Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Algorithm
SKIDA1	387640	hgsc.bcm.edu	37	10	21805480	21805480	+	Silent	SNP	T	T	C	rs201836118		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	.	NM_207371	exon4	c.A1272G	p.E424E	CTCCTCTTCCTCC	.	46.0	4.0	64.0	0.0	.	Atlas-SNP
SKIDA1	387640	hgsc.bcm.edu	37	10	21805486	21805486	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	.	NM_207371	exon4	c.G1266A	p.E422E	TTCCTCCTCCTCC	.	46.0	4.0	66.0	0.0	.	Atlas-SNP
RET	5979	hgsc.bcm.edu	37	10	43606665	43606665	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	RET-4507	NM_020975	exon7	c.T1274C	p.V425A	GGAAAGTCTGTGT	.	100.0	28.0	79.0	0.0	.	Atlas-SNP
ZNF503	84858	hgsc.bcm.edu	37	10	77160944	77160944	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	ZNF503-91	NM_032772	exon1	c.G234T	p.K78N	CAGCATCTTCAGC	.	42.0	12.0	53.0	0.0	.	Atlas-SNP
PNLIPRP1	5407	hgsc.bcm.edu	37	10	118354303	118354303	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	PNLIPRP1-154	NM_006229	exon5	c.C392A	p.A131D	CCCAAGCCACCTA	.	123.0	45.0	111.0	0.0	.	Atlas-SNP
OR52N1	79473	hgsc.bcm.edu	37	11	5809714	5809714	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	OR52N1-69	NM_001001913	exon1	c.G333C	p.G111G	CTCCATCCCTGTG	.	79.0	57.0	197.0	0.0	.	Atlas-SNP
EML3	256364	hgsc.bcm.edu	37	11	62376216	62376216	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	EML3-91	NM_153265	exon8	c.G991A	p.D331N	TTCCATCCTTATC	.	359.0	69.0	233.0	0.0	.	Atlas-SNP
CCDC88B	283234	hgsc.bcm.edu	37	11	64111938	64111938	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	CCDC88B-94	NM_032251	exon14	c.G1925C	p.R642T	GGTTGAGACAGGA	.	157.0	50.0	76.0	0.0	.	Atlas-SNP
DPP3	10072	hgsc.bcm.edu	37	11	66272099	66272099	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	DPP3-46	NM_005700	exon17	c.G1895A	p.G632E	CCACAGGGGATGT	.	52.0	21.0	51.0	0.0	.	Atlas-SNP
RBM14	10432	hgsc.bcm.edu	37	11	66384417	66384417	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	RBM14-92	NM_001198836	exon1	c.C226G	p.L76V	AGGCCTCTTAATA	.	122.0	11.0	66.0	0.0	.	Atlas-SNP
OR2AT4	341152	hgsc.bcm.edu	37	11	74800245	74800245	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	OR2AT4-69	NM_001005285	exon1	c.G514C	p.A172P	TATATGCCATCTG	.	103.0	43.0	144.0	0.0	.	Atlas-SNP
MLL	4297	hgsc.bcm.edu	37	11	118344503	118344503	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	MLL-1255	NM_005933	exon3	c.G2629C	p.D877H	GAGAGAGACCGGG	.	49.0	18.0	49.0	0.0	.	Atlas-SNP
HMBS	3145	hgsc.bcm.edu	37	11	118963200	118963200	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	HMBS-90	NM_000190	exon11	c.C738T	p.R246R	GCTTCGCTGCATC	.	75.0	6.0	85.0	0.0	.	Atlas-SNP
FLI1	2313	hgsc.bcm.edu	37	11	128677078	128677078	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	FLI1-1084	NM_001271010	exon8	c.C527A	p.P176H	CAGGTCCTCCCCT	.	76.0	30.0	88.0	0.0	.	Atlas-SNP
IGSF9B	22997	hgsc.bcm.edu	37	11	133790390	133790390	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	IGSF9B-68	NM_014987	exon18	c.C3230A	p.P1077H	CCTCGGGGGAGGC	.	27.0	14.0	7.0	0.0	.	Atlas-SNP
CACNA1C	775	hgsc.bcm.edu	37	12	2614015	2614015	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	CACNA1C-34	NM_001129842	exon8	c.A1121G	p.D374G	TCAATGATGCCGT	.	245.0	47.0	180.0	0.0	.	Atlas-SNP
