Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Algorithm
AKR1C3	8644	hgsc.bcm.edu	37	10	5139659	5139659	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	AKR1C3-515	NM_001253909	exon3	c.C286T	p.R96X	TTGGTCCGACCAG	.	149.0	9.0	131.0	0.0	.	Atlas-SNP
ITIH2	3698	hgsc.bcm.edu	37	10	7768994	7768994	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ITIH2-93	NM_002216	exon10	c.C1066T	p.R356X	AACATTCGAACTT	.	88.0	53.0	108.0	0.0	.	Atlas-SNP
CUBN	8029	hgsc.bcm.edu	37	10	16994285	16994285	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CUBN-166	NM_001081	exon33	c.G4959A	p.A1653A	AGGTTGCGCTTGA	.	189.0	62.0	188.0	0.0	.	Atlas-SNP
BMS1	9790	hgsc.bcm.edu	37	10	43285924	43285924	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	BMS1-93	NM_014753	exon5	c.C601T	p.R201X	AAGAAGCGATTAA	.	76.0	7.0	64.0	0.0	.	Atlas-SNP
RET	5979	hgsc.bcm.edu	37	10	43622076	43622076	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	RET-4507	NM_020975	exon19	c.C3093T	p.D1031D	TGACGACGGCCTC	.	90.0	26.0	65.0	0.0	.	Atlas-SNP
PPYR1	5540	hgsc.bcm.edu	37	10	47087520	47087520	+	Missense_Mutation	SNP	G	G	A	rs115443559	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PPYR1-524	NM_005972	exon3	c.G737A	p.R246H	AGGGGCGCGTGTT	.	153.0	26.0	111.0	0.0	G|0.999;A|0.001	Atlas-SNP
C10orf71	118461	hgsc.bcm.edu	37	10	50533416	50533416	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	C10orf71-90	NM_001135196	exon3	c.G2826A	p.S942S	GGGGTCGAGCATG	.	127.0	83.0	86.0	0.0	.	Atlas-SNP
PCDH15	65217	hgsc.bcm.edu	37	10	55587306	55587306	+	Missense_Mutation	SNP	C	C	T	rs143538460		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PCDH15-193	NM_001142767	exon30	c.G4094A	p.R1365H	GCTTGACGTCTTG	.	105.0	29.0	101.0	0.0	C|1.000;T|0.000	Atlas-SNP
FAM13C	220965	hgsc.bcm.edu	37	10	61012730	61012730	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	FAM13C-70	NM_001143773	exon13	c.G1112A	p.R371H	TGTGGACGGTCTT	.	262.0	72.0	238.0	0.0	.	Atlas-SNP
ZSWIM8	23053	hgsc.bcm.edu	37	10	75552240	75552240	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_001242487	exon10	c.C1943A	p.P648H	CCTGTCCTCTCCA	.	131.0	47.0	84.0	0.0	.	Atlas-SNP
PAPSS2	9060	hgsc.bcm.edu	37	10	89469057	89469057	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PAPSS2-493	NM_001015880	exon2	c.C132T	p.T44T	ATGTACCGTGTGG	.	33.0	12.0	44.0	0.0	.	Atlas-SNP
RRP12	23223	hgsc.bcm.edu	37	10	99145706	99145706	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	RRP12-92	NM_015179	exon9	c.C1062T	p.H354H	CCTGGCGTGGAAG	.	257.0	157.0	173.0	0.0	.	Atlas-SNP
PDZD7	79955	hgsc.bcm.edu	37	10	102789754	102789754	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PDZD7-136	NM_001195263	exon2	c.G223A	p.E75K	TACCTTCGATGGG	.	30.0	6.0	23.0	0.0	.	Atlas-SNP
SUFU	51684	hgsc.bcm.edu	37	10	104359294	104359294	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SUFU-2246	NM_016169	exon8	c.C1015T	p.R339W	CACGACCGGGCCC	.	114.0	35.0	88.0	0.0	.	Atlas-SNP
PDCD11	22984	hgsc.bcm.edu	37	10	105182858	105182858	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PDCD11-275	NM_014976	exon18	c.G2611A	p.D871N	GTGCCCGACCTGG	.	294.0	188.0	215.0	0.0	.	Atlas-SNP
CALHM1	255022	hgsc.bcm.edu	37	10	105215444	105215444	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CALHM1-91	NM_001001412	exon2	c.C616T	p.R206W	AGGGCCGCACAGA	.	161.0	19.0	76.0	0.0	.	Atlas-SNP
INPP5F	22876	hgsc.bcm.edu	37	10	121586489	121586489	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	INPP5F-229	NM_014937	exon20	c.A2596G	p.N866D	CTTACAAATTCTA	.	183.0	110.0	143.0	0.0	.	Atlas-SNP
PTPN20A	653129	hgsc.bcm.edu	37	10	46584455	46584455	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PTPN20A-22	NM_001042393	exon6	c.534delC	p.N178fs	.	.	79.0	33.0	59.0	0.0	.	Atlas-Indel
ANKRD26	22852	hgsc.bcm.edu	37	10	27333122	27333123	+	Splice_Site	DEL	AA	AA	-	rs113123391	alternate_allele	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	AA	AA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ANKRD26-138	.	.	.	.	.	.	39.0	18.0	30.0	0.0	-|1.000;|0.000	Pindel
RASSF7	8045	hgsc.bcm.edu	37	11	562158	562158	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	RASSF7-91	NM_001143993	exon3	c.C204T	p.G68G	AGTGGGCGCCCAG	.	173.0	11.0	77.0	0.0	.	Atlas-SNP
PHRF1	57661	hgsc.bcm.edu	37	11	598468	598468	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PHRF1-22	NM_020901	exon9	c.G990A	p.T330T	CCTGACGCCGCGC	.	56.0	47.0	8.0	0.0	.	Atlas-SNP
MUC5B	727897	hgsc.bcm.edu	37	11	1276467	1276467	+	Silent	SNP	A	A	G	rs56344012		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_002458	exon36	c.A15861G	p.P5287P	CCCACCACAGCCG	.	24.0	18.0	6.0	0.0	A|0.981;G|0.019	Atlas-SNP
OR51F2	119694	hgsc.bcm.edu	37	11	4843086	4843086	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	OR51F2-70	NM_001004753	exon1	c.G471T	p.K157N	TGCCAAGATTGGG	.	148.0	77.0	198.0	1.0	.	Atlas-SNP
MICAL2	9645	hgsc.bcm.edu	37	11	12234878	12234878	+	Silent	SNP	G	G	A	rs138615174		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MICAL2-92	NM_014632	exon7	c.G768A	p.A256A	CACAGCGGAAGCC	.	101.0	99.0	107.0	0.0	G|1.000;A|0.000	Atlas-SNP
INSC	387755	hgsc.bcm.edu	37	11	15262049	15262049	+	Missense_Mutation	SNP	G	G	A	rs201482506		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	INSC-94	NM_001042536	exon12	c.G1450A	p.A484T	AGTGACGCCGTGC	.	112.0	51.0	117.0	0.0	G|0.999;A|0.000	Atlas-SNP
HPS5	11234	hgsc.bcm.edu	37	11	18339355	18339355	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	HPS5-133	NM_181507	exon2	c.G51A	p.E17E	TTCAAACTCTGCA	.	117.0	6.0	166.0	0.0	.	Atlas-SNP
LDHA	3939	hgsc.bcm.edu	37	11	18422479	18422479	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	LDHA-650	NM_001165415	exon4	c.G340A	p.V114M	CGTAACGTGAACA	.	130.0	76.0	191.0	0.0	.	Atlas-SNP
NAV2	89797	hgsc.bcm.edu	37	11	20075678	20075678	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	NAV2-96	NM_001111018	exon18	c.C4342T	p.R1448W	TGGTTACGGTCCC	.	86.0	74.0	96.0	0.0	.	Atlas-SNP
SLC35C1	55343	hgsc.bcm.edu	37	11	45832787	45832787	+	Silent	SNP	C	C	T	rs144046143		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SLC35C1-90	NM_001145265	exon3	c.C957T	p.G319G	GCTGGGCGGCTCC	.	47.0	45.0	41.0	0.0	C|1.000;T|0.000	Atlas-SNP
CRY2	1408	hgsc.bcm.edu	37	11	45892023	45892023	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CRY2-90	NM_001127457	exon9	c.C1306T	p.R436W	ACCAGCCGGCTTA	.	127.0	20.0	169.0	0.0	.	Atlas-SNP
LRP4	4038	hgsc.bcm.edu	37	11	46914637	46914637	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	LRP4-94	NM_002334	exon13	c.C1584T	p.T528T	TGAGTCGGTCCAG	.	66.0	33.0	78.0	0.0	.	Atlas-SNP
ZDHHC5	25921	hgsc.bcm.edu	37	11	57466653	57466653	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ZDHHC5-226	NM_015457	exon11	c.G1745A	p.R582H	CCCCTCGTACTAG	.	57.0	53.0	57.0	0.0	.	Atlas-SNP
NXF1	10482	hgsc.bcm.edu	37	11	62561845	62561845	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	NXF1-228	NM_006362	exon19	c.G1645A	p.A549T	GCATAGCGAAGGC	.	132.0	64.0	189.0	0.0	.	Atlas-SNP
C11orf84	144097	hgsc.bcm.edu	37	11	63594410	63594410	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	C11orf84-90	NM_138471	exon6	c.G945A	p.P315P	CCCTCCGGGGCTC	.	58.0	25.0	30.0	0.0	.	Atlas-SNP
SLC22A12	116085	hgsc.bcm.edu	37	11	64368361	64368361	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SLC22A12-91	NM_001276327	exon7	c.G1225A	p.E409K	CTGCCCGAGACCC	.	35.0	12.0	20.0	0.0	.	Atlas-SNP
POLA2	23649	hgsc.bcm.edu	37	11	65034978	65034978	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	POLA2-227	NM_002689	exon3	c.C235T	p.H79Y	GCCAGGCATAGTA	.	58.0	48.0	100.0	0.0	.	Atlas-SNP
PELI3	246330	hgsc.bcm.edu	37	11	66243098	66243098	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PELI3-91	NM_145065	exon8	c.C870T	p.D290D	GCAGGACGGCTCT	.	238.0	19.0	106.0	0.0	.	Atlas-SNP
NUMA1	4926	hgsc.bcm.edu	37	11	71718457	71718457	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	NUMA1-633	NM_006185	exon21	c.C5241T	p.D1747D	GGTGCCGTCTGGC	.	54.0	52.0	68.0	0.0	.	Atlas-SNP
RPS3	6188	hgsc.bcm.edu	37	11	75115215	75115215	+	Missense_Mutation	SNP	G	G	A	rs11546214	alternate_allele	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	RPS3-90	NM_001260506	exon5	c.G550A	p.V184I	TACTACGTTGACA	.	179.0	159.0	175.0	0.0	.	Atlas-SNP
KCTD21	283219	hgsc.bcm.edu	37	11	77885166	77885166	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	KCTD21-69	NM_001029859	exon2	c.C435T	p.N145N	GTTGGCGTTGAAG	.	81.0	68.0	131.0	0.0	.	Atlas-SNP
HEPHL1	341208	hgsc.bcm.edu	37	11	93826774	93826774	+	Missense_Mutation	SNP	G	G	A	rs200108606		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	HEPHL1-71	NM_001098672	exon13	c.G2402A	p.R801Q	AAGCCCGACCACC	.	175.0	9.0	226.0	0.0	G|0.999;A|0.000	Atlas-SNP
POU2AF1	5450	hgsc.bcm.edu	37	11	111229514	111229514	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	POU2AF1-658	NM_006235	exon2	c.C146T	p.A49V	CTCACCGCCGTAG	.	74.0	35.0	51.0	0.0	.	Atlas-SNP
HTR3A	3359	hgsc.bcm.edu	37	11	113860305	113860305	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	HTR3A-90	NM_000869	exon9	c.G1275T	p.L425L	GCTGCTGCAGGAG	.	49.0	5.0	27.0	0.0	.	Atlas-SNP
NXPE4	54827	hgsc.bcm.edu	37	11	114453402	114453402	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_001077639	exon3	c.G438A	p.A146A	CATCAGCGCTGGG	.	237.0	115.0	297.0	0.0	.	Atlas-SNP
TMPRSS4	56649	hgsc.bcm.edu	37	11	117984057	117984057	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TMPRSS4-90	NM_001173551	exon9	c.G811A	p.V271M	CTGGCTGTGGCCA	.	174.0	10.0	233.0	0.0	.	Atlas-SNP
PHLDB1	23187	hgsc.bcm.edu	37	11	118495742	118495742	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PHLDB1-90	NM_001144758	exon5	c.C448T	p.R150X	GGGGGCCGAGCCC	.	58.0	24.0	82.0	0.0	.	Atlas-SNP
DDX6	1656	hgsc.bcm.edu	37	11	118635947	118635947	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	DDX6-659	NM_001257191	exon6	c.C616T	p.R206X	CATCTCGTAAATT	.	91.0	36.0	126.0	0.0	.	Atlas-SNP
CXCR5	643	hgsc.bcm.edu	37	11	118764716	118764716	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CXCR5-721	NM_032966	exon1	c.G328A	p.V110I	CACGCCGTCCATG	.	125.0	62.0	58.0	0.0	.	Atlas-SNP
POU2F3	25833	hgsc.bcm.edu	37	11	120175859	120175859	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	POU2F3-92	NM_014352	exon7	c.G565A	p.E189K	GACCTCGAGGAGC	.	111.0	6.0	116.0	0.0	.	Atlas-SNP
VWA5A	4013	hgsc.bcm.edu	37	11	123993793	123993793	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	VWA5A-92	NM_014622	exon7	c.T887C	p.M296T	GCCCCATGAGTAG	.	36.0	34.0	39.0	0.0	.	Atlas-SNP
