Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Algorithm
NRAP	4892	hgsc.bcm.edu	37	10	115364490	115364490	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	NRAP-522	NM_198060	exon35	c.G4105T	p.A1369S	TCTTGGCATGGAC	.	102.0	14.0	113.0	0.0	.	Atlas-SNP
JAKMIP3	282973	hgsc.bcm.edu	37	10	133930934	133930934	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	JAKMIP3-23	NM_001105521	exon2	c.C489T	p.G163G	CAAGGGCGCCAAA	.	206.0	127.0	198.0	1.0	.	Atlas-SNP
MRGPRE	116534	hgsc.bcm.edu	37	11	3249197	3249197	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	MRGPRE-136	NM_001039165	exon2	c.G833A	p.R278H	AGCCTGCGGCCCT	.	76.0	6.0	23.0	0.0	.	Atlas-SNP
LDHC	3948	hgsc.bcm.edu	37	11	18451364	18451364	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	LDHC-226	NM_002301	exon4	c.C325T	p.L109L	CTTGCCCTGGTCC	.	87.0	7.0	97.0	0.0	.	Atlas-SNP
OR1S2	219958	hgsc.bcm.edu	37	11	57970736	57970736	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	OR1S2-69	NM_001004459	exon1	c.G918T	p.R306S	CTTATTCCTCAAG	.	184.0	51.0	201.0	0.0	.	Atlas-SNP
FAT3	120114	hgsc.bcm.edu	37	11	92532969	92532969	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	FAT3-73	NM_001008781	exon9	c.C6790A	p.L2264I	GACGCCCTTACTG	.	136.0	19.0	158.0	0.0	.	Atlas-SNP
ZNF384	171017	hgsc.bcm.edu	37	12	6777081	6777081	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	ZNF384-1083	NM_001135734	exon11	c.G1533A	p.Q511Q	CTGCTGCTGCTGC	.	61.0	6.0	20.0	0.0	.	Atlas-SNP
TMEM132D	121256	hgsc.bcm.edu	37	12	129558465	129558465	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	TMEM132D-106	NM_133448	exon9	c.C3255A	p.C1085X	CTCTTTGCAGTCC	.	188.0	77.0	134.0	0.0	.	Atlas-SNP
SSTR1	6751	hgsc.bcm.edu	37	14	38679240	38679240	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	SSTR1-947	NM_001049	exon3	c.G646A	p.A216T	GAGCCCGCTCAAC	.	97.0	11.0	116.0	0.0	.	Atlas-SNP
TRIM9	114088	hgsc.bcm.edu	37	14	51492067	51492067	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	TRIM9-227	NM_052978	exon2	c.C834A	p.S278S	CGCCTGGGAGAGC	.	60.0	4.0	73.0	0.0	.	Atlas-SNP
FOXN3	1112	hgsc.bcm.edu	37	14	89817135	89817135	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	FOXN3-229	NM_001085471	exon3	c.G561C	p.S187S	CCACAACGACCCT	.	85.0	32.0	90.0	0.0	.	Atlas-SNP
CCDC88C	440193	hgsc.bcm.edu	37	14	91739504	91739504	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	CCDC88C-25	NM_001080414	exon30	c.C5552T	p.P1851L	GAGCTGGGGGGTG	.	44.0	7.0	40.0	0.0	.	Atlas-SNP
BEGAIN	57596	hgsc.bcm.edu	37	14	101011366	101011366	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	BEGAIN-68	NM_001159531	exon3	c.C214T	p.Q72X	GCTCCTGGTTGAT	.	58.0	12.0	60.0	0.0	.	Atlas-SNP
RYR3	6263	hgsc.bcm.edu	37	15	33962729	33962729	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	RYR3-520	NM_001243996	exon38	c.G5832T	p.Q1944H	GGAGCAGCCGACG	.	77.0	12.0	79.0	0.0	.	Atlas-SNP
