Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Algorithm
LRP6	4040	hgsc.bcm.edu	37	12	12301919	12301919	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	LRP6-661	NM_002336	exon14	c.G3163A	p.E1055K	CCTGCTCGCCTTT	.	205.0	12.0	150.0	0.0	.	Atlas-SNP
KRT2	3849	hgsc.bcm.edu	37	12	53045640	53045641	+	In_Frame_Ins	INS	-	-	AGCCGCTGCCGCCTCCAA	novel		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	KRT2-92	NM_000423	exon1	c.287_288insTTGGAGGCGGCAGCGGCT	p.F96delinsFGGGSGF	.	.	162.0	51.0	76.0	0.0	.	Atlas-Indel
BBS10	79738	hgsc.bcm.edu	37	12	76741456	76741459	+	Frame_Shift_Del	DEL	TCTG	TCTG	-	novel		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	TCTG	TCTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	BBS10-92	NM_024685	exon2	c.307_310del	p.103_104del	.	.	107.0	48.0	57.0	0.0	.	Atlas-Indel
SUGT1	10910	hgsc.bcm.edu	37	13	53237236	53237236	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	SUGT1-226	NM_001130912	exon8	c.G484T	p.E162X	GGCTCAGAATCTG	.	45.0	13.0	54.0	0.0	.	Atlas-SNP
HECTD1	25831	hgsc.bcm.edu	37	14	31598273	31598273	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	HECTD1-570	NM_015382	exon25	c.T4304A	p.V1435D	TGAGGGACGTTTT	.	217.0	167.0	261.0	1.0	.	Atlas-SNP
TLN2	83660	hgsc.bcm.edu	37	15	63017231	63017231	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	TLN2-573	NM_015059	exon24	c.G3183A	p.T1061T	GCAGACGCTTAAG	.	43.0	7.0	45.0	0.0	.	Atlas-SNP
TP53	7157	hgsc.bcm.edu	37	17	7578415	7578428	+	Frame_Shift_Del	DEL	ACCTCCGTCATGTG	ACCTCCGTCATGTG	-	novel		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	ACCTCCGTCATGTG	ACCTCCGTCATGTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	TP53,NS,carcinoma,-2	TP53-70225	NM_001126117	exon1	c.107_120del	p.36_40del	.	.	47.0	26.0	110.0	0.0	.	Atlas-Indel
ZNF230	7773	hgsc.bcm.edu	37	19	44515611	44515611	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	ZNF230-90	NM_006300	exon5	c.A1420T	p.M474L	AATGATATGTAAG	.	18.0	6.0	15.0	0.0	.	Atlas-SNP
IZUMO1	284359	hgsc.bcm.edu	37	19	49245556	49245556	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	IZUMO1-91	NM_182575	exon7	c.G510A	p.V170V	AACTTCCACATTC	.	94.0	75.0	99.0	0.0	.	Atlas-SNP
PTCHD2	57540	hgsc.bcm.edu	37	1	11561189	11561189	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	PTCHD2-209	NM_020780	exon2	c.G140A	p.R47Q	GCTGGCGGCACTG	.	64.0	57.0	51.0	0.0	.	Atlas-SNP
MRPL37	51253	hgsc.bcm.edu	37	1	54678298	54678298	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	MRPL37-90	NM_016491	exon5	c.C957T	p.G319G	TTTTGGCAGTGCC	.	91.0	78.0	95.0	0.0	.	Atlas-SNP
IGSF3	3321	hgsc.bcm.edu	37	1	117150771	117150771	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	IGSF3-92	NM_001542	exon5	c.G1015A	p.E339K	CAAATTCGCTGTT	.	162.0	120.0	186.0	0.0	.	Atlas-SNP
NEK2	4751	hgsc.bcm.edu	37	1	211846871	211846871	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	NEK2-765	NM_002497	exon3	c.C509T	p.T170M	AAACTCGTGTCAT	.	205.0	43.0	154.0	0.0	.	Atlas-SNP
