Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Algorithm
RBM20	282996	hgsc.bcm.edu	37	10	112540915	112540915	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	.	NM_001134363	exon2	c.C548T	p.S183F	GACCCTCCATGAA	.	74.0	61.0	98.0	0.0	.	Atlas-SNP
CALHM3	119395	hgsc.bcm.edu	37	10	105233174	105233175	+	In_Frame_Ins	INS	-	-	GGGGGCTCAGGCACTGCG	rs143800079		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	CALHM3-67	NM_001129742	exon3	c.831_832insCGCAGTGCCTGAGCCCCC	p.P277delinsPAVPEPP	.	.	54.0	19.0	29.0	0.0	-|0.870;GGGGGCTCAGGCACTGCG|0.130	Atlas-Indel
MUC5B	727897	hgsc.bcm.edu	37	11	1253980	1253980	+	Missense_Mutation	SNP	A	A	G	rs202127660		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	.	NM_002458	exon17	c.A2045G	p.D682G	TCAGCGACTGGAG	.	91.0	6.0	19.0	0.0	.	Atlas-SNP
CNTN5	53942	hgsc.bcm.edu	37	11	100095508	100095508	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	CNTN5-366	NM_175566	exon13	c.G1747T	p.D583Y	ACAGCAGACAGTG	.	131.0	119.0	145.0	0.0	.	Atlas-SNP
PPFIA2	8499	hgsc.bcm.edu	37	12	81777846	81777846	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	PPFIA2-231	NM_003625	exon9	c.A940G	p.K314E	CTGTTTTAATGAG	.	282.0	83.0	170.0	0.0	.	Atlas-SNP
ADPRM	56985	hgsc.bcm.edu	37	17	10608472	10608472	+	Missense_Mutation	SNP	G	G	A	rs74947284		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	.	NM_020233	exon2	c.G229A	p.D77N	ATCATCGATGGAT	.	127.0	113.0	166.0	0.0	G|0.999;A|0.001	Atlas-SNP
KRTAP4-5	85289	hgsc.bcm.edu	37	17	39305773	39305773	+	Missense_Mutation	SNP	T	T	G	rs201152898		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	KRTAP4-5-90	NM_033188	exon1	c.A247C	p.T83P	AGGTGGTCTGGCA	.	40.0	38.0	7.0	0.0	.	Atlas-SNP
PRKAR1A	5573	hgsc.bcm.edu	37	17	66526554	66526554	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	PRKAR1A-1141	NM_212471	exon11	c.1109delT	p.I370fs	.	.	119.0	57.0	154.0	0.0	.	Pindel
ARID3A	1820	hgsc.bcm.edu	37	19	932572	932572	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	ARID3A-90	NM_005224	exon3	c.C523G	p.R175G	TTCCCCCGAAAGG	.	105.0	35.0	12.0	0.0	.	Atlas-SNP
DVL1	1855	hgsc.bcm.edu	37	1	1273448	1273448	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	DVL1-658	NM_004421	exon14	c.G1548A	p.Q516Q	CGGGTACTGGTAG	.	31.0	28.0	21.0	0.0	.	Atlas-SNP
PDE4DIP	9659	hgsc.bcm.edu	37	1	145075687	145075687	+	Missense_Mutation	SNP	C	C	G	rs78401481	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	PDE4DIP-663	NM_022359	exon1	c.G176C	p.S59T	GCCCAGCTCCCGG	.	115.0	20.0	16.0	0.0	C|0.989;G|0.011	Atlas-SNP
IFNAR2	3455	hgsc.bcm.edu	37	21	34634996	34634996	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	IFNAR2-90	NM_207584	exon9	c.G971A	p.R324H	ACAAGCGTGCATC	.	27.0	13.0	38.0	0.0	.	Atlas-SNP
PI4KA	5297	hgsc.bcm.edu	37	22	21088807	21088807	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	PI4KA-454	NM_002650	exon1	c.C32T	p.T11M	TCCACCGTCATGT	.	191.0	10.0	269.0	0.0	.	Atlas-SNP
GPR113	165082	hgsc.bcm.edu	37	2	26537397	26537397	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	GPR113-94	NM_001145169	exon6	c.T810C	p.L270L	GTATGGAAGTCGA	.	317.0	276.0	380.0	2.0	.	Atlas-SNP
TLR9	54106	hgsc.bcm.edu	37	3	52255624	52255624	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	TLR9-587	NM_017442	exon2	c.C2708A	p.A903E	CGGAGTGCCCAGC	.	141.0	11.0	72.0	0.0	.	Atlas-SNP
DNAH5	1767	hgsc.bcm.edu	37	5	13870993	13870993	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	DNAH5-182	NM_001369	exon24	c.C3717A	p.F1239L	CTTATTGAATTCT	.	177.0	77.0	117.0	0.0	.	Atlas-SNP
PCDHA12	56137	hgsc.bcm.edu	37	5	140255099	140255099	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	.	NM_031864	exon1	c.G42C	p.L14L	GCGTCTGCTGCTC	.	101.0	37.0	61.0	0.0	.	Atlas-SNP
PKHD1	5314	hgsc.bcm.edu	37	6	51920393	51920393	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	PKHD1-603	NM_170724	exon19	c.T1828A	p.Y610N	GTGTATACTGATC	.	108.0	93.0	121.0	1.0	.	Atlas-SNP
