustl.edu	37	19	57967664	57967664	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020633.2	-1	reviewed	p.S64Y	0.000	64	0%	80	41.2%	0	-	probably_damaging(0.96)	tolerated(0.09)	deleterious(0.700)	superfamily_Family A G protein-coupled receptor-like
ZNF416	55659	genome.wustl.edu	37	19	58084305	58084305	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017879.1	-1	provisional	p.E323K	1.000	238	0%	319	37.6%	2	50%	possibly_damaging(0.926)	tolerated(0.07)	deleterious(0.694)	superfamily_SSF57667
ZNF530	348327	genome.wustl.edu	37	19	58117372	58117372	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020880.3	+1	validated	p.R160M	0.000	71	0%	87	51.7%	2	100%	probably_damaging(0.997)	tolerated(0.08)	deleterious(0.766)	superfamily_SSF57667
ZNF134	7693	genome.wustl.edu	37	19	58131958	58131958	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003435.3	+1	provisional	p.R157S	0.024	85	0%	106	38.7%	14	42.8%	benign(0.074)	deleterious(0.01)	neutral(0.411)	superfamily_C2H2 and C2HC zinc fingers
ZSCAN4	201516	genome.wustl.edu	37	19	58187874	58187874	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152677.2	+1	validated	p.D121Y	0.079	144	0%	151	40.4%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_SCAN
ZSCAN4	201516	genome.wustl.edu	37	19	58190061	58190061	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152677.2	+1	validated	p.G364R	0.002	85	0%	95	56.8%	0	-	probably_damaging(0.991)	deleterious(0.02)	deleterious(0.827)	superfamily_SSF57667
ZNF587	84914	genome.wustl.edu	37	19	58353600	58353600	+	Silent	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_002343662.1	+1	model	p.R464	0.982	132	0%	147	33.3%	2	100%	-	-	-	superfamily_C2H2 and C2HC zinc fingers
ZNF418	147686	genome.wustl.edu	37	19	58439279	58439279	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_133460.1	-1	provisional	p.I90	0.001	122	0%	171	21.1%	0	-	-	-	-	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2
ZNF606	80095	genome.wustl.edu	37	19	58490271	58490271	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_025027.3	-1	validated	p.E593K	1.000	194	0%	207	22.7%	4	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_C2H2 and C2HC zinc fingers
ZNF606	80095	genome.wustl.edu	37	19	58490369	58490369	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_025027.3	-1	validated	p.R560I	1.000	141	0%	171	45.6%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF135	7694	genome.wustl.edu	37	19	58578301	58578301	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003436.3	+1	validated	p.T150M	0.000	121	0.8%	169	51.5%	2	50%	probably_damaging(0.997)	tolerated(0.06)	deleterious(0.788)	NULL
ZNF329	79673	genome.wustl.edu	37	19	58640488	58640488	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024620.3	-1	validated	p.G128D	0.001	95	0%	131	48.9%	1	0%	benign(0.001)	tolerated(0.06)	neutral(0.323)	NULL
A1BG	1	genome.wustl.edu	37	19	58862888	58862888	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_130786.3	-1	reviewed	p.D260G	0.007	26	0%	33	15.2%	0	-	probably_damaging(0.957)	tolerated(0.25)	neutral(0.438)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
ZNF132	7691	genome.wustl.edu	37	19	58945109	58945109	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003433.3	-1	validated	p.E568*	0.975	188	0%	195	48.2%	2	0%	-	-	-	superfamily_C2H2 and C2HC zinc fingers
ZNF132	7691	genome.wustl.edu	37	19	58945637	58945637	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003433.3	-1	validated	p.R392W	0.000	140	0.7%	210	42.9%	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF324	25799	genome.wustl.edu	37	19	58982226	58982226	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014347.1	+1	provisional	p.Q123*	0.000	133	0%	145	42.8%	1	100%	-	-	-	NULL
ZNF446	55663	genome.wustl.edu	37	19	58989177	58989177	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000391694	+1	known	p.S2L	0.001	89	0%	97	36.1%	34	50%	unknown(0)	-	-	NULL
ZNF446	55663	genome.wustl.edu	37	19	58991079	58991079	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017908.2	+1	provisional	p.T233A	0.004	45	0%	41	39%	29	48.2%	possibly_damaging(0.95)	tolerated(0.37)	neutral(0.413)	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
DEFB127	140850	genome.wustl.edu	37	20	139420	139420	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_139074.2	+1	reviewed	p.E19K	0.051	91	0%	99	54.5%	0	-	probably_damaging(0.981)	tolerated(0.07)	deleterious(0.744)	NULL
TRIB3	57761	genome.wustl.edu	37	20	368818	368818	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021158.3	+1	reviewed	p.A55V	0.006	57	0%	90	42.2%	8	25%	probably_damaging(0.978)	tolerated(0.56)	neutral(0.427)	NULL
RAD21L1	642636	genome.wustl.edu	37	20	1276997	1276997	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000381882	+1	known	p.Y508H	0.992	73	0%	93	50.5%	0	-	unknown(0)	-	-	NULL
SIRPA	140885	genome.wustl.edu	37	20	1915389	1915389	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001040022.1	+1	reviewed	p.E419*	1.000	317	0%	359	19.2%	6	16.6%	-	-	-	NULL
ZNF343	79175	genome.wustl.edu	37	20	2464241	2464241	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024325.4	-1	validated	p.E456K	0.005	175	0%	253	46.6%	8	37.5%	benign(0.023)	deleterious(0.03)	neutral(0.365)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF343	79175	genome.wustl.edu	37	20	2464657	2464657	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024325.4	-1	validated	p.R317I	0.030	112	0%	140	42.1%	4	25%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
TMC2	117532	genome.wustl.edu	37	20	2582895	2582895	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_080751.2	+1	validated	p.R454Q	1.000	322	0%	341	47.8%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
TMC2	117532	genome.wustl.edu	37	20	2597954	2597954	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_080751.2	+1	validated	p.F726S	1.000	73	0%	81	56.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
EBF4	57593	genome.wustl.edu	37	20	2730354	2730354	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001110514.1	+1	provisional	p.F278	1.000	4	0.000	14	0.714	23	4.3%	-	-	-	HMMPfam_TIG,HMMSmart_SM00429,superfamily_E set domains
PTPRA	5786	genome.wustl.edu	37	20	3007805	3007805	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002836.3	+1	reviewed	p.E583K	1.000	283	0%	418	17.5%	109	16.5%	probably_damaging(0.997)	tolerated(0.73)	neutral(0.468)	HMMPfam_Y_phosphatase,HMMSmart_PTPc,superfamily_SSF52799
UBOX5	22888	genome.wustl.edu	37	20	3102640	3102640	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014948.2	-1	validated	p.E215D	0.018	43	0%	31	25.8%	15	26.6%	benign(0.282)	tolerated(0.34)	neutral(0.109)	NULL
FASTKD5	60493	genome.wustl.edu	37	20	3128040	3128040	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021826.4	-1	validated	p.F559L	0.945	55	0%	89	38.2%	10	50%	benign(0.104)	tolerated(0.84)	neutral(0.009)	HMMPfam_FAST_2
MAVS	57506	genome.wustl.edu	37	20	3838294	3838294	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020746.3	+1	validated	p.A44P	0.994	70	0%	76	19.7%	24	12.5%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
PANK2	80025	genome.wustl.edu	37	20	3897637	3897637	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_153638.2	+1	reviewed	p.A492	0.009	200	0%	262	43.5%	18	50%	-	-	-	HMMPfam_Fumble,superfamily_Actin-like ATPase domain
RNF24	11237	genome.wustl.edu	37	20	3914790	3914790	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001134338.1	-1	reviewed	p.L144I	1.000	59	0%	48	14.6%	6	0%	benign(0.101)	tolerated(0.24)	neutral(0.045)	superfamily_RING/U-box
PRNP	5621	genome.wustl.edu	37	20	4680365	4680365	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000311.3	+1	reviewed	p.D167N	0.903	137	0%	193	40.4%	43	11.6%	benign(0)	tolerated(0.07)	neutral(0.319)	HMMPfam_Prion,HMMSmart_SM00157,superfamily_Prion-like
BMP2	650	genome.wustl.edu	37	20	6750883	6750883	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001200.2	+1	reviewed	p.S37L	0.041	8	0.000	27	0.556	0	-	benign(0.033)	tolerated(0.18)	neutral(0.058)	HMMPfam_TGFb_propeptide
HAO1	54363	genome.wustl.edu	37	20	7915243	7915243	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017545.2	-1	reviewed	p.E59D	0.005	51	0%	61	49.2%	0	-	benign(0)	tolerated(0.22)	neutral(0.042)	HMMPfam_FMN_dh,superfamily_FMN-linked oxidoreductases
PLCB4	5332	genome.wustl.edu	37	20	9360804	9360804	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000933.3	+1	reviewed	p.K283T	0.989	76	0%	104	41.3%	2	50%	benign(0.002)	tolerated(0.14)	neutral(0.249)	HMMPfam_efhand_like,superfamily_SSF47473
ANKRD5	63926	genome.wustl.edu	37	20	10036233	10036233	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_022096.4	+1	validated	p.F752	0.999	152	0%	201	43.8%	5	80%	-	-	-	NULL
SNAP25	6616	genome.wustl.edu	37	20	10256162	10256162	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003081.2	+1	reviewed	p.R8H	1.000	160	0%	239	41.8%	1	0%	probably_damaging(0.984)	deleterious(0.02)	deleterious(0.814)	NULL
BTBD3	22903	genome.wustl.edu	37	20	11903884	11903884	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014962.2	+1	validated	p.S380L	1.000	91	0%	107	50.5%	31	41.9%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_PHR
SEL1L2	80343	genome.wustl.edu	37	20	13912263	13912263	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_025229.1	-1	validated	p.R90I	0.178	295	0%	333	39%	0	-	possibly_damaging(0.688)	tolerated(0.3)	neutral(0.275)	NULL
FLRT3	23767	genome.wustl.edu	37	20	14306609	14306609	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_013281.2	-1	reviewed	p.R515Q	1.000	281	0%	309	46%	0	-	benign(0.049)	tolerated(0.38)	neutral(0.021)	NULL
FLRT3	23767	genome.wustl.edu	37	20	14306878	14306878	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_013281.2	-1	reviewed	p.I425	0.996	101	0%	108	50%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_FN3
MACROD2	140733	genome.wustl.edu	37	20	15866408	15866408	+	Splice_Site	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_080676.5	+1	validated	e10-1	1.000	231	0%	275	26.9%	0	-	-	-	-	-
KIF16B	55614	genome.wustl.edu	37	20	16485103	16485103	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024704.3	-1	validated	p.I364V	1.000	492	0%	621	15.3%	8	12.5%	unknown(0)	tolerated(0.87)	-	HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
KIF16B	55614	genome.wustl.edu	37	20	16493483	16493483	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024704.3	-1	validated	p.R145Q	1.000	134	0%	188	36.2%	1	0%	unknown(0)	deleterious(0.03)	-	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
PCSK2	5126	genome.wustl.edu	37	20	17208043	17208043	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002594.2	+1	reviewed	p.T31	1.000	215	0%	279	42.7%	0	-	-	-	-	superfamily_Protease propeptides/inhibitors
BFSP1	631	genome.wustl.edu	37	20	17492714	17492714	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001195.3	-1	reviewed	e4-1	1.000	220	0%	264	49.6%	0	-	-	-	-	-
RRBP1	6238	genome.wustl.edu	37	20	17606198	17606198	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001042576.1	-1	reviewed	p.E572K	0.567	136	0%	194	43.8%	364	36.2%	benign(0.122)	tolerated(0.44)	neutral(0.022)	NULL
CSRP2BP	57325	genome.wustl.edu	37	20	18165371	18165371	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020536.4	+1	reviewed	p.L704	1.000	331	0%	399	44.9%	11	54.5%	-	-	-	HMMPfam_Acetyltransf_1,superfamily_Acyl_CoA_acyltransferase
DZANK1	55184	genome.wustl.edu	37	20	18374413	18374413	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001099407.1	-1	validated	p.I584T	0.001	266	0%	287	40.8%	0	-	benign(0.122)	tolerated(0.68)	neutral(0.012)	NULL
DZANK1	55184	genome.wustl.edu	37	20	18435901	18435901	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001099407.1	-1	validated	p.S123Y	0.893	272	0%	341	46.3%	0	-	benign(0.082)	tolerated(1)	neutral(0.006)	NULL
SLC24A3	57419	genome.wustl.edu	37	20	19665995	19665995	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020689.3	+1	validated	p.F438	0.991	232	0%	278	41%	9	22.2%	-	-	-	NULL
RIN2	54453	genome.wustl.edu	37	20	19972897	19972897	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018993.2	+1	reviewed	p.I718	0.104	161	0%	266	15.4%	46	15.2%	-	-	-	HMMPfam_VPS9,HMMSmart_SM00167,superfamily_VPS9 domain (Pfam 02204)
CRNKL1	51340	genome.wustl.edu	37	20	20033141	20033141	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016652.4	-1	reviewed	p.A110V	0.018	46	0%	75	46.7%	0	-	benign(0.021)	-	-	NULL
RALGAPA2	57186	genome.wustl.edu	37	20	20582482	20582482	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020343.2	-1	validated	p.L683I	0.469	54	0%	80	46.3%	8	62.5%	benign(0.002)	tolerated(0.51)	neutral(0.009)	NULL
GZF1	64412	genome.wustl.edu	37	20	23346166	23346166	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_022482.3	+1	validated	p.C382	0.334	17	0%	15	53.3%	22	31.8%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
CSTL1	128817	genome.wustl.edu	37	20	23421092	23421092	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_138283.1	+1	reviewed	p.R63Q	0.000	168	0%	228	12.7%	0	-	benign(0.012)	tolerated(0.23)	neutral(0.042)	HMMPfam_Cystatin,HMMSmart_CY,superfamily_SSF54403
ACSS1	84532	genome.wustl.edu	37	20	24993545	24993545	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032501.2	-1	reviewed	p.R537Q	0.996	135	0%	144	45.1%	25	24%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
PYGB	5834	genome.wustl.edu	37	20	25255323	25255323	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002862.3	+1	reviewed	p.E208D	1.000	39	0%	84	41.7%	134	49.2%	benign(0)	deleterious(0.04)	neutral(0.349)	HMMPfam_Phosphorylase,superfamily_SSF53756
PYGB	5834	genome.wustl.edu	37	20	25257951	25257951	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002862.3	+1	reviewed	p.P282S	1.000	158	0%	167	46.7%	72	30.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Phosphorylase,superfamily_SSF53756
MYLK2	85366	genome.wustl.edu	37	20	30409383	30409383	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033118.3	+1	reviewed	p.K205N	1.000	107	0%	128	44.5%	0	-	benign(0.15)	tolerated(0.05)	neutral(0.358)	NULL
DUSP15	128853	genome.wustl.edu	37	20	30454957	30454957	+	Splice_Site	SNP	C	C	A	rs55788530		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_080611.3	-1	reviewed	e3-1	1.000	199	0.5%	254	50.4%	0	-	-	-	-	-
TTLL9	164395	genome.wustl.edu	37	20	30458964	30458964	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001008409.2	+1	provisional	p.G12D	0.001	204	0%	256	16%	0	-	probably_damaging(0.977)	-	-	NULL
KIF3B	9371	genome.wustl.edu	37	20	30898040	30898040	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004798.2	+1	reviewed	p.D154Y	1.000	56	0%	75	10.7%	6	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
ASXL1	171023	genome.wustl.edu	37	20	31017157	31017157	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015338.5	+1	reviewed	p.K163T	1.000	152	0%	197	43.1%	11	81.8%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
DNMT3B	1789	genome.wustl.edu	37	20	31383455	31383455	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006892.3	+1	reviewed	e11-1	1.000	151	0%	174	40.8%	0	-	-	-	-	-
EFCAB8	388795	genome.wustl.edu	37	20	31455519	31455519	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000440534	+1	known	p.E58D	0.813	156	0.6%	224	45.5%	0	-	possibly_damaging(0.736)	tolerated(0.09)	deleterious(0.566)	superfamily_EF-hand
SUN5	140732	genome.wustl.edu	37	20	31583513	31583513	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_080675.3	-1	validated	p.R149Q	0.018	148	0%	179	43.6%	0	-	possibly_damaging(0.819)	deleterious(0.04)	deleterious(0.658)	NULL
BPIFB4	149954	genome.wustl.edu	37	20	31692677	31692677	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_182519.2	+1	validated	p.N581S	0.948	275	0%	338	43.5%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_LBP_BPI_CETP_C,HMMSmart_SM00329,superfamily_Bactericidal permeability-increasing protein BPI
BPIFA1	51297	genome.wustl.edu	37	20	31828179	31828179	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016583.3	+1	reviewed	p.S190Y	0.033	96	0%	142	12%	0	-	possibly_damaging(0.513)	deleterious(0.01)	deleterious(0.578)	HMMPfam_LBP_BPI_CETP,superfamily_Bactericidal permeability-increasing protein BPI
PIGU	128869	genome.wustl.edu	37	20	33162944	33162944	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_080476.4	-1	reviewed	p.F386L	1.000	189	0%	240	33.8%	121	43.8%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_PIG-U
NCOA6	23054	genome.wustl.edu	37	20	33369981	33369981	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014071.2	-1	reviewed	p.D60Y	1.000	122	0%	154	44.2%	8	25%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
GDF5	8200	genome.wustl.edu	37	20	34022009	34022009	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000557.2	-1	reviewed	p.R402W	0.999	45	0%	58	44.8%	3	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TGF_beta,HMMSmart_TGFB,superfamily_SSF57501
C20orf152	140894	genome.wustl.edu	37	20	34575337	34575337	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_080834.1	+1	predicted	p.S246*	0.000	131	0%	144	41%	1	0%	-	-	-	superfamily_cNMP_binding
C20orf152	140894	genome.wustl.edu	37	20	34618394	34618394	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_080834.1	+1	predicted	p.P515S	0.096	211	0%	214	39.3%	0	-	benign(0.026)	tolerated(0.08)	neutral(0.301)	NULL
EPB41L1	2036	genome.wustl.edu	37	20	34797641	34797641	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012156.2	+1	reviewed	p.E634K	1.000	33	0%	52	44.2%	14	14.2%	probably_damaging(0.999)	tolerated(0.19)	deleterious(0.540)	NULL
DLGAP4	22839	genome.wustl.edu	37	20	35060360	35060360	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014902.4	+1	reviewed	p.F80	0.945	133	0%	170	38.2%	0	-	-	-	-	NULL
RPN2	6185	genome.wustl.edu	37	20	35838528	35838528	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002951.3	+1	reviewed	p.R316G	0.986	152	0%	169	37.9%	331	40.7%	possibly_damaging(0.597)	tolerated(0.6)	neutral(0.211)	HMMPfam_Ribophorin_II
MANBAL	63905	genome.wustl.edu	37	20	35944749	35944749	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001003897.1	+1	validated	p.T63	0.675	163	0%	198	44.4%	48	45.8%	-	-	-	HMMPfam_UPF0239
CTNNBL1	56259	genome.wustl.edu	37	20	36406090	36406090	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_030877.3	+1	reviewed	p.I286	1.000	531	0%	617	47%	30	53.3%	-	-	-	superfamily_ARM repeat
TTI1	9675	genome.wustl.edu	37	20	36640800	36640800	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014657.1	-1	predicted	p.R473	1.000	57	0%	71	54.9%	7	71.4%	-	-	-	superfamily_ARM-type_fold
TGM2	7052	genome.wustl.edu	37	20	36776424	36776424	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004613.2	-1	reviewed	p.A207V	0.000	41	0%	56	55.4%	51	9.8%	possibly_damaging(0.615)	deleterious(0.01)	deleterious(0.619)	superfamily_Cysteine proteinases
KIAA1755	85449	genome.wustl.edu	37	20	36870103	36870103	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001029864.1	-1	predicted	p.L144I	0.647	147	0%	190	34.2%	0	-	benign(0.032)	tolerated(0.67)	neutral(0.004)	NULL
SLC32A1	140679	genome.wustl.edu	37	20	37356207	37356207	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_080552.2	+1	reviewed	p.A168V	1.000	31	0%	59	32.2%	0	-	benign(0.01)	tolerated(0.2)	neutral(0.050)	HMMPfam_Aa_trans
SLC32A1	140679	genome.wustl.edu	37	20	37356601	37356601	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_080552.2	+1	reviewed	p.F299L	1.000	32	0%	53	39.6%	2	100%	benign(0.002)	tolerated(0.17)	neutral(0.059)	HMMPfam_Aa_trans
ACTR5	79913	genome.wustl.edu	37	20	37400443	37400443	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024855.3	+1	validated	p.A603V	0.029	26	0%	29	34.5%	35	60%	unknown(0)	tolerated(0.2)	-	NULL
TOP1	7150	genome.wustl.edu	37	20	39721205	39721205	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003286.2	+1	reviewed	p.E236D	1.000	469	0%	600	46.8%	10	50%	benign(0)	tolerated(0.6)	neutral(0.004)	HMMPfam_Topoisom_I_N,superfamily_Eukaryotic DNA topoisomerase I N-terminal DNA-binding fragment
TOP1	7150	genome.wustl.edu	37	20	39741481	39741481	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003286.2	+1	reviewed	p.K456N	0.998	166	0%	192	42.7%	80	40%	benign(0.015)	tolerated(0.07)	neutral(0.320)	superfamily_DNA breaking-rejoining enzymes,HMMSmart_SM00435,HMMPfam_Topoisom_I
PLCG1	5335	genome.wustl.edu	37	20	39802889	39802889	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002660.2	+1	reviewed	p.P1257	0.098	47	2.1%	50	34%	54	50%	-	-	-	NULL
CHD6	84181	genome.wustl.edu	37	20	40085988	40085988	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032221.3	-1	reviewed	p.R915	0.994	156	0%	197	46.7%	21	38%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
CHD6	84181	genome.wustl.edu	37	20	40112045	40112045	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032221.3	-1	reviewed	p.L791R	1.000	167	0%	216	42.1%	26	61.5%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_P-loop containing nucleoside triphosphate hydrolases
SRSF6	6431	genome.wustl.edu	37	20	42086703	42086703	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006275.5	+1	reviewed	p.S10R	1.000	41	0%	56	44.6%	79	37.9%	probably_damaging(0.995)	deleterious(0.05)	deleterious(0.803)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
IFT52	51098	genome.wustl.edu	37	20	42223366	42223366	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016004.2	+1	validated	p.L10I	0.996	213	0%	225	13.3%	7	14.2%	benign(0.002)	tolerated(0.34)	neutral(0.023)	NULL
TTPAL	79183	genome.wustl.edu	37	20	43108748	43108748	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001039199.1	+1	validated	p.E37*	0.903	107	0.9%	147	15%	0	-	-	-	-	HMMPfam_CRAL_TRIO_N,superfamily_Sec14p_like_N
PABPC1L	80336	genome.wustl.edu	37	20	43541323	43541323	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001124756.1	+1	provisional	p.M72I	1.000	84	0%	122	32%	7	42.8%	possibly_damaging(0.857)	deleterious(0.01)	deleterious(0.737)	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928