OR8D2	283160	hgsc.bcm.edu	37	11	124189576	124189576	+	Missense_Mutation	SNP	G	G	A	rs151287996		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	OR8D2-113	NM_001002918	exon1	c.C518T	p.T173M	CTGACCGTATGAG	.	74.0	62.0	113.0	0.0	G|1.000;A|0.000	Atlas-SNP
CD3G	917	hgsc.bcm.edu	37	11	118220583	118220583	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CD3G-90	NM_000073	exon3	c.204delT	p.D68fs	.	.	121.0	60.0	172.0	0.0	.	Pindel
WNT5B	81029	hgsc.bcm.edu	37	12	1742040	1742040	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	WNT5B-562	NM_032642	exon3	c.C297T	p.N99N	GGACAACGCATCT	.	154.0	34.0	86.0	0.0	.	Atlas-SNP
CACNA2D4	93589	hgsc.bcm.edu	37	12	1988971	1988971	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CACNA2D4-23	NM_172364	exon14	c.C1562T	p.T521M	CTCACCGTTTCGT	.	151.0	10.0	87.0	0.0	.	Atlas-SNP
CACNA2D4	93589	hgsc.bcm.edu	37	12	2019113	2019113	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CACNA2D4-23	NM_172364	exon4	c.G445A	p.E149K	CCTCCTCGGCAGC	.	118.0	60.0	76.0	0.0	.	Atlas-SNP
CLEC4A	50856	hgsc.bcm.edu	37	12	8290774	8290774	+	Missense_Mutation	SNP	G	G	A	rs200191238		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CLEC4A-90	NM_194450	exon5	c.G506A	p.R169H	ATGAGCGCTGCGT	.	338.0	21.0	266.0	0.0	G|0.999;A|0.000	Atlas-SNP
SLC2A13	114134	hgsc.bcm.edu	37	12	40422282	40422282	+	Missense_Mutation	SNP	G	G	A	rs200980396	alternate_allele	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SLC2A13-515	NM_052885	exon3	c.C746T	p.A249V	ATAACCGCCGGAA	.	42.0	26.0	27.0	0.0	.	Atlas-SNP
VDR	7421	hgsc.bcm.edu	37	12	48249477	48249477	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	VDR-188	NM_001017536	exon7	c.G841A	p.A281T	GGTCAGCCAGGTG	.	454.0	223.0	299.0	0.0	.	Atlas-SNP
OR8S1	341568	hgsc.bcm.edu	37	12	48921823	48921823	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	OR8S1-69	NM_001005203	exon2	c.G1017A	p.T339T	GGTCACGCCTCAA	.	60.0	31.0	20.0	0.0	.	Atlas-SNP
KCNH3	23416	hgsc.bcm.edu	37	12	49943990	49943990	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	KCNH3-90	NM_012284	exon10	c.G1796A	p.R599Q	CCCTGCGGCCCGC	.	68.0	21.0	6.0	0.0	.	Atlas-SNP
GPR84	53831	hgsc.bcm.edu	37	12	54757424	54757424	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	GPR84-523	NM_020370	exon2	c.C212T	p.T71M	AGGAGCGTGCAGT	.	527.0	258.0	307.0	0.0	.	Atlas-SNP
TMTC2	160335	hgsc.bcm.edu	37	12	83290288	83290288	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TMTC2-92	NM_152588	exon3	c.G1346A	p.R449Q	AAAAGCGGTTCCT	.	96.0	42.0	83.0	0.0	.	Atlas-SNP
LRRIQ1	84125	hgsc.bcm.edu	37	12	85554403	85554403	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	LRRIQ1-95	NM_001079910	exon24	c.G4733A	p.R1578H	CTGTGCGTCTAGC	.	108.0	42.0	92.0	0.0	.	Atlas-SNP
SCYL2	55681	hgsc.bcm.edu	37	12	100732792	100732792	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SCYL2-336	NM_017988	exon18	c.G2632T	p.G878C	ACTATGGGCAGTT	.	266.0	22.0	172.0	0.0	.	Atlas-SNP
ACACB	32	hgsc.bcm.edu	37	12	109613959	109613959	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ACACB-98	NM_001093	exon8	c.C1328T	p.A443V	CCCAGGCAGCAGA	.	276.0	44.0	205.0	0.0	.	Atlas-SNP
OAS2	4939	hgsc.bcm.edu	37	12	113442751	113442751	+	Missense_Mutation	SNP	G	G	A	rs143746502		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	OAS2-91	NM_002535	exon7	c.G1192A	p.A398T	TCAACCGCCAAAG	.	130.0	66.0	86.0	0.0	G|0.999;A|0.000	Atlas-SNP
MAP1LC3B2	643246	hgsc.bcm.edu	37	12	117013775	117013775	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MAP1LC3B2-68	NM_001085481	exon2	c.C28T	p.R10W	AAGCAGCGGCGCA	.	247.0	52.0	153.0	0.0	.	Atlas-SNP
C12orf49	79794	hgsc.bcm.edu	37	12	117160928	117160928	+	Missense_Mutation	SNP	G	G	A	rs149801903		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	C12orf49-91	NM_024738	exon2	c.C212T	p.P71L	TTGCTCGGACGAC	.	366.0	85.0	191.0	0.0	G|1.000;A|0.000	Atlas-SNP
RHOF	54509	hgsc.bcm.edu	37	12	122219074	122219074	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	RHOF-660	NM_019034	exon3	c.G251A	p.R84Q	AGGGGCCGCAGCC	.	247.0	52.0	109.0	0.0	.	Atlas-SNP
SNRNP35	11066	hgsc.bcm.edu	37	12	123950559	123950559	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SNRNP35-68	NM_022717	exon2	c.C472T	p.R158W	GGGGGACGGGACC	.	55.0	7.0	35.0	0.0	.	Atlas-SNP
TMEM132D	121256	hgsc.bcm.edu	37	12	130184571	130184571	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TMEM132D-106	NM_133448	exon2	c.G752T	p.R251L	CCTGTCCGGATCC	.	134.0	59.0	88.0	0.0	.	Atlas-SNP
GPR162	27239	hgsc.bcm.edu	37	12	6934685	6934685	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	GPR162-92	NM_019858	exon3	c.903delG	p.A301fs	.	.	103.0	25.0	24.0	0.0	.	Atlas-Indel
MLL2	8085	hgsc.bcm.edu	37	12	49434492	49434492	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MLL2-612	NM_003482	exon31	c.7062delT	p.P2354fs	.	.	107.0	52.0	46.0	0.0	.	Atlas-Indel
TMBIM4	51643	hgsc.bcm.edu	37	12	66531937	66531937	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TMBIM4-515	NM_016056	exon7	c.521delA	p.Y174fs	.	.	26.0	12.0	24.0	0.0	.	Atlas-Indel
HIP1R	9026	hgsc.bcm.edu	37	12	123339931	123339932	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	HIP1R-91	NM_003959	exon11	c.972_973insC	p.G324fs	.	.	171.0	60.0	40.0	0.0	.	Atlas-Indel
SPATA13	221178	hgsc.bcm.edu	37	13	24825999	24825999	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SPATA13-229	NM_001166271	exon4	c.C2163T	p.N721N	ATCCAACGGTGAG	.	63.0	52.0	65.0	0.0	.	Atlas-SNP
TSC22D1	8848	hgsc.bcm.edu	37	13	45147753	45147753	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TSC22D1-90	NM_183422	exon1	c.G2458A	p.A820T	TAACTGCAGGCAA	.	103.0	9.0	131.0	0.0	.	Atlas-SNP
ABCC4	10257	hgsc.bcm.edu	37	13	95840746	95840746	+	Silent	SNP	G	G	A	rs150945397		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ABCC4-515	NM_001105515	exon10	c.C1314T	p.G438G	CAATTCGCCAGGT	.	106.0	94.0	138.0	0.0	G|1.000;A|0.000	Atlas-SNP
TFDP1	7027	hgsc.bcm.edu	37	13	114292172	114292172	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TFDP1-416	NM_007111	exon11	c.C1046T	p.T349M	TCACGACGGCAGG	.	363.0	45.0	144.0	0.0	.	Atlas-SNP
EFS	10278	hgsc.bcm.edu	37	14	23828979	23828979	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	EFS-153	NM_032459	exon3	c.C429T	p.P143P	TTCCTCGGGTGCT	.	83.0	13.0	70.0	0.0	.	Atlas-SNP
AKAP6	9472	hgsc.bcm.edu	37	14	33014537	33014537	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	AKAP6-733	NM_004274	exon4	c.A678G	p.E226E	ATTCGAACTGTCT	.	420.0	188.0	288.0	1.0	.	Atlas-SNP
BAZ1A	11177	hgsc.bcm.edu	37	14	35231352	35231352	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	BAZ1A-291	NM_013448	exon24	c.G3854A	p.R1285H	TGGCCACGACTTG	.	128.0	26.0	89.0	0.0	.	Atlas-SNP
SYNE2	23224	hgsc.bcm.edu	37	14	64644168	64644168	+	Silent	SNP	C	C	T	rs202141038		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SYNE2-164	NM_015180	exon96	c.C17523T	p.H5841H	GCTTCACGAGGAC	.	247.0	116.0	187.0	0.0	C|0.999;T|0.000	Atlas-SNP
ACTN1	87	hgsc.bcm.edu	37	14	69371417	69371417	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ACTN1-514	NM_001130005	exon7	c.G631A	p.V211M	CTGCCACGTCAAA	.	245.0	27.0	144.0	0.0	.	Atlas-SNP
GALNT16	57452	hgsc.bcm.edu	37	14	69792727	69792727	+	Missense_Mutation	SNP	G	G	A	rs138742665	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_020692	exon5	c.G551A	p.R184H	GCCTGCGCAATGA	.	264.0	14.0	149.0	0.0	G|1.000;A|0.000	Atlas-SNP
PCNX	22990	hgsc.bcm.edu	37	14	71575457	71575457	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PCNX-91	NM_014982	exon34	c.G6438A	p.V2146V	GTTTGTGCCTTGT	.	283.0	60.0	173.0	0.0	.	Atlas-SNP
ACOT2	10965	hgsc.bcm.edu	37	14	74040291	74040291	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ACOT2-91	NM_006821	exon2	c.C843T	p.P281P	TCATCCCGAGGTT	.	294.0	49.0	185.0	0.0	.	Atlas-SNP
SAMD15	161394	hgsc.bcm.edu	37	14	77845328	77845328	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SAMD15-90	NM_001010860	exon1	c.C1567T	p.R523W	AAGGAACGGGTCT	.	303.0	64.0	250.0	0.0	.	Atlas-SNP
ZC3H14	79882	hgsc.bcm.edu	37	14	89069362	89069362	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ZC3H14-93	NM_001160104	exon12	c.C1705T	p.L569L	CACTTGCTGAGCA	.	151.0	62.0	113.0	0.0	.	Atlas-SNP
SYNE3	161176	hgsc.bcm.edu	37	14	95884311	95884311	+	Missense_Mutation	SNP	G	G	A	rs142276866	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_152592	exon17	c.C2780T	p.A927V	GGGAGCGCCACAC	.	182.0	81.0	41.0	0.0	G|1.000;A|0.000	Atlas-SNP
ZNF839	55778	hgsc.bcm.edu	37	14	102793112	102793112	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ZNF839-91	NM_001267828	exon2	c.C731T	p.T244M	GGTGCACGGAGGA	.	145.0	68.0	62.0	0.0	.	Atlas-SNP
PPP1R13B	23368	hgsc.bcm.edu	37	14	104205313	104205313	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PPP1R13B-227	NM_015316	exon13	c.C2640T	p.H880H	CAGCCCGTGCCCC	.	160.0	82.0	103.0	0.0	.	Atlas-SNP
NIN	51199	hgsc.bcm.edu	37	14	51237214	51237215	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	NIN-229	NM_016350	exon12	c.1326_1327del	p.442_443del	.	.	125.0	59.0	88.0	0.0	.	Atlas-Indel
PSMC1	5700	hgsc.bcm.edu	37	14	90730133	90730137	+	Frame_Shift_Del	DEL	TTTCA	TTTCA	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	TTTCA	TTTCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PSMC1-90	NM_002802	exon5	c.406_410del	p.136_137del	.	.	283.0	62.0	191.0	0.0	.	Atlas-Indel
ACSBG1	23205	hgsc.bcm.edu	37	15	78466041	78466041	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ACSBG1-91	NM_001199377	exon13	c.C1971T	p.I657I	CTCTTCGATGGCC	.	78.0	35.0	105.0	0.0	.	Atlas-SNP
CRTC3	64784	hgsc.bcm.edu	37	15	91184391	91184391	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CRTC3-393	NM_022769	exon14	c.G1611A	p.P537P	AAGCCCGTATTCC	.	110.0	45.0	130.0	0.0	.	Atlas-SNP
LACTB	114294	hgsc.bcm.edu	37	15	63433897	63433897	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	LACTB-90	NM_032857	exon6	c.1536delT	p.V512fs	.	.	73.0	32.0	90.0	0.0	.	Atlas-Indel
SSTR5	6755	hgsc.bcm.edu	37	16	1129594	1129594	+	Silent	SNP	G	G	A	rs201314089		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SSTR5-522	NM_001053	exon1	c.G726A	p.S242S	GCGCTCGGAGCGG	.	55.0	14.0	7.0	0.0	G|0.999;A|0.001	Atlas-SNP
IGFALS	3483	hgsc.bcm.edu	37	16	1841949	1841949	+	Missense_Mutation	SNP	C	C	T	rs199977317		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	IGFALS-90	NM_001146006	exon2	c.G584A	p.R195H	CTCAGACGGTTGT	.	109.0	74.0	6.0	0.0	C|0.999;T|0.000	Atlas-SNP