PLA2G4E	123745	hgsc.bcm.edu	37	15	42297141	42297141	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	.	NM_001206670	exon5	c.G561T	p.E187D	CCTCTCCTCCAGC	.	149.0	12.0	159.0	0.0	.	Atlas-SNP
SLC30A4	7782	hgsc.bcm.edu	37	15	45814279	45814279	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	SLC30A4-90	NM_013309	exon2	c.G274C	p.V92L	AGTCCACCTTCAA	.	175.0	106.0	166.0	1.0	.	Atlas-SNP
DMXL2	23312	hgsc.bcm.edu	37	15	51755647	51755647	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	DMXL2-99	NM_015263	exon33	c.C7852T	p.L2618F	TAACAAGGAAATG	.	153.0	101.0	124.0	0.0	.	Atlas-SNP
CHD2	1106	hgsc.bcm.edu	37	15	93522377	93522377	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	CHD2-229	NM_001271	exon22	c.C2740T	p.R914C	ATTTACCGCTTAG	.	57.0	6.0	57.0	0.0	.	Atlas-SNP
CHD9	80205	hgsc.bcm.edu	37	16	53326859	53326859	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	CHD9-272	NM_025134	exon29	c.A5405G	p.Q1802R	AAATTCAGCAGAT	.	152.0	20.0	170.0	0.0	.	Atlas-SNP
TANGO6	79613	hgsc.bcm.edu	37	16	69007975	69007975	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	.	NM_024562	exon15	c.G2746T	p.D916Y	TTGCCGGACTTGT	.	182.0	116.0	181.0	1.0	.	Atlas-SNP
CMC2	56942	hgsc.bcm.edu	37	16	81015457	81015457	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	.	NM_020188	exon3	c.A107G	p.Y36C	TTACAATAACCAA	.	86.0	14.0	80.0	0.0	.	Atlas-SNP
SGSM2	9905	hgsc.bcm.edu	37	17	2280076	2280076	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	SGSM2-68	NM_001098509	exon19	c.C2524A	p.L842M	TGCGATCTGCTGG	.	101.0	10.0	78.0	0.0	.	Atlas-SNP
SGSM2	9905	hgsc.bcm.edu	37	17	2280078	2280078	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	SGSM2-68	NM_001098509	exon19	c.G2526T	p.L842L	CGATCTGCTGGCG	.	101.0	10.0	76.0	0.0	.	Atlas-SNP
TP53	7157	hgsc.bcm.edu	37	17	7579312	7579312	+	Silent	SNP	C	C	A	rs55863639		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	TP53,mouth,carcinoma,-1	TP53-70225	NM_001126114	exon4	c.G375T	p.T125T	ACTGACCGTGCAA	.	193.0	118.0	141.0	0.0	.	Atlas-SNP
WDR16	146845	hgsc.bcm.edu	37	17	9542007	9542007	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	WDR16-71	NM_145054	exon12	c.C1554A	p.I518I	GATCATCACCAGC	.	110.0	69.0	106.0	0.0	.	Atlas-SNP
KRT17	3872	hgsc.bcm.edu	37	17	39780559	39780559	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	KRT17-92	NM_000422	exon1	c.G203T	p.G68V	CCATAGCCACCAC	.	343.0	39.0	215.0	0.0	.	Atlas-SNP
ABCC3	8714	hgsc.bcm.edu	37	17	48746781	48746781	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	ABCC3-93	NM_003786	exon17	c.C2133A	p.F711L	GCTTTTCGGCAAA	.	141.0	12.0	105.0	0.0	.	Atlas-SNP
APPBP2	10513	hgsc.bcm.edu	37	17	58525008	58525008	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	APPBP2-226	NM_006380	exon13	c.C1692T	p.P564P	GGACTGGGGGCTG	.	150.0	18.0	102.0	0.0	.	Atlas-SNP