KCNS1	3787	genome.wustl.edu	37	20	43723527	43723527	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002251.3	-1	reviewed	p.H522R	0.000	130	0%	157	40.8%	0	-	benign(0)	tolerated(0.07)	neutral(0.319)	NULL
SEMG2	6407	genome.wustl.edu	37	20	43851577	43851577	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003008.2	+1	reviewed	p.S435Y	0.002	137	0%	159	45.9%	0	-	probably_damaging(0.981)	tolerated(0.15)	deleterious(0.666)	HMMPfam_Semenogelin
RBPJL	11317	genome.wustl.edu	37	20	43942725	43942725	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014276.2	+1	reviewed	p.R270C	1.000	28	0%	46	43.5%	0	-	benign(0.034)	tolerated(0.07)	neutral(0.321)	HMMPfam_Beta-trefoil,superfamily_Beta-trefoil
SYS1	90196	genome.wustl.edu	37	20	43995677	43995677	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033542.2	+1	validated	p.A131	0.995	117	0%	158	51.9%	77	36.3%	-	-	-	HMMPfam_SYS1
TP53TG5	27296	genome.wustl.edu	37	20	44004138	44004138	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014477.2	-1	validated	p.I103	0.000	156	0.6%	238	45%	0	-	-	-	-	NULL
WFDC3	140686	genome.wustl.edu	37	20	44404177	44404177	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_080614.1	-1	reviewed	p.E186D	0.760	255	0%	332	44.9%	2	0%	probably_damaging(0.979)	tolerated(0.45)	neutral(0.434)	HMMPfam_WAP,HMMSmart_WAP,superfamily_WAP,PatternScan_4_DISULFIDE_CORE
ZNF335	63925	genome.wustl.edu	37	20	44587995	44587995	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_022095.3	-1	reviewed	p.R700*	1.000	31	0%	40	57.5%	39	35.8%	-	-	-	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
MMP9	4318	genome.wustl.edu	37	20	44641109	44641109	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004994.2	+1	reviewed	p.A406	0.229	60	0%	93	45.2%	2	50%	-	-	-	"HMMPfam_Peptidase_M10,HMMSmart_SM00235,superfamily_Metalloproteases (""zincins"") catalytic domain"
ZNF840	100130863	genome.wustl.edu	37	20	45092916	45092916	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_001722110.1	+1	model	p.L117I	0.999	72	0%	62	32.3%	0	-	-	-	-	NULL
ZNF334	55713	genome.wustl.edu	37	20	45131589	45131589	+	Missense_Mutation	SNP	C	C	A	rs6011974	byCluster;byFrequency	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018102.3	-1	validated	p.R130I	0.002	342	0%	434	44.7%	0	-	possibly_damaging(0.861)	tolerated(0.22)	neutral(0.375)	NULL
EYA2	2139	genome.wustl.edu	37	20	45633621	45633621	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005244.4	+1	reviewed	p.M66V	1.000	116	0%	167	18%	648	15.1%	possibly_damaging(0.612)	deleterious(0)	deleterious(0.656)	NULL
ZMYND8	23613	genome.wustl.edu	37	20	45878145	45878145	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_183047.1	-1	reviewed	p.E554K	1.000	159	1.3%	214	35%	36	44.4%	probably_damaging(0.994)	deleterious(0.05)	deleterious(0.797)	NULL
ZMYND8	23613	genome.wustl.edu	37	20	45912344	45912344	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_183047.1	-1	reviewed	p.K285E	1.000	273	0%	296	25.3%	32	37.5%	probably_damaging(0.995)	tolerated(0.06)	deleterious(0.780)	superfamily_Bromodomain
NCOA3	8202	genome.wustl.edu	37	20	46262820	46262820	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_181659.2	+1	reviewed	p.P331	0.003	191	0%	225	40.9%	10	30%	-	-	-	superfamily_PYP-like sensor domain (PAS domain)
ARFGEF2	10564	genome.wustl.edu	37	20	47645144	47645144	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006420.2	+1	reviewed	p.R1668*	1.000	248	0%	276	42%	5	20%	-	-	-	NULL
CSE1L	1434	genome.wustl.edu	37	20	47688950	47688950	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001316.2	+1	reviewed	p.N299T	1.000	254	0%	345	46.4%	13	61.5%	benign(0)	tolerated(1)	-	HMMPfam_Cse1,superfamily_ARM repeat
CSE1L	1434	genome.wustl.edu	37	20	47700588	47700588	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001316.2	+1	reviewed	p.S503L	1.000	327	0%	438	44.7%	24	41.6%	benign(0.003)	tolerated(0.14)	neutral(0.249)	HMMPfam_Cse1,superfamily_ARM repeat
DDX27	55661	genome.wustl.edu	37	20	47839533	47839533	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017895.7	+1	reviewed	p.R125*	1.000	285	0%	348	42%	6	0%	-	-	-	NULL
DDX27	55661	genome.wustl.edu	37	20	47846795	47846795	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017895.7	+1	reviewed	p.A345T	1.000	76	0%	93	37.6%	57	8.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
ZNFX1	57169	genome.wustl.edu	37	20	47887209	47887209	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021035.2	-1	validated	p.F380	1.000	186	0%	186	46.2%	3	33.3%	-	-	-	NULL
ADNP	23394	genome.wustl.edu	37	20	49509856	49509856	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015339.2	-1	reviewed	p.F465	1.000	205	0.5%	269	45.4%	15	53.3%	-	-	-	HMMSmart_ZnF_C2H2
DPM1	8813	genome.wustl.edu	37	20	49551705	49551705	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003859.1	-1	reviewed	p.F249L	1.000	210	0.5%	237	46%	8	37.5%	probably_damaging(0.978)	tolerated(0.06)	deleterious(0.743)	superfamily_Nucleotide-diphospho-sugar transferases
DPM1	8813	genome.wustl.edu	37	20	49562280	49562280	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003859.1	-1	reviewed	p.F131C	1.000	199	0%	243	16.5%	10	20%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Glycos_transf_2,superfamily_Nucleotide-diphospho-sugar transferases
SALL4	57167	genome.wustl.edu	37	20	50406958	50406958	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020436.3	-1	reviewed	p.I688	0.000	41	0%	56	44.6%	0	-	-	-	-	NULL
SALL4	57167	genome.wustl.edu	37	20	50407086	50407086	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020436.3	-1	reviewed	p.R646W	1.000	54	0%	81	43.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2
SALL4	57167	genome.wustl.edu	37	20	50408611	50408611	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020436.3	-1	reviewed	p.G137	0.000	109	0%	101	45.5%	1	0%	-	-	-	NULL
ZNF217	7764	genome.wustl.edu	37	20	52198390	52198390	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006526.2	-1	validated	p.D326N	0.991	245	0%	283	12.7%	12	25%	probably_damaging(0.991)	deleterious(0.04)	deleterious(0.793)	NULL
CASS4	57091	genome.wustl.edu	37	20	55027495	55027495	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020356.3	+1	validated	p.S421	0.000	72	0%	128	51.6%	0	-	-	-	-	NULL
GCNT7	140687	genome.wustl.edu	37	20	55070309	55070309	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000243913	-1	known	p.R217*	1.000	229	0%	254	33.5%	0	-	-	-	-	NULL
GCNT7	140687	genome.wustl.edu	37	20	55071912	55071912	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000243913	-1	known	p.F129	0.000	185	0%	234	44.4%	1	0%	-	-	-	HMMPfam_Branch
RAE1	8480	genome.wustl.edu	37	20	55940431	55940431	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001015885.1	+1	reviewed	p.T103M	1.000	90	0%	112	42.9%	52	40.3%	possibly_damaging(0.732)	tolerated(0.18)	neutral(0.324)	HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40
CTCFL	140690	genome.wustl.edu	37	20	56090826	56090826	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_080618.2	-1	reviewed	p.C375Y	1.000	201	0%	247	38.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ANKRD60	140731	genome.wustl.edu	37	20	56793575	56793575	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000371167	-1	known	p.E334*	0.029	121	0%	176	51.7%	0	-	benign(0.025)	deleterious(0.01)	neutral(0.407)	NULL
NPEPL1	79716	genome.wustl.edu	37	20	57276178	57276178	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024663.3	+1	validated	p.I262	1.000	51	0%	73	42.5%	25	56%	-	-	-	HMMPfam_Peptidase_M17,superfamily_Zn-dependent exopeptidases
NPEPL1	79716	genome.wustl.edu	37	20	57288656	57288656	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000371137	+1	known	p.L394	0.001	15	0%	21	33.3%	2	0%	-	-	-	NULL
ZNF831	128611	genome.wustl.edu	37	20	57768534	57768534	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_178457.1	+1	provisional	p.S820	0.023	64	0%	64	51.6%	0	-	-	-	-	NULL
ZNF831	128611	genome.wustl.edu	37	20	57829144	57829144	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_178457.1	+1	provisional	p.D1460E	0.000	87	0%	100	11%	0	-	probably_damaging(0.996)	deleterious(0.03)	deleterious(0.826)	NULL
CDH26	60437	genome.wustl.edu	37	20	58547124	58547124	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_177980.2	+1	reviewed	p.N113	0.011	353	0%	425	42.8%	0	-	-	-	-	HMMSmart_CA,superfamily_Cadherin
LSM14B	149986	genome.wustl.edu	37	20	60705677	60705677	+	Silent	SNP	C	C	T	rs144046063	by1000genomes	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_144703.2	+1	validated	p.F255	1.000	242	0%	291	37.5%	51	37.2%	-	-	-	HMMPfam_DFDF
LAMA5	3911	genome.wustl.edu	37	20	60892829	60892829	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005560.3	-1	reviewed	p.R2415	0.884	57	0%	63	41.3%	42	40.4%	-	-	-	HMMPfam_Laminin_I
NTSR1	4923	genome.wustl.edu	37	20	61340837	61340837	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002531.2	+1	reviewed	p.S93L	0.086	15	0%	28	35.7%	0	-	probably_damaging(0.969)	deleterious(0.01)	deleterious(0.817)	HMMPfam_7tm_1,superfamily_SSF81321
DIDO1	11083	genome.wustl.edu	37	20	61511641	61511641	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033081.1	-1	reviewed	p.F1889	0.860	13	0%	14	35.7%	2	50%	-	-	-	NULL
DIDO1	11083	genome.wustl.edu	37	20	61513207	61513207	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033081.1	-1	reviewed	p.F1367	0.878	138	0%	157	42%	14	50%	-	-	-	NULL
SLC17A9	63910	genome.wustl.edu	37	20	61588222	61588222	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_022082.3	+1	validated	p.F55	0.994	36	0%	57	42.1%	13	53.8%	-	-	-	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
NKAIN4	128414	genome.wustl.edu	37	20	61878933	61878933	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152864.3	-1	validated	p.I156	0.722	22	0%	34	55.9%	1	100%	-	-	-	HMMPfam_NKAIN
COL20A1	57642	genome.wustl.edu	37	20	61936860	61936860	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020882.2	+1	validated	p.I95	0.998	48	0%	52	44.2%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
KCNQ2	3785	genome.wustl.edu	37	20	62039859	62039859	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_172107.2	-1	reviewed	p.A598	0.000	18	0%	35	48.6%	0	-	-	-	-	HMMPfam_KCNQ_channel
EEF1A2	1917	genome.wustl.edu	37	20	62129188	62129188	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001958.2	-1	reviewed	e1-1	0.008	19	0%	44	18.2%	0	-	-	-	-	-
RTEL1	51750	genome.wustl.edu	37	20	62319327	62319327	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032957.3	+1	reviewed	p.D507N	0.976	67	0%	61	49.2%	15	33.3%	benign(0.004)	tolerated(0.21)	neutral(0.044)	NULL
PRPF6	24148	genome.wustl.edu	37	20	62642793	62642793	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012469.3	+1	reviewed	p.I487	0.385	42	0%	59	47.5%	531	42.5%	-	-	-	superfamily_SSF48452
PRPF6	24148	genome.wustl.edu	37	20	62654211	62654211	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012469.3	+1	reviewed	p.F583	0.795	84	0%	87	18.4%	364	15.6%	-	-	-	HMMSmart_HAT,superfamily_SSF48452
MYT1	4661	genome.wustl.edu	37	20	62830252	62830252	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004535.2	+1	reviewed	p.R13Q	0.920	126	0%	150	47.3%	0	-	probably_damaging(0.981)	deleterious(0.02)	deleterious(0.808)	NULL
MYT1	4661	genome.wustl.edu	37	20	62839410	62839410	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004535.2	+1	reviewed	p.E287D	0.020	31	0%	35	31.4%	0	-	benign(0.001)	tolerated(0.57)	neutral(0.006)	NULL
TPTE	7179	genome.wustl.edu	37	21	10941920	10941920	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_199261.2	-1	validated	p.R261S	1.000	371	0.3%	412	30.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_(Phosphotyrosine protein) phosphatases II
LOC100288017	100288017	genome.wustl.edu	37	21	14568560	14568560	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_002343737.1	+1	model	p.D65Y	0.014	11	0%	28	46.4%	0	-	-	-	-	NULL
LOC100288017	100288017	genome.wustl.edu	37	21	14568591	14568591	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_002343737.1	+1	model	p.T75M	0.030	9	0.000	21	0.381	0	-	-	-	-	NULL
ENSG00000240615	0	genome.wustl.edu	37	21	15309912	15309912	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000400582	-1	novel	NULL	0.055	16	0%	33	48.5%	0	-	-	-	-	-
HSPA13	6782	genome.wustl.edu	37	21	15748027	15748027	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006948.4	-1	reviewed	p.D232Y	1.000	157	0%	196	39.8%	8	37.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HSP70,PatternScan_HSP70_2,superfamily_Actin-like ATPase domain
NRIP1	8204	genome.wustl.edu	37	21	16339046	16339046	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003489.3	-1	reviewed	p.S490P	0.890	529	0%	599	41.7%	12	75%	probably_damaging(0.959)	tolerated(0.07)	deleterious(0.722)	NULL
USP25	29761	genome.wustl.edu	37	21	17196404	17196404	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_013396.3	+1	validated	p.R376K	1.000	358	0%	423	37.8%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_UCH,superfamily_Cysteine proteinases
CXADR	1525	genome.wustl.edu	37	21	18933124	18933124	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001338.3	+1	reviewed	p.R226C	0.004	484	0%	610	47.2%	40	32.5%	possibly_damaging(0.455)	tolerated(0.05)	deleterious(0.494)	HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
C21orf91	54149	genome.wustl.edu	37	21	19165892	19165892	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001100420.1	-1	validated	p.F245C	1.000	131	0%	190	51.1%	18	44.4%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_EURL
CHODL	140578	genome.wustl.edu	37	21	19628887	19628887	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024944.2	+1	reviewed	p.E47D	0.969	73	0%	85	40%	2	0%	benign(0)	tolerated(1)	-	HMMSmart_SM00034,superfamily_C-type lectin-like
NCAM2	4685	genome.wustl.edu	37	21	22370919	22370919	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004540.2	+1	reviewed	p.L13R	1.000	331	0%	473	44.4%	0	-	possibly_damaging(0.641)	deleterious(0.02)	deleterious(0.608)	NULL
NCAM2	4685	genome.wustl.edu	37	21	22710752	22710752	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004540.2	+1	reviewed	p.E314D	1.000	103	0%	124	20.2%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMSmart_IGc2,superfamily_SSF48726
NCAM2	4685	genome.wustl.edu	37	21	22746243	22746243	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004540.2	+1	reviewed	p.D369Y	1.000	236	0%	300	39.7%	0	-	possibly_damaging(0.719)	tolerated(1)	neutral(0.261)	HMMSmart_IGc2,HMMPfam_ig,superfamily_SSF48726
NCAM2	4685	genome.wustl.edu	37	21	22790868	22790868	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004540.2	+1	reviewed	p.E487*	1.000	194	0.5%	267	50.9%	0	-	-	-	-	superfamily_SSF48726
NCAM2	4685	genome.wustl.edu	37	21	22906908	22906908	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004540.2	+1	reviewed	p.R778I	1.000	300	0%	402	43%	0	-	benign(0.208)	tolerated(0.12)	neutral(0.281)	NULL
JAM2	58494	genome.wustl.edu	37	21	27078323	27078323	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021219.2	+1	reviewed	p.V244I	0.099	395	1%	572	40.7%	5	40%	possibly_damaging(0.844)	tolerated(0.05)	deleterious(0.669)	NULL
ADAMTS5	11096	genome.wustl.edu	37	21	28307044	28307044	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007038.3	-1	reviewed	p.R477Q	0.717	103	0%	171	47.4%	1	0%	benign(0.037)	tolerated(0.65)	neutral(0.005)	NULL
N6AMT1	29104	genome.wustl.edu	37	21	30248811	30248811	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_013240.3	-1	reviewed	p.E181*	1.000	257	0%	311	43.4%	2	50%	-	-	-	HMMPfam_MTS,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
LTN1	26046	genome.wustl.edu	37	21	30339387	30339387	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015565.2	-1	validated	p.D476Y	0.998	357	0%	396	42.2%	2	0%	probably_damaging(0.999)	tolerated(0.22)	deleterious(0.532)	superfamily_ARM repeat
GRIK1	2897	genome.wustl.edu	37	21	30959775	30959775	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000830.3	-1	reviewed	p.F568L	1.000	114	0%	178	37.1%	0	-	probably_damaging(0.983)	deleterious(0)	deleterious(0.873)	HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II
GRIK1	2897	genome.wustl.edu	37	21	31311717	31311717	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000830.3	-1	reviewed	p.P34	1.000	103	0%	158	46.2%	0	-	-	-	-	superfamily_Periplasmic binding protein-like I
KRTAP24-1	643803	genome.wustl.edu	37	21	31654771	31654771	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001085455.1	-1	validated	p.K160N	0.054	173	0%	277	41.2%	0	-	possibly_damaging(0.45)	-	-	HMMPfam_PMG
KRTAP13-2	337959	genome.wustl.edu	37	21	31744236	31744236	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_181621.3	-1	validated	p.S99Y	0.017	156	0%	198	27.3%	0	-	benign(0.011)	deleterious(0.01)	neutral(0.406)	HMMPfam_PMG
KRTAP11-1	337880	genome.wustl.edu	37	21	32253795	32253795	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_175858.2	-1	validated	p.G17*	0.872	50	0%	73	56.2%	0	-	-	-	-	HMMPfam_PMG
SCAF4	57466	genome.wustl.edu	37	21	33065741	33065741	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020706.2	-1	reviewed	p.R460Q	1.000	105	0%	174	44.8%	13	53.8%	unknown(0)	deleterious(0.01)	-	NULL
SCAF4	57466	genome.wustl.edu	37	21	33066602	33066602	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020706.2	-1	reviewed	p.E413*	1.000	197	0%	216	39.8%	13	0%	-	-	-	NULL
HUNK	30811	genome.wustl.edu	37	21	33371060	33371060	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014586.1	+1	validated	p.H570Y	0.985	55	0%	65	50.8%	0	-	benign(0.069)	deleterious(0.02)	neutral(0.388)	NULL
URB1	9875	genome.wustl.edu	37	21	33694188	33694188	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014825.2	-1	validated	p.E1803K	0.978	70	0%	67	34.3%	68	39.7%	possibly_damaging(0.455)	tolerated(0.32)	neutral(0.173)	superfamily_ARM repeat
URB1	9875	genome.wustl.edu	37	21	33697681	33697681	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014825.2	-1	validated	p.R1660Q	0.913	165	0%	154	45.5%	15	33.3%	possibly_damaging(0.482)	tolerated(0.34)	neutral(0.183)	superfamily_ARM repeat
URB1	9875	genome.wustl.edu	37	21	33705706	33705706	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014825.2	-1	validated	p.K1627R	0.003	71	0%	117	41.9%	52	46.1%	benign(0.002)	tolerated(0.28)	neutral(0.032)	superfamily_ARM repeat
URB1	9875	genome.wustl.edu	37	21	33755832	33755832	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014825.2	-1	validated	p.A156T	0.996	46	0%	72	38.9%	23	60.8%	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	NULL
C21orf63	59271	genome.wustl.edu	37	21	33876260	33876260	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_058187.3	+1	validated	p.S295L	0.035	188	0%	267	49.1%	9	77.7%	benign(0.357)	deleterious(0.02)	deleterious(0.496)	NULL
GCFC1	94104	genome.wustl.edu	37	21	34107338	34107338	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016631.3	-1	reviewed	p.R893*	1.000	178	0%	293	50.5%	11	27.2%	-	-	-	NULL
GCFC1	94104	genome.wustl.edu	37	21	34117904	34117904	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016631.3	-1	reviewed	p.V683	1.000	252	0%	311	19.3%	23	8.6%	-	-	-	HMMPfam_GCFC
GCFC1	94104	genome.wustl.edu	37	21	34131532	34131532	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016631.3	-1	reviewed	p.E414D	1.000	363	0%	473	19.5%	2	0%	benign(0.03)	tolerated(0.13)	neutral(0.254)	HMMPfam_GCFC
IL10RB	3588	genome.wustl.edu	37	21	34655474	34655474	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000628.3	+1	reviewed	p.R192*	0.994	262	0%	386	17.6%	45	2.2%	-	-	-	HMMSmart_FN3,superfamily_FN_III-like
DNAJC28	54943	genome.wustl.edu	37	21	34861116	34861116	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001040192.1	-1	validated	p.K195N	1.000	350	0%	404	40.1%	3	33.3%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
SON	6651	genome.wustl.edu	37	21	34921988	34921988	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_138927.1	+1	reviewed	p.E151*	1.000	90	0%	114	36.8%	4	0%	-	-	-	NULL
SON	6651	genome.wustl.edu	37	21	34924577	34924577	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_138927.1	+1	reviewed	p.E1014K	0.990	159	0%	208	42.3%	34	32.3%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
SON	6651	genome.wustl.edu	37	21	34927188	34927188	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_138927.1	+1	reviewed	p.R1884I	1.000	82	0%	119	44.5%	23	34.7%	unknown(0)	deleterious(0)	-	NULL
DONSON	29980	genome.wustl.edu	37	21	34954503	34954503	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000437395	-1	known	p.R309K	0.702	466	0%	468	38.5%	5	100%	-	-	-	NULL
ITSN1	6453	genome.wustl.edu	37	21	35190612	35190612	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003024.2	+1	reviewed	p.P923	0.146	229	0%	244	41.8%	6	50%	-	-	-	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain
ITSN1	6453	genome.wustl.edu	37	21	35254583	35254583	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003024.2	+1	reviewed	p.P1460S	1.000	175	0%	234	29.9%	0	-	probably_damaging(0.975)	tolerated(0.09)	deleterious(0.714)	superfamily_PH domain-like
RUNX1	861	genome.wustl.edu	37	21	36231773	36231773	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001754.4	-1	reviewed	p.R204Q	1.000	376	0%	510	46.9%	14	35.7%	probably_damaging(0.986)	deleterious(0)	deleterious(0.879)	superfamily_p53-like transcription factors,HMMPfam_Runt
RUNX1	861	genome.wustl.edu	37	21	36421162	36421162	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001754.4	-1	reviewed	p.S12L	0.995	125	0%	138	43.5%	0	-	benign(0)	deleterious(0)	neutral(0.445)	NULL
SETD4	54093	genome.wustl.edu	37	21	37431146	37431146	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017438.3	-1	validated	p.R14Q	0.874	527	0%	633	40.8%	8	25%	probably_damaging(0.962)	tolerated(0.07)	deleterious(0.724)	NULL