CLEC4C	170482	hgsc.bcm.edu	37	12	7882323	7882323	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	CLEC4C-93	NM_203503	exon6	c.G418T	p.G140C	GTTCACCTGAGTG	.	127.0	25.0	92.0	0.0	.	Atlas-SNP
A2ML1	144568	hgsc.bcm.edu	37	12	8995922	8995922	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	A2ML1-93	NM_144670	exon12	c.G1441A	p.A481T	GCCGATGCAAGCC	.	151.0	35.0	83.0	0.0	.	Atlas-SNP
KLRC4-KLRK1	0	hgsc.bcm.edu	37	12	10541381	10541381	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	.	NM_001199805	exon7	c.G29C	p.R10P	CTGTGTCGAGACC	.	87.0	7.0	58.0	0.0	.	Atlas-SNP
ANO6	196527	hgsc.bcm.edu	37	12	45833607	45833607	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	ANO6-516	NM_001142679	exon20	c.C2676G	p.L892L	CTCCCTCTATTAT	.	56.0	5.0	29.0	0.0	.	Atlas-SNP
MLL2	8085	hgsc.bcm.edu	37	12	49445206	49445206	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	MLL2-612	NM_003482	exon10	c.C2260G	p.P754A	GCCGGGGGGACAG	.	46.0	12.0	10.0	0.0	.	Atlas-SNP
AQP2	359	hgsc.bcm.edu	37	12	50344855	50344855	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	AQP2-92	NM_000486	exon1	c.T242A	p.V81D	GCCACGTCTCCGT	.	131.0	37.0	40.0	0.0	.	Atlas-SNP
OR6C1	390321	hgsc.bcm.edu	37	12	55714972	55714972	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	OR6C1-69	NM_001005182	exon1	c.G589T	p.G197X	GTGATGGGATTTT	.	130.0	36.0	118.0	0.0	.	Atlas-SNP
OR6C1	390321	hgsc.bcm.edu	37	12	55714973	55714973	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	OR6C1-69	NM_001005182	exon1	c.G590T	p.G197V	TGATGGGATTTTC	.	131.0	38.0	119.0	0.0	.	Atlas-SNP
CNPY2	10330	hgsc.bcm.edu	37	12	56705180	56705180	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	CNPY2-68	NM_014255	exon4	c.G223C	p.E75Q	GGGCCTCTGAGCG	.	89.0	26.0	85.0	0.0	.	Atlas-SNP
LRP1	4035	hgsc.bcm.edu	37	12	57577207	57577207	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	LRP1-596	NM_002332	exon35	c.G5708T	p.G1903V	TCAGGGGAATTCC	.	139.0	26.0	135.0	0.0	.	Atlas-SNP
SLC6A15	55117	hgsc.bcm.edu	37	12	85257275	85257275	+	Silent	SNP	A	A	T	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	SLC6A15-93	NM_182767	exon11	c.T1761A	p.A587A	AACACTAGCTATT	.	328.0	153.0	191.0	0.0	.	Atlas-SNP
GPR133	283383	hgsc.bcm.edu	37	12	131593280	131593280	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	GPR133-191	NM_198827	exon18	c.A1899T	p.Q633H	CTGCCAAGTGATG	.	85.0	68.0	121.0	0.0	.	Atlas-SNP
NAB2	4665	hgsc.bcm.edu	37	12	57486328	57486329	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	NAB2-92	NM_005967	exon3	c.1054_1055del	p.352_352del	.	.	184.0	52.0	166.0	0.0	.	Atlas-Indel
SUPT16H	11198	hgsc.bcm.edu	37	14	21840079	21840079	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	SUPT16H-90	NM_007192	exon3	c.A284G	p.E95G	GCATTCTCATTGC	.	110.0	39.0	122.0	0.0	.	Atlas-SNP
MIPOL1	145282	hgsc.bcm.edu	37	14	37736243	37736243	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	MIPOL1-91	NM_001195297	exon6	c.G120T	p.R40R	GCATCGGAAATCC	.	208.0	68.0	178.0	0.0	.	Atlas-SNP
TRMT5	57570	hgsc.bcm.edu	37	14	61446459	61446459	+	Missense_Mutation	SNP	G	G	C	rs188092813		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	TRMT5-91	NM_020810	exon2	c.C157G	p.Q53E	TTCTTTGACCCAA	.	116.0	7.0	74.0	0.0	G|0.999;C|0.000	Atlas-SNP