UPK3A	7380	hgsc.bcm.edu	37	22	45691450	45691450	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	UPK3A-90	NM_006953	exon6	c.G714A	p.G238G	CATGGGGAGTTCT	.	55.0	45.0	73.0	0.0	.	Atlas-SNP
AGXT	189	hgsc.bcm.edu	37	2	241812461	241812461	+	Missense_Mutation	SNP	G	G	A	rs34664134	byfrequency	TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	AGXT-90	NM_000030	exon5	c.G590A	p.R197Q	TGGACCGGCAAGG	.	45.0	37.0	72.0	0.0	G|0.993;A|0.007	Atlas-SNP
CDCP1	64866	hgsc.bcm.edu	37	3	45135039	45135039	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	CDCP1-117	NM_022842	exon6	c.C1357T	p.P453S	CCTTGGGCACCAG	.	146.0	69.0	94.0	0.0	.	Atlas-SNP
CNTN3	5067	hgsc.bcm.edu	37	3	74316498	74316498	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	CNTN3-137	NM_020872	exon20	c.G2736T	p.W912C	GGCATTCCAAACA	.	137.0	23.0	94.0	0.0	.	Atlas-SNP
PARP14	54625	hgsc.bcm.edu	37	3	122418659	122418659	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	PARP14-525	NM_017554	exon6	c.G1258A	p.D420N	AAAGATGACAGGA	.	176.0	28.0	88.0	0.0	.	Atlas-SNP
CLDN1	9076	hgsc.bcm.edu	37	3	190030751	190030751	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	CLDN1-91	NM_021101	exon2	c.G298A	p.V100I	TGCCAACGGTGGC	.	235.0	44.0	176.0	0.0	.	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	37	3	41266091	41266092	+	Nonsense_Mutation	INS	-	-	A	novel		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	CTNNB1,NS,carcinoma,-1	CTNNB1-24361	NM_001904	exon3	c.88_89insA	p.Y30_L31delinsX	.	.	259.0	120.0	170.0	0.0	.	Atlas-Indel
PAPD7	11044	hgsc.bcm.edu	37	5	6753081	6753081	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	PAPD7-69	NM_001171805	exon12	c.C1365T	p.H455H	CGTCCACCACATG	.	99.0	81.0	110.0	0.0	.	Atlas-SNP
TRAM2	9697	hgsc.bcm.edu	37	6	52380882	52380882	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	TRAM2-90	NM_012288	exon4	c.C333A	p.H111Q	CTTGCTGTGTTTG	.	80.0	4.0	96.0	0.0	.	Atlas-SNP
HIVEP2	3097	hgsc.bcm.edu	37	6	143095218	143095218	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	HIVEP2-95	NM_006734	exon5	c.A658G	p.I220V	AAGGTATACATGG	.	118.0	82.0	139.0	0.0	.	Atlas-SNP
RELN	5649	hgsc.bcm.edu	37	7	103276868	103276868	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	RELN-574	NM_005045	exon18	c.C2117T	p.T706I	GGGAATGTCTGGG	.	276.0	45.0	218.0	0.0	.	Atlas-SNP
DLGAP2	9228	hgsc.bcm.edu	37	8	1645390	1645390	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	DLGAP2-22	NM_004745	exon11	c.C2634T	p.D878D	TGAGGACGTCAGC	.	107.0	92.0	152.0	0.0	.	Atlas-SNP
FAM9A	171482	hgsc.bcm.edu	37	X	8763159	8763159	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	FAM9A-130	NM_174951	exon7	c.A791T	p.E264V	TCTTCCTCTTCTT	.	48.0	7.0	84.0	0.0	.	Atlas-SNP
TGIF2LX	90316	hgsc.bcm.edu	37	X	89177681	89177681	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	TGIF2LX,upper_leg,malignant_melanoma,+1	TGIF2LX-92	NM_138960	exon2	c.C597A	p.S199S	CACATCCCCGTCT	.	348.0	132.0	354.0	0.0	.	Atlas-SNP
TENM1	10178	hgsc.bcm.edu	37	X	123787622	123787622	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	.	NM_014253	exon7	c.G1180T	p.G394X	CCCGTCCCTTCTG	.	74.0	33.0	111.0	0.0	.	Atlas-SNP