SIM2	6493	genome.wustl.edu	37	21	38095375	38095375	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005069.3	+1	reviewed	p.R163*	0.998	148	0%	203	24.1%	6	0%	-	-	-	NULL
ERG	2078	genome.wustl.edu	37	21	39762950	39762950	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001136154.1	-1	validated	p.L303I	1.000	250	0%	301	43.9%	2	0%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
BRWD1	54014	genome.wustl.edu	37	21	40569206	40569206	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018963.3	-1	reviewed	p.R1930I	0.998	76	0%	123	29.3%	9	55.5%	possibly_damaging(0.906)	deleterious(0)	deleterious(0.804)	superfamily_WD40 repeat-like
B3GALT5	10317	genome.wustl.edu	37	21	41032838	41032838	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006057.1	+1	reviewed	p.D118N	1.000	97	0%	145	42.1%	3	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Galactosyl_T
DSCAM	1826	genome.wustl.edu	37	21	41741037	41741037	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001389.3	-1	validated	p.L215R	1.000	111	0%	131	40.5%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00409,superfamily_Immunoglobulin
MX2	4600	genome.wustl.edu	37	21	42752068	42752068	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002463.1	+1	reviewed	p.E189D	0.037	38	0%	68	35.3%	2	0%	possibly_damaging(0.944)	tolerated(0.24)	neutral(0.426)	HMMPfam_Dynamin_N,HMMSmart_DYNc,superfamily_SSF52540
MX1	4599	genome.wustl.edu	37	21	42817999	42817999	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001144925.1	+1	reviewed	p.R402W	0.435	174	1.1%	276	43.5%	5	40%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Dynamin_M
TMPRSS2	7113	genome.wustl.edu	37	21	42839756	42839756	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005656.3	-1	reviewed	p.D458N	1.000	189	0%	273	43.6%	38	39.4%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
ZNF295	49854	genome.wustl.edu	37	21	43413484	43413484	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001098402.1	-1	validated	p.L241	0.006	99	0%	107	36.4%	2	50%	-	-	-	NULL
ABCG1	9619	genome.wustl.edu	37	21	43708138	43708138	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000489035	+1	known	p.L107I	1.000	116	0%	128	47.7%	131	54.1%	-	-	-	NULL
ABCG1	9619	genome.wustl.edu	37	21	43710175	43710175	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004915.3	+1	reviewed	p.R426C	1.000	75	0%	115	27.8%	195	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ABC2_membrane
TMPRSS3	64699	genome.wustl.edu	37	21	43815480	43815480	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024022.2	-1	reviewed	p.R16Q	0.958	171	0%	233	16.3%	18	22.2%	possibly_damaging(0.786)	deleterious(0)	deleterious(0.739)	NULL
UBASH3A	53347	genome.wustl.edu	37	21	43846885	43846885	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018961.2	+1	validated	p.L376I	0.000	168	0%	199	46.2%	0	-	benign(0.001)	tolerated(0.31)	neutral(0.027)	NULL
SLC37A1	54020	genome.wustl.edu	37	21	43963651	43963651	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018964.3	+1	reviewed	p.F223	0.948	130	0%	181	45.3%	58	41.3%	-	-	-	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
SLC37A1	54020	genome.wustl.edu	37	21	43982238	43982238	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018964.3	+1	reviewed	p.Y344	0.999	368	0%	544	41%	53	37.7%	-	-	-	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
PDE9A	5152	genome.wustl.edu	37	21	44108058	44108058	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002606.2	+1	reviewed	p.D58N	1.000	58	0%	55	25.5%	76	25%	benign(0.001)	tolerated(0.14)	neutral(0.249)	NULL
PKNOX1	5316	genome.wustl.edu	37	21	44433267	44433267	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004571.3	+1	validated	p.I147	1.000	149	0%	219	35.6%	8	37.5%	-	-	-	NULL
PKNOX1	5316	genome.wustl.edu	37	21	44441437	44441437	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004571.3	+1	validated	p.L249I	0.996	91	0%	101	29.7%	37	40.5%	possibly_damaging(0.736)	tolerated(0.33)	neutral(0.293)	NULL
CRYAA	1409	genome.wustl.edu	37	21	44592189	44592189	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000394.2	+1	reviewed	p.H107	0.981	29	0%	28	32.1%	0	-	-	-	-	HMMPfam_HSP20,superfamily_HSP20-like chaperones
HSF2BP	11077	genome.wustl.edu	37	21	45053290	45053290	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007031.1	-1	reviewed	p.L102I	0.997	127	0%	161	37.9%	0	-	probably_damaging(0.973)	tolerated(0.08)	deleterious(0.715)	NULL
AGPAT3	56894	genome.wustl.edu	37	21	45391340	45391340	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001037553.1	+1	reviewed	p.G246R	0.999	135	0%	173	38.2%	25	24%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	NULL
PWP2	5822	genome.wustl.edu	37	21	45545905	45545905	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005049.2	+1	validated	p.R660Q	1.000	127	0%	112	23.2%	32	37.5%	probably_damaging(0.999)	tolerated(0.07)	deleterious(0.809)	superfamily_WD40_like
AIRE	326	genome.wustl.edu	37	21	45712895	45712895	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000383.2	+1	reviewed	p.S372L	0.001	42	0%	44	56.8%	0	-	benign(0.101)	deleterious(0.01)	neutral(0.413)	NULL
KRTAP10-4	386672	genome.wustl.edu	37	21	45993932	45993932	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_198687.1	+1	reviewed	p.C99	0.973	152	0%	198	20.7%	0	-	-	-	-	NULL
KRTAP10-7	386675	genome.wustl.edu	37	21	46021022	46021022	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000380102	+1	known	p.K167	0.005	219	0%	322	26.1%	1	0%	-	-	-	NULL
KRTAP10-10	353333	genome.wustl.edu	37	21	46057819	46057819	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_181688.1	+1	provisional	p.S162F	0.055	147	0%	246	39.4%	0	-	possibly_damaging(0.768)	deleterious(0.03)	deleterious(0.649)	NULL
KRTAP10-11	386678	genome.wustl.edu	37	21	46067269	46067269	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_198692.2	+1	validated	p.C298*	0.995	79	0%	118	44.1%	0	-	-	-	-	NULL
POFUT2	23275	genome.wustl.edu	37	21	46705593	46705593	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_133635.4	-1	validated	p.E128K	1.000	76	0%	79	53.2%	12	41.6%	probably_damaging(0.998)	tolerated(0.11)	deleterious(0.746)	HMMPfam_O-FucT
LINC00315	246704	genome.wustl.edu	37	21	46723206	46723206	+	RNA	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XR_041771.1	-1	model	NULL	0.000	43	0%	86	29.1%	0	-	-	-	-	-
COL18A1	80781	genome.wustl.edu	37	21	46913116	46913116	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_130444.2	+1	reviewed	p.E1167K	0.026	29	0%	28	42.9%	155	48.3%	possibly_damaging(0.606)	tolerated(0.29)	neutral(0.239)	HMMPfam_Collagen
PCBP3	54039	genome.wustl.edu	37	21	47329362	47329362	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020528.2	+1	reviewed	p.I145V	1.000	40	0%	65	40%	2	0%	probably_damaging(0.969)	deleterious(0)	deleterious(0.856)	HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I)
COL6A2	1292	genome.wustl.edu	37	21	47549147	47549147	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_058174.2	+1	reviewed	p.F833L	1.000	14	0%	27	44.4%	56	0%	possibly_damaging(0.767)	-	-	NULL
FTCD	10841	genome.wustl.edu	37	21	47571627	47571627	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006657.2	-1	reviewed	p.D161N	1.000	41	0%	44	47.7%	0	-	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	superfamily_Formiminotransferase domain of formiminotransferase-cyclodeaminase.,HMMPfam_FTCD_N
MCM3AP	8888	genome.wustl.edu	37	21	47678897	47678897	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003906.3	-1	reviewed	p.K1230N	0.751	61	0%	75	46.7%	20	70%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
PCNT	5116	genome.wustl.edu	37	21	47773947	47773947	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006031.5	+1	reviewed	p.D576Y	0.397	261	0%	341	43.1%	2	50%	possibly_damaging(0.578)	deleterious(0)	deleterious(0.643)	NULL
DIP2A	23181	genome.wustl.edu	37	21	47957421	47957421	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015151.3	+1	reviewed	p.L590	0.998	82	0%	79	13.9%	35	31.4%	-	-	-	superfamily_Acetyl-CoA synthetase-like
DIP2A	23181	genome.wustl.edu	37	21	47987490	47987490	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015151.3	+1	reviewed	p.F1557	1.000	55	0%	111	15.3%	38	13.1%	-	-	-	superfamily_Acetyl-CoA synthetase-like
OR11H1	81061	genome.wustl.edu	37	22	16448908	16448908	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001005239.1	-1	provisional	p.L299	0.991	396	0.3%	526	27.2%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
CECR2	27443	genome.wustl.edu	37	22	17983882	17983882	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000400573	+1	known	p.S213Y	0.952	109	0%	149	36.2%	0	-	possibly_damaging(0.46)	deleterious(0)	deleterious(0.596)	NULL
MICAL3	57553	genome.wustl.edu	37	22	18347630	18347630	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001136004.1	-1	provisional	p.R1004	0.994	34	0%	41	34.1%	3	66.6%	-	-	-	NULL
TUBA8	51807	genome.wustl.edu	37	22	18613739	18613739	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018943.1	+1	provisional	p.D396N	1.000	134	0%	132	21.2%	2	50%	possibly_damaging(0.95)	deleterious(0)	deleterious(0.838)	superfamily_Tubulin C-terminal domain-like
SLC25A1	6576	genome.wustl.edu	37	22	19164667	19164667	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005984.2	-1	validated	p.F164L	1.000	123	0%	149	36.2%	401	42.3%	benign(0.135)	tolerated(0.52)	neutral(0.020)	superfamily_Mitoch_carrier,HMMPfam_Mito_carr
CLTCL1	8218	genome.wustl.edu	37	22	19188972	19188972	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007098.3	-1	reviewed	p.Y1211	0.998	55	0%	68	39.7%	6	50%	-	-	-	HMMPfam_Clathrin,HMMSmart_SM00299,superfamily_ARM repeat
C22orf29	79680	genome.wustl.edu	37	22	19839610	19839610	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024627.5	-1	validated	p.R59*	0.000	32	0%	45	48.9%	26	38.4%	-	-	-	NULL
MED15	51586	genome.wustl.edu	37	22	20921089	20921089	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001003891.1	+1	reviewed	p.Q342	0.011	150	0%	218	52.8%	80	47.5%	-	-	-	NULL
FAM108A5P	729495	genome.wustl.edu	37	22	21022358	21022358	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_002343784.1	-1	model	p.K320N	1.000	37	0%	56	26.8%	30	0%	-	-	-	superfamily_alpha/beta-Hydrolases
SERPIND1	3053	genome.wustl.edu	37	22	21138370	21138370	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000185.3	+1	reviewed	p.A334T	1.000	109	0.9%	130	27.7%	0	-	probably_damaging(0.984)	tolerated(0.21)	deleterious(0.474)	HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins
PI4KA	5297	genome.wustl.edu	37	22	21174038	21174038	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_058004.2	-1	reviewed	p.R169Q	0.997	128	0.8%	218	45.4%	18	33.3%	benign(0.012)	tolerated(0.26)	neutral(0.035)	NULL
PI4KA	5297	genome.wustl.edu	37	22	21174829	21174829	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_058004.2	-1	reviewed	p.K118T	1.000	272	0.4%	335	38.8%	13	38.4%	benign(0.018)	tolerated(0.29)	neutral(0.030)	NULL
AIFM3	150209	genome.wustl.edu	37	22	21332253	21332253	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_144704.2	+1	validated	p.R479H	1.000	109	0%	168	30.4%	0	-	benign(0.017)	tolerated(0.13)	neutral(0.253)	superfamily_FAD/NAD(P)-binding domain
MIR649	693234	genome.wustl.edu	37	22	21388533	21388533	+	RNA	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000384843	-1	known	NULL	0.006	206	0%	246	48.4%	0	-	-	-	-	-
UBE2L3	7332	genome.wustl.edu	37	22	21922043	21922043	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003347.2	+1	reviewed	p.S4G	1.000	25	0%	38	39.5%	59	44%	benign(0.013)	-	-	superfamily_UBC-like
UBE2L3	7332	genome.wustl.edu	37	22	21975917	21975917	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003347.2	+1	reviewed	p.E142*	1.000	86	0%	102	37.3%	17	47%	-	-	-	HMMPfam_UQ_con,HMMSmart_SM00212,superfamily_UBC-like
PPM1F	9647	genome.wustl.edu	37	22	22287813	22287813	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014634.2	-1	reviewed	p.E233*	0.000	59	0%	50	46%	11	9%	-	-	-	HMMSmart_PP2C_SIG,HMMSmart_PP2Cc,superfamily_PP2C-related,HMMPfam_PP2C
IGLV3-22	28795	genome.wustl.edu	37	22	23047257	23047257	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000390307	+1	known	p.E99K	0.761	42	0%	73	43.8%	0	-	benign(0.024)	deleterious(0.04)	neutral(0.350)	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
ENSG00000207833	0	genome.wustl.edu	37	22	23135007	23135007	+	RNA	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000385098	+1	novel	NULL	0.001	35	0%	33	36.4%	0	-	-	-	-	-
IGLV3-10	28803	genome.wustl.edu	37	22	23154671	23154671	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000390315	+1	known	p.F80L	0.922	124	0%	127	42.5%	0	-	benign(0.402)	deleterious(0.01)	deleterious(0.534)	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
MIR650	723778	genome.wustl.edu	37	22	23165303	23165303	+	RNA	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000385101	+1	known	NULL	0.001	41	0%	34	47.1%	1	0%	-	-	-	-
IGLV4-3	28786	genome.wustl.edu	37	22	23214014	23214014	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000390318	+1	known	p.Q57H	0.601	45	0%	59	47.5%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
RTDR1	27156	genome.wustl.edu	37	22	23406298	23406298	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014433.2	-1	reviewed	p.I145	0.119	64	0%	74	41.9%	0	-	-	-	-	superfamily_ARM-type_fold
SLC2A11	66035	genome.wustl.edu	37	22	24226177	24226177	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000424247	+1	known	p.S114Y	0.997	75	0%	83	21.7%	19	5.2%	-	-	-	HMMPfam_Sugar_tr
GSTT2	2953	genome.wustl.edu	37	22	24324928	24324928	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000854.3	+1	validated	p.D104N	0.629	137	0%	182	44.5%	7	42.8%	possibly_damaging(0.577)	deleterious(0.04)	deleterious(0.547)	superfamily_Glutathione S-transferase (GST) C-terminal domain
SNRPD3	6634	genome.wustl.edu	37	22	24967898	24967898	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004175.3	+1	reviewed	p.R112G	1.000	208	0%	302	46.7%	193	57.5%	possibly_damaging(0.503)	tolerated(0.24)	neutral(0.206)	superfamily_Sm-like ribonucleoproteins
GGT1	2678	genome.wustl.edu	37	22	25007054	25007054	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001032364.2	+1	reviewed	p.K2N	1.000	48	0%	71	31%	10	70%	unknown(0)	deleterious(0.02)	-	NULL
GGT1	2678	genome.wustl.edu	37	22	25019101	25019101	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001032364.2	+1	reviewed	p.N254T	1.000	31	0%	41	41.5%	58	32.7%	benign(0.003)	tolerated(0.32)	neutral(0.024)	HMMPfam_G_glu_transpept
SGSM1	129049	genome.wustl.edu	37	22	25313695	25313695	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001039948.2	+1	validated	p.R1055H	1.000	245	0%	287	41.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p
MYO18B	84700	genome.wustl.edu	37	22	26306982	26306982	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032608.5	+1	reviewed	p.D1777N	1.000	155	0%	215	47.9%	0	-	probably_damaging(1)	tolerated(0.13)	deleterious(0.752)	NULL
HPS4	89781	genome.wustl.edu	37	22	26860650	26860650	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_022081.4	-1	reviewed	p.E316K	0.000	91	0%	111	42.3%	34	55.8%	benign(0.073)	tolerated(0.8)	neutral(0.005)	NULL
SRRD	402055	genome.wustl.edu	37	22	26880025	26880025	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001013694.2	+1	validated	p.S57P	0.494	12	0.000	8	0.875	2	50%	benign(0.005)	tolerated(0.15)	neutral(0.241)	NULL
TFIP11	24144	genome.wustl.edu	37	22	26888021	26888021	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001008697.1	-1	validated	p.W824*	1.000	70	0%	98	18.4%	141	22.6%	-	-	-	NULL
TFIP11	24144	genome.wustl.edu	37	22	26902798	26902798	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001008697.1	-1	validated	p.E102D	1.000	211	0%	265	49.1%	12	66.6%	benign(0)	tolerated(0.4)	neutral(0.016)	NULL
TPST2	8459	genome.wustl.edu	37	22	26928691	26928691	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001008566.1	-1	reviewed	p.K354	1.000	304	0%	309	42.1%	34	50%	-	-	-	NULL
TTC28	23331	genome.wustl.edu	37	22	28504084	28504084	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001145418.1	-1	validated	p.I583	0.652	73	0%	72	44.4%	15	26.6%	-	-	-	HMMPfam_TPR_1,HMMSmart_TPR,superfamily_SSF48452
CHEK2	11200	genome.wustl.edu	37	22	29106004	29106004	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001005735.1	-1	reviewed	p.K322T	0.997	202	0%	217	15.7%	1	0%	possibly_damaging(0.724)	tolerated(0.22)	neutral(0.305)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
ZNRF3	84133	genome.wustl.edu	37	22	29445469	29445469	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032173.2	+1	validated	p.G334S	0.968	26	0%	34	35.3%	12	33.3%	benign(0.048)	tolerated(0.94)	neutral(0.003)	NULL
RFPL1	5988	genome.wustl.edu	37	22	29837872	29837872	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021026.2	+1	validated	p.D239Y	0.000	278	0%	381	42%	0	-	possibly_damaging(0.887)	deleterious(0.05)	deleterious(0.692)	HMMPfam_SPRY,HMMSmart_SPRY
THOC5	8563	genome.wustl.edu	37	22	29945094	29945094	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001002877.1	-1	validated	p.R15*	1.000	326	0%	486	42%	12	33.3%	-	-	-	NULL
MTMR3	8897	genome.wustl.edu	37	22	30403266	30403266	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021090.3	+1	reviewed	p.R279*	0.993	39	0%	70	41.4%	18	22.2%	-	-	-	HMMPfam_Myotub-related,superfamily_(Phosphotyrosine protein) phosphatases II
LIF	3976	genome.wustl.edu	37	22	30639648	30639648	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002309.3	-1	reviewed	p.A201T	1.000	104	0%	144	42.4%	1	100%	probably_damaging(0.957)	deleterious(0)	deleterious(0.845)	HMMPfam_LIF_OSM,superfamily_4-helical cytokines
PES1	23481	genome.wustl.edu	37	22	30980688	30980688	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014303.2	-1	reviewed	p.D129N	1.000	33	0%	54	61.1%	290	43.4%	benign(0.135)	deleterious(0)	neutral(0.456)	HMMPfam_Pescadillo_N
MORC2	22880	genome.wustl.edu	37	22	31333006	31333006	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014941.1	-1	provisional	p.R444I	1.000	68	0%	86	40.7%	35	65.7%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_zf-CW
MORC2	22880	genome.wustl.edu	37	22	31335642	31335642	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014941.1	-1	provisional	p.D285N	0.998	77	0%	108	47.2%	41	51.2%	benign(0.389)	deleterious(0.03)	deleterious(0.489)	NULL
SMTN	6525	genome.wustl.edu	37	22	31491571	31491571	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_134270.1	+1	reviewed	p.R613C	0.997	71	0%	93	39.8%	54	25.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PATZ1	23598	genome.wustl.edu	37	22	31724799	31724799	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014323.2	-1	reviewed	p.H540R	1.000	68	0%	112	44.6%	11	0%	possibly_damaging(0.55)	tolerated(0.42)	neutral(0.201)	NULL
EIF4ENIF1	56478	genome.wustl.edu	37	22	31859673	31859673	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_019843.3	-1	reviewed	p.R193	0.993	50	0%	85	50.6%	6	83.3%	-	-	-	HMMPfam_EIF4E-T
SFI1	9814	genome.wustl.edu	37	22	31998724	31998724	+	Nonsense_Mutation	SNP	G	G	T	rs4339045		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000452250	+1	known	p.E293*	0.009	56	0%	73	45.2%	9	55.5%	benign(0.129)	tolerated(0.15)	neutral(0.252)	NULL
ENSG00000251232	0	genome.wustl.edu	37	22	32108164	32108164	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000422296	-1	known	p.F19S	0.998	125	0%	133	30.8%	13	23%	-	-	-	NULL
PRR14L	253143	genome.wustl.edu	37	22	32111241	32111241	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_173566.2	-1	validated	p.E862*	0.018	329	0%	437	38.2%	6	33.3%	-	-	-	NULL
SLC5A1	6523	genome.wustl.edu	37	22	32506119	32506119	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000343.3	+1	reviewed	p.K638N	0.995	349	0%	455	45.1%	4	25%	benign(0.001)	tolerated(0.64)	neutral(0.003)	NULL
RFPL3	10738	genome.wustl.edu	37	22	32756598	32756598	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001098535.1	+1	validated	p.V245L	0.298	282	0.7%	372	48.9%	0	-	benign(0.062)	deleterious(0.01)	neutral(0.410)	HMMPfam_SPRY,HMMSmart_SPRY
C22orf28	51493	genome.wustl.edu	37	22	32788330	32788330	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014306.4	-1	validated	p.R436Q	1.000	150	0%	198	45.5%	203	52.2%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_UPF0027,superfamily_Hypothetical protein PH1602
BPIFC	254240	genome.wustl.edu	37	22	32849444	32849444	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_174932.2	-1	validated	p.K57N	0.000	369	0%	343	45.8%	0	-	benign(0.002)	tolerated(0.29)	neutral(0.029)	HMMPfam_LBP_BPI_CETP,HMMSmart_BPI1,superfamily_Bactericidal_perm-incr_a/b_dom,PatternScan_LBP_BPI_CETP
FBXO7	25793	genome.wustl.edu	37	22	32894169	32894169	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012179.3	+1	reviewed	p.P407	0.940	117	0%	190	50%	104	32.6%	-	-	-	superfamily_SSF81383
HMGXB4	10042	genome.wustl.edu	37	22	35681992	35681992	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001003681.2	+1	validated	p.F434V	1.000	275	0%	371	45%	6	33.3%	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	HMMPfam_HMG_box,HMMSmart_HMG,superfamily_HMG-box
MCM5	4174	genome.wustl.edu	37	22	35806853	35806853	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006739.3	+1	reviewed	p.R290Q	1.000	106	0%	126	41.3%	63	36.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00350,superfamily_Nucleic acid-binding proteins
MCM5	4174	genome.wustl.edu	37	22	35813826	35813826	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006739.3	+1	reviewed	p.K560N	1.000	66	0%	71	43.7%	289	35.9%	possibly_damaging(0.939)	deleterious(0)	deleterious(0.829)	HMMPfam_MCM,HMMSmart_SM00350,superfamily_P-loop containing nucleoside triphosphate hydrolases
RBFOX2	23543	genome.wustl.edu	37	22	36164375	36164375	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001082578.1	-1	reviewed	p.E229K	1.000	147	0%	214	43.9%	50	36%	possibly_damaging(0.95)	tolerated(0.07)	deleterious(0.713)	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928