YLPM1	56252	hgsc.bcm.edu	37	14	75265522	75265522	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	YLPM1-71	NM_019589	exon5	c.A3522G	p.G1174G	ACCAGGAGATGGT	.	115.0	31.0	97.0	0.0	.	Atlas-SNP
IFT43	112752	hgsc.bcm.edu	37	14	76452154	76452154	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	IFT43-90	NM_001102564	exon1	c.G25C	p.E9Q	TTGGACGAGGAGC	.	109.0	27.0	100.0	0.0	.	Atlas-SNP
ISM2	145501	hgsc.bcm.edu	37	14	77951057	77951057	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	ISM2-91	NM_182509	exon2	c.C347T	p.A116V	GTGTTGGCCAATC	.	196.0	50.0	177.0	0.0	.	Atlas-SNP
SNW1	22938	hgsc.bcm.edu	37	14	78203387	78203387	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	SNW1-187	NM_012245	exon6	c.A565T	p.N189Y	CAGAGTTGAATGC	.	55.0	38.0	46.0	0.0	.	Atlas-SNP
AKAP13	11214	hgsc.bcm.edu	37	15	86286897	86286897	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	AKAP13-258	NM_001270546	exon28	c.C4096A	p.H1366N	CCTTTTCACATAC	.	103.0	40.0	99.0	0.0	.	Atlas-SNP
MAN2A2	4122	hgsc.bcm.edu	37	15	91450636	91450636	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	MAN2A2-136	NM_006122	exon7	c.A1107G	p.Q369Q	CTGCCAATTTGAT	.	61.0	28.0	73.0	0.0	.	Atlas-SNP
MMP25	64386	hgsc.bcm.edu	37	16	3108863	3108863	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	MMP25-226	NM_022468	exon10	c.C1453A	p.R485S	TACTGGCGCTTCC	.	69.0	4.0	86.0	0.0	.	Atlas-SNP
TMC7	79905	hgsc.bcm.edu	37	16	19056276	19056276	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	TMC7-93	NM_001160364	exon10	c.G1078C	p.D360H	TCCTGTGATGATG	.	67.0	27.0	126.0	0.0	.	Atlas-SNP
MC1R	4157	hgsc.bcm.edu	37	16	89985902	89985902	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	.	NM_002386	exon1	c.G236A	p.C79Y	TCTGCTGCCTGGC	.	123.0	57.0	113.0	0.0	.	Atlas-SNP
FXR2	9513	hgsc.bcm.edu	37	17	7499311	7499311	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	.	NM_004860	exon8	c.C662A	p.T221K	TTGCTTGTCTGAA	.	99.0	40.0	103.0	0.0	.	Atlas-SNP
CDC27	996	hgsc.bcm.edu	37	17	45234300	45234300	+	Missense_Mutation	SNP	G	G	T	rs199588670		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	CDC27-291	NM_001114091	exon7	c.C821A	p.A274D	CTAAGAGCTGCTG	.	38.0	6.0	32.0	0.0	.	Atlas-SNP
MYADML2	255275	hgsc.bcm.edu	37	17	79899111	79899111	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	MYADML2-68	NM_001145113	exon3	c.C507T	p.I169I	CTGGACGATCTTG	.	107.0	37.0	62.0	0.0	.	Atlas-SNP
SPHK1	8877	hgsc.bcm.edu	37	17	74383432	74383434	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	AGA	AGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	SPHK1-1107	NM_001142601	exon6	c.919_921del	p.307_307del	.	.	165.0	44.0	232.0	0.0	.	Pindel
EPG5	57724	hgsc.bcm.edu	37	18	43508849	43508849	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	EPG5-580	NM_020964	exon13	c.G2539A	p.D847N	CCTGGTCAATGGT	.	43.0	4.0	49.0	0.0	.	Atlas-SNP
RAX	30062	hgsc.bcm.edu	37	18	56939705	56939706	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	RAX-90	NM_013435	exon2	c.431_432insA	p.T144fs	.	.	151.0	55.0	152.0	0.0	.	Atlas-Indel