HMOX2	3163	hgsc.bcm.edu	37	16	4558130	4558130	+	Silent	SNP	C	C	T	rs186971432		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	HMOX2-90	NM_002134	exon4	c.C621T	p.N207N	GATGAACGCCCTG	.	724.0	294.0	497.0	2.0	C|0.999;T|0.000	Atlas-SNP
LCMT1	51451	hgsc.bcm.edu	37	16	25151548	25151548	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	LCMT1-22	NM_016309	exon4	c.G384A	p.T128T	TGTCACGAGAAAG	.	142.0	62.0	130.0	0.0	.	Atlas-SNP
ABCC12	94160	hgsc.bcm.edu	37	16	48155704	48155704	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ABCC12-93	NM_033226	exon11	c.C1635T	p.Y545Y	TGAAACGTAGGCC	.	176.0	93.0	132.0	0.0	.	Atlas-SNP
SNX20	124460	hgsc.bcm.edu	37	16	50707433	50707433	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SNX20-23	NM_182854	exon4	c.G835A	p.A279T	CCAGCGCGTAGGC	.	94.0	60.0	6.0	0.0	.	Atlas-SNP
NOD2	64127	hgsc.bcm.edu	37	16	50744753	50744753	+	Missense_Mutation	SNP	C	C	T	rs104895427		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	NOD2-231	NM_022162	exon4	c.C931T	p.R311W	CTGCAGCGGCTGC	.	104.0	54.0	46.0	0.0	C|0.999;T|0.001	Atlas-SNP
RANBP10	57610	hgsc.bcm.edu	37	16	67765468	67765468	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	RANBP10-227	NM_020850	exon7	c.G796A	p.V266M	GATGCACGAGGTA	.	275.0	29.0	136.0	0.0	.	Atlas-SNP
PDPR	55066	hgsc.bcm.edu	37	16	70190402	70190402	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PDPR-135	NM_017990	exon19	c.G2260A	p.A754T	CGCGACGCCCTCC	.	230.0	30.0	128.0	0.0	.	Atlas-SNP
DHODH	1723	hgsc.bcm.edu	37	16	72057466	72057466	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	DHODH-227	NM_001361	exon8	c.C1067T	p.T356M	TGTACACGGCCCT	.	62.0	24.0	37.0	0.0	.	Atlas-SNP
MBTPS1	8720	hgsc.bcm.edu	37	16	84129260	84129260	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MBTPS1-92	NM_003791	exon4	c.G572A	p.R191H	ACCTGGCGCGGGA	.	131.0	22.0	77.0	0.0	.	Atlas-SNP
IL17C	27189	hgsc.bcm.edu	37	16	88706308	88706308	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	IL17C-90	NM_013278	exon3	c.G422A	p.R141H	CGGGCCGCGAGAC	.	47.0	25.0	9.0	0.0	.	Atlas-SNP
ANKRD11	29123	hgsc.bcm.edu	37	16	89352532	89352532	+	Silent	SNP	C	C	T	rs149525788	alternate_allele	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ANKRD11-139	NM_013275	exon8	c.G807A	p.T269T	CAGCGGCGTCTCG	.	158.0	41.0	104.0	0.0	C|1.000;G|0.000	Atlas-SNP
ATXN2L	11273	hgsc.bcm.edu	37	16	28847350	28847350	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ATXN2L-92	NM_148416	exon22	c.2991delT	p.H997fs	.	.	35.0	12.0	7.0	0.0	.	Atlas-Indel
PRSS8	5652	hgsc.bcm.edu	37	16	31144689	31144689	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_002773	exon3	c.125delA	p.Q42fs	.	.	238.0	130.0	58.0	0.0	.	Atlas-Indel
MYO1C	4641	hgsc.bcm.edu	37	17	1371412	1371412	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MYO1C-90	NM_001080950	exon28	c.G2709A	p.A903A	AGGCACCGCATAC	.	88.0	43.0	60.0	0.0	.	Atlas-SNP
VMO1	284013	hgsc.bcm.edu	37	17	4688850	4688850	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	VMO1-69	NM_182566	exon3	c.C416T	p.A139V	TTGTTCGCTGCTG	.	106.0	47.0	43.0	0.0	.	Atlas-SNP
TP53	7157	hgsc.bcm.edu	37	17	7577121	7577121	+	Missense_Mutation	SNP	G	G	A	rs121913343	bycluster	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	TP53,brain,glioma,0	TP53-70225	NM_001126114	exon8	c.C817T	p.R273C	AAACACGCACCTC	.	79.0	74.0	119.0	0.0	.	Atlas-SNP
ADPRM	56985	hgsc.bcm.edu	37	17	10614312	10614312	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_020233	exon4	c.G880A	p.V294I	TACCACGTCAACC	.	132.0	19.0	171.0	0.0	.	Atlas-SNP
DNAH9	1770	hgsc.bcm.edu	37	17	11778483	11778483	+	Missense_Mutation	SNP	C	C	T	rs145738103	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	DNAH9-168	NM_001372	exon53	c.C10460T	p.T3487M	GGGTCACGCAGAT	.	77.0	5.0	95.0	0.0	C|0.999;T|0.001	Atlas-SNP
LHX1	3975	hgsc.bcm.edu	37	17	35298051	35298051	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	LHX1-92	NM_005568	exon3	c.G542A	p.R181Q	AGCGGCGGGGACC	.	194.0	172.0	79.0	0.0	.	Atlas-SNP
IKZF3	22806	hgsc.bcm.edu	37	17	37934013	37934013	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	IKZF3-971	NM_001257410	exon6	c.G456T	p.A152A	TGCCTCCGCACTT	.	105.0	42.0	95.0	0.0	.	Atlas-SNP
RAPGEFL1	51195	hgsc.bcm.edu	37	17	38345578	38345578	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	RAPGEFL1-229	NM_016339	exon6	c.C447T	p.P149P	GGAGCCCGCGGGG	.	58.0	39.0	110.0	0.0	.	Atlas-SNP
SMARCE1	6605	hgsc.bcm.edu	37	17	38786977	38786977	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SMARCE1-227	NM_003079	exon10	c.C1016T	p.P339L	TCCATCGGAATGT	.	71.0	63.0	121.0	0.0	.	Atlas-SNP
KRT33B	3884	hgsc.bcm.edu	37	17	39521212	39521212	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	KRT33B-90	NM_002279	exon6	c.C916T	p.R306C	TGTAGCGGGCCTC	.	107.0	104.0	83.0	0.0	.	Atlas-SNP
KRT32	3882	hgsc.bcm.edu	37	17	39623234	39623234	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	KRT32-90	NM_002278	exon1	c.G344A	p.R115Q	AGCTGCCGCACCC	.	86.0	38.0	89.0	0.0	.	Atlas-SNP
CNTNAP1	8506	hgsc.bcm.edu	37	17	40838076	40838076	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CNTNAP1-525	NM_003632	exon6	c.C817T	p.R273C	TTTGGCCGCGATG	.	164.0	76.0	187.0	0.0	.	Atlas-SNP
WNK4	65266	hgsc.bcm.edu	37	17	40948205	40948205	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	WNK4-336	NM_032387	exon17	c.C3496T	p.R1166W	TACAGCCGGCTGG	.	52.0	47.0	21.0	0.0	.	Atlas-SNP
AOC3	8639	hgsc.bcm.edu	37	17	41004636	41004636	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	AOC3-516	NM_003734	exon1	c.C1276T	p.R426C	ACAATACGTGATG	.	168.0	9.0	196.0	0.0	.	Atlas-SNP
HDAC5	10014	hgsc.bcm.edu	37	17	42170066	42170066	+	Silent	SNP	G	G	A	rs199980075		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	HDAC5-227	NM_001015053	exon7	c.C753T	p.D251D	GAAGTCGTCTCGA	.	69.0	60.0	81.0	0.0	G|0.999;A|0.000	Atlas-SNP
ZNF652	22834	hgsc.bcm.edu	37	17	47395005	47395005	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ZNF652-91	NM_001145365	exon2	c.G83A	p.R28H	CCACGACGGCTAT	.	218.0	120.0	254.0	0.0	.	Atlas-SNP
YPEL2	388403	hgsc.bcm.edu	37	17	57430826	57430826	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	YPEL2-90	NM_001005404	exon2	c.G56A	p.R19Q	GCCACCGGACCTA	.	123.0	112.0	149.0	0.0	.	Atlas-SNP
STRADA	92335	hgsc.bcm.edu	37	17	61780974	61780974	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	STRADA-547	NM_001003787	exon13	c.C1281T	p.D427D	CCAATCGTCCACC	.	86.0	23.0	132.0	0.0	.	Atlas-SNP
GRIN2C	2905	hgsc.bcm.edu	37	17	72843589	72843589	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	GRIN2C-228	NM_000835	exon9	c.C1859T	p.P620L	CCCCGCGGGTTCT	.	114.0	43.0	138.0	0.0	.	Atlas-SNP
ITGB4	3691	hgsc.bcm.edu	37	17	73750779	73750779	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ITGB4-227	NM_001005731	exon33	c.G4231A	p.V1411M	CACCGCGTGCTAA	.	164.0	151.0	178.0	1.0	.	Atlas-SNP
ZACN	353174	hgsc.bcm.edu	37	17	74077421	74077421	+	Missense_Mutation	SNP	G	G	A	rs143316623	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ZACN-90	NM_180990	exon6	c.G607A	p.V203I	GAATACGTAGTTT	.	195.0	14.0	221.0	0.0	G|0.998;A|0.002	Atlas-SNP
TMC6	11322	hgsc.bcm.edu	37	17	76118720	76118720	+	Missense_Mutation	SNP	C	C	T	rs150505551	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TMC6-90	NM_007267	exon10	c.G1193A	p.R398H	TGGAGGCGGGAGG	.	120.0	38.0	61.0	0.0	C|1.000;T|0.000	Atlas-SNP
CYTH1	9267	hgsc.bcm.edu	37	17	76695039	76695039	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CYTH1-228	NM_017456	exon8	c.G562A	p.V188I	AGAGGACGTAACA	.	104.0	48.0	144.0	0.0	.	Atlas-SNP
BAIAP2	10458	hgsc.bcm.edu	37	17	79031712	79031712	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	BAIAP2-90	NM_006340	exon3	c.C162T	p.D54D	CTTTGACGCCCTG	.	23.0	20.0	30.0	0.0	.	Atlas-SNP
ALOX12B	242	hgsc.bcm.edu	37	17	7982767	7982767	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ALOX12B-226	NM_001139	exon8	c.1019delT	p.L340fs	.	.	229.0	89.0	48.0	0.0	.	Pindel
STAT5B	6777	hgsc.bcm.edu	37	17	40364022	40364023	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	STAT5B-850	NM_012448	exon13	c.1660_1661del	p.554_554del	.	.	218.0	52.0	306.0	0.0	.	Pindel
DSG2	1829	hgsc.bcm.edu	37	18	29104699	29104699	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	DSG2-563	NM_001943	exon8	c.G862A	p.V288I	GTCAACGTAGAAG	.	173.0	137.0	250.0	0.0	.	Atlas-SNP
EPG5	57724	hgsc.bcm.edu	37	18	43529494	43529494	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	EPG5-580	NM_020964	exon5	c.C1453T	p.R485X	GGCATCGAAGAAT	.	61.0	24.0	104.0	0.0	.	Atlas-SNP
MBD1	4152	hgsc.bcm.edu	37	18	47796100	47796100	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MBD1-228	NM_015845	exon14	c.C1660A	p.P554T	CTCGTGGGTTCCA	.	144.0	51.0	177.0	0.0	.	Atlas-SNP
SHC2	25759	hgsc.bcm.edu	37	19	436677	436677	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SHC2-392	NM_012435	exon5	c.G727A	p.A243T	GGTTGGCGATGAC	.	155.0	39.0	6.0	0.0	.	Atlas-SNP
ABCA7	10347	hgsc.bcm.edu	37	19	1043419	1043419	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ABCA7-98	NM_019112	exon9	c.G877A	p.G293R	ATCCTCGGGAAGC	.	330.0	65.0	148.0	0.0	.	Atlas-SNP
C19orf24	55009	hgsc.bcm.edu	37	19	1277286	1277286	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	C19orf24-90	NM_017914	exon2	c.G386A	p.R129Q	AGTCCCGGAATCT	.	304.0	122.0	121.0	0.0	.	Atlas-SNP
REEP6	92840	hgsc.bcm.edu	37	19	1496349	1496349	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	REEP6-90	NM_138393	exon4	c.C414T	p.R138R	TCAGCGCGTCGTG	.	160.0	33.0	26.0	0.0	.	Atlas-SNP
PTPRS	5802	hgsc.bcm.edu	37	19	5206812	5206812	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PTPRS-357	NM_002850	exon38	c.C5820T	p.L1940L	GCTTCCGAGGTAC	.	221.0	51.0	114.0	0.0	.	Atlas-SNP
VAV1	7409	hgsc.bcm.edu	37	19	6833562	6833562	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	VAV1-1276	NM_001258207	exon16	c.G1538A	p.R513H	GCTACCGCTGCCA	.	63.0	27.0	52.0	0.0	.	Atlas-SNP
CAMSAP3	57662	hgsc.bcm.edu	37	19	7682925	7682925	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_001080429	exon19	c.C3813T	p.G1271G	GAAGGGCGGCGGC	.	80.0	9.0	31.0	0.0	.	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	37	19	9049154	9049154	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MUC16-566	NM_024690	exon5	c.C32477T	p.T10826M	GGATGCGTGACCA	.	418.0	94.0	280.0	0.0	.	Atlas-SNP
TYK2	7297	hgsc.bcm.edu	37	19	10476463	10476463	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TYK2-1009	NM_003331	exon7	c.G741A	p.P247P	TCGGCCCGGCTGG	.	262.0	146.0	36.0	0.0	.	Atlas-SNP
FBXW9	84261	hgsc.bcm.edu	37	19	12805414	12805414	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	FBXW9-227	NM_032301	exon3	c.C672T	p.T224T	CTCATGGGTACTA	.	254.0	126.0	143.0	0.0	.	Atlas-SNP