CSF2RB	1439	genome.wustl.edu	37	22	37331696	37331696	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000395.2	+1	reviewed	p.K477N	0.205	53	0%	76	50%	1	0%	benign(0.018)	deleterious(0.02)	neutral(0.384)	NULL
RAC2	5880	genome.wustl.edu	37	22	37637682	37637682	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002872.3	-1	reviewed	p.C18R	1.000	240	0%	305	44.6%	76	22.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_RHO,HMMPfam_Ras,superfamily_SSF52540
TRIOBP	11078	genome.wustl.edu	37	22	38120439	38120439	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001039141.2	+1	reviewed	p.T626A	0.009	646	0%	675	43.7%	0	-	possibly_damaging(0.945)	tolerated(0.45)	neutral(0.402)	NULL
TRIOBP	11078	genome.wustl.edu	37	22	38151657	38151657	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001039141.2	+1	reviewed	p.D1893G	1.000	47	0%	70	32.9%	117	40.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ENSG00000235456	0	genome.wustl.edu	37	22	38202151	38202151	+	RNA	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000455466	-1	known	NULL	0.000	70	0%	108	17.6%	89	26.9%	-	-	-	-
DMC1	11144	genome.wustl.edu	37	22	38958363	38958363	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007068.2	-1	reviewed	p.F85L	1.000	235	0%	270	20.7%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Rad51,superfamily_SSF52540
ENSG00000184949	0	genome.wustl.edu	37	22	39024935	39024935	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000355830	-1	known	p.F169L	0.684	118	0%	116	42.2%	0	-	possibly_damaging(0.649)	deleterious(0.03)	deleterious(0.593)	NULL
SUN2	25777	genome.wustl.edu	37	22	39137514	39137514	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015374.1	-1	validated	p.I377	0.445	132	0%	164	47.6%	50	48%	-	-	-	NULL
APOBEC3A	200315	genome.wustl.edu	37	22	39357418	39357418	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_145699.3	+1	validated	p.Y67	0.000	193	0.5%	238	13%	2	0%	-	-	-	HMMPfam_APOBEC_N
APOBEC3A	200315	genome.wustl.edu	37	22	39357476	39357476	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_145699.3	+1	validated	p.A87T	0.000	228	0%	295	32.5%	3	0%	possibly_damaging(0.659)	tolerated(0.06)	deleterious(0.555)	HMMPfam_APOBEC_N,PatternScan_CYT_DCMP_DEAMINASES,superfamily_Cytidine_deaminase-like
CBX7	23492	genome.wustl.edu	37	22	39534672	39534672	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_175709.3	-1	validated	p.R72I	1.000	189	0.5%	251	47%	2	50%	possibly_damaging(0.929)	deleterious(0)	deleterious(0.821)	NULL
MKL1	57591	genome.wustl.edu	37	22	40817050	40817050	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020831.3	-1	validated	p.E228K	1.000	202	0%	291	43.6%	64	43.7%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	NULL
MCHR1	2847	genome.wustl.edu	37	22	41075470	41075470	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005297.3	+1	reviewed	p.K7N	1.000	33	0%	52	44.2%	1	100%	unknown(0)	deleterious(0)	-	NULL
EP300	2033	genome.wustl.edu	37	22	41574665	41574665	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001429.3	+1	reviewed	p.R2317L	1.000	146	0%	168	36.3%	170	43.5%	unknown(0)	tolerated(0.08)	-	NULL
NDUFA6	4700	genome.wustl.edu	37	22	42482275	42482275	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002490.3	-1	validated	p.R126Q	1.000	315	0%	387	38%	272	45.5%	probably_damaging(0.955)	tolerated(0.47)	neutral(0.410)	NULL
LOC100289204	100289204	genome.wustl.edu	37	22	42537189	42537189	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_002343781.1	+1	model	p.D160N	0.000	32	0%	32	71.9%	8	12.5%	-	-	-	NULL
ATP5L2	267020	genome.wustl.edu	37	22	43036026	43036026	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000505920	-1	known	p.T85	1.000	296	0%	427	44.7%	0	-	-	-	-	HMMPfam_ATP-synt_G
TTLL1	25809	genome.wustl.edu	37	22	43447829	43447829	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012263.4	-1	validated	p.K319T	1.000	171	0%	212	11.3%	98	5.1%	benign(0)	tolerated(0.53)	neutral(0.007)	HMMPfam_TTL,superfamily_Glutathione synthetase ATP-binding domain-like
MPPED1	758	genome.wustl.edu	37	22	43894197	43894197	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001044370.1	+1	validated	p.V239I	0.980	34	0%	44	47.7%	0	-	benign(0.002)	tolerated(0.51)	neutral(0.009)	HMMPfam_Metallophos,superfamily_Metallo-dependent phosphatases
EFCAB6	64800	genome.wustl.edu	37	22	43972244	43972244	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_022785.2	-1	validated	p.R1118I	0.001	120	0%	126	42.1%	0	-	possibly_damaging(0.861)	deleterious(0.05)	deleterious(0.678)	superfamily_EF-hand
EFCAB6	64800	genome.wustl.edu	37	22	44004441	44004441	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_022785.2	-1	validated	p.R868*	0.387	177	0%	309	44%	0	-	-	-	-	superfamily_EF-hand
PARVG	64098	genome.wustl.edu	37	22	44583730	44583730	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001137605.1	+1	validated	p.F73	0.999	167	0%	223	38.1%	133	28.5%	-	-	-	HMMPfam_CH,superfamily_Calponin-homology domain CH-domain
SMC1B	27127	genome.wustl.edu	37	22	45795181	45795181	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_148674.3	-1	validated	p.E303*	1.000	579	0%	704	44.2%	0	-	-	-	-	HMMPfam_SMC_N,superfamily_SSF52540
PKDREJ	10343	genome.wustl.edu	37	22	46652917	46652917	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006071.1	-1	reviewed	p.F2101	0.000	97	0%	98	41.8%	0	-	-	-	-	HMMPfam_PKD_channel
TTC38	55020	genome.wustl.edu	37	22	46677541	46677541	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017931.2	+1	validated	p.A221T	0.998	139	0%	190	41.1%	42	52.3%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	superfamily_SSF48452
CELSR1	9620	genome.wustl.edu	37	22	46931448	46931448	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014246.1	-1	reviewed	p.G540	0.996	60	0%	42	50%	18	44.4%	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
TBC1D22A	25771	genome.wustl.edu	37	22	47287249	47287249	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014346.1	+1	provisional	p.D266N	0.973	170	0%	213	38%	17	41.1%	benign(0.005)	tolerated(0.08)	neutral(0.300)	HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p
TBC1D22A	25771	genome.wustl.edu	37	22	47432996	47432996	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014346.1	+1	provisional	p.E411K	1.000	80	0%	55	34.5%	55	25.4%	possibly_damaging(0.656)	tolerated(0.13)	deleterious(0.484)	HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p
BRD1	23774	genome.wustl.edu	37	22	50170765	50170765	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014577.1	-1	reviewed	p.R882Q	1.000	21	0%	36	50%	59	45.7%	unknown(0)	deleterious(0.01)	-	NULL
BRD1	23774	genome.wustl.edu	37	22	50191612	50191612	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014577.1	-1	reviewed	p.V647M	0.997	152	0.7%	214	16.8%	23	13%	possibly_damaging(0.952)	tolerated(0.14)	deleterious(0.645)	HMMPfam_Bromodomain,HMMSmart_BROMO,superfamily_Bromodomain
TUBGCP6	85378	genome.wustl.edu	37	22	50659379	50659379	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020461.3	-1	reviewed	p.V1137M	0.994	42	0%	84	48.8%	149	44.9%	possibly_damaging(0.555)	deleterious(0)	deleterious(0.634)	HMMPfam_Spc97_Spc98
TUBGCP6	85378	genome.wustl.edu	37	22	50659431	50659431	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020461.3	-1	reviewed	p.E1119D	0.988	53	0%	99	18.2%	129	16.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Spc97_Spc98
TUBGCP6	85378	genome.wustl.edu	37	22	50662600	50662600	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020461.3	-1	reviewed	p.S747F	1.000	44	0%	72	48.6%	44	47.7%	possibly_damaging(0.932)	deleterious(0)	deleterious(0.823)	HMMPfam_Spc97_Spc98
TUBGCP6	85378	genome.wustl.edu	37	22	50682381	50682381	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020461.3	-1	reviewed	p.L170V	0.001	110	0%	125	44.8%	42	54.7%	possibly_damaging(0.945)	tolerated(0.05)	deleterious(0.735)	NULL
PLXNB2	23654	genome.wustl.edu	37	22	50727442	50727442	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012401.2	-1	validated	p.E400K	1.000	29	0%	32	34.4%	345	46.6%	probably_damaging(0.995)	tolerated(0.12)	deleterious(0.718)	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema
FAM116B	414918	genome.wustl.edu	37	22	50754669	50754669	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000433760	-1	known	p.S212L	0.950	22	0%	27	51.9%	8	37.5%	-	-	-	HMMPfam_DUF1630
MIOX	55586	genome.wustl.edu	37	22	50926471	50926471	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017584.5	+1	validated	p.D112Y	0.999	35	0%	54	40.7%	1	100%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_DUF706
LMF2	91289	genome.wustl.edu	37	22	50941845	50941845	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033200.2	-1	validated	p.S675L	0.005	6	0.000	13	0.615	44	52.2%	benign(0.013)	deleterious(0.04)	neutral(0.349)	NULL
LMF2	91289	genome.wustl.edu	37	22	50944590	50944590	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000487499	-1	known	p.R223C	0.619	11	0%	21	42.9%	139	35.2%	-	-	-	HMMPfam_DUF1222
TYMP	1890	genome.wustl.edu	37	22	50967873	50967873	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000426603	-1	known	p.R89I	0.000	16	0%	23	65.2%	2	0%	-	-	-	NULL
SHANK3	85358	genome.wustl.edu	37	22	51117290	51117290	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001080420.1	+1	reviewed	p.R181H	0.033	35	0%	49	36.7%	11	9%	probably_damaging(0.978)	deleterious(0.01)	deleterious(0.826)	HMMPfam_Ank,superfamily_Ankyrin repeat
SHANK3	85358	genome.wustl.edu	37	22	51160275	51160275	+	Silent	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001080420.1	+1	reviewed	p.S1354	1.000	5	0.000	15	0.533	7	57.1%	-	-	-	NULL
ENSG00000198888	0	genome.wustl.edu	37	MT	3732	3732	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000361390	+1	known	p.Y142	NULL	6	0.000	4	0.750	7983	93.8%	-	-	-	HMMPfam_NADHdh
CRLF2	64109	genome.wustl.edu	37	X	1317423	1317423	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000381567	-1	known	p.I214	0.000	479	0%	600	16.7%	0	-	-	-	-	NULL
CRLF2	64109	genome.wustl.edu	37	X	1317570	1317570	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000381567	-1	known	p.E165D	0.000	261	0%	329	44.1%	0	-	benign(0.152)	tolerated(0.57)	neutral(0.019)	superfamily_Fibronectin type III
CSF2RA	1438	genome.wustl.edu	37	X	1401670	1401670	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006140.4	+1	reviewed	p.S25L	0.000	397	0%	500	47.8%	2	0%	benign(0.006)	tolerated(0.12)	neutral(0.261)	NULL
ENSG00000223274	0	genome.wustl.edu	37	X	1419221	1419221	+	RNA	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000411342	-1	novel	NULL	0.081	31	0%	34	32.4%	0	-	-	-	-	-
IL3RA	3563	genome.wustl.edu	37	X	1464294	1464294	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002183.2	+1	reviewed	p.I50	0.000	535	0.2%	661	41%	6	16.6%	-	-	-	NULL
ASMTL	8623	genome.wustl.edu	37	X	1537964	1537964	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004192.3	-1	reviewed	p.R430Q	0.536	48	0%	58	31%	196	51.5%	possibly_damaging(0.597)	tolerated(0.6)	neutral(0.211)	HMMPfam_Methyltransf_2,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
AKAP17A	8227	genome.wustl.edu	37	X	1712712	1712712	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005088.2	+1	validated	p.I119	0.985	33	0%	32	31.2%	22	13.6%	-	-	-	NULL
AKAP17A	8227	genome.wustl.edu	37	X	1712898	1712898	+	Silent	SNP	C	C	T	rs192863245	by1000genomes	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005088.2	+1	validated	p.F181	0.998	70	1.4%	104	19.2%	22	13.6%	-	-	-	NULL
ASMT	438	genome.wustl.edu	37	X	1761817	1761817	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004043.2	+1	reviewed	p.H344Q	0.923	417	0%	556	48.4%	0	-	benign(0.002)	tolerated(0.1)	neutral(0.286)	HMMPfam_Methyltransf_2,superfamily_SSF53335
ZBED1	9189	genome.wustl.edu	37	X	2408726	2408726	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004729.3	-1	reviewed	p.D12G	1.000	136	0%	187	51.9%	14	50%	possibly_damaging(0.477)	tolerated(0.54)	neutral(0.165)	NULL
XG	7499	genome.wustl.edu	37	X	2726231	2726231	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001141919.1	+1	reviewed	p.D142Y	0.243	146	0%	232	43.5%	6	33.3%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
GYG2	8908	genome.wustl.edu	37	X	2777964	2777964	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003918.2	+1	reviewed	p.S263L	0.008	110	0%	122	48.4%	5	80%	benign(0.103)	tolerated(0.31)	neutral(0.035)	superfamily_Nucleotide-diphospho-sugar transferases
ARSF	416	genome.wustl.edu	37	X	3030316	3030316	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004042.3	+1	reviewed	p.V498I	0.961	143	0%	193	43.5%	0	-	possibly_damaging(0.769)	tolerated(0.15)	deleterious(0.526)	HMMPfam_Sulfatase,superfamily_Alkaline phosphatase-like
MXRA5	25878	genome.wustl.edu	37	X	3235655	3235655	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015419.3	-1	reviewed	p.Y2023D	1.000	51	0%	45	57.8%	40	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
MXRA5	25878	genome.wustl.edu	37	X	3238183	3238183	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015419.3	-1	reviewed	p.S1848Y	0.001	146	0%	171	48.5%	4	75%	benign(0.069)	deleterious(0.02)	neutral(0.388)	NULL
MXRA5	25878	genome.wustl.edu	37	X	3238564	3238564	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015419.3	-1	reviewed	p.R1721I	0.001	241	0%	261	44.1%	2	50%	benign(0.258)	deleterious(0)	deleterious(0.472)	NULL
MXRA5	25878	genome.wustl.edu	37	X	3248104	3248104	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015419.3	-1	reviewed	p.D222N	1.000	169	0%	290	47.2%	1	100%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_SM00082,superfamily_L domain-like
PRKX	5613	genome.wustl.edu	37	X	3559972	3559972	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005044.4	-1	reviewed	p.E214K	0.998	121	0%	138	44.9%	8	62.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
NLGN4X	57502	genome.wustl.edu	37	X	5821687	5821687	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020742.2	-1	reviewed	p.I344	0.492	147	0%	213	47.4%	11	72.7%	-	-	-	HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases
STS	412	genome.wustl.edu	37	X	7267975	7267975	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000351.4	+1	reviewed	p.P475	0.124	135	0%	200	25.5%	7	28.5%	-	-	-	HMMPfam_Sulfatase,superfamily_Alkaline_phosphatase_core
VCX3B	425054	genome.wustl.edu	37	X	8434463	8434463	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000440654	+1	known	p.K130T	0.077	314	0%	378	56.3%	0	-	-	-	-	NULL
KAL1	3730	genome.wustl.edu	37	X	8504959	8504959	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000216.2	-1	reviewed	p.L492M	1.000	308	0%	326	13.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_FN3
WWC3	55841	genome.wustl.edu	37	X	10062201	10062201	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015691.3	+1	validated	p.K179N	1.000	103	0%	113	40.7%	10	0%	benign(0.009)	tolerated(0.3)	neutral(0.029)	NULL
CLCN4	1183	genome.wustl.edu	37	X	10176400	10176400	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001830.3	+1	reviewed	p.N387D	1.000	78	0%	109	41.3%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Voltage_CLC,superfamily_Clc chloride channel
MID1	4281	genome.wustl.edu	37	X	10417525	10417525	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000381.2	-1	reviewed	p.F629	1.000	93	0%	151	45%	18	0%	-	-	-	HMMPfam_SPRY,HMMSmart_SM00449
ARHGAP6	395	genome.wustl.edu	37	X	11187648	11187648	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_013427.2	-1	reviewed	p.E596*	1.000	208	0%	269	45.4%	0	-	-	-	-	HMMSmart_SM00324,superfamily_GTPase activation domain GAP
FRMPD4	9758	genome.wustl.edu	37	X	12722533	12722533	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014728.3	+1	reviewed	p.E376*	1.000	237	0%	298	44%	0	-	-	-	-	HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41
FRMPD4	9758	genome.wustl.edu	37	X	12725710	12725710	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014728.3	+1	reviewed	p.I470	0.156	204	0%	298	42.6%	0	-	-	-	-	NULL
TRAPPC2	6399	genome.wustl.edu	37	X	13732584	13732584	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001011658.3	-1	reviewed	p.R122Q	1.000	232	0%	291	38.1%	2	0%	benign(0.027)	tolerated(0.48)	neutral(0.012)	HMMPfam_Sedlin_N,superfamily_SNARE-like
OFD1	8481	genome.wustl.edu	37	X	13754792	13754792	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003611.2	+1	reviewed	p.E103*	1.000	128	0%	147	44.2%	1	0%	-	-	-	NULL
OFD1	8481	genome.wustl.edu	37	X	13771530	13771530	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003611.2	+1	reviewed	p.R367*	0.011	358	0.3%	402	45.5%	2	50%	-	-	-	NULL
FANCB	2187	genome.wustl.edu	37	X	14861699	14861699	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001018113.1	-1	reviewed	p.S857I	0.000	108	0%	161	47.8%	0	-	benign(0.141)	deleterious(0.02)	neutral(0.395)	NULL
FANCB	2187	genome.wustl.edu	37	X	14862000	14862000	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001018113.1	-1	reviewed	p.D757N	0.002	172	0%	222	47.7%	0	-	benign(0)	tolerated(0.15)	neutral(0.241)	NULL
FANCB	2187	genome.wustl.edu	37	X	14863161	14863161	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001018113.1	-1	reviewed	p.T582A	0.995	133	0%	142	45.1%	0	-	possibly_damaging(0.921)	tolerated(0.05)	deleterious(0.716)	NULL
BMX	660	genome.wustl.edu	37	X	15564933	15564933	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001721.6	+1	reviewed	p.L562I	0.996	253	0%	376	13.3%	1	0%	possibly_damaging(0.479)	deleterious(0.03)	deleterious(0.523)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
ACE2	59272	genome.wustl.edu	37	X	15582154	15582154	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021804.2	-1	reviewed	p.R768W	0.845	212	0%	266	47%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ACE2	59272	genome.wustl.edu	37	X	15589853	15589853	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021804.2	-1	reviewed	p.K577N	0.002	521	0%	607	26.5%	0	-	possibly_damaging(0.471)	tolerated(0.08)	neutral(0.456)	"HMMPfam_Peptidase_M2,superfamily_Metalloproteases (""zincins"") catalytic domain"
ACE2	59272	genome.wustl.edu	37	X	15596384	15596384	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021804.2	-1	reviewed	p.E375D	1.000	134	0%	199	42.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	"HMMPfam_Peptidase_M2,superfamily_Metalloproteases (""zincins"") catalytic domain"
CA5B	11238	genome.wustl.edu	37	X	15768177	15768177	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007220.3	+1	reviewed	p.L11I	0.013	188	0%	184	38%	7	85.7%	benign(0.004)	deleterious(0)	neutral(0.445)	NULL
GRPR	2925	genome.wustl.edu	37	X	16142227	16142227	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005314.2	+1	reviewed	p.I51V	1.000	194	0%	311	50.2%	2	0%	probably_damaging(0.998)	tolerated(0.06)	deleterious(0.797)	superfamily_Family A G protein-coupled receptor-like
GRPR	2925	genome.wustl.edu	37	X	16168665	16168665	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005314.2	+1	reviewed	p.V217	0.998	331	0%	441	46.3%	2	50%	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
TXLNG	55787	genome.wustl.edu	37	X	16847870	16847870	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018360.2	+1	reviewed	p.E281K	1.000	192	0%	274	33.6%	3	33.3%	possibly_damaging(0.926)	deleterious(0)	deleterious(0.819)	HMMPfam_Taxilin
RBBP7	5931	genome.wustl.edu	37	X	16870696	16870696	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002893.3	-1	reviewed	p.S314Y	1.000	131	0%	148	38.5%	94	0%	benign(0.006)	tolerated(0.2)	neutral(0.049)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
RBBP7	5931	genome.wustl.edu	37	X	16876913	16876913	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002893.3	-1	reviewed	p.E123K	1.000	345	0%	482	39.4%	424	0.2%	benign(0.005)	tolerated(0.31)	neutral(0.027)	HMMSmart_SM00320,superfamily_WD40 repeat-like
NHS	4810	genome.wustl.edu	37	X	17739695	17739695	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_198270.2	+1	reviewed	p.E329D	1.000	489	0.6%	679	10.5%	3	0%	possibly_damaging(0.942)	deleterious(0.01)	deleterious(0.792)	NULL
NHS	4810	genome.wustl.edu	37	X	17745255	17745255	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_198270.2	+1	reviewed	p.A989D	1.000	56	0%	53	34%	0	-	probably_damaging(0.996)	deleterious(0.04)	deleterious(0.810)	NULL
SCML1	6322	genome.wustl.edu	37	X	17767535	17767535	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001037540.1	+1	validated	p.L72	0.000	292	0%	355	40.6%	0	-	-	-	-	NULL
SCML1	6322	genome.wustl.edu	37	X	17770069	17770069	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001037540.1	+1	validated	p.D280N	0.002	437	0%	580	48.3%	8	87.5%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_SAM_1,HMMSmart_SM00454,superfamily_SAM/Pointed domain
RAI2	10742	genome.wustl.edu	37	X	17820053	17820053	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021785.4	-1	reviewed	p.E26	0.996	102	0%	142	45.1%	69	97.1%	-	-	-	NULL
BEND2	139105	genome.wustl.edu	37	X	18194132	18194132	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_153346.4	-1	validated	p.S571F	0.013	183	0%	237	46.8%	0	-	possibly_damaging(0.952)	deleterious(0)	deleterious(0.840)	HMMPfam_BEN
SCML2	10389	genome.wustl.edu	37	X	18338512	18338512	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006089.2	-1	validated	p.P142	0.857	338	0%	351	42.2%	1	100%	-	-	-	HMMSmart_SM00561,superfamily_Tudor/PWWP/MBT
CDKL5	6792	genome.wustl.edu	37	X	18593504	18593504	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001037343.1	+1	reviewed	p.R59Q	1.000	293	0%	375	48.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
RS1	6247	genome.wustl.edu	37	X	18690182	18690182	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000330.3	-1	reviewed	p.R3C	0.701	216	0.5%	255	38%	0	-	unknown(0)	tolerated(0.14)	-	NULL
PPEF1	5475	genome.wustl.edu	37	X	18768005	18768005	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006240.2	+1	reviewed	p.R111W	0.976	202	0%	288	49%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PPP5,superfamily_Metallo-dependent phosphatases