EVPL	2125	hgsc.bcm.edu	37	17	74003739	74003739	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	EVPL-93	NM_001988	exon22	c.G5547T	p.M1849I	GTCCAGCATGTTC	.	81.0	22.0	79.0	0.0	.	Atlas-SNP
GREB1L	80000	hgsc.bcm.edu	37	18	19053018	19053018	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	.	NM_001142966	exon16	c.G2209T	p.E737X	CTGGAGGAAAATG	.	184.0	50.0	143.0	0.0	.	Atlas-SNP
ZNF236	7776	hgsc.bcm.edu	37	18	74637402	74637402	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	ZNF236-94	NM_007345	exon22	c.G3913C	p.D1305H	TCTACTGACCCAA	.	160.0	19.0	143.0	0.0	.	Atlas-SNP
HSPBP1	23640	hgsc.bcm.edu	37	19	55785775	55785775	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	HSPBP1-90	NM_012267	exon4	c.G631T	p.A211S	AGATGGCGAAGAG	.	37.0	20.0	13.0	0.0	.	Atlas-SNP
ATP5F1	515	hgsc.bcm.edu	37	1	111999313	111999313	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	ATP5F1-90	NM_001688	exon5	c.T449C	p.I150T	ATGCAATTGATAC	.	342.0	208.0	355.0	2.0	.	Atlas-SNP
TRIM33	51592	hgsc.bcm.edu	37	1	114948141	114948141	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	TRIM33-1351	NM_015906	exon15	c.G2659T	p.E887X	AGTCTTCATTTGG	.	116.0	77.0	120.0	0.0	.	Atlas-SNP
SPRR3	6707	hgsc.bcm.edu	37	1	152975739	152975739	+	Silent	SNP	T	T	A	rs17851565	byfrequency	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	SPRR3-45	NM_001097589	exon2	c.T243A	p.G81G	GCCAGGTTGTACC	.	109.0	22.0	125.0	0.0	A|0.010;C|0.001;T|0.988	Atlas-SNP
HHIPL2	79802	hgsc.bcm.edu	37	1	222713605	222713605	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	HHIPL2-69	NM_024746	exon4	c.G1197T	p.S399S	ATTGTCCGAGGGG	.	100.0	11.0	118.0	0.0	.	Atlas-SNP
OBSCN	84033	hgsc.bcm.edu	37	1	228505189	228505189	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	OBSCN-403	NM_001271223	exon63	c.C16457G	p.A5486G	AGGATGCTGAGGT	.	107.0	19.0	114.0	0.0	.	Atlas-SNP
SIPA1L2	57568	hgsc.bcm.edu	37	1	232615375	232615375	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	SIPA1L2-95	NM_020808	exon5	c.C2083A	p.Q695K	ATACCTGTTGTCT	.	176.0	14.0	156.0	0.0	.	Atlas-SNP
RBM12	10137	hgsc.bcm.edu	37	20	34241123	34241123	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	RBM12-93	NM_152838	exon3	c.C2122A	p.L708M	CAGTCAGGAAGGC	.	83.0	7.0	83.0	0.0	.	Atlas-SNP
CDH22	64405	hgsc.bcm.edu	37	20	44803312	44803312	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	CDH22-95	NM_021248	exon12	c.G2320A	p.A774T	CGAAGGCGTAGGT	.	108.0	13.0	24.0	0.0	.	Atlas-SNP
LAMA5	3911	hgsc.bcm.edu	37	20	60900600	60900600	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	LAMA5-93	NM_005560	exon41	c.G5301T	p.G1767G	GAAGTTCCCCTGT	.	197.0	42.0	166.0	0.0	.	Atlas-SNP
NEFH	4744	hgsc.bcm.edu	37	22	29885594	29885594	+	Silent	SNP	A	A	T	rs79235463	byfrequency	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	NEFH-90	NM_021076	exon4	c.A1965T	p.P655P	GTCCCCAGAGAAG	.	195.0	47.0	223.0	0.0	A|0.500;T|0.500	Atlas-SNP
