Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Algorithm
PCDH15	65217	hgsc.bcm.edu	37	10	55582281	55582281	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	PCDH15-193	NM_001142767	exon31	c.C5085T	p.A1695A	TGGATGGGCAAAA	.	45.0	10.0	49.0	0.0	.	Atlas-SNP
PTPRE	5791	hgsc.bcm.edu	37	10	129839226	129839226	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	PTPRE-227	NM_006504	exon3	c.C81T	p.A27A	CACTGCCGACAGC	.	168.0	9.0	183.0	0.0	.	Atlas-SNP
CTSD	1509	hgsc.bcm.edu	37	11	1778638	1778638	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	CTSD-90	NM_001909	exon5	c.C620T	p.S207F	TTGACGGAGATGC	.	251.0	25.0	146.0	0.0	.	Atlas-SNP
EFCAB4B	84766	hgsc.bcm.edu	37	12	3805999	3805999	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	EFCAB4B-92	NM_032680	exon4	c.A167T	p.Q56L	AACTCCTGTGCCT	.	138.0	33.0	103.0	0.0	.	Atlas-SNP
BCAT1	586	hgsc.bcm.edu	37	12	24989464	24989464	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	BCAT1-522	NM_001178092	exon6	c.T701C	p.L234P	AGGTCCAGAATGC	.	88.0	15.0	66.0	0.0	.	Atlas-SNP
GTSF1	121355	hgsc.bcm.edu	37	12	54854183	54854183	+	Silent	SNP	C	C	A	rs148431190	alternate_allele	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	GTSF1-90	NM_144594	exon7	c.G465T	p.P155P	AACATACGGCAGA	.	146.0	29.0	83.0	0.0	C|1.000;T|0.000	Atlas-SNP
NAP1L1	4673	hgsc.bcm.edu	37	12	76447086	76447086	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	NAP1L1-92	NM_004537	exon10	c.C815G	p.T272S	TTAATAGTTTTCA	.	189.0	11.0	135.0	0.0	.	Atlas-SNP
NCOR2	9612	hgsc.bcm.edu	37	12	124887093	124887093	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	NCOR2-229	NM_006312	exon16	c.G1497A	p.Q499Q	CTGCTGCTGTTGT	.	52.0	4.0	28.0	0.0	.	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	37	14	105417098	105417098	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	AHNAK2-47	NM_138420	exon7	c.G4690A	p.G1564S	CAGGGCCCTCTGG	.	159.0	48.0	157.0	0.0	.	Atlas-SNP
PKD1L2	114780	hgsc.bcm.edu	37	16	81232405	81232405	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	PKD1L2-92	NM_001076780	exon7	c.T1405C	p.L469L	TGATCAATAGGTC	.	174.0	50.0	147.0	0.0	.	Atlas-SNP
SALL1	6299	hgsc.bcm.edu	37	16	51175655	51175656	+	In_Frame_Ins	INS	-	-	GCTGCT	rs113614842	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	SALL1-98	NM_002968	exon2	c.478_479insAGCAGC	p.G160delinsSSG	.	.	94.0	17.0	35.0	0.0	-|0.500;GCC|0.250;GCT|0.250	Atlas-Indel
G6PC3	92579	hgsc.bcm.edu	37	17	42153148	42153148	+	Missense_Mutation	SNP	G	G	A	rs200478425	alternate_allele	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	G6PC3-91	NM_138387	exon6	c.G778A	p.G260S	GCCCTGGGCCTGG	.	80.0	18.0	51.0	0.0	.	Atlas-SNP
ZNF521	25925	hgsc.bcm.edu	37	18	22807146	22807146	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	ZNF521-275	NM_015461	exon4	c.C736G	p.Q246E	ACTTCTGAGTGTC	.	108.0	6.0	136.0	0.0	.	Atlas-SNP