PHKA2	5256	genome.wustl.edu	37	X	18912487	18912487	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000292.2	-1	reviewed	p.V1124	1.000	51	0%	71	42.3%	60	0%	-	-	-	HMMPfam_PHK_AB
PHKA2	5256	genome.wustl.edu	37	X	18923936	18923936	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000292.2	-1	reviewed	p.D950N	1.000	263	0%	347	42.1%	14	0%	benign(0.024)	tolerated(0.07)	neutral(0.320)	HMMPfam_PHK_AB
GPR64	10149	genome.wustl.edu	37	X	19031926	19031926	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001079858.2	-1	validated	p.S326Y	0.130	320	0%	501	42.7%	0	-	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	NULL
PDHA1	5160	genome.wustl.edu	37	X	19368100	19368100	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000284.3	+1	reviewed	p.V55L	0.999	322	0%	395	44.1%	114	0%	benign(0.003)	tolerated(0.23)	neutral(0.042)	superfamily_Thiamin diphosphate-binding fold (THDP-binding)
PDHA1	5160	genome.wustl.edu	37	X	19368172	19368172	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000284.3	+1	reviewed	p.D79Y	1.000	542	0%	726	45.2%	59	0%	probably_damaging(0.965)	deleterious(0.01)	deleterious(0.812)	HMMPfam_E1_dh,superfamily_Thiamin diphosphate-binding fold (THDP-binding)
MAP3K15	389840	genome.wustl.edu	37	X	19391796	19391796	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001001671.3	-1	validated	p.V406I	0.000	43	0%	66	42.4%	0	-	benign(0.001)	tolerated(0.4)	neutral(0.016)	superfamily_Kinase_like
MAP3K15	389840	genome.wustl.edu	37	X	19431480	19431480	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000338883	-1	known	p.E565*	1.000	510	0%	608	40.5%	0	-	-	-	-	NULL
MAP3K15	389840	genome.wustl.edu	37	X	19533070	19533070	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000338883	-1	known	p.G104R	1.000	7	0.000	14	0.357	0	-	probably_damaging(1)	tolerated(0.05)	deleterious(0.845)	NULL
CXorf23	256643	genome.wustl.edu	37	X	19973551	19973551	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_198279.3	-1	validated	p.E470*	1.000	483	0%	632	43.5%	2	0%	-	-	-	NULL
MAP7D2	256714	genome.wustl.edu	37	X	20029058	20029058	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152780.3	-1	validated	p.D688Y	1.000	129	0%	144	13.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MAP7D2	256714	genome.wustl.edu	37	X	20043155	20043155	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152780.3	-1	validated	p.A401	0.844	324	0%	356	42.1%	0	-	-	-	-	HMMPfam_MAP7
CNKSR2	22866	genome.wustl.edu	37	X	21519658	21519658	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014927.3	+1	reviewed	p.K254N	1.000	137	0%	188	42.6%	0	-	probably_damaging(1)	tolerated(0.14)	deleterious(0.750)	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
SMPX	23676	genome.wustl.edu	37	X	21772398	21772398	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014332.1	-1	provisional	p.S4L	1.000	212	0%	197	38.6%	0	-	possibly_damaging(0.474)	deleterious(0)	deleterious(0.601)	NULL
MBTPS2	51360	genome.wustl.edu	37	X	21887785	21887785	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015884.3	+1	reviewed	p.F320S	1.000	101	0%	137	48.2%	1	0%	benign(0.062)	tolerated(0.24)	neutral(0.041)	HMMPfam_Peptidase_M50
PHEX	5251	genome.wustl.edu	37	X	22095740	22095740	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000444.4	+1	reviewed	p.R195C	0.997	262	0%	281	46.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Peptidase_M13_N,superfamily_SSF55486
DDX53	168400	genome.wustl.edu	37	X	23019263	23019263	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_182699.2	+1	validated	p.N363K	0.000	117	0%	149	44.3%	0	-	benign(0.023)	tolerated(0.14)	neutral(0.251)	HMMPfam_DEAD,HMMSmart_DEXDc,superfamily_SSF52540
LOC653707	653707	genome.wustl.edu	37	X	23216506	23216506	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_002343798.1	+1	model	p.F17	0.068	309	0%	362	44.5%	0	-	-	-	-	NULL
LOC653707	653707	genome.wustl.edu	37	X	23216638	23216638	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_002343798.1	+1	model	p.F61	0.300	363	0.3%	433	44.8%	0	-	-	-	-	NULL
ACOT9	23597	genome.wustl.edu	37	X	23724806	23724806	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001037171.1	-1	reviewed	p.A261T	1.000	197	0%	278	39.9%	8	0%	possibly_damaging(0.932)	tolerated(0.1)	deleterious(0.665)	NULL
ACOT9	23597	genome.wustl.edu	37	X	23748962	23748962	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001037171.1	-1	reviewed	p.E111D	1.000	161	0%	162	41.4%	11	0%	benign(0.013)	tolerated(0.68)	neutral(0.003)	superfamily_Thioesterase/thiol ester dehydrase-isomerase
KLHL15	80311	genome.wustl.edu	37	X	24006660	24006660	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_030624.2	-1	reviewed	p.R398I	1.000	165	0%	247	45.7%	3	0%	probably_damaging(0.983)	tolerated(0.07)	deleterious(0.748)	HMMPfam_Kelch_1,HMMSmart_Kelch,superfamily_Gal_oxid_central
EIF2S3	1968	genome.wustl.edu	37	X	24073733	24073733	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001415.3	+1	reviewed	p.D24G	1.000	170	0%	183	34.4%	151	12.5%	benign(0.02)	deleterious(0.03)	neutral(0.365)	NULL
ZFX	7543	genome.wustl.edu	37	X	24229221	24229221	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003410.3	+1	reviewed	p.D716N	1.000	214	0%	309	49.2%	9	33.3%	benign(0.038)	tolerated(0.32)	neutral(0.026)	superfamily_C2H2 and C2HC zinc fingers
PDK3	5165	genome.wustl.edu	37	X	24523330	24523330	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001142386.2	+1	reviewed	p.L170	0.930	333	0%	414	41.3%	9	0%	-	-	-	HMMPfam_BCDHK_Adom3,superfamily_SSF69012
PCYT1B	9468	genome.wustl.edu	37	X	24593334	24593334	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004845.4	-1	reviewed	p.K270N	1.000	788	0%	955	41%	0	-	possibly_damaging(0.592)	deleterious(0.04)	deleterious(0.553)	NULL
POLA1	5422	genome.wustl.edu	37	X	24722537	24722537	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016937.3	+1	reviewed	p.E93D	1.000	891	0%	1005	42.4%	7	100%	possibly_damaging(0.518)	tolerated(0.41)	neutral(0.190)	NULL
POLA1	5422	genome.wustl.edu	37	X	24745086	24745086	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016937.3	+1	reviewed	p.E471*	1.000	214	0.5%	253	42.3%	0	-	-	-	-	HMMPfam_DNA_pol_B_exo,superfamily_RNaseH_fold
POLA1	5422	genome.wustl.edu	37	X	24839595	24839595	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016937.3	+1	reviewed	p.Y1146	1.000	207	0%	289	38.1%	6	0%	-	-	-	HMMPfam_DNA_pol_B,superfamily_SSF56672
MAGEB18	286514	genome.wustl.edu	37	X	26157655	26157655	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_173699.3	+1	validated	p.D185Y	0.003	88	0%	103	35%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MAGE
MAGEB18	286514	genome.wustl.edu	37	X	26157841	26157841	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_173699.3	+1	validated	p.D247Y	0.789	226	0%	300	45.3%	0	-	possibly_damaging(0.673)	deleterious(0)	deleterious(0.683)	HMMPfam_MAGE
DCAF8L2	347442	genome.wustl.edu	37	X	27765778	27765778	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001136533.1	+1	provisional	p.D256Y	1.000	146	0%	174	40.2%	0	-	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
MAGEB10	139422	genome.wustl.edu	37	X	27839704	27839704	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_182506.3	+1	reviewed	p.P94L	0.001	85	0%	102	43.1%	0	-	benign(0.132)	tolerated(0.33)	neutral(0.035)	NULL
IL1RAPL1	11141	genome.wustl.edu	37	X	29973330	29973330	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014271.3	+1	reviewed	p.R495I	1.000	140	0%	184	46.2%	0	-	probably_damaging(0.982)	tolerated(0.05)	deleterious(0.772)	HMMPfam_TIR,HMMSmart_SM00255,superfamily_Toll/Interleukin receptor TIR domain
MAGEB2	4113	genome.wustl.edu	37	X	30236743	30236743	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002364.4	+1	reviewed	p.R16C	0.049	98	0%	136	43.4%	0	-	probably_damaging(0.998)	tolerated(0.07)	deleterious(0.793)	NULL
MAGEB2	4113	genome.wustl.edu	37	X	30237385	30237385	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002364.4	+1	reviewed	p.L230	0.000	230	0%	273	46.9%	0	-	-	-	-	HMMPfam_MAGE
MAGEB2	4113	genome.wustl.edu	37	X	30237458	30237458	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002364.4	+1	reviewed	p.Q254R	0.013	203	0%	208	42.3%	0	-	benign(0.012)	tolerated(0.8)	neutral(0.001)	HMMPfam_MAGE
MAGEB1	4112	genome.wustl.edu	37	X	30268842	30268842	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002363.4	+1	reviewed	p.E78K	0.000	47	0%	72	11.1%	0	-	benign(0)	tolerated(1)	-	NULL
CXorf21	80231	genome.wustl.edu	37	X	30578107	30578107	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_025159.2	-1	validated	p.K122N	1.000	97	0%	151	43%	0	-	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	NULL
GK	2710	genome.wustl.edu	37	X	30714266	30714266	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001128127.1	+1	reviewed	p.C220	1.000	274	0%	367	26.4%	0	-	-	-	-	HMMPfam_FGGY_N,superfamily_SSF53067
TAB3	257397	genome.wustl.edu	37	X	30873352	30873352	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152787.3	-1	reviewed	p.E144K	1.000	161	0%	221	44.3%	14	100%	benign(0.077)	tolerated(0.18)	neutral(0.061)	NULL
DMD	1756	genome.wustl.edu	37	X	31196837	31196837	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004006.2	-1	reviewed	p.R3391Q	1.000	217	0%	297	41.4%	3	0%	probably_damaging(1)	tolerated(0.11)	deleterious(0.772)	NULL
DMD	1756	genome.wustl.edu	37	X	31525458	31525458	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004006.2	-1	reviewed	p.R2777I	1.000	536	0%	736	45.2%	0	-	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
DMD	1756	genome.wustl.edu	37	X	31676192	31676192	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004006.2	-1	reviewed	p.L2648I	1.000	321	0%	342	26.3%	0	-	benign(0.178)	tolerated(0.4)	neutral(0.033)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
DMD	1756	genome.wustl.edu	37	X	32382735	32382735	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004006.2	-1	reviewed	p.E1706D	1.000	704	0.1%	918	14.7%	0	-	benign(0.001)	tolerated(0.23)	neutral(0.042)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
DMD	1756	genome.wustl.edu	37	X	32456459	32456459	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004006.2	-1	reviewed	p.R1324C	1.000	379	0%	436	42.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
FAM47B	170062	genome.wustl.edu	37	X	34962272	34962272	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152631.2	+1	validated	p.D442Y	0.001	207	0%	253	41.1%	0	-	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	NULL
FAM47B	170062	genome.wustl.edu	37	X	34962607	34962607	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152631.2	+1	validated	p.F553	0.000	155	0%	185	48.6%	0	-	-	-	-	NULL
CXorf30	645090	genome.wustl.edu	37	X	36402918	36402918	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001098843.3	+1	validated	p.E567*	0.000	56	0%	61	45.9%	2	0%	-	-	-	NULL
XK	7504	genome.wustl.edu	37	X	37587522	37587522	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021083.2	+1	reviewed	p.S381Y	1.000	230	0%	219	48.9%	1	100%	possibly_damaging(0.867)	deleterious(0.01)	deleterious(0.742)	NULL
XK	7504	genome.wustl.edu	37	X	37587685	37587685	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021083.2	+1	reviewed	p.F435L	0.000	54	0%	66	45.5%	0	-	benign(0)	tolerated(0.15)	neutral(0.241)	NULL
SYTL5	94122	genome.wustl.edu	37	X	37969664	37969664	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_138780.2	+1	reviewed	p.E509K	1.000	193	0%	303	22.8%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
RPGR	6103	genome.wustl.edu	37	X	38146002	38146002	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001034853.1	-1	reviewed	p.E750D	0.001	752	0%	1050	42.2%	1	100%	unknown(0)	tolerated(0.68)	-	NULL
RPGR	6103	genome.wustl.edu	37	X	38146424	38146424	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001034853.1	-1	reviewed	p.E610*	0.001	211	0%	355	41.7%	8	0%	-	-	-	NULL
RPGR	6103	genome.wustl.edu	37	X	38178171	38178171	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001034853.1	-1	reviewed	p.R127I	0.848	208	0%	270	45.6%	1	100%	possibly_damaging(0.949)	tolerated(0.06)	deleterious(0.716)	superfamily_RCC1/BLIP-II
OTC	5009	genome.wustl.edu	37	X	38271192	38271192	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000531.5	+1	reviewed	p.V315	0.864	265	0%	348	37.9%	0	-	-	-	-	superfamily_Aspartate/ornithine carbamoyltransferase,HMMPfam_OTCace
MED14	9282	genome.wustl.edu	37	X	40540143	40540143	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004229.3	-1	reviewed	p.S826L	1.000	178	0.6%	221	40.7%	17	82.3%	possibly_damaging(0.643)	tolerated(0.31)	neutral(0.253)	NULL
MED14	9282	genome.wustl.edu	37	X	40551443	40551443	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004229.3	-1	reviewed	p.R658W	1.000	335	0%	434	40.3%	5	0%	probably_damaging(0.972)	deleterious(0.01)	deleterious(0.820)	NULL
NYX	60506	genome.wustl.edu	37	X	41333840	41333840	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_022567.2	+1	reviewed	p.F378	0.013	18	0%	13	38.5%	0	-	-	-	-	HMMSmart_LRRCT
CASK	8573	genome.wustl.edu	37	X	41420820	41420820	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003688.3	-1	reviewed	p.K554Q	1.000	239	0%	339	46.6%	18	0%	benign(0.389)	tolerated(0.42)	neutral(0.139)	superfamily_SH3,HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ
MAOA	4128	genome.wustl.edu	37	X	43587532	43587532	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000240.2	+1	reviewed	p.R206W	0.986	355	0%	473	44%	8	0%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_Amino_oxidase,superfamily_FAD/NAD(P)-binding domain
MAOA	4128	genome.wustl.edu	37	X	43603404	43603404	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000240.2	+1	reviewed	p.E475*	0.986	300	0%	389	39.3%	27	0%	-	-	-	superfamily_FAD/NAD(P)-binding domain
NDP	4693	genome.wustl.edu	37	X	43809221	43809221	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000266.3	-1	reviewed	p.E76K	1.000	50	0%	44	40.9%	66	0%	benign(0.253)	tolerated(0.05)	neutral(0.371)	HMMSmart_SM00041
EFHC2	80258	genome.wustl.edu	37	X	44101387	44101387	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000441230	-1	known	p.E401*	1.000	382	0.3%	464	39%	1	0%	benign(0.017)	tolerated(0.14)	neutral(0.250)	NULL
DUSP21	63904	genome.wustl.edu	37	X	44703878	44703878	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_022076.3	+1	reviewed	p.R167H	0.010	62	0%	80	30%	1	100%	benign(0.037)	tolerated(0.43)	neutral(0.015)	NULL
ZNF673	55634	genome.wustl.edu	37	X	46332344	46332344	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001129898.1	+1	validated	p.S138Y	0.001	196	0%	258	25.6%	2	0%	probably_damaging(0.999)	tolerated(0.08)	deleterious(0.790)	NULL
ZNF674	641339	genome.wustl.edu	37	X	46359894	46359894	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001039891.2	-1	validated	p.R377I	0.000	267	0%	308	39.9%	0	-	benign(0.011)	tolerated(0.07)	neutral(0.320)	superfamily_SSF57667
SLC9A7	84679	genome.wustl.edu	37	X	46495061	46495061	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032591.1	-1	reviewed	p.E546K	1.000	176	0%	206	45.6%	1	0%	benign(0.002)	tolerated(0.06)	neutral(0.323)	NULL
SLC9A7	84679	genome.wustl.edu	37	X	46502730	46502730	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032591.1	-1	reviewed	p.F518L	1.000	61	0%	118	44.1%	7	0%	possibly_damaging(0.501)	tolerated(0.33)	neutral(0.192)	HMMPfam_Na_H_Exchanger
RP2	6102	genome.wustl.edu	37	X	46713160	46713160	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006915.2	+1	reviewed	p.R118C	1.000	144	0%	199	41.7%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_CARP,HMMPfam_TBCC
RP2	6102	genome.wustl.edu	37	X	46713336	46713336	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006915.2	+1	reviewed	p.D176E	1.000	183	0%	244	50.4%	8	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_TBCC
PHF16	9767	genome.wustl.edu	37	X	46844338	46844338	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001077445.1	+1	reviewed	p.E15K	0.481	329	0.3%	382	46.3%	0	-	benign(0.042)	tolerated(0.78)	neutral(0.004)	NULL
NDUFB11	54539	genome.wustl.edu	37	X	47002088	47002088	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_019056.5	-1	validated	p.R88Q	0.941	257	0.4%	349	46.1%	610	90.9%	possibly_damaging(0.853)	tolerated(0.13)	deleterious(0.581)	HMMPfam_ESSS
USP11	8237	genome.wustl.edu	37	X	47107095	47107095	+	Silent	SNP	C	C	T	rs182381425	by1000genomes	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004651.3	+1	reviewed	p.I917	0.985	113	0%	189	52.4%	197	0%	-	-	-	HMMPfam_UCH,superfamily_SSF54001
ZNF41	7592	genome.wustl.edu	37	X	47307709	47307709	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007130.2	-1	reviewed	p.R487I	0.684	301	0%	406	44.1%	3	100%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF41	7592	genome.wustl.edu	37	X	47307835	47307835	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007130.2	-1	reviewed	p.G445V	0.999	131	0%	165	43.6%	5	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
SYN1	6853	genome.wustl.edu	37	X	47432303	47432303	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006950.3	-1	reviewed	p.R693H	1.000	178	0%	192	43.2%	0	-	unknown(0)	deleterious(0)	-	NULL
TIMP1	7076	genome.wustl.edu	37	X	47444623	47444623	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003254.2	+1	reviewed	p.A74V	0.009	78	0%	89	13.5%	442	0%	possibly_damaging(0.487)	tolerated(0.11)	neutral(0.433)	HMMPfam_TIMP,HMMSmart_SM00206,superfamily_TIMP-like
ELK1	2002	genome.wustl.edu	37	X	47496466	47496466	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001114123.1	-1	reviewed	p.F378L	1.000	176	0%	259	39.4%	55	0%	benign(0.001)	deleterious(0)	neutral(0.445)	NULL
ZNF81	347344	genome.wustl.edu	37	X	47705707	47705707	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007137.3	+1	reviewed	p.G14D	0.019	63	0%	123	33.3%	1	0%	benign(0.001)	tolerated(0.38)	neutral(0.018)	superfamily_Krueppel-associated_box
SSX4	6759	genome.wustl.edu	37	X	48244008	48244008	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005636.3	+1	reviewed	p.F25	0.004	252	0.8%	292	23.3%	0	-	-	-	-	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
SSX4B	548313	genome.wustl.edu	37	X	48270302	48270302	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001034832.2	-1	reviewed	p.F25	0.001	730	0.1%	824	21.4%	0	-	-	-	-	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
PORCN	64840	genome.wustl.edu	37	X	48369715	48369715	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_203475.1	+1	reviewed	p.V57M	1.000	193	0%	247	46.6%	55	94.5%	benign(0.052)	tolerated(0.16)	neutral(0.062)	NULL
TBC1D25	4943	genome.wustl.edu	37	X	48417730	48417730	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002536.2	+1	validated	p.R234Q	1.000	40	0%	73	41.1%	21	0%	possibly_damaging(0.516)	deleterious(0)	deleterious(0.618)	HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p
TBC1D25	4943	genome.wustl.edu	37	X	48419294	48419294	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002536.2	+1	validated	p.L666	0.856	16	0%	24	37.5%	12	0%	-	-	-	superfamily_Ypt/Rab-GAP domain of gyp1p
WAS	7454	genome.wustl.edu	37	X	48545285	48545285	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000377.2	+1	reviewed	p.K225N	1.000	212	0%	216	40.3%	2	0%	probably_damaging(1)	tolerated(0.38)	deleterious(0.517)	NULL
GATA1	2623	genome.wustl.edu	37	X	48649666	48649666	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002049.3	+1	reviewed	p.P50	0.000	24	0%	17	52.9%	0	-	-	-	-	NULL
HDAC6	10013	genome.wustl.edu	37	X	48674977	48674977	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006044.2	+1	reviewed	p.F576	0.019	75	0%	99	37.4%	15	0%	-	-	-	HMMPfam_Hist_deacetyl,superfamily_SSF52768
HDAC6	10013	genome.wustl.edu	37	X	48675808	48675808	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006044.2	+1	reviewed	p.F623L	1.000	63	0%	107	38.3%	22	0%	possibly_damaging(0.932)	deleterious(0)	deleterious(0.823)	HMMPfam_Hist_deacetyl,superfamily_SSF52768
GPKOW	27238	genome.wustl.edu	37	X	48973404	48973404	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015698.4	-1	validated	p.D298G	0.985	76	0%	99	44.4%	80	0%	probably_damaging(0.998)	tolerated(0.26)	deleterious(0.508)	NULL
CACNA1F	778	genome.wustl.edu	37	X	49067821	49067821	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005183.2	-1	reviewed	p.I1418	0.952	210	0%	205	39.5%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
USP27X	389856	genome.wustl.edu	37	X	49645861	49645861	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001145073.1	+1	provisional	p.A317	0.993	128	0%	184	44%	4	0%	-	-	-	HMMPfam_UCH,superfamily_SSF54001
CLCN5	1184	genome.wustl.edu	37	X	49851180	49851180	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001127898.1	+1	reviewed	p.A404T	1.000	155	0%	208	47.6%	3	0%	benign(0.006)	tolerated(0.45)	neutral(0.012)	HMMPfam_Voltage_CLC,superfamily_Clc chloride channel
AKAP4	8852	genome.wustl.edu	37	X	49962234	49962234	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003886.2	-1	reviewed	p.V45	0.407	225	0%	342	46.8%	0	-	-	-	-	HMMSmart_SM00807
CCNB3	85417	genome.wustl.edu	37	X	50051865	50051865	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033031.2	+1	reviewed	p.K232N	0.006	60	0%	73	54.8%	0	-	possibly_damaging(0.952)	deleterious(0)	deleterious(0.840)	NULL
CCNB3	85417	genome.wustl.edu	37	X	50052214	50052214	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033031.2	+1	reviewed	p.S349P	0.000	112	0%	165	44.8%	0	-	possibly_damaging(0.722)	tolerated(0.69)	neutral(0.264)	NULL
CCNB3	85417	genome.wustl.edu	37	X	50090765	50090765	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033031.2	+1	reviewed	p.L1317	0.104	104	0%	149	45.6%	0	-	-	-	-	HMMPfam_Cyclin_C,HMMSmart_SM00385,superfamily_Cyclin-like
CXorf67	340602	genome.wustl.edu	37	X	51150845	51150845	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000342995	+1	known	p.R326H	0.000	9	0.000	8	0.625	0	-	probably_damaging(0.997)	tolerated(0.28)	deleterious(0.498)	NULL