MYO1F	4542	hgsc.bcm.edu	37	19	8604874	8604874	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	MYO1F-93	NM_012335	exon16	c.G1649A	p.G550E	TTGTCTCCATCCA	.	69.0	12.0	52.0	0.0	.	Atlas-SNP
SPHK2	56848	hgsc.bcm.edu	37	19	49131974	49131974	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	SPHK2-658	NM_001204158	exon7	c.C732G	p.N244K	GCTCAACTGCTCA	.	161.0	39.0	102.0	0.0	.	Atlas-SNP
KCNA7	3743	hgsc.bcm.edu	37	19	49573389	49573389	+	Silent	SNP	G	G	A	rs145070146		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	KCNA7-90	NM_031886	exon2	c.C1302T	p.D434D	CTCCCCGTCCACC	.	192.0	39.0	145.0	0.0	G|1.000;A|0.000	Atlas-SNP
KLK7	5650	hgsc.bcm.edu	37	19	51485656	51485656	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	KLK7-650	NM_001243126	exon2	c.C127A	p.H43N	TGCCATGGTGCCC	.	65.0	4.0	63.0	0.0	.	Atlas-SNP
LILRA1	11024	hgsc.bcm.edu	37	19	55105904	55105904	+	Splice_Site	SNP	A	A	G	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	LILRA1-93	NM_006863	exon3	c.35-2A>G	.	TCTTCCAGGGCTG	.	188.0	27.0	111.0	0.0	.	Atlas-SNP
LILRB1	10859	hgsc.bcm.edu	37	19	55144484	55144484	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	LILRB1-137	NM_001081639	exon7	c.G976T	p.V326F	GACAGAGTCTCCC	.	184.0	41.0	102.0	0.0	.	Atlas-SNP
PRDM2	7799	hgsc.bcm.edu	37	1	14105142	14105142	+	Missense_Mutation	SNP	T	T	A	rs151133690	byfrequency	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	PRDM2-116	NM_001007257	exon3	c.T249A	p.D83E	AGATGATGATGAT	.	67.0	13.0	52.0	0.0	T|0.997;A|0.003	Atlas-SNP
SLC44A5	204962	hgsc.bcm.edu	37	1	75684227	75684227	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	SLC44A5-95	NM_152697	exon17	c.C1477T	p.P493S	CATCAGGTTTTTT	.	171.0	50.0	177.0	0.0	.	Atlas-SNP
DPYD	1806	hgsc.bcm.edu	37	1	97564178	97564178	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	DPYD-278	NM_000110	exon21	c.G2633A	p.S878N	CCAAAACTTGGCA	.	64.0	31.0	60.0	0.0	.	Atlas-SNP
KCND3	3752	hgsc.bcm.edu	37	1	112329612	112329612	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	KCND3-155	NM_004980	exon3	c.G1223A	p.R408Q	TAAATCCGGCTAA	.	203.0	44.0	157.0	0.0	.	Atlas-SNP
SPTA1	6708	hgsc.bcm.edu	37	1	158641930	158641930	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	SPTA1-142	NM_003126	exon11	c.T1407C	p.H469H	CTGACGATGACGC	.	78.0	25.0	92.0	0.0	.	Atlas-SNP
C1orf226	400793	hgsc.bcm.edu	37	1	162353216	162353216	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	C1orf226-1	NM_001085375	exon2	c.A562G	p.K188E	AGAGGCAAAGTTC	.	245.0	99.0	293.0	0.0	.	Atlas-SNP
GPR161	23432	hgsc.bcm.edu	37	1	168059902	168059902	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	GPR161-90	NM_001267614	exon3	c.G762C	p.L254L	CAGGCCCAGGTCT	.	69.0	28.0	79.0	0.0	.	Atlas-SNP
CDC73	79577	hgsc.bcm.edu	37	1	193111054	193111054	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	CDC73-1009	NM_024529	exon7	c.C587A	p.T196N	GATCTACTATCAA	.	213.0	80.0	337.0	0.0	.	Atlas-SNP
USH2A	7399	hgsc.bcm.edu	37	1	216062269	216062269	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	USH2A-115	NM_206933	exon41	c.A7722G	p.L2574L	CAAGTATAGACGG	.	62.0	26.0	66.0	0.0	.	Atlas-SNP
SLA2	84174	hgsc.bcm.edu	37	20	35242711	35242711	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	SLA2-90	NM_032214	exon7	c.A662G	p.D221G	TACCTGTCCAGCT	.	190.0	33.0	114.0	0.0	.	Atlas-SNP