CACNA1A	773	hgsc.bcm.edu	37	19	13356010	13356010	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CACNA1A-67	NM_001127221	exon31	c.G4939A	p.V1647M	CAGTCACGAGGAT	.	176.0	83.0	111.0	0.0	.	Atlas-SNP
CACNA1A	773	hgsc.bcm.edu	37	19	13370425	13370425	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CACNA1A-67	NM_001127221	exon27	c.G4344T	p.W1448C	CAGAGCCCACAGC	.	221.0	115.0	175.0	0.0	.	Atlas-SNP
NOTCH3	4854	hgsc.bcm.edu	37	19	15276714	15276714	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	NOTCH3-855	NM_000435	exon30	c.C5551T	p.R1851C	CAGCACGGGCATA	.	239.0	32.0	68.0	0.0	.	Atlas-SNP
C19orf44	84167	hgsc.bcm.edu	37	19	16611814	16611814	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	C19orf44-90	NM_032207	exon2	c.G211A	p.G71R	GTGCTCGGGAGTG	.	109.0	59.0	77.0	0.0	.	Atlas-SNP
SIN3B	23309	hgsc.bcm.edu	37	19	16986968	16986968	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SIN3B-228	NM_015260	exon16	c.G2791A	p.V931I	CGCTGCGTCCGCG	.	265.0	137.0	55.0	0.0	.	Atlas-SNP
MYO9B	4650	hgsc.bcm.edu	37	19	17283599	17283599	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MYO9B-67	NM_001130065	exon13	c.G1967A	p.R656Q	ACATGCGGCCAGA	.	144.0	29.0	56.0	0.0	.	Atlas-SNP
COLGALT1	79709	hgsc.bcm.edu	37	19	17679361	17679361	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_024656	exon5	c.G668A	p.R223Q	GCAAGCGAGACCG	.	240.0	50.0	144.0	0.0	.	Atlas-SNP
PIK3R2	5296	hgsc.bcm.edu	37	19	18279340	18279340	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PIK3R2-1311	NM_005027	exon14	c.A1792G	p.K598E	GGGATTAAAAATG	.	62.0	31.0	55.0	0.0	.	Atlas-SNP
FKBP8	23770	hgsc.bcm.edu	37	19	18650417	18650417	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	FKBP8-227	NM_012181	exon3	c.C406T	p.R136W	GCACCCGTGTGCC	.	173.0	80.0	19.0	0.0	.	Atlas-SNP
NCAN	1463	hgsc.bcm.edu	37	19	19360612	19360612	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	NCAN-94	NM_004386	exon15	c.C3858A	p.H1286Q	CCACCACCACCAA	.	365.0	102.0	259.0	0.0	.	Atlas-SNP
ZNF429	353088	hgsc.bcm.edu	37	19	21720662	21720662	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ZNF429-516	NM_001001415	exon4	c.A1807C	p.N603H	GCTTTTAATCGGT	.	49.0	13.0	47.0	0.0	.	Atlas-SNP
GPATCH1	55094	hgsc.bcm.edu	37	19	33616095	33616095	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	GPATCH1-91	NM_018025	exon18	c.G2606A	p.R869Q	ACAGGCGGAAGAA	.	183.0	39.0	101.0	0.0	.	Atlas-SNP
MLL4	8085	hgsc.bcm.edu	37	19	36222925	36222925	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MLL4-697	NM_014727	exon27	c.G5554A	p.A1852T	GGCAGCGCCCCTC	.	73.0	18.0	35.0	0.0	.	Atlas-SNP
ZNF781	163115	hgsc.bcm.edu	37	19	38160733	38160733	+	Missense_Mutation	SNP	C	C	T	rs12460961	byhapmap	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ZNF781-90	NM_152605	exon4	c.G317A	p.R106Q	TGATGTCGAATAA	.	66.0	34.0	46.0	0.0	C|1.000;|0.000	Atlas-SNP
SIPA1L3	23094	hgsc.bcm.edu	37	19	38591715	38591715	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SIPA1L3-91	NM_015073	exon6	c.C1878T	p.G626G	GGTGGGCATCCTC	.	177.0	32.0	103.0	0.0	.	Atlas-SNP
RYR1	6261	hgsc.bcm.edu	37	19	38993359	38993359	+	Silent	SNP	G	G	A	rs201827284		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	RYR1-100	NM_001042723	exon48	c.G7827A	p.S2609S	CATGTCGCTCTGC	.	82.0	37.0	15.0	0.0	G|0.999;A|0.000	Atlas-SNP
FCGBP	8857	hgsc.bcm.edu	37	19	40412003	40412003	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	FCGBP-98	NM_003890	exon7	c.G3625A	p.G1209R	CACATCCGGGGCC	.	169.0	21.0	14.0	0.0	.	Atlas-SNP
KLC3	147700	hgsc.bcm.edu	37	19	45852157	45852157	+	Missense_Mutation	SNP	G	G	A	rs190310418	by1000genomes	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	KLC3-91	NM_177417	exon7	c.G947A	p.R316H	GCCAGCGCGCTTT	.	122.0	29.0	47.0	0.0	G|0.999;A|0.000	Atlas-SNP
FKRP	79147	hgsc.bcm.edu	37	19	47259950	47259950	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	FKRP-91	NM_024301	exon4	c.G1243A	p.V415M	TTGCACGTGGACC	.	123.0	55.0	34.0	0.0	.	Atlas-SNP
ZC3H4	23211	hgsc.bcm.edu	37	19	47571027	47571027	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ZC3H4-74	NM_015168	exon15	c.C2498T	p.P833L	GAAGCCGGGGGTC	.	83.0	42.0	25.0	0.0	.	Atlas-SNP
GLTSCR1	29998	hgsc.bcm.edu	37	19	48204610	48204610	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	GLTSCR1-48	NM_015711	exon15	c.G3621A	p.S1207S	CCGCTCGCTCGGC	.	98.0	36.0	27.0	0.0	.	Atlas-SNP
ZNF836	162962	hgsc.bcm.edu	37	19	52658977	52658977	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ZNF836-46	NM_001102657	exon5	c.A1959G	p.L653L	ACGTGCTAGGCAT	.	177.0	18.0	122.0	0.0	.	Atlas-SNP
ZNF701	55762	hgsc.bcm.edu	37	19	53086056	53086056	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ZNF701-90	NM_018260	exon4	c.C744T	p.C248C	TGTATGCGGCAAG	.	375.0	184.0	293.0	0.0	.	Atlas-SNP
ZNF665	79788	hgsc.bcm.edu	37	19	53668192	53668192	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ZNF665-70	NM_024733	exon4	c.T1551C	p.N517N	ACACTCATTACAC	.	149.0	85.0	90.0	0.0	.	Atlas-SNP
LILRB2	10288	hgsc.bcm.edu	37	19	54782326	54782326	+	Missense_Mutation	SNP	C	C	T	rs202223934		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	LILRB2-91	NM_001080978	exon7	c.G1046A	p.R349Q	AACTGCCGCCATG	.	589.0	282.0	424.0	1.0	C|0.999;T|0.001	Atlas-SNP
LILRB1	10859	hgsc.bcm.edu	37	19	55144512	55144512	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	LILRB1-137	NM_001081639	exon7	c.C1004T	p.T335M	GCCCCACGGTGGC	.	356.0	67.0	185.0	0.0	.	Atlas-SNP
FAM71E2	284418	hgsc.bcm.edu	37	19	55872251	55872251	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_001145402	exon7	c.G781A	p.D261N	TTCTGTCGGGGCG	.	119.0	27.0	84.0	0.0	.	Atlas-SNP
FIZ1	84922	hgsc.bcm.edu	37	19	56105009	56105009	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	FIZ1-90	NM_032836	exon3	c.G298A	p.V100I	TGTGGACGACCTA	.	295.0	133.0	119.0	0.0	.	Atlas-SNP
ZFP28	140612	hgsc.bcm.edu	37	19	57066397	57066397	+	Missense_Mutation	SNP	G	G	A	rs139300625		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ZFP28-91	NM_020828	exon8	c.G2243A	p.R748H	GTCATCGCAGAAG	.	120.0	26.0	72.0	0.0	G|1.000;A|0.000	Atlas-SNP
ZNF264	9422	hgsc.bcm.edu	37	19	57723746	57723746	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ZNF264-92	NM_003417	exon4	c.C1281T	p.F427F	GCCCTTCGTGTGC	.	157.0	25.0	98.0	0.0	.	Atlas-SNP
ZNF805	390980	hgsc.bcm.edu	37	19	57765484	57765484	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_001023563	exon4	c.G1297A	p.G433R	GAATGCGGAAAGG	.	125.0	52.0	81.0	0.0	.	Atlas-SNP
ZNF419	79744	hgsc.bcm.edu	37	19	58004983	58004983	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ZNF419-90	NM_001098494	exon4	c.G962A	p.S321N	TCTATAGCCACAA	.	150.0	26.0	113.0	0.0	.	Atlas-SNP
SHC2	25759	hgsc.bcm.edu	37	19	422360	422360	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SHC2-392	NM_012435	exon11	c.1407delT	p.P469fs	.	.	144.0	33.0	7.0	0.0	.	Atlas-Indel
EML2	24139	hgsc.bcm.edu	37	19	46129994	46129994	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	EML2-154	NM_012155	exon8	c.711delC	p.G237fs	.	.	127.0	50.0	77.0	0.0	.	Atlas-Indel
FZR1	51343	hgsc.bcm.edu	37	19	3532525	3532525	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	FZR1-227	NM_016263	exon11	c.1118delC	p.S373fs	.	.	265.0	64.0	31.0	0.0	.	Pindel
DMWD	1762	hgsc.bcm.edu	37	19	46289388	46289388	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	DMWD-90	NM_004943	exon3	c.1367delT	p.L456fs	.	.	145.0	39.0	15.0	0.0	.	Pindel
BAX	581	hgsc.bcm.edu	37	19	49458971	49458971	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	BAX-1271	NM_138761	exon3	c.113delT	p.M38fs	.	.	287.0	64.0	157.0	0.0	.	Pindel
FLT3LG	2323	hgsc.bcm.edu	37	19	49982165	49982166	+	Splice_Site	INS	-	-	C	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	FLT3LG-115	NM_001204502	exon6	c.343-1->C	.	.	.	99.0	21.0	26.0	0.0	.	Pindel
PLEKHG5	57449	hgsc.bcm.edu	37	1	6534211	6534211	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PLEKHG5-652	NM_001042664	exon7	c.T453C	p.P151P	ATCTCCAGGCTTG	.	58.0	43.0	52.0	0.0	.	Atlas-SNP
MASP2	10747	hgsc.bcm.edu	37	1	11105562	11105562	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MASP2-94	NM_139208	exon4	c.G447A	p.A149A	GGTGGGCGCCTCT	.	134.0	115.0	6.0	0.0	.	Atlas-SNP
SPEN	23013	hgsc.bcm.edu	37	1	16254767	16254767	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SPEN-298	NM_015001	exon11	c.C2032T	p.R678W	GATCCTCGGGAAT	.	162.0	149.0	230.0	2.0	.	Atlas-SNP
EIF4G3	8672	hgsc.bcm.edu	37	1	21276548	21276548	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	EIF4G3-91	NM_003760	exon8	c.C603T	p.S201S	ATGAGCGCTCTCC	.	93.0	44.0	79.0	0.0	.	Atlas-SNP
SRRM1	10250	hgsc.bcm.edu	37	1	24993380	24993380	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SRRM1-93	NM_005839	exon13	c.G1703A	p.R568Q	CTCCTCGACGGCG	.	395.0	149.0	509.0	0.0	.	Atlas-SNP
C1orf172	126695	hgsc.bcm.edu	37	1	27278436	27278436	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	C1orf172-154	NM_152365	exon2	c.C436T	p.R146W	CATCCCGCCGGCT	.	108.0	8.0	55.0	0.0	.	Atlas-SNP
SLC9A1	6548	hgsc.bcm.edu	37	1	27429001	27429001	+	Silent	SNP	G	G	A	rs144261466		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SLC9A1-91	NM_003047	exon8	c.C1695T	p.G565G	GCGCTCGCCAGCT	.	63.0	59.0	58.0	0.0	G|1.000;A|0.000	Atlas-SNP
KIAA0754	643314	hgsc.bcm.edu	37	1	39876656	39876656	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_015038	exon1	c.T719C	p.V240A	AAGCTGTAGCAAC	.	100.0	77.0	147.0	0.0	.	Atlas-SNP
KIAA0754	643314	hgsc.bcm.edu	37	1	39880128	39880128	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_015038	exon1	c.C4191T	p.T1397T	TGCAACCGCTGGA	.	143.0	123.0	127.0	0.0	.	Atlas-SNP
ARTN	9048	hgsc.bcm.edu	37	1	44402375	44402375	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ARTN-90	NM_057091	exon5	c.G601A	p.V201I	ATGGACGTCAACA	.	85.0	30.0	7.0	0.0	.	Atlas-SNP
SLC5A9	200010	hgsc.bcm.edu	37	1	48701436	48701436	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SLC5A9-93	NM_001135181	exon11	c.G1252A	p.A418T	ATGGCCGCTCTCA	.	255.0	15.0	313.0	0.0	.	Atlas-SNP
C8B	732	hgsc.bcm.edu	37	1	57415368	57415368	+	Missense_Mutation	SNP	G	G	A	rs150146785	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	C8B,NS,carcinoma,0	C8B-92	NM_000066	exon6	c.C724T	p.R242C	CATTGCGTTCAAA	.	60.0	51.0	98.0	1.0	G|0.999;A|0.001	Atlas-SNP
DOCK7	85440	hgsc.bcm.edu	37	1	62940939	62940939	+	Silent	SNP	G	G	A	rs202231787		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	DOCK7-92	NM_001272000	exon46	c.C5925T	p.P1975P	GTCTGCGGGATCC	.	108.0	10.0	139.0	0.0	G|0.999;A|0.001	Atlas-SNP