MEGF8	1954	hgsc.bcm.edu	37	19	42841342	42841342	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	MEGF8-23	NM_001271938	exon8	c.G1497A	p.P499P	TGCCCCGCCAGGA	.	122.0	27.0	82.0	0.0	.	Atlas-SNP
ZNF813	126017	hgsc.bcm.edu	37	19	53994970	53994970	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	ZNF813-67	NM_001004301	exon4	c.A1484G	p.Y495C	AACCTTACAAGTG	.	230.0	42.0	184.0	0.0	.	Atlas-SNP
PLEKHG5	57449	hgsc.bcm.edu	37	1	6529191	6529191	+	Silent	SNP	C	C	T	rs149732859	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	PLEKHG5-652	NM_001042664	exon19	c.G2160A	p.E720E	CTCCTCCTCCTCC	.	49.0	5.0	29.0	0.0	C|0.981;T|0.019	Atlas-SNP
TRIM58	25893	hgsc.bcm.edu	37	1	248039251	248039251	+	Silent	SNP	C	C	T	rs201527424	alternate_allele	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	TRIM58-96	NM_015431	exon6	c.C921T	p.T307T	CTTGACCGCCGAC	.	126.0	35.0	94.0	0.0	C|1.000;G|0.000	Atlas-SNP
AHDC1	27245	hgsc.bcm.edu	37	1	27875518	27875520	+	In_Frame_Del	DEL	AGG	AGG	-	rs111827498	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	AGG	AGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	AHDC1-90	NM_001029882	exon6	c.3108_3110del	p.1036_1037del	.	.	48.0	13.0	6.0	0.0	AGG|0.979;-|0.021	Pindel
RALY	22913	hgsc.bcm.edu	37	20	32664865	32664866	+	In_Frame_Ins	INS	-	-	AGC	rs57852506	bycluster	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	RALY-91	NM_016732	exon8	c.690_691insAGC	p.A230delinsAS	.	.	31.0	11.0	13.0	0.0	-|0.167;AGC|0.833	Pindel
SH3RF3	344558	hgsc.bcm.edu	37	2	110053528	110053528	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	SH3RF3-24	NM_001099289	exon7	c.C1754G	p.S585W	CAGCCTCGCCCCC	.	259.0	53.0	26.0	0.0	.	Atlas-SNP
TMEM177	80775	hgsc.bcm.edu	37	2	120439176	120439176	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	TMEM177-91	NM_001105199	exon2	c.C747G	p.F249L	GGAGTTCTATGAG	.	170.0	30.0	132.0	0.0	.	Atlas-SNP
MUC13	56667	hgsc.bcm.edu	37	3	124629329	124629329	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	MUC13-90	NM_033049	exon10	c.A1267G	p.T423A	CAATAGTGAGGAT	.	143.0	35.0	226.0	0.0	.	Atlas-SNP
RAB43	339122	hgsc.bcm.edu	37	3	128840321	128840321	+	Silent	SNP	C	C	T	rs76233276	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	RAB43-369	NM_001204885	exon2	c.G12A	p.P4P	TGGGCCCGGCCCT	.	41.0	7.0	7.0	0.0	C|0.954;T|0.046	Atlas-SNP
ADAMTS3	9508	hgsc.bcm.edu	37	4	73280551	73280551	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	ADAMTS3-651	NM_014243	exon4	c.C642G	p.S214S	GTCTTTGGACATG	.	97.0	17.0	98.0	0.0	.	Atlas-SNP
ANAPC10	10393	hgsc.bcm.edu	37	4	145916557	145916557	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	ANAPC10-650	NM_001256707	exon6	c.A526G	p.I176V	AATCTATAGTTGT	.	47.0	12.0	59.0	0.0	.	Atlas-SNP
C5orf38	153571	hgsc.bcm.edu	37	5	2752393	2752393	+	Silent	SNP	G	G	C	rs185444055		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	C5orf38-226	NM_178569	exon1	c.G15C	p.A5A	GCCCGCGGCTCGG	.	67.0	37.0	6.0	0.0	G|0.990;C|0.010	Atlas-SNP