CTSA	5476	hgsc.bcm.edu	37	20	44520258	44520258	+	Frame_Shift_Del	DEL	G	G	-	rs3080212	alternate_allele	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	CTSA-91	NM_000308	exon2	c.104delT	p.L35fs	.	.	70.0	19.0	8.0	0.0	-|0.668;CTG|0.332	Atlas-Indel
CTSA	5476	hgsc.bcm.edu	37	20	44520260	44520261	+	Frame_Shift_Del	DEL	TG	TG	-	rs3080212	alternate_allele	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	CTSA-91	NM_000308	exon2	c.106_107del	p.36_36del	.	.	71.0	18.0	9.0	0.0	-|0.668;CTG|0.332	Atlas-Indel
ETS2	2114	hgsc.bcm.edu	37	21	40188949	40188949	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	ETS2-849	NM_001256295	exon7	c.G943T	p.E315X	AAGACAGAAGATC	.	66.0	24.0	104.0	0.0	.	Atlas-SNP
MCHR1	2847	hgsc.bcm.edu	37	22	41075522	41075522	+	Missense_Mutation	SNP	A	A	G	rs147389509	byfrequency	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	MCHR1-90	NM_005297	exon1	c.A73G	p.T25A	CAGGCTACGGAGG	.	145.0	40.0	111.0	0.0	A|1.000;G|0.000	Atlas-SNP
BRD1	23774	hgsc.bcm.edu	37	22	50198009	50198009	+	Splice_Site	SNP	C	C	A	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	BRD1-91	NM_014577	exon3	c.1368-1G>T	.	TTTAACCTAAAAC	.	150.0	55.0	189.0	0.0	.	Atlas-SNP
CHKB	1120	hgsc.bcm.edu	37	22	51019907	51019907	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	CHKB-90	NM_005198	exon4	c.C523A	p.H175N	TGCCATGAAATTG	.	79.0	42.0	105.0	0.0	.	Atlas-SNP
ATAD2B	54454	hgsc.bcm.edu	37	2	24086377	24086377	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	ATAD2B-68	NM_001242338	exon12	c.C1353G	p.A451A	TGCTCTGGCAACC	.	99.0	49.0	113.0	0.0	.	Atlas-SNP
ALK	238	hgsc.bcm.edu	37	2	29445209	29445209	+	Splice_Site	SNP	C	C	T	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	ALK-3833	NM_004304	exon23	c.3515+1G>A	.	GCTTTACCTGATG	.	48.0	15.0	69.0	0.0	.	Atlas-SNP
IL18R1	8809	hgsc.bcm.edu	37	2	103006523	103006523	+	Missense_Mutation	SNP	G	G	T	rs149204147	alternate_allele	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	IL18R1-93	NM_003855	exon8	c.G957T	p.M319I	AGACATGGCTGAT	.	113.0	34.0	116.0	0.0	G|1.000;A|0.000	Atlas-SNP
CLASP1	23332	hgsc.bcm.edu	37	2	122205879	122205879	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	CLASP1-91	NM_001207051	exon18	c.A1714T	p.S572C	TAGGACTTCTTTT	.	43.0	17.0	59.0	0.0	.	Atlas-SNP
MYO7B	4648	hgsc.bcm.edu	37	2	128347750	128347750	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	MYO7B-47	NM_001080527	exon16	c.C1938A	p.N646K	GACCAACTGCCAG	.	168.0	38.0	141.0	0.0	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	37	2	179621430	179621430	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	TTN-636	NM_001267550	exon46	c.C10773A	p.S3591R	TATTTTGCTCTCC	.	96.0	7.0	63.0	0.0	.	Atlas-SNP
PIKFYVE	200576	hgsc.bcm.edu	37	2	209216103	209216103	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	PIKFYVE-583	NM_015040	exon38	c.C5639G	p.P1880R	AAATGCCTCGTCT	.	49.0	18.0	79.0	0.0	.	Atlas-SNP
TMEM169	92691	hgsc.bcm.edu	37	2	216960742	216960742	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	TMEM169-69	NM_001142311	exon2	c.G56A	p.G19D	ACCAGGGCTCTCT	.	72.0	32.0	63.0	0.0	.	Atlas-SNP