FNDC7	163479	hgsc.bcm.edu	37	1	109273459	109273459	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	FNDC7-92	NM_001144937	exon9	c.C1788T	p.C596C	AGGATGCATCACA	.	134.0	8.0	178.0	0.0	.	Atlas-SNP
CSF1	1435	hgsc.bcm.edu	37	1	110467421	110467421	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CSF1-91	NM_172210	exon8	c.G1245A	p.A415A	GAGAGCGGATTCT	.	163.0	67.0	248.0	0.0	.	Atlas-SNP
MOV10	4343	hgsc.bcm.edu	37	1	113237220	113237220	+	Missense_Mutation	SNP	G	G	A	rs112768939		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MOV10-95	NM_020963	exon9	c.G1441A	p.V481I	CGGGACGTCCCGC	.	107.0	94.0	56.0	0.0	A|0.000;C|0.000;G|0.999	Atlas-SNP
ADAMTSL4	54507	hgsc.bcm.edu	37	1	150531111	150531111	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ADAMTSL4-92	NM_019032	exon15	c.G2545A	p.D849N	CACAGCGACTGGA	.	62.0	7.0	62.0	0.0	.	Atlas-SNP
TPM3	7170	hgsc.bcm.edu	37	1	154141804	154141804	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TPM3-416	NM_152263	exon9	c.C831T	p.H277H	GAGGGCGTGGTCC	.	161.0	77.0	253.0	0.0	.	Atlas-SNP
ARHGEF11	9826	hgsc.bcm.edu	37	1	156908212	156908212	+	Missense_Mutation	SNP	G	G	A	rs141649554		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ARHGEF11-233	NM_198236	exon38	c.C4190T	p.T1397M	TTACCCGTAGCCT	.	125.0	110.0	166.0	0.0	G|1.000;A|0.000	Atlas-SNP
ATP1A2	477	hgsc.bcm.edu	37	1	160100011	160100011	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ATP1A2-518	NM_000702	exon12	c.C1581T	p.L527L	CCCGCTCGACAAG	.	66.0	61.0	77.0	0.0	.	Atlas-SNP
USP21	27005	hgsc.bcm.edu	37	1	161130593	161130593	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	USP21-660	NM_012475	exon2	c.C163T	p.R55W	CCTCCCCGGCCAG	.	63.0	57.0	58.0	0.0	.	Atlas-SNP
FAM5B	57795	hgsc.bcm.edu	37	1	177245455	177245455	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	FAM5B-28	NM_021165	exon6	c.C897T	p.C299C	CAAGTGCAGCCCC	.	396.0	175.0	427.0	0.0	.	Atlas-SNP
KIAA1614	57710	hgsc.bcm.edu	37	1	180914481	180914481	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	KIAA1614-26	NM_020950	exon9	c.C3330T	p.D1110D	GGAGGACGTGGGT	.	48.0	43.0	8.0	0.0	.	Atlas-SNP
SRGAP2D	100996712	hgsc.bcm.edu	37	1	206566076	206566076	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_001271887	exon2	c.G58A	p.D20N	AATGCCGACAGCA	.	900.0	133.0	1069.0	0.0	.	Atlas-SNP
RASSF5	83593	hgsc.bcm.edu	37	1	206757996	206757996	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	RASSF5-660	NM_182663	exon4	c.G968A	p.R323Q	TTAAGCGGATACA	.	142.0	124.0	207.0	0.0	.	Atlas-SNP
RYR2	6262	hgsc.bcm.edu	37	1	237811912	237811912	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	RYR2-158	NM_001035	exon49	c.C7511T	p.T2504M	TAGATACGGTGAG	.	68.0	4.0	92.0	0.0	.	Atlas-SNP
ATAD3B	83858	hgsc.bcm.edu	37	1	1431081	1431081	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ATAD3B-44	NM_031921	exon16	c.1830delC	p.P610fs	.	.	86.0	18.0	32.0	0.0	.	Atlas-Indel
RPL22	6146	hgsc.bcm.edu	37	1	6257785	6257785	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	RPL22-650	NM_000983	exon2	c.45delG	p.K15fs	.	.	22.0	18.0	38.0	0.0	.	Atlas-Indel
ARHGEF10L	55160	hgsc.bcm.edu	37	1	17982377	17982377	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ARHGEF10L-292	NM_018125	exon24	c.2484delC	p.V828fs	.	.	94.0	83.0	74.0	0.0	.	Atlas-Indel
CSF3R	1441	hgsc.bcm.edu	37	1	36935323	36935323	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CSF3R-515	NM_000760	exon11	c.1405delA	p.S469fs	.	.	55.0	39.0	26.0	0.0	.	Atlas-Indel
SYCP1	6847	hgsc.bcm.edu	37	1	115537601	115537601	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SYCP1-91	NM_003176	exon32	c.2891delG	p.R964fs	.	.	59.0	11.0	68.0	0.0	.	Atlas-Indel
ADAMTSL4	54507	hgsc.bcm.edu	37	1	150530506	150530506	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ADAMTSL4-92	NM_025008	exon14	c.2262delT	p.F754fs	.	.	49.0	26.0	7.0	0.0	.	Atlas-Indel
CR2	1380	hgsc.bcm.edu	37	1	207642044	207642044	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CR2-232	NM_001877	exon3	c.617delT	p.V206fs	.	.	60.0	57.0	97.0	0.0	.	Atlas-Indel
GDAP2	54834	hgsc.bcm.edu	37	1	118439565	118439568	+	Frame_Shift_Del	DEL	GAAA	GAAA	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	GAAA	GAAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	GDAP2-92	NM_017686	exon8	c.841_844del	p.281_282del	.	.	52.0	32.0	95.0	0.0	.	Pindel
PDYN	5173	hgsc.bcm.edu	37	20	1961122	1961122	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PDYN-92	NM_001190892	exon3	c.C612A	p.Y204X	GCGTTTGTACAGG	.	88.0	83.0	154.0	0.0	.	Atlas-SNP
C20orf27	54976	hgsc.bcm.edu	37	20	3734755	3734755	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	C20orf27-90	NM_001258429	exon6	c.G475A	p.A159T	GCTCGGCGCCCAC	.	211.0	55.0	44.0	0.0	.	Atlas-SNP
DZANK1	55184	hgsc.bcm.edu	37	20	18424085	18424085	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_001099407	exon8	c.G653A	p.R218Q	GATGGCCGGGGGG	.	215.0	199.0	233.0	0.0	.	Atlas-SNP
PLAGL2	5326	hgsc.bcm.edu	37	20	30785207	30785207	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PLAGL2-651	NM_002657	exon3	c.G539A	p.R180H	ACCCGGCGTGAGT	.	95.0	14.0	71.0	0.0	.	Atlas-SNP
EPB41L1	2036	hgsc.bcm.edu	37	20	34778675	34778675	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	EPB41L1-93	NM_001258329	exon12	c.G1256A	p.R419H	TTGAGCGTTCTTC	.	56.0	47.0	59.0	0.0	.	Atlas-SNP
PLCG1	5335	hgsc.bcm.edu	37	20	39793679	39793679	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PLCG1-911	NM_002660	exon13	c.G1324A	p.V442M	AAGCCCGTGGAGA	.	124.0	57.0	169.0	0.0	.	Atlas-SNP
DIDO1	11083	hgsc.bcm.edu	37	20	61522425	61522425	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	DIDO1-96	NM_001193370	exon15	c.G3428A	p.R1143H	CGGCCACGGCTGC	.	167.0	9.0	186.0	0.0	.	Atlas-SNP
ESF1	51575	hgsc.bcm.edu	37	20	13695562	13695563	+	Frame_Shift_Del	DEL	TT	TT	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ESF1-91	NM_016649	exon14	c.2515_2516del	p.839_839del	.	.	46.0	40.0	74.0	0.0	.	Atlas-Indel
SCAF4	57466	hgsc.bcm.edu	37	21	33065781	33065781	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SCAF4-90	NM_001145444	exon11	c.C1294T	p.R432X	TAGATCGCCTCCT	.	72.0	17.0	88.0	0.0	.	Atlas-SNP
SIM2	6493	hgsc.bcm.edu	37	21	38098480	38098480	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SIM2-90	NM_009586	exon6	c.G604A	p.D202N	CTGTACGACTCCT	.	117.0	9.0	112.0	0.0	.	Atlas-SNP
PFKL	5211	hgsc.bcm.edu	37	21	45736189	45736189	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PFKL-251	NM_002626	exon8	c.C810T	p.N270N	CCGCAACGGGAAG	.	189.0	65.0	97.0	0.0	.	Atlas-SNP
PFKL	5211	hgsc.bcm.edu	37	21	45744758	45744758	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PFKL-251	NM_002626	exon18	c.C1835T	p.T612M	ACATGACGGAGAA	.	143.0	83.0	76.0	0.0	.	Atlas-SNP
COL18A1	80781	hgsc.bcm.edu	37	21	46900432	46900432	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	COL18A1-90	NM_030582	exon11	c.C1990T	p.R664W	GCCCTGCGGGTGA	.	50.0	5.0	70.0	0.0	.	Atlas-SNP
BRWD1	54014	hgsc.bcm.edu	37	21	40667746	40667746	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	BRWD1-94	NM_033656	exon7	c.533delT	p.M178fs	.	.	92.0	83.0	103.0	0.0	.	Atlas-Indel
PRODH	5625	hgsc.bcm.edu	37	22	18900804	18900804	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PRODH-289	NM_001195226	exon14	c.C1363T	p.R455C	CACGGCGGGACAA	.	187.0	10.0	81.0	0.0	.	Atlas-SNP
ZNRF3	84133	hgsc.bcm.edu	37	22	29444383	29444383	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ZNRF3-69	NM_032173	exon7	c.C619T	p.R207W	GAGCTGCGGGTCA	.	161.0	145.0	169.0	1.0	.	Atlas-SNP
CACNA1I	8911	hgsc.bcm.edu	37	22	39966861	39966861	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CACNA1I-135	NM_021096	exon1	c.C104T	p.P35L	CCTCCCCGCCAGG	.	74.0	7.0	33.0	0.0	.	Atlas-SNP
TTC28	23331	hgsc.bcm.edu	37	22	28389367	28389367	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_001145418	exon18	c.5385delA	p.P1795fs	.	.	44.0	22.0	7.0	0.0	.	Atlas-Indel
TMPRSS6	164656	hgsc.bcm.edu	37	22	37466579	37466579	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TMPRSS6-292	NM_153609	exon15	c.1814delC	p.A605fs	.	.	134.0	112.0	92.0	0.0	.	Atlas-Indel
TNRC6B	23112	hgsc.bcm.edu	37	22	40661638	40661638	+	Nonsense_Mutation	DEL	A	A	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TNRC6B-22	NM_015088	exon5	c.1403delC	p.S468X	.	.	55.0	45.0	67.0	0.0	.	Atlas-Indel
TSSC1	7260	hgsc.bcm.edu	37	2	3196229	3196229	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TSSC1-90	NM_003310	exon8	c.C945T	p.D315D	ATCGTCGTCTACC	.	190.0	18.0	200.0	0.0	.	Atlas-SNP
TRIM54	57159	hgsc.bcm.edu	37	2	27505759	27505759	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TRIM54-227	NM_032546	exon1	c.G160A	p.V54I	AACGACGTCTTCC	.	133.0	119.0	170.0	1.0	.	Atlas-SNP
FOXN2	3344	hgsc.bcm.edu	37	2	48602109	48602109	+	Missense_Mutation	SNP	G	G	A	rs200645756		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	FOXN2-226	NM_002158	exon7	c.G823A	p.G275S	AGTTACGGCAATG	.	184.0	153.0	269.0	1.0	G|0.999;A|0.001	Atlas-SNP
FSHR	2492	hgsc.bcm.edu	37	2	49244660	49244660	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	FSHR-527	NM_181446	exon4	c.G342T	p.E114D	GAAGGCCTCAGGG	.	99.0	87.0	166.0	0.0	.	Atlas-SNP
USP34	9736	hgsc.bcm.edu	37	2	61571010	61571010	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	USP34-579	NM_014709	exon16	c.T2440C	p.S814P	GGTGAGATGTCAG	.	232.0	201.0	278.0	0.0	.	Atlas-SNP
TET3	200424	hgsc.bcm.edu	37	2	74273495	74273495	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_144993	exon1	c.G46A	p.A16T	CTAAGCGCCTCAG	.	90.0	17.0	98.0	0.0	.	Atlas-SNP
GLI2	2736	hgsc.bcm.edu	37	2	121744055	121744055	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	GLI2-954	NM_005270	exon12	c.C2158T	p.R720C	CAGCTGCGCAAAC	.	248.0	216.0	167.0	1.0	.	Atlas-SNP
PROC	5624	hgsc.bcm.edu	37	2	128185950	128185950	+	Missense_Mutation	SNP	C	C	T	rs121918154		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PROC-90	NM_000312	exon9	c.C814T	p.R272C	CTGCGGCGCTGGG	.	125.0	7.0	99.0	0.0	.	Atlas-SNP
NR4A2	4929	hgsc.bcm.edu	37	2	157186454	157186454	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	NR4A2-189	NM_006186	exon3	c.C245T	p.P82L	GACAGGGGCATTT	.	234.0	15.0	309.0	0.0	.	Atlas-SNP
COL5A2	1290	hgsc.bcm.edu	37	2	189898939	189898939	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	COL5A2,NS,carcinoma,+1	COL5A2-92	NM_000393	exon54	c.C4357T	p.R1453W	CATTCCGCTTCTG	.	77.0	12.0	91.0	0.0	.	Atlas-SNP