GSPT2	23708	genome.wustl.edu	37	X	51487236	51487236	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018094.4	+1	reviewed	p.P172T	0.797	68	0%	96	45.8%	4	75%	benign(0)	tolerated(0.33)	neutral(0.024)	NULL
GSPT2	23708	genome.wustl.edu	37	X	51487803	51487803	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018094.4	+1	reviewed	p.E361K	0.997	235	0%	257	40.5%	3	0%	benign(0.002)	tolerated(0.12)	neutral(0.261)	HMMPfam_GTP_EFTU,superfamily_SSF52540
GPR173	54328	genome.wustl.edu	37	X	53106440	53106440	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018969.5	+1	reviewed	p.R213C	1.000	22	0%	27	37%	7	28.5%	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
TSPYL2	64061	genome.wustl.edu	37	X	53114232	53114232	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_022117.3	+1	reviewed	p.F365S	1.000	85	0%	94	24.5%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_NAP
KDM5C	8242	genome.wustl.edu	37	X	53239622	53239622	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004187.3	-1	reviewed	p.N574D	1.000	478	0%	678	16.4%	251	18.7%	benign(0.081)	deleterious(0.01)	neutral(0.412)	HMMSmart_SM00558,HMMPfam_JmjC
HUWE1	10075	genome.wustl.edu	37	X	53563196	53563196	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_031407.4	-1	reviewed	p.S4148I	1.000	182	0%	261	41.4%	127	0%	unknown(0)	deleterious(0)	-	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
HUWE1	10075	genome.wustl.edu	37	X	53654453	53654453	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_031407.4	-1	reviewed	p.L466S	1.000	303	0%	321	46.7%	6	0%	benign(0.312)	tolerated(0.13)	neutral(0.350)	HMMPfam_DUF913,superfamily_ARM repeat
HUWE1	10075	genome.wustl.edu	37	X	53674313	53674313	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_031407.4	-1	reviewed	p.E117*	1.000	125	0%	166	46.4%	7	0%	-	-	-	HMMPfam_DUF908
FAM120C	54954	genome.wustl.edu	37	X	54114219	54114219	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017848.4	-1	validated	p.R869Q	0.980	155	0%	192	50.5%	2	0%	possibly_damaging(0.946)	deleterious(0.03)	deleterious(0.754)	NULL
WNK3	65267	genome.wustl.edu	37	X	54319365	54319365	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020922.4	-1	reviewed	p.P665S	1.000	227	0%	350	43.1%	0	-	benign(0.001)	tolerated(0.82)	neutral(0.001)	superfamily_Kinase_like
GNL3L	54552	genome.wustl.edu	37	X	54569404	54569404	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_019067.5	+1	reviewed	p.E108G	0.994	236	0%	259	38.2%	15	100%	possibly_damaging(0.778)	tolerated(0.08)	deleterious(0.591)	NULL
GNL3L	54552	genome.wustl.edu	37	X	54574757	54574757	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_019067.5	+1	reviewed	p.N242K	1.000	206	0%	230	42.2%	13	0%	possibly_damaging(0.768)	deleterious(0)	deleterious(0.730)	superfamily_SSF52540
ITIH6	347365	genome.wustl.edu	37	X	54777672	54777672	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_198510.2	-1	reviewed	p.S1165Y	0.000	168	0%	249	20.1%	0	-	benign(0.032)	deleterious(0.01)	neutral(0.407)	HMMPfam_ITI_HC_C
ITIH6	347365	genome.wustl.edu	37	X	54784266	54784266	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_198510.2	-1	reviewed	p.Q747H	0.072	230	0%	327	46.2%	0	-	benign(0.02)	-	-	NULL
MAGED2	10916	genome.wustl.edu	37	X	54836277	54836277	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014599.4	+1	reviewed	p.K56N	0.000	98	1%	124	35.5%	41	0%	probably_damaging(0.995)	tolerated(0.14)	deleterious(0.707)	NULL
LOC100288052	100288052	genome.wustl.edu	37	X	54841923	54841923	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_002344195.1	-1	model	p.L77F	0.990	42	0%	65	50.8%	327	0.3%	-	-	-	NULL
TRO	7216	genome.wustl.edu	37	X	54955421	54955421	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001039705.1	+1	reviewed	p.P755H	0.001	64	0%	67	16.4%	2	0%	benign(0.127)	deleterious(0.02)	neutral(0.394)	NULL
TRO	7216	genome.wustl.edu	37	X	54955761	54955761	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001039705.1	+1	reviewed	p.S868	0.000	54	0%	74	47.3%	4	0%	-	-	-	NULL
TRO	7216	genome.wustl.edu	37	X	54957639	54957639	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016157.2	+1	reviewed	p.I663M	0.188	433	0.2%	550	46.2%	4	0%	probably_damaging(0.978)	tolerated(0.53)	neutral(0.428)	NULL
PAGE3	139793	genome.wustl.edu	37	X	55290300	55290300	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000374951	-1	known	p.E13*	0.001	377	0%	455	49%	0	-	-	-	-	HMMPfam_GAGE
USP51	158880	genome.wustl.edu	37	X	55514189	55514189	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_201286.3	-1	validated	p.K395T	1.000	190	0%	244	18.9%	0	-	benign(0.099)	tolerated(0.24)	neutral(0.045)	HMMPfam_UCH,superfamily_SSF54001
RRAGB	10325	genome.wustl.edu	37	X	55745778	55745778	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016656.3	+1	validated	p.K42Q	1.000	562	0%	629	44.2%	3	100%	benign(0.181)	deleterious(0.01)	neutral(0.422)	superfamily_P-loop containing nucleoside triphosphate hydrolases
RRAGB	10325	genome.wustl.edu	37	X	55757993	55757993	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016656.3	+1	validated	p.L192M	1.000	100	0%	102	21.6%	6	0%	possibly_damaging(0.599)	deleterious(0.02)	deleterious(0.591)	HMMPfam_Gtr1_RagA,superfamily_P-loop containing nucleoside triphosphate hydrolases
KLF8	11279	genome.wustl.edu	37	X	56291866	56291866	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007250.4	+1	reviewed	p.K112R	0.112	152	0%	171	35.1%	3	0%	benign(0.002)	tolerated(0.19)	neutral(0.050)	NULL
KLF8	11279	genome.wustl.edu	37	X	56292145	56292145	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007250.4	+1	reviewed	p.L205R	1.000	89	0%	95	47.4%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
UBQLN2	29978	genome.wustl.edu	37	X	56590444	56590444	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_013444.3	+1	reviewed	p.F46	1.000	24	0%	32	50%	5	0%	-	-	-	HMMPfam_ubiquitin,HMMSmart_SM00213,superfamily_Ubiquitin-like
UBQLN2	29978	genome.wustl.edu	37	X	56591086	56591086	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_013444.3	+1	reviewed	p.S260	1.000	102	0%	114	45.6%	13	0%	-	-	-	NULL
ZXDA	7789	genome.wustl.edu	37	X	57935325	57935325	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007156.4	-1	reviewed	p.F510	0.935	172	0.6%	222	43.7%	2	50%	-	-	-	HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZXDA	7789	genome.wustl.edu	37	X	57935422	57935422	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_007156.4	-1	reviewed	p.R478Q	1.000	144	0.7%	177	46.9%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF57667
FAM123B	139285	genome.wustl.edu	37	X	63410818	63410818	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152424.3	-1	reviewed	p.F783	0.680	44	0%	59	15.3%	6	0%	-	-	-	NULL
FAM123B	139285	genome.wustl.edu	37	X	63411783	63411783	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152424.3	-1	reviewed	p.E462*	1.000	205	0%	205	55.1%	12	0%	-	-	-	HMMPfam_WTX
ASB12	142689	genome.wustl.edu	37	X	63445505	63445505	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000361287	-1	known	p.K9T	0.996	83	0%	85	47.1%	5	100%	probably_damaging(0.99)	deleterious(0.03)	deleterious(0.806)	NULL
ZC3H12B	340554	genome.wustl.edu	37	X	64717088	64717088	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001010888.3	+1	reviewed	p.D218Y	1.000	210	0%	237	20.3%	0	-	possibly_damaging(0.872)	deleterious(0.05)	deleterious(0.684)	NULL
ZC3H12B	340554	genome.wustl.edu	37	X	64722044	64722044	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001010888.3	+1	reviewed	p.S478L	1.000	179	0%	192	43.2%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
LOC100129585	100129585	genome.wustl.edu	37	X	65176315	65176315	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_001721365.2	-1	model	p.E28K	1.000	124	0%	187	48.1%	0	-	-	-	-	NULL
LOC100288788	100288788	genome.wustl.edu	37	X	65176965	65176965	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_002343822.1	-1	model	p.E25G	1.000	245	0%	328	36%	0	-	-	-	-	HMMPfam_RRM_1,HMMSmart_SM00360,HMMSmart_SM00361,superfamily_RNA-binding domain RBD
HEPH	9843	genome.wustl.edu	37	X	65390484	65390484	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_138737.3	+1	reviewed	p.A27	0.203	128	0%	156	47.4%	3	0%	-	-	-	superfamily_Cupredoxins
HEPH	9843	genome.wustl.edu	37	X	65392377	65392377	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_138737.3	+1	reviewed	p.K119N	1.000	119	0%	126	38.1%	2	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_Cupredoxins
AR	367	genome.wustl.edu	37	X	66765039	66765039	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000044.2	+1	reviewed	p.K17N	1.000	32	0%	37	59.5%	4	0%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_Androgen_recep
OPHN1	4983	genome.wustl.edu	37	X	67412828	67412828	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002547.2	-1	reviewed	p.K403N	1.000	170	0%	239	43.1%	2	0%	benign(0.002)	tolerated(0.65)	neutral(0.003)	HMMPfam_RhoGAP,HMMSmart_RhoGAP,superfamily_Rho_GAP
YIPF6	286451	genome.wustl.edu	37	X	67733244	67733244	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_173834.2	+1	provisional	p.D88Y	1.000	328	0%	369	46.6%	2	100%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_Yip1
EFNB1	1947	genome.wustl.edu	37	X	68058492	68058492	+	Missense_Mutation	SNP	C	C	T	rs104894801	byCluster	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004429.4	+1	reviewed	p.P54L	0.999	51	0%	71	38%	48	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Ephrin,superfamily_Cupredoxin
PJA1	64219	genome.wustl.edu	37	X	68382671	68382671	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_145119.3	-1	reviewed	p.P137	0.066	147	0%	184	40.2%	11	0%	-	-	-	NULL
FAM155B	27112	genome.wustl.edu	37	X	68725597	68725597	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_015686.2	+1	validated	p.E158K	0.315	25	0%	36	55.6%	0	-	benign(0.15)	tolerated(0.31)	neutral(0.040)	NULL
IGBP1	3476	genome.wustl.edu	37	X	69385724	69385724	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001551.2	+1	reviewed	p.E305*	0.000	496	0%	575	41.6%	110	0%	-	-	-	HMMPfam_TAP42
P2RY4	5030	genome.wustl.edu	37	X	69479145	69479145	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002565.3	-1	reviewed	p.F110	0.360	106	0%	146	24.7%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
DLG3	1741	genome.wustl.edu	37	X	69699018	69699018	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021120.3	+1	reviewed	p.S475L	1.000	195	0.5%	251	44.2%	16	100%	benign(0.055)	deleterious(0.01)	neutral(0.409)	superfamily_PDZ domain-like
TEX11	56159	genome.wustl.edu	37	X	69945180	69945180	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001003811.1	-1	reviewed	p.S301F	0.018	188	0%	208	12%	0	-	possibly_damaging(0.449)	deleterious(0.02)	deleterious(0.530)	HMMPfam_SPO22,superfamily_TPR-like
FOXO4	4303	genome.wustl.edu	37	X	70316776	70316776	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005938.3	+1	reviewed	p.R133H	0.981	114	0%	112	33.9%	18	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	"HMMPfam_Fork_head,HMMSmart_SM00339,superfamily_""Winged helix"" DNA-binding domain"
IL2RG	3561	genome.wustl.edu	37	X	70330376	70330376	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000206.2	-1	reviewed	p.Q144H	0.001	462	0%	558	45.9%	3	0%	possibly_damaging(0.951)	tolerated(0.19)	neutral(0.444)	superfamily_FN_III-like
MED12	9968	genome.wustl.edu	37	X	70343014	70343014	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005120.2	+1	reviewed	p.R519W	0.995	332	0%	463	46.4%	33	96.9%	probably_damaging(0.968)	deleterious(0.01)	deleterious(0.816)	NULL
MED12	9968	genome.wustl.edu	37	X	70344691	70344691	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005120.2	+1	reviewed	p.F684	1.000	266	0%	359	42.6%	6	0%	-	-	-	NULL
NONO	4841	genome.wustl.edu	37	X	70514313	70514313	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001145408.1	+1	reviewed	p.F195L	1.000	205	0%	261	43.3%	431	0%	possibly_damaging(0.492)	tolerated(0.05)	deleterious(0.509)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
NONO	4841	genome.wustl.edu	37	X	70517751	70517751	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001145408.1	+1	reviewed	p.R365Q	1.000	79	0%	127	44.1%	997	0.2%	unknown(0)	tolerated(0.1)	-	NULL
TAF1	6872	genome.wustl.edu	37	X	70612822	70612822	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004606.3	+1	reviewed	p.K1030T	1.000	286	0%	381	48.8%	4	0%	probably_damaging(0.998)	tolerated(0.07)	deleterious(0.793)	NULL
OGT	8473	genome.wustl.edu	37	X	70781713	70781713	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_181672.2	+1	reviewed	p.R647Q	0.992	157	0%	173	48%	19	89.4%	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	NULL
OGT	8473	genome.wustl.edu	37	X	70784453	70784453	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_181672.2	+1	reviewed	p.I813	0.997	155	0%	211	42.7%	41	87.8%	-	-	-	NULL
RGAG4	340526	genome.wustl.edu	37	X	71349920	71349920	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001024455.3	-1	validated	p.E491K	0.789	134	0%	154	48.1%	4	50%	probably_damaging(0.984)	deleterious(0.03)	deleterious(0.795)	NULL
RGAG4	340526	genome.wustl.edu	37	X	71350056	71350056	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001024455.3	-1	validated	p.E445D	0.057	381	0%	491	41.1%	3	0%	unknown(0)	deleterious(0.04)	-	NULL
ERCC6L	54821	genome.wustl.edu	37	X	71427452	71427452	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017669.2	-1	validated	p.H389N	1.000	116	0%	125	37.6%	2	100%	benign(0.081)	tolerated(0.17)	neutral(0.065)	HMMPfam_SNF2_N
CITED1	4435	genome.wustl.edu	37	X	71522080	71522080	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001144885.1	-1	reviewed	p.E51D	1.000	160	0%	206	43.2%	1	100%	possibly_damaging(0.791)	deleterious(0)	deleterious(0.741)	HMMPfam_CITED
RLIM	51132	genome.wustl.edu	37	X	73811991	73811991	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016120.3	-1	reviewed	p.R387C	1.000	170	0%	200	47.5%	17	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ABCB7	22	genome.wustl.edu	37	X	74284962	74284962	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004299.3	-1	reviewed	p.L593I	1.000	146	0%	246	32.9%	11	45.4%	benign(0.009)	tolerated(0.2)	neutral(0.050)	HMMPfam_ABC_tran,HMMSmart_AAA,superfamily_ABC_TM_1,superfamily_SSF52540
ABCB7	22	genome.wustl.edu	37	X	74289197	74289197	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004299.3	-1	reviewed	p.K487N	1.000	344	0%	408	24.5%	9	0%	benign(0.004)	deleterious(0.03)	neutral(0.364)	superfamily_ABC_TM_1,superfamily_SSF52540
ZDHHC15	158866	genome.wustl.edu	37	X	74641728	74641728	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_144969.2	-1	reviewed	p.K278N	1.000	337	0%	402	22.4%	0	-	probably_damaging(0.978)	tolerated(0.32)	neutral(0.445)	NULL
MAGEE1	57692	genome.wustl.edu	37	X	75649358	75649358	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020932.2	+1	reviewed	p.P345	0.000	11	0%	22	50%	1	100%	-	-	-	NULL
ATRX	546	genome.wustl.edu	37	X	76776376	76776376	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000489.3	-1	reviewed	p.L2364I	1.000	268	0%	265	23%	18	0%	probably_damaging(0.994)	deleterious(0.02)	deleterious(0.835)	NULL
ATRX	546	genome.wustl.edu	37	X	76875919	76875919	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000489.3	-1	reviewed	p.R1739Q	0.998	252	0%	319	44.8%	0	-	benign(0.272)	tolerated(0.06)	neutral(0.352)	HMMPfam_SNF2_N,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
ATRX	546	genome.wustl.edu	37	X	76937236	76937236	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000489.3	-1	reviewed	p.R1171I	0.187	435	0%	537	17.7%	3	100%	possibly_damaging(0.667)	tolerated(0.06)	deleterious(0.558)	NULL
ATRX	546	genome.wustl.edu	37	X	76939164	76939164	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000489.3	-1	reviewed	p.I528M	1.000	107	0%	140	40.7%	1	0%	probably_damaging(0.998)	tolerated(0.05)	deleterious(0.820)	NULL
ATRX	546	genome.wustl.edu	37	X	76940499	76940499	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000489.3	-1	reviewed	e8-1	1.000	322	0%	331	43.8%	0	-	-	-	-	-
ATRX	546	genome.wustl.edu	37	X	76972659	76972659	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000489.3	-1	reviewed	p.E28*	1.000	480	0%	612	43.5%	1	100%	-	-	-	NULL
MAGT1	84061	genome.wustl.edu	37	X	77130972	77130972	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032121.5	-1	reviewed	p.I107	1.000	274	0%	402	41.3%	99	0%	-	-	-	HMMPfam_OST3_OST6,superfamily_Thioredoxin-like
COX7B	1349	genome.wustl.edu	37	X	77160702	77160702	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001866.2	+1	reviewed	p.E63*	0.999	310	0%	344	43.9%	972	0%	-	-	-	HMMPfam_COX7B,superfamily_Mitochondrial cytochrome c oxidase subunit VIIb
ATP7A	538	genome.wustl.edu	37	X	77244038	77244038	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000052.4	+1	reviewed	p.E141K	0.132	166	0%	167	41.9%	0	-	benign(0.138)	tolerated(0.88)	neutral(0.011)	superfamily_HMA heavy metal-associated domain
ATP7A	538	genome.wustl.edu	37	X	77286986	77286986	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000052.4	+1	reviewed	p.R1067I	0.999	202	0%	258	11.2%	3	33.3%	benign(0.002)	tolerated(0.53)	neutral(0.007)	HMMPfam_Hydrolase,superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N,superfamily_Calcium ATPase transmembrane domain M
ZCCHC5	203430	genome.wustl.edu	37	X	77913022	77913022	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_152694.2	-1	reviewed	p.S299I	0.008	100	0%	115	44.3%	0	-	possibly_damaging(0.95)	tolerated(0.15)	deleterious(0.635)	NULL
GPR174	84636	genome.wustl.edu	37	X	78427250	78427250	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032553.1	+1	validated	p.S249N	1.000	222	0%	309	47.9%	0	-	benign(0.009)	tolerated(1)	neutral(0.001)	HMMPfam_7tm_1,superfamily_SSF81321
GPR174	84636	genome.wustl.edu	37	X	78427406	78427406	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032553.1	+1	validated	p.R301I	1.000	225	0%	284	49.3%	1	0%	possibly_damaging(0.773)	tolerated(0.08)	deleterious(0.587)	superfamily_SSF81321
ITM2A	9452	genome.wustl.edu	37	X	78616959	78616959	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004867.4	-1	reviewed	p.P190	1.000	100	0%	141	19.9%	1	0%	-	-	-	HMMPfam_BRICHOS
TBX22	50945	genome.wustl.edu	37	X	79282754	79282754	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001109878.1	+1	reviewed	e6-1	1.000	125	0%	137	39.4%	0	-	-	-	-	-
BRWD3	254065	genome.wustl.edu	37	X	79952303	79952303	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_153252.4	-1	reviewed	p.C1001	1.000	273	0%	349	41%	3	0%	-	-	-	NULL
BRWD3	254065	genome.wustl.edu	37	X	80064787	80064787	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_153252.4	-1	reviewed	p.I16	0.998	274	0%	340	47.6%	1	0%	-	-	-	NULL
HMGN5	79366	genome.wustl.edu	37	X	80370392	80370392	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_030763.2	-1	reviewed	p.R202I	0.000	1322	0.1%	1656	26.4%	1	0%	unknown(0)	tolerated(0.13)	-	NULL
CYLC1	1538	genome.wustl.edu	37	X	83128140	83128140	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021118.1	+1	provisional	p.P142T	0.000	66	0%	70	44.3%	0	-	unknown(0)	tolerated(0.99)	-	NULL
CYLC1	1538	genome.wustl.edu	37	X	83129111	83129111	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021118.1	+1	provisional	p.K465N	0.113	93	0%	109	50.5%	0	-	unknown(0)	tolerated(0.22)	-	NULL
CYLC1	1538	genome.wustl.edu	37	X	83129553	83129553	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021118.1	+1	provisional	p.E613*	0.988	100	0%	159	35.2%	0	-	-	-	-	NULL
RPS6KA6	27330	genome.wustl.edu	37	X	83357169	83357169	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014496.4	-1	reviewed	p.Y551C	1.000	211	0%	250	45.2%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
HDX	139324	genome.wustl.edu	37	X	83723879	83723879	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_144657.4	-1	validated	p.Q284H	1.000	159	0%	180	41.7%	0	-	benign(0)	deleterious(0.04)	neutral(0.349)	NULL
SATL1	340562	genome.wustl.edu	37	X	84347536	84347536	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000395409	-1	known	p.H463R	0.814	217	0.5%	294	46.3%	5	80%	benign(0.02)	tolerated(0.06)	neutral(0.324)	HMMPfam_Acetyltransf_1,superfamily_Acyl-CoA N-acyltransferases (Nat)
SATL1	340562	genome.wustl.edu	37	X	84349144	84349144	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001012980.2	-1	validated	p.Q435H	0.007	191	0%	244	14.8%	0	-	possibly_damaging(0.449)	deleterious(0.02)	deleterious(0.530)	superfamily_Acyl_CoA_acyltransferase
ZNF711	7552	genome.wustl.edu	37	X	84526108	84526108	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021998.4	+1	reviewed	p.L520	0.973	89	0%	142	50.7%	4	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
DACH2	117154	genome.wustl.edu	37	X	85769308	85769308	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_053281.3	+1	reviewed	p.R185H	1.000	136	0%	128	46.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DACH2	117154	genome.wustl.edu	37	X	86067986	86067986	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_053281.3	+1	reviewed	p.E456D	1.000	120	0%	124	49.2%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
CPXCR1	53336	genome.wustl.edu	37	X	88008631	88008631	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033048.5	+1	validated	p.L72	0.002	116	0%	157	43.9%	0	-	-	-	-	NULL
CPXCR1	53336	genome.wustl.edu	37	X	88008718	88008718	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033048.5	+1	validated	p.V101	0.000	130	0%	154	42.9%	0	-	-	-	-	NULL
PCDH11X	27328	genome.wustl.edu	37	X	91090574	91090574	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032968.3	+1	reviewed	p.Q24R	1.000	148	0%	207	13%	0	-	probably_damaging(0.999)	tolerated(0.08)	deleterious(0.790)	HMMPfam_Cadherin_2
PCDH11X	27328	genome.wustl.edu	37	X	91132049	91132049	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_032968.3	+1	reviewed	p.Q270H	0.994	157	0%	235	45.5%	0	-	benign(0.026)	deleterious(0.02)	neutral(0.384)	HMMPfam_Cadherin,superfamily_Cadherin-like