SCN11A	11280	hgsc.bcm.edu	37	3	38966970	38966970	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	SCN11A-99	NM_014139	exon5	c.C648G	p.I216M	TAGTTTGATGGTG	.	177.0	85.0	240.0	0.0	.	Atlas-SNP
CHMP2B	25978	hgsc.bcm.edu	37	3	87294944	87294944	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	CHMP2B-229	NM_001244644	exon2	c.G84A	p.R28R	TCTACGGAAACAG	.	303.0	109.0	263.0	0.0	.	Atlas-SNP
SMC4	10051	hgsc.bcm.edu	37	3	160148934	160148934	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	SMC4-291	NM_001002800	exon20	c.G3055C	p.E1019Q	AAACTTGAACAAA	.	227.0	54.0	192.0	0.0	.	Atlas-SNP
FXR1	8087	hgsc.bcm.edu	37	3	180687983	180687983	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	FXR1-153	NM_001013438	exon15	c.T1440A	p.L480L	CTTACTTGATAAT	.	232.0	26.0	224.0	0.0	.	Atlas-SNP
DGKG	1608	hgsc.bcm.edu	37	3	185985480	185985480	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	DGKG-714	NM_001080744	exon13	c.C1203A	p.I401I	CCGGGTGATGGGG	.	63.0	4.0	61.0	0.0	.	Atlas-SNP
ATP13A5	344905	hgsc.bcm.edu	37	3	193032830	193032830	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	ATP13A5-144	NM_198505	exon18	c.T2089C	p.L697L	TTTTCAAGCGATT	.	68.0	23.0	41.0	0.0	.	Atlas-SNP
SH3D19	152503	hgsc.bcm.edu	37	4	152043252	152043252	+	Missense_Mutation	SNP	C	C	G	rs199694166	alternate_allele	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	SH3D19-92	NM_001009555	exon21	c.G2364C	p.Q788H	GCTGATCTGTAGA	.	49.0	19.0	77.0	0.0	C|0.999;A|0.001	Atlas-SNP
PIGG	54872	hgsc.bcm.edu	37	4	517287	517289	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	CTT	CTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	PIGG-92	NM_017733	exon9	c.1629_1631del	p.543_544del	.	.	248.0	64.0	212.0	0.0	.	Atlas-Indel
RAD1	5810	hgsc.bcm.edu	37	5	34913589	34913589	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	RAD1-227	NM_002853	exon3	c.C293G	p.S98X	GGACTTGATCCAA	.	232.0	52.0	195.0	0.0	.	Atlas-SNP
EGFLAM	133584	hgsc.bcm.edu	37	5	38427121	38427121	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	EGFLAM-187	NM_001205301	exon14	c.G1821C	p.L607F	CACCTTGACCATT	.	61.0	27.0	46.0	0.0	.	Atlas-SNP
MAP1B	4131	hgsc.bcm.edu	37	5	71495181	71495181	+	Missense_Mutation	SNP	C	C	A	rs113459978	alternate_allele	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	MAP1B-155	NM_005909	exon5	c.C5999A	p.T2000K	GCCACACACTTGG	.	61.0	21.0	77.0	0.0	C|0.500;T|0.500	Atlas-SNP
HOMER1	9456	hgsc.bcm.edu	37	5	78671991	78671991	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	HOMER1-90	NM_004272	exon9	c.C906C	p.L302L	TTGTCCCTCCAGG	.	88.0	20.0	93.0	0.0	.	Atlas-SNP
HSD17B4	3295	hgsc.bcm.edu	37	5	118844896	118844896	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	HSD17B4-92	NM_000414	exon16	c.G1394A	p.G465D	TTGTTGGCTCTGG	.	50.0	4.0	40.0	0.0	.	Atlas-SNP
PCDHB11	56125	hgsc.bcm.edu	37	5	140579540	140579540	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	PCDHB11-96	NM_018931	exon1	c.C193T	p.R65W	GGGGCTCGGGTGG	.	62.0	17.0	33.0	0.0	.	Atlas-SNP
CARD6	84674	hgsc.bcm.edu	37	5	40843294	40843294	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	CARD6-230	NM_032587	exon2	c.323delT	p.M108fs	.	.	54.0	13.0	28.0	0.0	.	Atlas-Indel