SDPR	8436	hgsc.bcm.edu	37	2	192700699	192700699	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SDPR-92	NM_004657	exon2	c.G1228A	p.D410N	CCCCATCGGAGCG	.	53.0	46.0	31.0	0.0	.	Atlas-SNP
SPATS2L	26010	hgsc.bcm.edu	37	2	201342532	201342532	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SPATS2L-48	NM_015535	exon13	c.C1455T	p.G485G	CAAAGGCGGTGCC	.	47.0	21.0	80.0	0.0	.	Atlas-SNP
MDH1B	130752	hgsc.bcm.edu	37	2	207615686	207615686	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MDH1B-94	NM_001039845	exon6	c.C1024T	p.R342C	CAGGGCGTGAATA	.	28.0	16.0	66.0	0.0	.	Atlas-SNP
UGT1A3	54659	hgsc.bcm.edu	37	2	234638283	234638283	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	UGT1A3-24	NM_019093	exon1	c.510delG	p.V170fs	.	.	251.0	207.0	325.0	0.0	.	Atlas-Indel
EML6	400954	hgsc.bcm.edu	37	2	55176077	55176077	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_001039753	exon28	c.4062delC	p.T1354fs	.	.	74.0	37.0	119.0	0.0	.	Pindel
AGFG1	3267	hgsc.bcm.edu	37	2	228384741	228384744	+	Frame_Shift_Del	DEL	GAAA	GAAA	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	GAAA	GAAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	AGFG1-228	NM_004504	exon3	c.338_341del	p.113_114del	.	.	104.0	59.0	185.0	0.0	.	Pindel
NR2C2	7182	hgsc.bcm.edu	37	3	15071882	15071882	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	NR2C2-226	NM_003298	exon10	c.G1090A	p.V364I	ATCCACGTCATCA	.	183.0	164.0	207.0	0.0	.	Atlas-SNP
TTC21A	199223	hgsc.bcm.edu	37	3	39180220	39180220	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TTC21A-91	NM_001105513	exon28	c.G3760A	p.D1254N	CACCCCGACTACC	.	106.0	93.0	146.0	1.0	.	Atlas-SNP
CCDC13	152206	hgsc.bcm.edu	37	3	42771959	42771959	+	Missense_Mutation	SNP	C	C	T	rs141485184	by1000genomes;alternate_allele	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CCDC13-91	NM_144719	exon13	c.G1718A	p.R573Q	TGTTACCGTTTCT	.	131.0	115.0	181.0	0.0	C|0.999;G|0.000	Atlas-SNP
NBEAL2	23218	hgsc.bcm.edu	37	3	47036641	47036641	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	NBEAL2-69	NM_015175	exon13	c.G1416A	p.A472A	CCTAGCGCAACGC	.	109.0	99.0	8.0	0.0	.	Atlas-SNP
KIF9	64147	hgsc.bcm.edu	37	3	47312930	47312930	+	Missense_Mutation	SNP	G	G	A	rs201201745		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	KIF9-91	NM_182902	exon5	c.C388T	p.R130C	TGGGGCGTTCTTC	.	80.0	8.0	126.0	0.0	G|1.000;A|0.000	Atlas-SNP
SCAP	22937	hgsc.bcm.edu	37	3	47465429	47465429	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SCAP-91	NM_012235	exon9	c.G1144A	p.A382T	CTTGGGCGATCCG	.	88.0	75.0	116.0	0.0	.	Atlas-SNP
BSN	8927	hgsc.bcm.edu	37	3	49694175	49694175	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	BSN-97	NM_003458	exon5	c.C7186T	p.R2396W	CTAGAGCGGGAAC	.	337.0	123.0	250.0	0.0	.	Atlas-SNP
SEMA3G	56920	hgsc.bcm.edu	37	3	52475300	52475300	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SEMA3G-70	NM_020163	exon7	c.C793T	p.R265C	CCACGCGGCTGAC	.	160.0	152.0	123.0	1.0	.	Atlas-SNP
MAGI1	9223	hgsc.bcm.edu	37	3	65365023	65365023	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MAGI1-661	NM_015520	exon18	c.G2992A	p.D998N	CCACGTCGTAGGG	.	74.0	73.0	32.0	0.0	.	Atlas-SNP
PLCXD2	257068	hgsc.bcm.edu	37	3	111432936	111432936	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PLCXD2-227	NM_153268	exon3	c.G827A	p.R276Q	TTGCCCGGGGCTT	.	33.0	33.0	18.0	0.0	.	Atlas-SNP
FBXO40	51725	hgsc.bcm.edu	37	3	121341510	121341510	+	Missense_Mutation	SNP	G	G	A	rs143415272		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	FBXO40-273	NM_016298	exon3	c.G1234A	p.V412I	GGCCACGTCATCT	.	103.0	83.0	129.0	0.0	G|1.000;A|0.000	Atlas-SNP
TMCC1	23023	hgsc.bcm.edu	37	3	129370538	129370538	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TMCC1-91	NM_001017395	exon6	c.G1748A	p.R583Q	AGGTTCCGGGCAG	.	149.0	134.0	161.0	0.0	.	Atlas-SNP
NPHP3	27031	hgsc.bcm.edu	37	3	132407633	132407633	+	Missense_Mutation	SNP	C	C	T	rs150867534		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	NPHP3-91	NM_153240	exon21	c.G2986A	p.V996M	ACTGCACGTATAC	.	87.0	10.0	79.0	0.0	C|0.999;T|0.000	Atlas-SNP
KY	339855	hgsc.bcm.edu	37	3	134322975	134322975	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	KY-24	NM_178554	exon11	c.G1432A	p.G478R	AGCGCCCGTCGCT	.	65.0	7.0	72.0	0.0	.	Atlas-SNP
SLC9A9	285195	hgsc.bcm.edu	37	3	142987727	142987727	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SLC9A9-229	NM_173653	exon15	c.A1700G	p.Q567R	TAGGCTTGAGGAC	.	172.0	73.0	233.0	0.0	.	Atlas-SNP
IGSF10	285313	hgsc.bcm.edu	37	3	151164728	151164728	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	IGSF10-102	NM_178822	exon4	c.G3041T	p.R1014M	ATTTTCCTCTGCC	.	72.0	62.0	112.0	0.0	.	Atlas-SNP
SLITRK3	22865	hgsc.bcm.edu	37	3	164907802	164907802	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SLITRK3-100	NM_014926	exon2	c.C817T	p.R273X	TTTCTCGTAGGTC	.	55.0	50.0	91.0	0.0	.	Atlas-SNP
ETV5	2119	hgsc.bcm.edu	37	3	185766567	185766567	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ETV5-706	NM_004454	exon13	c.C1394T	p.P465L	AGGAACGGACGCT	.	194.0	171.0	232.0	0.0	.	Atlas-SNP
FILIP1L	11259	hgsc.bcm.edu	37	3	99567122	99567123	+	Frame_Shift_Ins	INS	-	-	TA	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	FILIP1L-45	NM_001042459	exon5	c.3398_3399insTA	p.N1133fs	.	.	169.0	69.0	262.0	0.0	.	Pindel
UVSSA	57654	hgsc.bcm.edu	37	4	1374002	1374002	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_020894	exon11	c.G1736A	p.R579H	GTGAGCGCCAAGA	.	161.0	81.0	10.0	0.0	.	Atlas-SNP
MFSD10	10227	hgsc.bcm.edu	37	4	2933798	2933798	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MFSD10-68	NM_001120	exon6	c.G776A	p.R259H	TGGCCACGAGCGA	.	133.0	20.0	20.0	0.0	.	Atlas-SNP
ADRA2C	152	hgsc.bcm.edu	37	4	3768709	3768709	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ADRA2C-522	NM_000683	exon1	c.G376A	p.V126M	TGCGGCGTGTACC	.	178.0	45.0	25.0	0.0	.	Atlas-SNP
CRMP1	1400	hgsc.bcm.edu	37	4	5844857	5844857	+	Missense_Mutation	SNP	G	G	A	rs142255876		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CRMP1-92	NM_001313	exon7	c.C653T	p.T218M	GGACCCGTGATGC	.	359.0	31.0	216.0	0.0	G|1.000;A|0.000	Atlas-SNP
SORCS2	57537	hgsc.bcm.edu	37	4	7738821	7738821	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SORCS2-91	NM_020777	exon26	c.G3337A	p.A1113T	GTGTACGCCCAAA	.	273.0	110.0	125.0	0.0	.	Atlas-SNP
WDR1	9948	hgsc.bcm.edu	37	4	10086077	10086077	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	WDR1-48	NM_017491	exon9	c.C1029T	p.D343D	GTGTCCGTCGTGG	.	324.0	54.0	220.0	0.0	.	Atlas-SNP
FAM184B	27146	hgsc.bcm.edu	37	4	17636715	17636715	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	FAM184B-23	NM_015688	exon16	c.G2806A	p.A936T	ATGCTGCGTAGTG	.	95.0	29.0	71.0	0.0	.	Atlas-SNP
CCDC149	91050	hgsc.bcm.edu	37	4	24821571	24821571	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CCDC149-68	NM_173463	exon12	c.G1069A	p.D357N	TGGGGTCGCTGAA	.	253.0	113.0	150.0	0.0	.	Atlas-SNP
KDR	3791	hgsc.bcm.edu	37	4	55973911	55973911	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	KDR-2298	NM_002253	exon10	c.G1405A	p.E469K	TGGGCTCGTTGGC	.	282.0	147.0	190.0	0.0	.	Atlas-SNP
HNRPDL	9987	hgsc.bcm.edu	37	4	83347682	83347682	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	HNRPDL-91	NM_031372	exon6	c.G1126A	p.G376R	CATATCCGCCATA	.	156.0	70.0	116.0	0.0	.	Atlas-SNP
PKD2	5311	hgsc.bcm.edu	37	4	88996108	88996108	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PKD2-91	NM_000297	exon14	c.C2667T	p.A889A	GGTGGCCGAGGTC	.	295.0	78.0	231.0	0.0	.	Atlas-SNP
PCDH18	54510	hgsc.bcm.edu	37	4	138442414	138442414	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PCDH18-185	NM_019035	exon4	c.T3177C	p.S1059S	ATGCGTACTGGCT	.	267.0	104.0	170.0	0.0	.	Atlas-SNP
FRYL	285527	hgsc.bcm.edu	37	4	48555392	48555394	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	CTT	CTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	FRYL-69	NM_015030	exon36	c.4274_4276del	p.1425_1426del	.	.	97.0	30.0	85.0	0.0	.	Atlas-Indel
AMTN	401138	hgsc.bcm.edu	37	4	71394929	71394930	+	Splice_Site	INS	-	-	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	AMTN-153	NM_212557	exon7	c.357+2->A	.	.	.	194.0	63.0	180.0	0.0	.	Atlas-Indel
LARP7	51574	hgsc.bcm.edu	37	4	113578482	113578483	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	LARP7-93	NM_015454	exon13	c.1748_1749insA	p.X583delinsX	.	.	216.0	49.0	160.0	0.0	.	Atlas-Indel
CORIN	10699	hgsc.bcm.edu	37	4	47695103	47695103	+	Splice_Site	DEL	A	A	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CORIN-91	NM_006587	exon7	c.800-2T>-	.	.	.	51.0	10.0	47.0	0.0	.	Pindel
CLOCK	9575	hgsc.bcm.edu	37	4	56336954	56336954	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CLOCK-515	NM_001267843	exon9	c.369delA	p.L123fs	.	.	157.0	49.0	152.0	0.0	.	Pindel
SEC31A	22872	hgsc.bcm.edu	37	4	83785565	83785565	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SEC31A-268	NM_001077207	exon11	c.1385delT	p.I462fs	.	.	108.0	40.0	48.0	0.0	.	Pindel
CLPTM1L	81037	hgsc.bcm.edu	37	5	1339097	1339097	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CLPTM1L-153	NM_030782	exon4	c.G477A	p.P159P	ACTCGTCGGCTTC	.	322.0	160.0	133.0	0.0	.	Atlas-SNP
DROSHA	29102	hgsc.bcm.edu	37	5	31526976	31526976	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	DROSHA-227	NM_013235	exon4	c.C64T	p.R22X	CTCCTCGTCCTCG	.	60.0	12.0	65.0	0.0	.	Atlas-SNP
C1QTNF3	114899	hgsc.bcm.edu	37	5	34043081	34043081	+	Silent	SNP	G	G	A	rs143587337		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	C1QTNF3-90	NM_181435	exon1	c.C150T	p.S50S	GGAGCCGCTACGG	.	167.0	85.0	98.0	0.0	G|1.000;A|0.000	Atlas-SNP
MAP3K1	4214	hgsc.bcm.edu	37	5	56189493	56189493	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MAP3K1-956	NM_005921	exon20	c.C4525T	p.R1509C	GTCTTTCGTACTA	.	233.0	111.0	186.0	0.0	.	Atlas-SNP
ELOVL7	79993	hgsc.bcm.edu	37	5	60067887	60067887	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ELOVL7-90	NM_024930	exon4	c.C98T	p.S33L	AGAGGCGAGGACA	.	262.0	56.0	162.0	0.0	.	Atlas-SNP
ZSWIM6	57688	hgsc.bcm.edu	37	5	60839386	60839386	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_020928	exon14	c.G2890A	p.V964I	ACCATCGTCCGCC	.	230.0	55.0	141.0	0.0	.	Atlas-SNP
NLN	57486	hgsc.bcm.edu	37	5	65118697	65118697	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	NLN-90	NM_020726	exon13	c.C2069A	p.P690Q	GTGAGCCAAACCA	.	168.0	41.0	108.0	0.0	.	Atlas-SNP
GFM2	84340	hgsc.bcm.edu	37	5	74028894	74028894	+	Missense_Mutation	SNP	G	G	A	rs139234343		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	GFM2-90	NM_032380	exon16	c.C1540T	p.R514C	CTTCACGCTGAAG	.	97.0	18.0	77.0	0.0	G|1.000;A|0.000	Atlas-SNP