FAM133A	286499	genome.wustl.edu	37	X	92964656	92964656	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_173698.2	+1	validated	p.L80V	0.006	89	0%	109	51.4%	0	-	benign(0.009)	tolerated(0.4)	neutral(0.017)	NULL
DIAPH2	1730	genome.wustl.edu	37	X	96328002	96328002	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006729.4	+1	reviewed	p.E705*	1.000	361	0%	434	37.8%	0	-	-	-	-	HMMSmart_SM00498,HMMPfam_FH2,superfamily_Formin homology 2 domain (FH2 domain)
DIAPH2	1730	genome.wustl.edu	37	X	96639032	96639032	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006729.4	+1	reviewed	p.D1045A	1.000	205	0%	236	47.9%	1	0%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	HMMSmart_SM00498
PCDH19	57526	genome.wustl.edu	37	X	99662299	99662299	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001105243.1	-1	reviewed	p.L433M	1.000	185	0%	245	49%	11	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDH19	57526	genome.wustl.edu	37	X	99662906	99662906	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001105243.1	-1	reviewed	p.D230E	1.000	71	0%	111	45.9%	9	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin
TSPAN6	7105	genome.wustl.edu	37	X	99891636	99891636	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003270.2	-1	reviewed	p.S19N	0.998	167	0%	179	42.5%	50	0%	possibly_damaging(0.617)	tolerated(0.07)	deleterious(0.533)	HMMPfam_Tetraspannin
SYTL4	94121	genome.wustl.edu	37	X	99945597	99945597	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001129896.2	-1	reviewed	p.W227*	1.000	330	0%	442	47.7%	0	-	-	-	-	NULL
CSTF2	1478	genome.wustl.edu	37	X	100075462	100075462	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001325.2	+1	reviewed	p.F19L	0.997	149	0%	172	43%	7	0%	possibly_damaging(0.805)	deleterious(0)	deleterious(0.748)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
CSTF2	1478	genome.wustl.edu	37	X	100078981	100078981	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001325.2	+1	reviewed	p.P184L	1.000	351	0%	489	47%	18	94.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CSTF2	1478	genome.wustl.edu	37	X	100081744	100081744	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001325.2	+1	reviewed	p.G275E	1.000	165	0%	177	42.4%	15	0%	possibly_damaging(0.744)	deleterious(0.01)	deleterious(0.679)	NULL
CSTF2	1478	genome.wustl.edu	37	X	100093317	100093317	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001325.2	+1	reviewed	p.K567N	0.997	191	0%	218	45.9%	2	0%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
TMEM35	59353	genome.wustl.edu	37	X	100349847	100349847	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021637.2	+1	validated	p.E136K	1.000	124	0%	192	42.7%	0	-	possibly_damaging(0.788)	tolerated(0.13)	deleterious(0.547)	NULL
DRP2	1821	genome.wustl.edu	37	X	100503109	100503109	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001939.2	+1	reviewed	p.E428D	1.000	191	0%	197	45.2%	0	-	benign(0.002)	tolerated(0.41)	neutral(0.015)	HMMPfam_efhand_1,superfamily_SSF47473
TAF7L	54457	genome.wustl.edu	37	X	100537354	100537354	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024885.3	-1	reviewed	p.E209*	0.394	449	0%	550	45.8%	0	-	-	-	-	HMMPfam_TAFII55_N
TAF7L	54457	genome.wustl.edu	37	X	100541607	100541607	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_024885.3	-1	reviewed	p.S120Y	0.770	265	0%	358	46.6%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_TAFII55_N
HNRNPH2	3188	genome.wustl.edu	37	X	100666979	100666979	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001032393.1	+1	reviewed	p.M1I	1.000	129	0%	200	46.5%	116	0.8%	-	-	-	NULL
ARMCX1	51309	genome.wustl.edu	37	X	100808974	100808974	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016608.1	+1	reviewed	p.F354C	1.000	122	0.8%	119	39.5%	0	-	probably_damaging(0.983)	deleterious(0)	deleterious(0.873)	HMMPfam_DUF634,superfamily_ARM-type_fold
ZMAT1	84460	genome.wustl.edu	37	X	101138878	101138878	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001011657.2	-1	reviewed	p.N507K	0.932	494	0.2%	641	24.2%	1	100%	probably_damaging(0.995)	tolerated(0.35)	deleterious(0.478)	NULL
ZMAT1	84460	genome.wustl.edu	37	X	101159274	101159274	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001011657.2	-1	reviewed	p.E51*	0.105	333	0%	413	18.4%	0	-	-	-	-	NULL
NXF2	56001	genome.wustl.edu	37	X	101576707	101576707	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017809.3	+1	reviewed	p.S401	0.093	456	0.2%	575	7.7%	0	-	-	-	-	HMMPfam_NTF2,superfamily_SSF54427
NXF2B	728343	genome.wustl.edu	37	X	101623489	101623489	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001099686.1	-1	provisional	p.Q229H	0.863	791	0%	1000	9.7%	0	-	possibly_damaging(0.731)	tolerated(0.08)	deleterious(0.567)	superfamily_SSF52058
ARMCX5	64860	genome.wustl.edu	37	X	101857364	101857364	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_022838.3	+1	validated	p.E99*	0.054	153	0%	233	44.2%	22	0%	-	-	-	NULL
GPRASP1	9737	genome.wustl.edu	37	X	101910539	101910539	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001099410.1	+1	reviewed	p.I566	0.000	60	0%	54	44.4%	3	0%	-	-	-	NULL
GPRASP1	9737	genome.wustl.edu	37	X	101910580	101910580	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001099410.1	+1	reviewed	p.F580S	0.014	65	0%	67	44.8%	2	0%	probably_damaging(0.991)	deleterious(0.05)	deleterious(0.789)	NULL
NGFRAP1	27018	genome.wustl.edu	37	X	102632645	102632645	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_206915.1	+1	validated	p.E76*	1.000	292	0%	418	40.4%	236	80.9%	-	-	-	HMMPfam_BEX
MORF4L2	9643	genome.wustl.edu	37	X	102931603	102931603	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001142418.1	-1	validated	p.R118I	1.000	144	0%	168	17.3%	23	21.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MRG
MORF4L2	9643	genome.wustl.edu	37	X	102931671	102931671	+	Silent	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001142418.1	-1	validated	p.P95	0.975	131	0%	118	41.5%	33	84.8%	-	-	-	HMMPfam_MRG
TMEM31	203562	genome.wustl.edu	37	X	102968863	102968863	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_182541.2	+1	validated	p.F148L	0.000	101	0%	125	44.8%	0	-	unknown(0)	-	-	NULL
LOC100287881	100287881	genome.wustl.edu	37	X	102979598	102979598	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_002343835.1	+1	model	p.Q71H	0.000	124	0%	154	44.2%	0	-	-	-	-	NULL
IL1RAPL2	26280	genome.wustl.edu	37	X	104440353	104440353	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017416.1	+1	reviewed	p.R93S	0.996	131	0%	179	42.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00409,superfamily_Immunoglobulin
IL1RAPL2	26280	genome.wustl.edu	37	X	104984661	104984661	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017416.1	+1	reviewed	p.A342V	1.000	126	0%	140	36.4%	0	-	probably_damaging(0.986)	tolerated(0.07)	deleterious(0.754)	HMMSmart_SM00409,superfamily_Immunoglobulin
NRK	203447	genome.wustl.edu	37	X	105150432	105150432	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_198465.2	+1	validated	p.E291K	1.000	196	0%	246	22.4%	0	-	probably_damaging(0.959)	tolerated(0.11)	deleterious(0.674)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
NRK	203447	genome.wustl.edu	37	X	105156705	105156705	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_198465.2	+1	validated	p.I769M	0.993	115	0%	115	44.3%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	superfamily_p53-like transcription factors
NRK	203447	genome.wustl.edu	37	X	105178434	105178434	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_198465.2	+1	validated	p.I1166T	0.823	252	0%	338	45.9%	0	-	probably_damaging(0.959)	deleterious(0.02)	deleterious(0.786)	NULL
MUM1L1	139221	genome.wustl.edu	37	X	105449764	105449764	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000337685	+1	known	p.E113D	0.002	166	0%	241	41.9%	0	-	benign(0.026)	tolerated(0.4)	neutral(0.017)	NULL
LOC644504	644504	genome.wustl.edu	37	X	105570846	105570846	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_001128075.2	+1	model	p.R75Q	0.999	100	0%	132	42.4%	0	-	-	-	-	HMMPfam_CHGN,superfamily_Nucleotide-diphospho-sugar transferases
CXorf57	55086	genome.wustl.edu	37	X	105868419	105868419	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018015.5	+1	validated	p.L296I	0.987	398	0%	520	40.2%	0	-	possibly_damaging(0.829)	tolerated(0.7)	neutral(0.317)	superfamily_Nucleic acid-binding proteins
CXorf57	55086	genome.wustl.edu	37	X	105881243	105881243	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000416885	+1	known	p.F554L	0.000	24	0%	21	61.9%	0	-	unknown(0)	-	-	NULL
CXorf57	55086	genome.wustl.edu	37	X	105905503	105905503	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018015.5	+1	validated	p.R746Q	0.211	184	0%	220	38.6%	0	-	probably_damaging(0.999)	tolerated(0.14)	deleterious(0.740)	NULL
RNF128	79589	genome.wustl.edu	37	X	106016208	106016208	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_194463.1	+1	reviewed	p.Q184K	1.000	431	0%	483	28.2%	0	-	benign(0.005)	tolerated(0.36)	neutral(0.020)	superfamily_Transferrin receptor ectodomain apical domain
TBC1D8B	54885	genome.wustl.edu	37	X	106083903	106083903	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017752.2	+1	validated	p.A503V	1.000	118	0%	153	43.8%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p
TBC1D8B	54885	genome.wustl.edu	37	X	106117097	106117097	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017752.2	+1	validated	p.E1089*	1.000	89	0%	91	47.3%	0	-	-	-	-	NULL
CXorf41	139212	genome.wustl.edu	37	X	106462194	106462194	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_173494.1	+1	validated	p.I109	0.779	246	0.4%	334	37.1%	0	-	-	-	-	NULL
PRPS1	5631	genome.wustl.edu	37	X	106890932	106890932	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002764.3	+1	reviewed	p.E267	1.000	248	0%	338	42%	51	0%	-	-	-	superfamily_PRTase-like
TSC22D3	1831	genome.wustl.edu	37	X	107018368	107018368	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_198057.2	-1	reviewed	p.I94	0.999	127	0%	207	49.8%	3	33.3%	-	-	-	NULL
MID2	11043	genome.wustl.edu	37	X	107084341	107084341	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012216.3	+1	reviewed	p.D149G	1.000	44	0%	60	53.3%	1	0%	benign(0.184)	deleterious(0.02)	neutral(0.400)	HMMSmart_SM00336
MID2	11043	genome.wustl.edu	37	X	107169331	107169331	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012216.3	+1	reviewed	p.P535	0.998	98	0%	107	43%	0	-	-	-	-	NULL
VSIG1	340547	genome.wustl.edu	37	X	107301384	107301384	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_182607.4	+1	reviewed	p.S56P	0.002	307	0%	383	46.5%	1	0%	possibly_damaging(0.774)	tolerated(0.16)	neutral(0.348)	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
COL4A6	1288	genome.wustl.edu	37	X	107413943	107413943	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001847.2	-1	reviewed	p.F1131Y	0.206	206	0%	251	21.5%	0	-	possibly_damaging(0.642)	tolerated(1)	neutral(0.225)	NULL
ACSL4	2182	genome.wustl.edu	37	X	108902742	108902742	+	Splice_Site	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_022977.2	-1	reviewed	e13-2	1.000	222	0%	276	43.5%	0	-	-	-	-	-
ACSL4	2182	genome.wustl.edu	37	X	108926474	108926474	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_022977.2	-1	reviewed	p.K81T	1.000	374	0%	490	42.9%	2	0%	probably_damaging(0.986)	tolerated(0.1)	deleterious(0.721)	superfamily_Acetyl-CoA synthetase-like
PAK3	5063	genome.wustl.edu	37	X	110366480	110366480	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001128168.1	+1	reviewed	p.S50Y	1.000	230	0%	301	45.8%	1	0%	possibly_damaging(0.609)	tolerated(0.07)	deleterious(0.530)	NULL
CAPN6	827	genome.wustl.edu	37	X	110507060	110507060	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014289.3	-1	reviewed	p.E35D	1.000	407	0%	551	46.6%	65	0%	benign(0.158)	tolerated(0.52)	neutral(0.022)	HMMPfam_Peptidase_C2,HMMSmart_CysPc,superfamily_SSF54001
DCX	1641	genome.wustl.edu	37	X	110644244	110644244	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000555.2	-1	reviewed	p.K308Q	1.000	142	0%	194	18%	0	-	possibly_damaging(0.948)	deleterious(0.01)	deleterious(0.796)	HMMPfam_DCX,HMMSmart_SM00537,superfamily_Doublecortin (DC)
ALG13	79868	genome.wustl.edu	37	X	110996023	110996023	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000394780	+1	known	p.K980*	1.000	379	0%	435	45.7%	7	0%	-	-	-	NULL
TRPC5	7224	genome.wustl.edu	37	X	111020172	111020172	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012471.2	-1	reviewed	p.R764I	1.000	35	0%	47	40.4%	0	-	probably_damaging(0.956)	deleterious(0)	deleterious(0.844)	NULL
TRPC5	7224	genome.wustl.edu	37	X	111090573	111090573	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012471.2	-1	reviewed	p.S490L	1.000	139	0%	211	45.5%	0	-	probably_damaging(0.989)	tolerated(0.32)	neutral(0.464)	HMMPfam_Ion_trans
TRPC5	7224	genome.wustl.edu	37	X	111195456	111195456	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012471.2	-1	reviewed	p.C65R	1.000	90	0%	118	18.6%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	superfamily_Ankyrin repeat
MIR1912	100302144	genome.wustl.edu	37	X	113886072	113886072	+	RNA	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000410389	+1	known	NULL	0.989	219	0%	253	43.1%	0	-	-	-	-	-
HTR2C	3358	genome.wustl.edu	37	X	114141923	114141923	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000868.2	+1	reviewed	p.L441*	0.898	160	0%	180	38.9%	0	-	-	-	-	NULL
IL13RA2	3598	genome.wustl.edu	37	X	114250258	114250258	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000640.2	-1	reviewed	p.R74Q	0.992	359	0%	475	45.1%	0	-	probably_damaging(0.995)	tolerated(0.39)	deleterious(0.474)	superfamily_FN_III-like
LRCH2	57631	genome.wustl.edu	37	X	114400443	114400443	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020871.3	-1	validated	p.D387Y	1.000	338	0%	439	41%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
RBMXL3	139804	genome.wustl.edu	37	X	114424163	114424163	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001145346.1	+1	validated	p.F53	0.996	70	0%	61	42.6%	0	-	-	-	-	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928
RBMXL3	139804	genome.wustl.edu	37	X	114425829	114425829	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001145346.1	+1	validated	p.N609H	0.929	46	0%	59	52.5%	0	-	benign(0.095)	deleterious(0)	neutral(0.452)	NULL
LOC642357	642357	genome.wustl.edu	37	X	114937792	114937792	+	RNA	SNP	T	T	G	rs189426641	by1000genomes	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XR_016681.3	+1	model	NULL	1.000	118	0%	206	44.2%	0	-	-	-	-	-
KLHL13	90293	genome.wustl.edu	37	X	117043931	117043931	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_033495.3	-1	reviewed	p.L233F	1.000	53	0%	72	41.7%	15	6.6%	benign(0.04)	deleterious(0.04)	neutral(0.351)	HMMPfam_BACK
WDR44	54521	genome.wustl.edu	37	X	117582934	117582934	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_019045.4	+1	reviewed	p.R909I	1.000	106	0%	112	33.9%	0	-	benign(0.045)	deleterious(0.04)	neutral(0.351)	NULL
DOCK11	139818	genome.wustl.edu	37	X	117788651	117788651	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_144658.3	+1	validated	p.E1594D	1.000	153	0%	184	23.4%	1	0%	benign(0.318)	tolerated(0.11)	neutral(0.371)	NULL
DOCK11	139818	genome.wustl.edu	37	X	117805046	117805046	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_144658.3	+1	validated	p.E1713*	1.000	388	0%	405	40.5%	0	-	-	-	-	NULL
IL13RA1	3597	genome.wustl.edu	37	X	117895259	117895259	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000371642	+1	known	p.F279L	0.028	220	0%	235	40.9%	0	-	probably_damaging(0.965)	-	-	NULL
LOC727838	727838	genome.wustl.edu	37	X	118207814	118207814	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_002343842.1	+1	model	p.A198V	0.000	24	0%	32	40.6%	0	-	-	-	-	NULL
ENSG00000248857	0	genome.wustl.edu	37	X	118221377	118221377	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000440399	-1	known	p.E679*	0.000	66	0%	66	25.8%	0	-	probably_damaging(0.991)	deleterious(0.05)	deleterious(0.789)	NULL
KIAA1210	57481	genome.wustl.edu	37	X	118238966	118238966	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_020721.1	-1	validated	p.T353A	0.002	170	0%	230	40.9%	0	-	benign(0.265)	-	-	NULL
PGRMC1	10857	genome.wustl.edu	37	X	118370540	118370540	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006667.3	+1	reviewed	p.D72N	1.000	4	0.000	14	0.500	74	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cyt-b5,superfamily_Cytochrome b5-like heme/steroid binding domain
SLC25A43	203427	genome.wustl.edu	37	X	118540640	118540640	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_145305.2	+1	reviewed	p.R165*	1.000	186	0%	222	44.1%	0	-	-	-	-	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr
UPF3B	65109	genome.wustl.edu	37	X	118977250	118977250	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_080632.1	-1	reviewed	p.K162E	1.000	675	0%	784	19.5%	1	0%	benign(0.172)	tolerated(1)	neutral(0.015)	HMMPfam_Smg4_UPF3
UPF3B	65109	genome.wustl.edu	37	X	118979167	118979167	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_080632.1	-1	reviewed	p.D155N	1.000	402	0.2%	472	42.2%	0	-	benign(0.099)	deleterious(0.04)	neutral(0.356)	HMMPfam_Smg4_UPF3
RHOXF1	158800	genome.wustl.edu	37	X	119249588	119249588	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_139282.1	-1	provisional	p.R62H	0.000	12	0%	21	42.9%	0	-	benign(0.008)	deleterious(0)	neutral(0.445)	NULL
FAM70A	55026	genome.wustl.edu	37	X	119410874	119410874	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017938.3	-1	validated	p.E205K	1.000	150	0%	205	42.4%	1	0%	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	NULL
FAM70A	55026	genome.wustl.edu	37	X	119419526	119419526	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017938.3	-1	validated	p.S150F	1.000	265	0%	304	36.5%	0	-	benign(0.09)	deleterious(0.03)	neutral(0.371)	NULL
ATP1B4	23439	genome.wustl.edu	37	X	119500468	119500468	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001142447.2	+1	reviewed	p.S51L	0.001	281	0%	274	44.5%	0	-	benign(0)	tolerated(0.13)	neutral(0.253)	NULL
CUL4B	8450	genome.wustl.edu	37	X	119672046	119672046	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003588.3	-1	reviewed	p.T642I	1.000	226	0%	296	40.5%	12	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cullin,HMMSmart_SM00182,superfamily_Cullin homology domain
CUL4B	8450	genome.wustl.edu	37	X	119677973	119677973	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003588.3	-1	reviewed	p.R408K	1.000	318	0%	315	41.6%	4	0%	benign(0.001)	tolerated(0.33)	neutral(0.024)	HMMPfam_Cullin,superfamily_Cullin repeat
CUL4B	8450	genome.wustl.edu	37	X	119691816	119691816	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003588.3	-1	reviewed	p.S230I	1.000	605	0%	820	43.2%	3	0%	possibly_damaging(0.877)	deleterious(0.01)	deleterious(0.747)	HMMPfam_Cullin,superfamily_Cullin repeat
CUL4B	8450	genome.wustl.edu	37	X	119694270	119694270	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003588.3	-1	reviewed	p.S93L	1.000	129	0%	104	43.3%	27	0%	benign(0.002)	tolerated(0.12)	neutral(0.261)	NULL
GLUD2	2747	genome.wustl.edu	37	X	120182230	120182230	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012084.3	+1	reviewed	p.R231Q	0.934	204	0%	218	43.1%	6	100%	probably_damaging(0.998)	tolerated(0.09)	deleterious(0.771)	HMMPfam_ELFV_dehydrog_N,superfamily_SSF53223
GLUD2	2747	genome.wustl.edu	37	X	120182503	120182503	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012084.3	+1	reviewed	p.R322H	0.944	757	0.1%	823	41.7%	21	0%	benign(0.172)	deleterious(0.01)	neutral(0.421)	HMMPfam_ELFV_dehydrog,superfamily_NAD(P)-bd
GLUD2	2747	genome.wustl.edu	37	X	120182660	120182660	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_012084.3	+1	reviewed	p.V374	0.917	318	0%	370	12.4%	4	75%	-	-	-	HMMPfam_ELFV_dehydrog,superfamily_NAD(P)-bd
GRIA3	2892	genome.wustl.edu	37	X	122561851	122561851	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000264357	+1	known	p.S646Y	1.000	346	0%	472	44.3%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMPfam_Lig_chan,HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II
THOC2	57187	genome.wustl.edu	37	X	122747998	122747998	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001081550.1	-1	validated	p.E1452*	1.000	517	0%	660	40.9%	9	0%	-	-	-	NULL
THOC2	57187	genome.wustl.edu	37	X	122758451	122758451	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001081550.1	-1	validated	p.L1043I	1.000	348	0%	380	40%	16	0%	probably_damaging(0.968)	deleterious(0)	deleterious(0.855)	NULL
THOC2	57187	genome.wustl.edu	37	X	122758465	122758465	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001081550.1	-1	validated	p.R1038Q	1.000	373	0%	436	17%	11	54.5%	possibly_damaging(0.922)	deleterious(0)	deleterious(0.816)	NULL
THOC2	57187	genome.wustl.edu	37	X	122779199	122779199	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001081550.1	-1	validated	p.D472Y	1.000	665	0.2%	708	43.1%	10	0%	benign(0.132)	deleterious(0.04)	neutral(0.360)	NULL
XIAP	331	genome.wustl.edu	37	X	123025126	123025126	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001167.2	+1	reviewed	p.I339T	1.000	182	0%	246	43.1%	6	100%	benign(0.31)	deleterious(0)	deleterious(0.541)	superfamily_SSF57924
STAG2	10735	genome.wustl.edu	37	X	123176489	123176489	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001042749.1	+1	validated	p.F152	1.000	224	0%	294	46.6%	34	0%	-	-	-	NULL
STAG2	10735	genome.wustl.edu	37	X	123200073	123200073	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001042749.1	+1	validated	p.L715	0.012	120	0%	125	38.4%	10	0%	-	-	-	superfamily_ARM-type_fold
ODZ1	10178	genome.wustl.edu	37	X	123514604	123514604	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014253.3	-1	reviewed	p.A2654T	0.993	282	0%	455	45.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ODZ1	10178	genome.wustl.edu	37	X	123615582	123615582	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014253.3	-1	reviewed	p.G1310C	1.000	51	0%	54	53.7%	0	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	superfamily_SSF101898