ADAMTS19	171019	hgsc.bcm.edu	37	5	128864313	128864313	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	ADAMTS19-295	NM_133638	exon6	c.T1253A	p.M418K	TAGAGATGTCAAC	.	173.0	30.0	143.0	0.0	.	Atlas-SNP
GLRA1	2741	hgsc.bcm.edu	37	5	151231120	151231120	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	GLRA1-91	NM_000171	exon7	c.T743A	p.M248K	TAACCCATCTGCC	.	264.0	60.0	173.0	0.0	.	Atlas-SNP
HIST1H1E	3008	hgsc.bcm.edu	37	6	26157045	26157045	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	HIST1H1E-154	NM_005321	exon1	c.G427T	p.G143W	GCGACGGGGGCGG	.	138.0	37.0	51.0	0.0	.	Atlas-SNP
HLA-A	3105	hgsc.bcm.edu	37	6	29910699	29910699	+	Missense_Mutation	SNP	G	G	A	rs1059451		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	HLA-A-92	NM_002116	exon2	c.G239A	p.G80E	AGGAGGGGCCGGA	.	528.0	29.0	130.0	0.0	G|0.999;A|0.001	Atlas-SNP
POLR1C	9533	hgsc.bcm.edu	37	6	43485110	43485110	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	POLR1C-90	NM_203290	exon2	c.G136A	p.E46K	CGCTTCGAGAAGG	.	154.0	8.0	87.0	0.0	.	Atlas-SNP
IGF2R	3482	hgsc.bcm.edu	37	6	160453715	160453715	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	IGF2R-118	NM_000876	exon8	c.A1015G	p.I339V	GTCTCCATAGACC	.	119.0	18.0	52.0	0.0	.	Atlas-SNP
LRRN3	54674	hgsc.bcm.edu	37	7	110764308	110764308	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	LRRN3-154	NM_018334	exon2	c.T1480C	p.Y494H	GGTTTATATACTT	.	196.0	35.0	162.0	0.0	.	Atlas-SNP
CAPZA2	830	hgsc.bcm.edu	37	7	116557779	116557779	+	Splice_Site	SNP	A	A	G	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	CAPZA2-514	NM_006136	exon10	c.721-2A>G	.	TTTCATAGACTGC	.	116.0	26.0	75.0	0.0	.	Atlas-SNP
ASPH	444	hgsc.bcm.edu	37	8	62596612	62596612	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	ASPH-93	NM_001164753	exon2	c.A152G	p.Y51C	TCCTCATAGTCAA	.	54.0	10.0	37.0	0.0	.	Atlas-SNP
CNBD1	168975	hgsc.bcm.edu	37	8	87917323	87917323	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	CNBD1-3	NM_173538	exon3	c.A173G	p.N58S	TGAGCAATATCTT	.	69.0	17.0	68.0	0.0	.	Atlas-SNP
EPPK1	83481	hgsc.bcm.edu	37	8	144940427	144940427	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	EPPK1-25	NM_031308	exon1	c.G6995A	p.R2332Q	TGCTCCCGGACGA	.	202.0	17.0	32.0	0.0	.	Atlas-SNP
C9orf171	389799	hgsc.bcm.edu	37	9	135447854	135447854	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	C9orf171-157	NM_207417	exon7	c.T920C	p.V307A	GTGCCGTGCGCCA	.	43.0	15.0	33.0	0.0	.	Atlas-SNP
CDKL5	6792	hgsc.bcm.edu	37	X	18631388	18631388	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	CDKL5-838	NM_003159	exon15	c.G2269T	p.D757Y	GCATTCGATCCAT	.	253.0	43.0	259.0	0.0	.	Atlas-SNP
SH3KBP1	30011	hgsc.bcm.edu	37	X	19587243	19587243	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	SH3KBP1-130	NM_001024666	exon12	c.C1251T	p.L417L	GTCCGAGAGATCT	.	142.0	33.0	109.0	0.0	.	Atlas-SNP