FNIP1	96459	hgsc.bcm.edu	37	5	131014837	131014837	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	FNIP1-92	NM_133372	exon12	c.C1234T	p.R412X	CAATTCGTGGCAT	.	413.0	220.0	327.0	0.0	.	Atlas-SNP
PHF15	23338	hgsc.bcm.edu	37	5	133896521	133896521	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PHF15-90	NM_015288	exon6	c.T558C	p.I186I	GGCCATTGAGACG	.	437.0	60.0	283.0	0.0	.	Atlas-SNP
PHF15	23338	hgsc.bcm.edu	37	5	133896569	133896569	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PHF15-90	NM_015288	exon6	c.C606T	p.C202C	TGTCTGCGACGTG	.	491.0	248.0	314.0	0.0	.	Atlas-SNP
TRPC7	57113	hgsc.bcm.edu	37	5	135692634	135692634	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_020389	exon2	c.G442A	p.D148N	CGTCGTCGCGCAG	.	162.0	79.0	11.0	0.0	.	Atlas-SNP
PCDHA3	56145	hgsc.bcm.edu	37	5	140181912	140181912	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PCDHA3-98	NM_031497	exon1	c.G1130A	p.R377H	CCGACCGCGACTC	.	451.0	97.0	220.0	0.0	.	Atlas-SNP
PCDHGC4	56098	hgsc.bcm.edu	37	5	140865109	140865109	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PCDHGC4-72	NM_032406	exon1	c.C369T	p.I123I	AGAGATCGTAGAT	.	167.0	10.0	127.0	0.0	.	Atlas-SNP
ARAP3	64411	hgsc.bcm.edu	37	5	141051181	141051181	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ARAP3-291	NM_022481	exon12	c.C1810T	p.R604W	GCTTCCGGAAGAG	.	195.0	86.0	129.0	0.0	.	Atlas-SNP
C1QTNF2	114898	hgsc.bcm.edu	37	5	159781908	159781908	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	C1QTNF2-91	NM_031908	exon2	c.C246G	p.S82R	AGGCAGGCTGCAG	.	33.0	27.0	14.0	0.0	.	Atlas-SNP
NUDCD2	134492	hgsc.bcm.edu	37	5	162886888	162886888	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	NUDCD2-90	NM_145266	exon1	c.G169A	p.G57S	GGCCGCCCACCGA	.	99.0	10.0	17.0	0.0	.	Atlas-SNP
CLTB	1212	hgsc.bcm.edu	37	5	175843341	175843341	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CLTB-90	NM_007097	exon1	c.C24G	p.F8L	CGACGAGAAGAAG	.	192.0	87.0	10.0	0.0	.	Atlas-SNP
CLTB	1212	hgsc.bcm.edu	37	5	175843342	175843342	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CLTB-90	NM_007097	exon1	c.T23C	p.F8S	GACGAGAAGAAGC	.	189.0	86.0	10.0	0.0	.	Atlas-SNP
FGFR4	2264	hgsc.bcm.edu	37	5	176520335	176520335	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	FGFR4-1460	NM_022963	exon8	c.A1060G	p.T354A	ACAGGTACTGGGC	.	151.0	56.0	68.0	0.0	.	Atlas-SNP
NSD1	64324	hgsc.bcm.edu	37	5	176638620	176638620	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	NSD1-188	NM_022455	exon5	c.C3220T	p.R1074C	CGAGAACGTGGAG	.	456.0	35.0	314.0	0.0	.	Atlas-SNP
COL23A1	91522	hgsc.bcm.edu	37	5	177669111	177669111	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	COL23A1-91	NM_173465	exon27	c.G1513A	p.G505S	TCCGGCCGGGGAC	.	156.0	32.0	36.0	0.0	.	Atlas-SNP
RNF130	55819	hgsc.bcm.edu	37	5	179394008	179394008	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	RNF130-227	NM_018434	exon7	c.G948A	p.P316P	CAAATTCGGCTGC	.	126.0	59.0	90.0	0.0	.	Atlas-SNP
RAD50	10111	hgsc.bcm.edu	37	5	131931451	131931452	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	RAD50-229	NM_005732	exon13	c.2156_2157insA	p.L719fs	.	.	67.0	16.0	41.0	0.0	.	Atlas-Indel
WDR55	54853	hgsc.bcm.edu	37	5	140049102	140049102	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	WDR55-91	NM_017706	exon7	c.1014delC	p.R338fs	.	.	440.0	93.0	254.0	0.0	.	Pindel
PXDC1	221749	hgsc.bcm.edu	37	6	3738356	3738356	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_183373	exon2	c.G283A	p.D95N	CTATGTCGTGGGC	.	88.0	82.0	90.0	0.0	.	Atlas-SNP
HIVEP1	3096	hgsc.bcm.edu	37	6	12120284	12120284	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	HIVEP1-139	NM_002114	exon4	c.G256A	p.V86I	TTCGCCGTTCTTC	.	47.0	28.0	40.0	0.0	.	Atlas-SNP
VARS	7407	hgsc.bcm.edu	37	6	31759412	31759412	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	VARS-93	NM_006295	exon8	c.G1075A	p.A359T	GGATGGCGTTGGT	.	144.0	123.0	179.0	0.0	.	Atlas-SNP
C6orf106	64771	hgsc.bcm.edu	37	6	34558353	34558353	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	C6orf106-93	NM_022758	exon4	c.G688A	p.G230S	ACTGGCCGAAGGG	.	76.0	43.0	65.0	0.0	.	Atlas-SNP
SRPK1	6732	hgsc.bcm.edu	37	6	35837637	35837637	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SRPK1-359	NM_003137	exon11	c.C1033T	p.R345C	TATCACGTTCCAT	.	89.0	75.0	153.0	0.0	.	Atlas-SNP
CRISP2	7180	hgsc.bcm.edu	37	6	49660590	49660590	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CRISP2-91	NM_003296	exon10	c.C628A	p.L210I	TTAGGAGATCTTG	.	168.0	156.0	203.0	0.0	.	Atlas-SNP
LMBRD1	55788	hgsc.bcm.edu	37	6	70423650	70423650	+	Missense_Mutation	SNP	C	C	T	rs143758103		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	LMBRD1-91	NM_018368	exon9	c.G802A	p.A268T	TTAAGGCGCGTTT	.	46.0	44.0	105.0	0.0	A|0.000;C|1.000;T|0.000	Atlas-SNP
DPPA5	340168	hgsc.bcm.edu	37	6	74063857	74063857	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	DPPA5-90	NM_001025290	exon1	c.G92A	p.R31Q	AGCAGCCGCGTCT	.	75.0	32.0	79.0	0.0	.	Atlas-SNP
PLAGL1	5325	hgsc.bcm.edu	37	6	144269186	144269186	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PLAGL1-91	NM_001080951	exon7	c.C88T	p.R30W	ACGGCCGCTCCCT	.	274.0	253.0	278.0	2.0	.	Atlas-SNP
AKAP12	9590	hgsc.bcm.edu	37	6	151672365	151672365	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	AKAP12-293	NM_144497	exon2	c.2544delA	p.E848fs	.	.	33.0	27.0	55.0	0.0	.	Atlas-Indel
ELFN1	392617	hgsc.bcm.edu	37	7	1784620	1784620	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_001128636	exon2	c.G388A	p.G130S	CTGCGCGGCCTGG	.	168.0	14.0	33.0	0.0	.	Atlas-SNP
FOXK1	221937	hgsc.bcm.edu	37	7	4799094	4799094	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	FOXK1-516	NM_001037165	exon7	c.G1564A	p.V522I	CCCACCGTCACCA	.	109.0	37.0	17.0	0.0	.	Atlas-SNP
BLVRA	644	hgsc.bcm.edu	37	7	43827548	43827548	+	Missense_Mutation	SNP	G	G	A	rs138715080	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	BLVRA-91	NM_001253823	exon4	c.G58A	p.G20S	CGAGCCGGCTCCG	.	264.0	76.0	221.0	0.0	G|1.000;A|0.000	Atlas-SNP
POLM	27434	hgsc.bcm.edu	37	7	44114081	44114081	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	POLM-229	NM_013284	exon7	c.T884C	p.V295A	GCATCTACATCGG	.	241.0	142.0	21.0	0.0	.	Atlas-SNP
OGDH	4967	hgsc.bcm.edu	37	7	44747186	44747186	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	OGDH-228	NM_002541	exon22	c.G2802A	p.S934S	GCTGTCGCCATTC	.	108.0	66.0	99.0	0.0	.	Atlas-SNP
PION	54103	hgsc.bcm.edu	37	7	76942815	76942815	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PION-514	NM_017439	exon28	c.G2261A	p.R754Q	GGAAGCCGCACAA	.	50.0	21.0	51.0	0.0	.	Atlas-SNP
CACNA2D1	781	hgsc.bcm.edu	37	7	81637024	81637024	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CACNA2D1-96	NM_000722	exon16	c.G1411A	p.G471S	ATTGGCCGGTTAT	.	95.0	34.0	121.0	0.0	.	Atlas-SNP
GRM3	2913	hgsc.bcm.edu	37	7	86415919	86415919	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	GRM3,brain,glioma,0	GRM3-528	NM_000840	exon3	c.G811A	p.V271I	GCGCGCGTCGTGG	.	94.0	35.0	16.0	0.0	.	Atlas-SNP
TECPR1	25851	hgsc.bcm.edu	37	7	97854151	97854151	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TECPR1-91	NM_015395	exon19	c.G2652A	p.T884T	CTGGTCCGTGCCC	.	150.0	47.0	99.0	0.0	.	Atlas-SNP
TRRAP	8295	hgsc.bcm.edu	37	7	98609726	98609726	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TRRAP-923	NM_003496	exon71	c.C11241T	p.D3747D	CCGGGACGAGATC	.	232.0	79.0	183.0	0.0	.	Atlas-SNP
SERPINE1	5054	hgsc.bcm.edu	37	7	100778833	100778833	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SERPINE1-652	NM_000602	exon6	c.G958A	p.D320N	ATGACCGACATGT	.	88.0	5.0	104.0	0.0	.	Atlas-SNP
LRGUK	136332	hgsc.bcm.edu	37	7	133932369	133932369	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	LRGUK-227	NM_144648	exon17	c.G2045A	p.R682H	GGATACGCCCTGA	.	140.0	80.0	126.0	0.0	.	Atlas-SNP
NUP205	23165	hgsc.bcm.edu	37	7	135323345	135323345	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	NUP205-207	NM_015135	exon38	c.T5306C	p.L1769S	TCATGTTACAGAG	.	185.0	36.0	158.0	0.0	.	Atlas-SNP
ATP6V0A4	50617	hgsc.bcm.edu	37	7	138417706	138417706	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ATP6V0A4-91	NM_130840	exon16	c.C1824T	p.H608H	GGGGGCGTGCTGA	.	183.0	65.0	107.0	0.0	.	Atlas-SNP
JHDM1D	80853	hgsc.bcm.edu	37	7	139818942	139818942	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	JHDM1D-91	NM_030647	exon9	c.T1217C	p.V406A	TTGGCTACAAACC	.	69.0	25.0	62.0	0.0	.	Atlas-SNP
GSTK1	373156	hgsc.bcm.edu	37	7	142965205	142965205	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	GSTK1-90	NM_001143681	exon6	c.G430A	p.V144M	ATCACCGTGGCCC	.	108.0	74.0	119.0	0.0	.	Atlas-SNP
ZNF425	155054	hgsc.bcm.edu	37	7	148801944	148801944	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ZNF425-136	NM_001001661	exon4	c.G1019A	p.R340H	TTCAGGCGGAAGC	.	48.0	14.0	31.0	0.0	.	Atlas-SNP
SMARCD3	6604	hgsc.bcm.edu	37	7	150938652	150938652	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SMARCD3-228	NM_003078	exon9	c.C826T	p.Q276X	CATACTGCCACAG	.	202.0	47.0	114.0	0.0	.	Atlas-SNP
HTR5A	3361	hgsc.bcm.edu	37	7	154863297	154863297	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	HTR5A-155	NM_024012	exon1	c.C688T	p.R230C	AAGTTCCGCGTGG	.	261.0	64.0	110.0	0.0	.	Atlas-SNP
RBM33	155435	hgsc.bcm.edu	37	7	155534695	155534695	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	RBM33-23	NM_053043	exon13	c.G2232A	p.S744S	ACCCTCGCGGGCC	.	336.0	81.0	139.0	0.0	.	Atlas-SNP
UBE3C	9690	hgsc.bcm.edu	37	7	157013470	157013470	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	UBE3C-704	NM_014671	exon15	c.G2002A	p.V668M	CTGGACGGTGAGT	.	125.0	15.0	52.0	0.0	.	Atlas-SNP
TNRC18	84629	hgsc.bcm.edu	37	7	5352513	5352515	+	In_Frame_Del	DEL	GAA	GAA	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	GAA	GAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TNRC18-46	NM_001080495	exon27	c.8008_8010del	p.2670_2670del	.	.	55.0	13.0	51.0	0.0	.	Atlas-Indel
RP1L1	94137	hgsc.bcm.edu	37	8	10466464	10466464	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	RP1L1-139	NM_178857	exon4	c.C5144T	p.T1715M	GGGTCCGTGTGGG	.	76.0	23.0	44.0	0.0	.	Atlas-SNP
SORBS3	10174	hgsc.bcm.edu	37	8	22421834	22421834	+	Silent	SNP	G	G	A	rs201952170		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SORBS3-90	NM_005775	exon9	c.G714A	p.T238T	CTGGACGGAAGAG	.	162.0	104.0	128.0	0.0	G|0.999;A|0.000	Atlas-SNP
UNC5D	137970	hgsc.bcm.edu	37	8	35579761	35579761	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	UNC5D-96	NM_080872	exon9	c.C1151T	p.S384L	TGTACTCGGGCTT	.	222.0	148.0	167.0	0.0	.	Atlas-SNP