ODZ1	10178	genome.wustl.edu	37	X	124028191	124028191	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_014253.3	-1	reviewed	p.F163L	1.000	298	0%	362	42%	0	-	benign(0.001)	tolerated(0.53)	neutral(0.007)	HMMPfam_Ten_N
DCAF12L2	340578	genome.wustl.edu	37	X	125298868	125298868	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001013628.2	-1	reviewed	p.R347Q	0.567	33	0%	27	48.1%	2	0%	benign(0.333)	deleterious(0.03)	deleterious(0.469)	HMMSmart_WD40,superfamily_WD40_like
OCRL	4952	genome.wustl.edu	37	X	128710312	128710312	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000276.3	+1	reviewed	p.S633Y	1.000	196	0%	241	33.2%	11	0%	benign(0.141)	tolerated(0.19)	neutral(0.061)	NULL
OCRL	4952	genome.wustl.edu	37	X	128721050	128721050	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000276.3	+1	reviewed	p.E737	1.000	214	0%	256	11.3%	2	50%	-	-	-	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
ZDHHC9	51114	genome.wustl.edu	37	X	128947682	128947682	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001008222.2	-1	reviewed	p.F215L	1.000	242	0%	259	42.9%	14	0%	benign(0.119)	deleterious(0.04)	neutral(0.358)	NULL
UTP14A	10813	genome.wustl.edu	37	X	129059938	129059938	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006649.3	+1	reviewed	p.A598D	1.000	413	0%	510	42.4%	9	88.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Utp14
UTP14A	10813	genome.wustl.edu	37	X	129063378	129063378	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006649.3	+1	reviewed	p.G704*	1.000	232	0%	277	42.6%	7	0%	-	-	-	HMMPfam_Utp14
BCORL1	63035	genome.wustl.edu	37	X	129148976	129148976	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021946.3	+1	reviewed	p.R743H	1.000	71	0%	96	43.8%	3	0%	benign(0.288)	deleterious(0)	deleterious(0.533)	NULL
BCORL1	63035	genome.wustl.edu	37	X	129156885	129156885	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000441294	+1	known	p.E643K	1.000	294	0%	354	42.7%	2	0%	-	-	-	NULL
AIFM1	9131	genome.wustl.edu	37	X	129273774	129273774	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004208.3	-1	reviewed	p.R285I	1.000	252	0%	328	27.4%	22	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pyr_redox_2,superfamily_FAD/NAD(P)-binding domain
AIFM1	9131	genome.wustl.edu	37	X	129289228	129289228	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_145812.2	-1	reviewed	p.R47I	1.000	222	0%	341	14.4%	0	-	possibly_damaging(0.538)	deleterious(0.01)	deleterious(0.588)	NULL
ZNF280C	55609	genome.wustl.edu	37	X	129349999	129349999	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017666.4	-1	validated	p.S535Y	1.000	255	0%	349	45%	1	0%	benign(0.027)	deleterious(0.01)	neutral(0.407)	NULL
ZNF280C	55609	genome.wustl.edu	37	X	129361732	129361732	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017666.4	-1	validated	p.S391*	1.000	388	0%	455	39.8%	2	0%	-	-	-	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355
SLC25A14	9016	genome.wustl.edu	37	X	129492670	129492670	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003951.2	+1	reviewed	p.I185	0.930	271	0%	329	41.9%	3	0%	-	-	-	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr
ARHGAP36	158763	genome.wustl.edu	37	X	130218897	130218897	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_144967.3	+1	validated	p.E272*	1.000	150	0%	190	39.5%	0	-	-	-	-	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
MST4	51765	genome.wustl.edu	37	X	131207098	131207098	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_016542.3	+1	reviewed	p.K401N	1.000	68	0%	100	15%	0	-	benign(0.001)	tolerated(0.45)	neutral(0.012)	NULL
FRMD7	90167	genome.wustl.edu	37	X	131234720	131234720	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_194277.2	-1	reviewed	p.F28L	1.000	167	0%	226	26.1%	0	-	benign(0.203)	tolerated(0.51)	neutral(0.028)	HMMPfam_FERM_N,HMMSmart_B41,superfamily_SSF54236
FRMD7	90167	genome.wustl.edu	37	X	131261831	131261831	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_194277.2	-1	reviewed	p.K14	1.000	203	0%	228	36.4%	0	-	-	-	-	HMMPfam_FERM_N,HMMSmart_B41,superfamily_SSF54236
MBNL3	55796	genome.wustl.edu	37	X	131520813	131520813	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_018388.3	-1	reviewed	p.L266	1.000	264	0%	389	43.7%	7	71.4%	-	-	-	NULL
USP26	83844	genome.wustl.edu	37	X	132159590	132159590	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_031907.1	-1	reviewed	p.E887*	0.975	201	0%	253	42.3%	0	-	-	-	-	NULL
USP26	83844	genome.wustl.edu	37	X	132162116	132162116	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_031907.1	-1	reviewed	p.G45*	0.033	148	0%	177	46.9%	0	-	-	-	-	NULL
GPC4	2239	genome.wustl.edu	37	X	132458185	132458185	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001448.2	-1	reviewed	p.S233R	0.961	69	0%	81	50.6%	69	0%	benign(0.001)	tolerated(1)	-	HMMPfam_Glypican
GPC3	2719	genome.wustl.edu	37	X	132888172	132888172	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004484.3	-1	reviewed	p.K123N	1.000	470	0.2%	468	44.2%	0	-	benign(0.429)	deleterious(0.03)	deleterious(0.504)	HMMPfam_Glypican
GPC3	2719	genome.wustl.edu	37	X	133119363	133119363	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004484.3	-1	reviewed	p.V38	1.000	23	0%	35	57.1%	0	-	-	-	-	HMMPfam_Glypican
CCDC160	347475	genome.wustl.edu	37	X	133379032	133379032	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001101357.1	+1	provisional	p.F68I	0.005	46	0%	59	40.7%	0	-	benign(0.067)	tolerated(0.4)	neutral(0.021)	NULL
PHF6	84295	genome.wustl.edu	37	X	133527979	133527979	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001015877.1	+1	reviewed	p.E139K	1.000	204	0.5%	233	51.9%	4	100%	benign(0.011)	tolerated(0.18)	neutral(0.057)	NULL
FAM122B	159090	genome.wustl.edu	37	X	133927885	133927885	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_145284.5	-1	validated	p.T46I	0.951	372	0%	349	39.3%	9	0%	possibly_damaging(0.487)	tolerated(0.37)	neutral(0.181)	NULL
LOC100128949	100128949	genome.wustl.edu	37	X	134156053	134156053	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_001720075.2	+1	model	p.A114	0.000	16	0%	26	46.2%	39	0%	-	-	-	NULL
FAM127C	441518	genome.wustl.edu	37	X	134156309	134156309	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001078173.1	-1	validated	p.D61N	0.930	77	0%	108	45.4%	55	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DDX26B	203522	genome.wustl.edu	37	X	134703353	134703353	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_182540.4	+1	validated	p.L428	0.992	265	0%	313	44.4%	0	-	-	-	-	NULL
LOC644717	644717	genome.wustl.edu	37	X	134812059	134812059	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	XM_002343850.1	-1	model	p.K126N	0.022	142	0%	173	42.2%	0	-	-	-	-	NULL
SLC9A6	10479	genome.wustl.edu	37	X	135084305	135084305	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001042537.1	+1	reviewed	p.V278I	1.000	627	0%	742	38.5%	11	0%	possibly_damaging(0.5)	tolerated(0.05)	deleterious(0.512)	HMMPfam_Na_H_Exchanger
FHL1	2273	genome.wustl.edu	37	X	135292106	135292106	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000345434	+1	known	p.A322V	1.000	188	0%	233	40.3%	4	0%	possibly_damaging(0.775)	deleterious(0)	deleterious(0.733)	NULL
GPR112	139378	genome.wustl.edu	37	X	135405289	135405289	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_153834.3	+1	reviewed	p.R141	0.094	274	0%	311	43.7%	0	-	-	-	-	superfamily_ConA_like_lec_gl
GPR112	139378	genome.wustl.edu	37	X	135426670	135426670	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_153834.3	+1	reviewed	p.L269I	0.000	318	0%	389	46%	0	-	benign(0.231)	deleterious(0.04)	neutral(0.372)	NULL
GPR112	139378	genome.wustl.edu	37	X	135429707	135429707	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_153834.3	+1	reviewed	p.K1281M	0.000	101	0%	134	42.5%	0	-	probably_damaging(0.956)	deleterious(0.03)	deleterious(0.764)	NULL
GPR112	139378	genome.wustl.edu	37	X	135445720	135445720	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_153834.3	+1	reviewed	p.K2454N	0.999	251	0%	353	46.7%	0	-	benign(0.306)	deleterious(0)	deleterious(0.540)	NULL
BRS3	680	genome.wustl.edu	37	X	135574296	135574296	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001727.1	+1	validated	p.S321N	1.000	360	0%	482	45.2%	0	-	probably_damaging(0.979)	tolerated(0.16)	deleterious(0.481)	HMMPfam_7tm_1,superfamily_SSF81321
RBMX	27316	genome.wustl.edu	37	X	135958688	135958688	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002139.3	-1	reviewed	p.R172H	1.000	245	0%	335	40%	131	0%	probably_damaging(1)	tolerated(0.14)	deleterious(0.750)	NULL
GPR101	83550	genome.wustl.edu	37	X	136112390	136112390	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_054021.1	-1	validated	p.D482Y	0.975	183	0%	263	40.3%	0	-	possibly_damaging(0.822)	deleterious(0)	deleterious(0.756)	superfamily_Family A G protein-coupled receptor-like
GPR101	83550	genome.wustl.edu	37	X	136112631	136112631	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_054021.1	-1	validated	p.I401	1.000	192	0%	224	44.2%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ZIC3	7547	genome.wustl.edu	37	X	136649605	136649605	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003413.3	+1	reviewed	p.S252L	1.000	16	0%	20	55%	0	-	benign(0.02)	deleterious(0.03)	neutral(0.365)	NULL
ZIC3	7547	genome.wustl.edu	37	X	136649872	136649872	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003413.3	+1	reviewed	p.R341H	1.000	18	0%	21	47.6%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
F9	2158	genome.wustl.edu	37	X	138643958	138643958	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000133.3	+1	reviewed	p.L372I	0.633	123	0%	143	43.4%	0	-	possibly_damaging(0.722)	tolerated(0.19)	neutral(0.311)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
MCF2	4168	genome.wustl.edu	37	X	138708879	138708879	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001099855.1	-1	reviewed	p.L219M	0.998	226	0%	314	10.8%	0	-	probably_damaging(0.982)	deleterious(0.01)	deleterious(0.832)	superfamily_Spectrin
MCF2	4168	genome.wustl.edu	37	X	138711991	138711991	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001099855.1	-1	reviewed	p.F161V	1.000	223	0%	292	47.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ATP11C	286410	genome.wustl.edu	37	X	138828014	138828014	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_173694.4	-1	validated	p.K947R	1.000	94	0%	119	31.9%	5	0%	benign(0.001)	tolerated(0.3)	neutral(0.029)	NULL
ATP11C	286410	genome.wustl.edu	37	X	138864759	138864759	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000422228	-1	known	p.S188L	1.000	275	0.4%	389	49.4%	0	-	-	-	-	superfamily_Metal cation-transporting ATPase ATP-binding domain N
MAGEC3	139081	genome.wustl.edu	37	X	140969295	140969295	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_138702.1	+1	reviewed	p.A208T	0.000	236	0%	277	45.1%	0	-	unknown(0)	tolerated(0.06)	-	HMMPfam_MAGE
MAGEC3	139081	genome.wustl.edu	37	X	140984967	140984967	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_138702.1	+1	reviewed	p.E475*	0.001	180	0%	238	42.9%	0	-	-	-	-	HMMPfam_MAGE
MAGEC1	9947	genome.wustl.edu	37	X	140993461	140993461	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005462.4	+1	reviewed	p.D91N	0.938	131	0%	161	41.6%	0	-	unknown(0)	tolerated(0.22)	-	NULL
MAGEC1	9947	genome.wustl.edu	37	X	140996466	140996466	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005462.4	+1	reviewed	p.K1092N	0.000	141	0%	183	46.4%	0	-	benign(0)	tolerated(1)	-	NULL
SLITRK4	139065	genome.wustl.edu	37	X	142716414	142716414	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_173078.3	-1	reviewed	p.I837	0.879	158	0%	160	50%	1	0%	-	-	-	NULL
SLITRK4	139065	genome.wustl.edu	37	X	142717776	142717776	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_173078.3	-1	reviewed	p.H383	0.762	287	0%	318	46.5%	0	-	-	-	-	superfamily_L domain-like
SLITRK4	139065	genome.wustl.edu	37	X	142718717	142718717	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_173078.3	-1	reviewed	p.F70V	0.998	24	0%	47	48.9%	0	-	benign(0.001)	tolerated(0.29)	neutral(0.029)	superfamily_L domain-like
CXorf1	9142	genome.wustl.edu	37	X	144909266	144909266	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004709.2	+1	validated	p.I24T	0.000	202	0%	262	43.5%	0	-	benign(0.046)	-	-	NULL
AFF2	2334	genome.wustl.edu	37	X	147743947	147743947	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002025.3	+1	reviewed	p.I233	1.000	107	0%	123	41.5%	0	-	-	-	-	HMMPfam_AF-4
IDS	3423	genome.wustl.edu	37	X	148568513	148568513	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000202.5	-1	reviewed	p.E375K	0.001	129	0%	159	39.6%	37	81%	benign(0)	tolerated(0.55)	neutral(0.007)	superfamily_Alkaline phosphatase-like
CXorf40A	91966	genome.wustl.edu	37	X	148627414	148627414	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_178124.4	+1	validated	p.R80	0.093	181	0%	250	36%	26	0%	-	-	-	NULL
CXorf40B	541578	genome.wustl.edu	37	X	149101855	149101855	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001013845.1	-1	validated	p.R80	0.941	507	0%	670	13.3%	116	0%	-	-	-	NULL
MTM1	4534	genome.wustl.edu	37	X	149809883	149809883	+	Nonsense_Mutation	SNP	C	C	T	rs132630306		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000252.2	+1	reviewed	p.R224*	0.973	169	0%	292	43.5%	4	0%	-	-	-	HMMPfam_Myotub-related,superfamily_SSF52799
MTM1	4534	genome.wustl.edu	37	X	149814235	149814235	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000252.2	+1	reviewed	p.R253Q	0.999	234	0%	387	40.8%	3	0%	possibly_damaging(0.905)	deleterious(0.04)	deleterious(0.708)	HMMPfam_Myotub-related,superfamily_SSF52799
MTMR1	8776	genome.wustl.edu	37	X	149905241	149905241	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_003828.2	+1	reviewed	p.E411*	1.000	132	0%	141	36.2%	20	0%	-	-	-	HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
GPR50	9248	genome.wustl.edu	37	X	150348965	150348965	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004224.3	+1	reviewed	p.E304*	1.000	121	0%	123	44.7%	0	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
GPR50	9248	genome.wustl.edu	37	X	150349094	150349094	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004224.3	+1	reviewed	p.R347C	0.000	106	0%	153	51.6%	0	-	possibly_damaging(0.909)	deleterious(0)	deleterious(0.806)	NULL
GPR50	9248	genome.wustl.edu	37	X	150349744	150349744	+	Silent	SNP	G	G	A	rs187995722	by1000genomes	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004224.3	+1	reviewed	p.S563	0.021	26	0%	46	41.3%	0	-	-	-	-	NULL
PASD1	139135	genome.wustl.edu	37	X	150832809	150832809	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_173493.2	+1	reviewed	p.A354T	0.000	57	1.8%	67	58.2%	0	-	benign(0)	tolerated(0.59)	neutral(0.004)	NULL
PASD1	139135	genome.wustl.edu	37	X	150840747	150840747	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_173493.2	+1	reviewed	p.Q510H	0.018	188	0%	164	43.9%	0	-	unknown(0)	deleterious(0)	-	NULL
MAGEA4	4103	genome.wustl.edu	37	X	151092939	151092939	+	Missense_Mutation	SNP	C	C	T	rs190319017	by1000genomes	TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001011548.1	+1	reviewed	p.A268V	0.000	128	0%	193	42.5%	0	-	benign(0.117)	tolerated(0.07)	neutral(0.329)	HMMPfam_MAGE
GABRE	2564	genome.wustl.edu	37	X	151123939	151123939	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004961.3	-1	reviewed	p.I346	0.984	178	0.6%	236	46.6%	0	-	-	-	-	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
GABRE	2564	genome.wustl.edu	37	X	151124009	151124009	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004961.3	-1	reviewed	p.L323S	0.942	154	0%	196	38.3%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
GABRE	2564	genome.wustl.edu	37	X	151138730	151138730	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_004961.3	-1	reviewed	p.K67	0.000	155	0%	194	23.7%	0	-	-	-	-	NULL
TREX2	11219	genome.wustl.edu	37	X	152710647	152710647	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_080701.3	-1	reviewed	p.S81N	1.000	18	0%	29	41.4%	1	0%	benign(0.056)	tolerated(0.52)	neutral(0.012)	HMMSmart_EXOIII,superfamily_RNaseH_fold,HMMPfam_Exonuc_X-T
BGN	633	genome.wustl.edu	37	X	152771381	152771381	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001711.4	+1	reviewed	p.R138W	1.000	33	3%	41	48.8%	76	0%	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	superfamily_SSF52058
ATP2B3	492	genome.wustl.edu	37	X	152818575	152818575	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001001344.2	+1	reviewed	p.E636K	1.000	47	0%	66	45.5%	0	-	probably_damaging(0.989)	deleterious(0.01)	deleterious(0.845)	HMMPfam_Hydrolase,superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N,superfamily_Calcium ATPase transmembrane domain M
ATP2B3	492	genome.wustl.edu	37	X	152826285	152826285	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001001344.2	+1	reviewed	p.F997	0.990	303	0%	416	42.3%	3	0%	-	-	-	HMMPfam_Cation_ATPase_C,superfamily_Calcium ATPase transmembrane domain M
PLXNB3	5365	genome.wustl.edu	37	X	153032363	153032363	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_005393.2	+1	reviewed	p.L27	0.001	48	0%	57	47.4%	1	0%	-	-	-	NULL
RENBP	5973	genome.wustl.edu	37	X	153208502	153208502	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_002910.5	-1	reviewed	p.I164	0.014	13	0%	22	54.5%	6	0%	-	-	-	superfamily_Six-hairpin glycosidases
HCFC1	3054	genome.wustl.edu	37	X	153215785	153215785	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	ENST00000444191	-1	known	p.R547*	0.272	85	1.2%	127	43.3%	58	3.4%	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
FLNA	2316	genome.wustl.edu	37	X	153586612	153586612	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001110556.1	-1	reviewed	p.I1570	0.843	25	0%	39	48.7%	550	0%	-	-	-	HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin
FLNA	2316	genome.wustl.edu	37	X	153587852	153587852	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001110556.1	-1	reviewed	p.R1381M	1.000	193	0%	202	44.1%	334	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin
RPL10	6134	genome.wustl.edu	37	X	153629057	153629057	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_006013.3	+1	reviewed	p.K169N	1.000	231	0%	304	52.6%	1035	0%	possibly_damaging(0.455)	tolerated(0.21)	neutral(0.193)	superfamily_Ribosomal protein L10e
GDI1	2664	genome.wustl.edu	37	X	153667197	153667197	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001493.2	+1	reviewed	p.F80L	1.000	134	0%	194	38.1%	76	0%	benign(0.001)	tolerated(0.16)	neutral(0.059)	HMMPfam_GDI,superfamily_FAD/NAD(P)-binding domain
GDI1	2664	genome.wustl.edu	37	X	153670982	153670982	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001493.2	+1	reviewed	p.R436H	1.000	131	0%	173	41%	222	0%	probably_damaging(0.994)	tolerated(0.19)	deleterious(0.502)	HMMPfam_GDI
PLXNA3	55558	genome.wustl.edu	37	X	153698802	153698802	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_017514.3	+1	reviewed	p.F1668	0.984	40	0%	45	26.7%	56	55.3%	-	-	-	superfamily_Rho_GAP,HMMPfam_Plexin_cytopl
SLC10A3	8273	genome.wustl.edu	37	X	153716663	153716663	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001142392.1	-1	reviewed	p.S206L	1.000	33	0%	40	52.5%	27	0%	possibly_damaging(0.474)	deleterious(0.01)	deleterious(0.562)	HMMPfam_SBF
FAM3A	60343	genome.wustl.edu	37	X	153735162	153735162	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_021806.2	-1	validated	p.R225W	0.297	66	0%	87	52.9%	98	0%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	NULL
IKBKG	8517	genome.wustl.edu	37	X	153780392	153780392	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001099856.2	+1	reviewed	p.Q127*	1.000	37	0%	59	47.5%	3	100%	-	-	-	NULL
GAB3	139716	genome.wustl.edu	37	X	153944425	153944425	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001081573.1	-1	reviewed	p.F84	0.403	96	0%	122	40.2%	1	0%	-	-	-	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
DKC1	1736	genome.wustl.edu	37	X	153995316	153995316	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001363.3	+1	reviewed	p.G165W	1.000	195	0%	313	19.2%	42	0%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMPfam_TruB_N,superfamily_PsdUridine_synth_cat_dom
F8	2157	genome.wustl.edu	37	X	154088881	154088881	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000132.3	-1	reviewed	p.V2242	0.663	220	0%	273	12.5%	0	-	-	-	-	HMMPfam_F5_F8_type_C,HMMSmart_SM00231,PatternScan_FA58C_1,superfamily_Galactose-binding domain-like
F8	2157	genome.wustl.edu	37	X	154091388	154091388	+	Missense_Mutation	SNP	G	G	A	rs137852467		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000132.3	-1	reviewed	p.R2182C	1.000	275	0.4%	361	13%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_F5_F8_type_C,HMMSmart_SM00231,PatternScan_FA58C_2,superfamily_Galactose-binding domain-like
F8	2157	genome.wustl.edu	37	X	154132683	154132683	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000132.3	-1	reviewed	p.I1901	0.998	343	0%	429	43.6%	0	-	-	-	-	superfamily_Cupredoxins
F8	2157	genome.wustl.edu	37	X	154185258	154185258	+	Nonsense_Mutation	SNP	C	C	A	rs137852421		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_000132.3	-1	reviewed	p.E576*	1.000	255	0%	321	44.2%	0	-	-	-	-	superfamily_Cupredoxins
FUNDC2	65991	genome.wustl.edu	37	X	154261710	154261710	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_023934.3	+1	validated	p.L56F	1.000	200	0%	281	41.3%	52	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
CLIC2	1193	genome.wustl.edu	37	X	154508596	154508596	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17Q-01A-11D-A12J-09	TCGA-D1-A17Q-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	01677a4d-e4b8-4e45-a569-2c626894f465	7288592d-5128-4dd3-ac08-8ddb872838c5	NM_001289.4	-1	reviewed	p.E142*	0.998	162	0%	161	48.4%	0	-	-	-	-	superfamily_Glutathione S-transferase (GST) C-terminal domain