MAP1B	4131	hgsc.bcm.edu	37	5	71492991	71492991	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	MAP1B-155	NM_005909	exon5	c.3808delA	p.T1270fs	.	.	105.0	25.0	100.0	0.0	.	Pindel
NEDD9	4739	hgsc.bcm.edu	37	6	11185653	11185653	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	NEDD9-226	NM_006403	exon7	c.C2247A	p.V749V	GAGGATGACAAAC	.	201.0	71.0	227.0	0.0	.	Atlas-SNP
FKBPL	63943	hgsc.bcm.edu	37	6	32096557	32096557	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	FKBPL-204	NM_022110	exon2	c.A1001T	p.K334M	TGGTTCTTCCCCT	.	213.0	40.0	130.0	0.0	.	Atlas-SNP
LRFN2	57497	hgsc.bcm.edu	37	6	40399886	40399886	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	LRFN2-93	NM_020737	exon2	c.G967C	p.V323L	GGGCTACCCAGTG	.	75.0	6.0	43.0	0.0	.	Atlas-SNP
PGK2	5232	hgsc.bcm.edu	37	6	49754247	49754247	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	PGK2-91	NM_138733	exon1	c.A654G	p.A218A	CTTGTCTGCCACT	.	356.0	71.0	241.0	0.0	.	Atlas-SNP
FILIP1	27145	hgsc.bcm.edu	37	6	76022190	76022190	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	FILIP1-94	NM_015687	exon5	c.C3358G	p.P1120A	CACCAGGCCGTGA	.	435.0	83.0	302.0	0.0	.	Atlas-SNP
BACH2	60468	hgsc.bcm.edu	37	6	90660029	90660029	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	BACH2-231	NM_021813	exon7	c.C1796T	p.A599V	CTGTCTGCTTCCG	.	241.0	41.0	98.0	0.0	.	Atlas-SNP
BACH2	60468	hgsc.bcm.edu	37	6	90660030	90660030	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	BACH2-231	NM_021813	exon7	c.G1795A	p.A599T	TGTCTGCTTCCGA	.	242.0	41.0	98.0	0.0	.	Atlas-SNP
HACE1	57531	hgsc.bcm.edu	37	6	105219214	105219214	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	HACE1-663	NM_020771	exon19	c.A2065C	p.K689Q	AATTTTTCGCATA	.	89.0	36.0	69.0	0.0	.	Atlas-SNP
AHI1	54806	hgsc.bcm.edu	37	6	135726087	135726087	+	Splice_Site	SNP	A	A	C	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	AHI1-227	NM_001134830	exon21	c.2988+2T>G	.	CTACTTACTTTTG	.	49.0	14.0	54.0	0.0	.	Atlas-SNP
DST	667	hgsc.bcm.edu	37	6	56434803	56434805	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	CTT	CTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	DST-523	NM_015548	exon35	c.5859_5861del	p.1953_1954del	.	.	36.0	11.0	39.0	0.0	.	Atlas-Indel
OGDH	4967	hgsc.bcm.edu	37	7	44714133	44714133	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	OGDH-228	NM_001003941	exon7	c.C912T	p.Y304Y	GGACTACGTGATC	.	172.0	63.0	279.0	0.0	.	Atlas-SNP
LRRD1	401387	hgsc.bcm.edu	37	7	91793258	91793258	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	.	NM_001161528	exon1	c.T1259G	p.L420X	TTTCTTAAATTGT	.	61.0	31.0	49.0	0.0	.	Atlas-SNP
PARP12	64761	hgsc.bcm.edu	37	7	139737565	139737565	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	PARP12-525	NM_022750	exon7	c.C1274T	p.A425V	AAGGTGGCTGCCT	.	68.0	49.0	186.0	0.0	.	Atlas-SNP
NOS3	4846	hgsc.bcm.edu	37	7	150698393	150698393	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	NOS3-1011	NM_000603	exon11	c.G1308T	p.K436N	GCAGAAGGCCAGG	.	19.0	12.0	45.0	0.0	.	Atlas-SNP
SLC20A2	6575	hgsc.bcm.edu	37	8	42294695	42294695	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	SLC20A2-92	NM_006749	exon8	c.C1335G	p.I445M	CGCCTCGATCTCC	.	104.0	17.0	37.0	0.0	.	Atlas-SNP