ANK1	286	hgsc.bcm.edu	37	8	41561586	41561586	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ANK1-716	NM_020475	exon20	c.C2268T	p.N756N	AGCACCGTTTTTC	.	99.0	59.0	114.0	0.0	.	Atlas-SNP
OPRK1	4986	hgsc.bcm.edu	37	8	54147371	54147371	+	Silent	SNP	C	C	T	rs200269505		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	OPRK1,arm,malignant_melanoma,-1	OPRK1-70	NM_000912	exon3	c.G558A	p.S186S	AGATGACGACAGC	.	216.0	69.0	185.0	1.0	.	Atlas-SNP
ZFPM2	23414	hgsc.bcm.edu	37	8	106814998	106814998	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ZFPM2-139	NM_012082	exon8	c.G2688A	p.P896P	GTTTCCGAATCCA	.	55.0	10.0	46.0	0.0	.	Atlas-SNP
SYBU	55638	hgsc.bcm.edu	37	8	110587864	110587864	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SYBU-227	NM_001099746	exon6	c.G906A	p.T302T	TTCCCCCGTGACC	.	109.0	34.0	129.0	0.0	.	Atlas-SNP
FAM135B	51059	hgsc.bcm.edu	37	8	139278014	139278014	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	FAM135B-31	NM_015912	exon4	c.C229T	p.R77W	CATTCCGGTATAA	.	135.0	9.0	104.0	0.0	.	Atlas-SNP
GPR20	2843	hgsc.bcm.edu	37	8	142367290	142367290	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	GPR20-91	NM_005293	exon2	c.C734T	p.T245M	AGCACCGTGAGCA	.	43.0	29.0	6.0	0.0	.	Atlas-SNP
MROH6	642475	hgsc.bcm.edu	37	8	144653155	144653155	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_001100878	exon4	c.C612T	p.A204A	GAGCTCGGCTGCT	.	97.0	9.0	69.0	0.0	.	Atlas-SNP
EPPK1	83481	hgsc.bcm.edu	37	8	144940290	144940290	+	Missense_Mutation	SNP	C	C	G	rs201976887		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	EPPK1-25	NM_031308	exon1	c.G7132C	p.D2378H	TGGGGTCGGCCAG	.	284.0	35.0	63.0	0.0	.	Atlas-SNP
SPATC1	375686	hgsc.bcm.edu	37	8	145094825	145094825	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SPATC1-91	NM_001134374	exon2	c.C227T	p.P76L	TGCCCCCGTCCCC	.	107.0	26.0	70.0	0.0	.	Atlas-SNP
CPSF1	29894	hgsc.bcm.edu	37	8	145620718	145620718	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CPSF1-91	NM_013291	exon27	c.C3028A	p.P1010T	GCCATGGGGCATC	.	222.0	75.0	108.0	0.0	.	Atlas-SNP
KIFC2	90990	hgsc.bcm.edu	37	8	145697835	145697835	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	KIFC2-92	NM_145754	exon15	c.T1699C	p.W567R	ACCCACTGGGACG	.	135.0	82.0	7.0	0.0	.	Atlas-SNP
RECQL4	9401	hgsc.bcm.edu	37	8	145736909	145736909	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	RECQL4-1083	NM_004260	exon22	c.G3532A	p.G1178R	CCTGCCCGTACAC	.	182.0	40.0	86.0	0.0	.	Atlas-SNP
PHF20L1	51105	hgsc.bcm.edu	37	8	133823330	133823330	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PHF20L1-92	NM_016018	exon9	c.886delG	p.E296fs	.	.	71.0	43.0	82.0	0.0	.	Atlas-Indel
BOP1	23246	hgsc.bcm.edu	37	8	145512978	145512979	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	BOP1-90	NM_015201	exon2	c.107_108insC	p.L36fs	.	.	118.0	31.0	94.0	0.0	.	Atlas-Indel
ESRP1	54845	hgsc.bcm.edu	37	8	95686611	95686611	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ESRP1-94	NM_017697	exon12	c.1527delT	p.H509fs	.	.	262.0	93.0	266.0	0.0	.	Pindel
KANK1	23189	hgsc.bcm.edu	37	9	712006	712006	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	KANK1-517	NM_153186	exon2	c.G766A	p.V256M	ATCGTCGTGTACC	.	321.0	24.0	205.0	0.0	.	Atlas-SNP
KANK1	23189	hgsc.bcm.edu	37	9	738458	738458	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	KANK1-517	NM_153186	exon7	c.C3033T	p.S1011S	TTACAGCGTGTCC	.	274.0	58.0	206.0	0.0	.	Atlas-SNP
VLDLR	7436	hgsc.bcm.edu	37	9	2643347	2643347	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	VLDLR-516	NM_001018056	exon5	c.C636T	p.C212C	GGTATGCGACGAT	.	293.0	75.0	165.0	0.0	.	Atlas-SNP
ANKRD18B	441459	hgsc.bcm.edu	37	9	33572324	33572324	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_001244752	exon16	c.G2999A	p.R1000H	TGCTGCGTTGGGC	.	266.0	51.0	238.0	0.0	.	Atlas-SNP
KIF24	347240	hgsc.bcm.edu	37	9	34306372	34306372	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	KIF24-22	NM_194313	exon3	c.C691T	p.R231C	GGGGGCGTTTTCG	.	93.0	85.0	114.0	1.0	.	Atlas-SNP
TLN1	7094	hgsc.bcm.edu	37	9	35715145	35715145	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TLN1-609	NM_006289	exon21	c.C2665T	p.R889W	GCAGCCGCTGCTG	.	91.0	5.0	25.0	0.0	.	Atlas-SNP
TMEM8B	51754	hgsc.bcm.edu	37	9	35853771	35853771	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TMEM8B-91	NM_001042590	exon13	c.C1353T	p.N451N	CATCAACGAGCAG	.	43.0	37.0	13.0	0.0	.	Atlas-SNP
GRHPR	9380	hgsc.bcm.edu	37	9	37428531	37428531	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	GRHPR-90	NM_012203	exon5	c.C455T	p.T152M	GACTCACGCAGAG	.	123.0	115.0	30.0	0.0	.	Atlas-SNP
TJP2	9414	hgsc.bcm.edu	37	9	71861604	71861604	+	Splice_Site	SNP	A	A	G	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TJP2-115	NM_001170414	exon19	c.2498-2A>G	.	TTCTATAGCTACA	.	94.0	94.0	80.0	0.0	.	Atlas-SNP
VPS13A	23230	hgsc.bcm.edu	37	9	79933230	79933230	+	Missense_Mutation	SNP	C	C	T	rs144009026		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	VPS13A-161	NM_001018037	exon40	c.C4919T	p.T1640M	AAGAAACGGCTTC	.	123.0	113.0	104.0	0.0	C|1.000;T|0.000	Atlas-SNP
WNK2	65268	hgsc.bcm.edu	37	9	96021245	96021245	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	WNK2-765	NM_006648	exon11	c.G2415A	p.T805T	CATCACGCCCCTG	.	288.0	37.0	83.0	0.0	.	Atlas-SNP
EPB41L4B	54566	hgsc.bcm.edu	37	9	112042162	112042162	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	EPB41L4B-92	NM_018424	exon2	c.T346C	p.Y116H	AGTGGTACACAAT	.	134.0	32.0	94.0	0.0	.	Atlas-SNP
C9orf43	257169	hgsc.bcm.edu	37	9	116176059	116176059	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	C9orf43-90	NM_152786	exon3	c.G172A	p.V58M	CTCACCGTGGTAG	.	164.0	155.0	119.0	0.0	.	Atlas-SNP
RGS3	5998	hgsc.bcm.edu	37	9	116269824	116269824	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	RGS3-227	NM_144488	exon14	c.G1343A	p.R448H	CCAAGCGCGGGGG	.	170.0	25.0	8.0	0.0	.	Atlas-SNP
DFNB31	25861	hgsc.bcm.edu	37	9	117166245	117166245	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	DFNB31-95	NM_015404	exon10	c.G2349A	p.V783V	GGTGGACACCGAC	.	79.0	4.0	31.0	0.0	.	Atlas-SNP
RABGAP1	23637	hgsc.bcm.edu	37	9	125861009	125861009	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	RABGAP1-500	NM_012197	exon23	c.C2749T	p.R917C	ATGTGCCGTCGGG	.	97.0	30.0	70.0	0.0	.	Atlas-SNP
FIBCD1	84929	hgsc.bcm.edu	37	9	133799257	133799257	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	FIBCD1-90	NM_001145106	exon5	c.C723T	p.P241P	GTCTCGGGGCCGG	.	331.0	308.0	34.0	0.0	.	Atlas-SNP
SDCCAG3	10807	hgsc.bcm.edu	37	9	139299638	139299638	+	Missense_Mutation	SNP	G	G	A	rs200655256		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SDCCAG3-90	NM_001039707	exon7	c.C910T	p.R304W	ACTTCCGCTCAAG	.	118.0	112.0	80.0	0.0	G|0.999;A|0.000	Atlas-SNP
MAMDC4	158056	hgsc.bcm.edu	37	9	139748110	139748110	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MAMDC4-156	NM_206920	exon4	c.G442A	p.A148T	TACCACGCGGCCT	.	136.0	131.0	7.0	0.0	.	Atlas-SNP
PNPLA7	375775	hgsc.bcm.edu	37	9	140373513	140373513	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PNPLA7-91	NM_152286	exon23	c.A2683G	p.K895E	CCAGCTTGGGCAG	.	308.0	49.0	47.0	0.0	.	Atlas-SNP
NCBP1	4686	hgsc.bcm.edu	37	9	100409836	100409838	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	AAG	AAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	NCBP1-90	NM_002486	exon7	c.673_675del	p.225_225del	.	.	71.0	53.0	81.0	0.0	.	Pindel
TEX11	56159	hgsc.bcm.edu	37	X	69902635	69902635	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TEX11-178	NM_001003811	exon15	c.C1090T	p.R364C	TAAAACGTTCATG	.	111.0	46.0	88.0	0.0	.	Atlas-SNP
KIAA2022	340533	hgsc.bcm.edu	37	X	73961524	73961524	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	KIAA2022-183	NM_001008537	exon3	c.C2868T	p.T956T	GAGTTGGGTATCT	.	137.0	13.0	92.0	0.0	.	Atlas-SNP
PRPS1	5631	hgsc.bcm.edu	37	X	106890920	106890920	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PRPS1-289	NM_002764	exon6	c.C789T	p.N263N	CAACAACGCATGC	.	216.0	103.0	167.0	0.0	.	Atlas-SNP
HTR2C	3358	hgsc.bcm.edu	37	X	114141204	114141204	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	HTR2C-133	NM_001256761	exon6	c.C508T	p.R170C	GGTGTTCGTGAAC	.	251.0	90.0	186.0	0.0	.	Atlas-SNP
ATP1B4	23439	hgsc.bcm.edu	37	X	119512613	119512613	+	Silent	SNP	C	C	T	rs148650396		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ATP1B4-131	NM_001142447	exon7	c.C897T	p.Y299Y	TTACTACGGCAAA	.	95.0	11.0	59.0	0.0	C|1.000;T|0.000	Atlas-SNP
MAP7D3	79649	hgsc.bcm.edu	37	X	135323411	135323411	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MAP7D3-110	NM_001173517	exon5	c.G443A	p.R148H	AAAGTACGATAAA	.	105.0	41.0	72.0	0.0	.	Atlas-SNP
ATP2B3	492	hgsc.bcm.edu	37	X	152807870	152807870	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ATP2B3-109	NM_021949	exon4	c.C754T	p.R252C	CACGTGCGCAAGT	.	208.0	84.0	38.0	0.0	.	Atlas-SNP
PLXNB3	5365	hgsc.bcm.edu	37	X	153042767	153042767	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PLXNB3-130	NM_001163257	exon31	c.C5101T	p.R1701W	AGCCTGCGGGAGC	.	198.0	85.0	15.0	0.0	.	Atlas-SNP
PDZD4	57595	hgsc.bcm.edu	37	X	153073942	153073942	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PDZD4-193	NM_032512	exon2	c.C169T	p.R57W	CCCCCCGGAGGCG	.	218.0	112.0	53.0	0.0	.	Atlas-SNP
ASMTL	8623	hgsc.bcm.edu	37	X	1522202	1522202	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ASMTL-62	NM_001173474	exon12	c.1779delT	p.G593fs	.	.	292.0	125.0	174.0	0.0	.	Atlas-Indel
UBQLN2	29978	hgsc.bcm.edu	37	X	56591874	56591874	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	UBQLN2-131	NM_013444	exon1	c.1567delG	p.A523fs	.	.	56.0	48.0	21.0	0.0	.	Atlas-Indel
CAPN6	827	hgsc.bcm.edu	37	X	110496401	110496402	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CAPN6-195	NM_014289	exon4	c.341_342insA	p.T114fs	.	.	54.0	49.0	63.0	0.0	.	Atlas-Indel
AGTR2	186	hgsc.bcm.edu	37	X	115303928	115303928	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	AGTR2-565	NM_000686	exon3	c.394delA	p.I132fs	.	.	72.0	59.0	52.0	0.0	.	Atlas-Indel
NKAP	79576	hgsc.bcm.edu	37	X	119059239	119059239	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	NKAP-132	NM_024528	exon9	c.1193delT	p.L398fs	.	.	87.0	82.0	60.0	0.0	.	Atlas-Indel
BCORL1	63035	hgsc.bcm.edu	37	X	129149050	129149050	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	BCORL1-294	NM_021946	exon3	c.2301delC	p.G767fs	.	.	148.0	70.0	105.0	0.0	.	Pindel