ZNF704	619279	hgsc.bcm.edu	37	8	81553604	81553604	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	ZNF704-90	NM_001033723	exon9	c.C1236T	p.D412D	CTCTCAGTCGAGG	.	118.0	27.0	43.0	0.0	.	Atlas-SNP
CHMP4C	92421	hgsc.bcm.edu	37	8	82670423	82670423	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	CHMP4C-92	NM_152284	exon4	c.A530G	p.N177S	AATTAAATAAGAA	.	177.0	39.0	114.0	0.0	.	Atlas-SNP
MPDZ	8777	hgsc.bcm.edu	37	9	13192144	13192144	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	MPDZ-231	NM_001261406	exon15	c.G1954T	p.E652X	TTAGCTCAATATC	.	110.0	21.0	72.0	0.0	.	Atlas-SNP
IFNA8	3445	hgsc.bcm.edu	37	9	21409580	21409580	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	IFNA8-90	NM_002170	exon1	c.G405A	p.M135I	CCTGATGTACGAG	.	215.0	47.0	110.0	0.0	.	Atlas-SNP
PIGO	84720	hgsc.bcm.edu	37	9	35092629	35092629	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	PIGO-290	NM_001201484	exon8	c.G1255A	p.A419T	GTGTCGCCTCAGC	.	81.0	21.0	88.0	0.0	.	Atlas-SNP
PCSK5	5125	hgsc.bcm.edu	37	9	78910311	78910311	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	PCSK5-93	NM_001190482	exon26	c.G3306A	p.E1102E	TGAAGAGGGCTTC	.	266.0	82.0	267.0	0.0	.	Atlas-SNP
PRDM12	59335	hgsc.bcm.edu	37	9	133556750	133556750	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	PRDM12-90	NM_021619	exon5	c.G798A	p.T266T	CCACACGCTGGAC	.	122.0	27.0	27.0	0.0	.	Atlas-SNP
PAEP	5047	hgsc.bcm.edu	37	9	138453660	138453660	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	PAEP-68	NM_001018049	exon1	c.C13T	p.L5L	TGCCTCCTGCTCA	.	205.0	45.0	114.0	0.0	.	Atlas-SNP
OR1K1	392392	hgsc.bcm.edu	37	9	125562456	125562458	+	In_Frame_Del	DEL	ACA	ACA	-	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	ACA	ACA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	OR1K1-69	NM_080859	exon1	c.54_56del	p.18_19del	.	.	194.0	42.0	124.0	0.0	.	Atlas-Indel
MAP3K15	389840	hgsc.bcm.edu	37	X	19425347	19425347	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	MAP3K15-335	NM_001001671	exon13	c.T1803A	p.D601E	AAAGTCATCAGAA	.	251.0	21.0	164.0	0.0	.	Atlas-SNP
FAM47C	442444	hgsc.bcm.edu	37	X	37026574	37026574	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	FAM47C-111	NM_001013736	exon1	c.G91A	p.A31T	TACTTCGCGAAGC	.	423.0	28.0	368.0	0.0	.	Atlas-SNP
FAM47C	442444	hgsc.bcm.edu	37	X	37028029	37028029	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	FAM47C-111	NM_001013736	exon1	c.G1546C	p.E516Q	CCTTCTGAGACTG	.	80.0	29.0	83.0	0.0	.	Atlas-SNP
GPR82	27197	hgsc.bcm.edu	37	X	41586498	41586498	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	GPR82-110	NM_080817	exon3	c.C219G	p.I73M	GAGTATCTATTTC	.	130.0	41.0	120.0	0.0	.	Atlas-SNP
IQSEC2	23096	hgsc.bcm.edu	37	X	53284064	53284064	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	IQSEC2-178	NM_001111125	exon4	c.C1049G	p.A350G	CTGGCAGCCCTGC	.	182.0	45.0	144.0	0.0	.	Atlas-SNP
COL4A6	1288	hgsc.bcm.edu	37	X	107447550	107447550	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	COL4A6-199	NM_033641	exon12	c.G780T	p.K260N	CACTACCTTGGAT	.	35.0	16.0	49.0	0.0	.	Atlas-SNP
OCRL	4952	hgsc.bcm.edu	37	X	128722897	128722897	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	OCRL-206	NM_001587	exon21	c.C2352A	p.L784L	ACTGCTCATTTTC	.	62.0	8.0	73.0	0.0	.	Atlas-SNP