ALK	238	hgsc.bcm.edu	37	2	29754831	29754831	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	ALK-3833	NM_004304	exon4	c.C1104T	p.H368H	CTCGTTGTGGGGC	.	158.0	19.0	160.0	0.0	.	Atlas-SNP
AMER3	205147	hgsc.bcm.edu	37	2	131519854	131519854	+	Missense_Mutation	SNP	C	C	T	rs200636300		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	.	NM_001105195	exon2	c.C209T	p.A70V	AAGGGGCGCAGCT	.	75.0	45.0	84.0	0.0	.	Atlas-SNP
NEB	4703	hgsc.bcm.edu	37	2	152484133	152484133	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	NEB-145	NM_001164507	exon69	c.C10047A	p.S3349R	CACATCGCTGACT	.	373.0	32.0	304.0	0.0	.	Atlas-SNP
KCNH7	90134	hgsc.bcm.edu	37	2	163693261	163693261	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	KCNH7-95	NM_173162	exon2	c.T93G	p.I31M	ATTTGCAATGATA	.	61.0	41.0	64.0	0.0	.	Atlas-SNP
HECW2	57520	hgsc.bcm.edu	37	2	197122592	197122592	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	HECW2-668	NM_020760	exon18	c.G3374T	p.G1125V	ACCAATCCTGGAG	.	116.0	9.0	93.0	0.0	.	Atlas-SNP
SF3B1	23451	hgsc.bcm.edu	37	2	198281581	198281581	+	Missense_Mutation	SNP	C	C	A	rs139823279	alternate_allele	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	SF3B1-140	NM_012433	exon6	c.G550T	p.V184F	CATTGACGACTTT	.	60.0	35.0	81.0	0.0	C|1.000;T|0.000	Atlas-SNP
ADAM23	8745	hgsc.bcm.edu	37	2	207454139	207454139	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	ADAM23-228	NM_003812	exon21	c.C1859A	p.A620E	AGGCTGCAGGGTC	.	66.0	47.0	73.0	0.0	.	Atlas-SNP
ABCA12	26154	hgsc.bcm.edu	37	2	215866333	215866333	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	ABCA12,brain,glioma,0	ABCA12-99	NM_173076	exon21	c.G2812T	p.E938X	CCATTTCATCTAT	.	116.0	7.0	125.0	0.0	.	Atlas-SNP
SMARCAL1	50485	hgsc.bcm.edu	37	2	217332761	217332761	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	SMARCAL1-293	NM_014140	exon14	c.G2236T	p.E746X	GAGCTTGAGAGAA	.	70.0	49.0	69.0	0.0	.	Atlas-SNP
PPP1R7	5510	hgsc.bcm.edu	37	2	242092956	242092956	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	PPP1R7-660	NM_002712	exon2	c.G118A	p.V40M	GGCATCGTGGCCG	.	185.0	10.0	125.0	0.0	.	Atlas-SNP
DLEC1	9940	hgsc.bcm.edu	37	3	38105387	38105387	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	DLEC1-161	NM_007337	exon6	c.T1150C	p.Y384H	ACAGATTATGAAA	.	110.0	17.0	102.0	0.0	.	Atlas-SNP
RUVBL1	8607	hgsc.bcm.edu	37	3	127842496	127842496	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	RUVBL1-227	NM_003707	exon1	c.G72T	p.L24L	CAGCCCCAGCCCT	.	104.0	12.0	66.0	0.0	.	Atlas-SNP
HLTF	6596	hgsc.bcm.edu	37	3	148763946	148763946	+	Missense_Mutation	SNP	T	T	A	rs137866464	alternate_allele	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	HLTF-659	NM_139048	exon18	c.A1993T	p.I665F	GCTGAATAAATAC	.	121.0	83.0	119.0	0.0	T|1.000;C|0.000	Atlas-SNP
CLDN1	9076	hgsc.bcm.edu	37	3	190039777	190039777	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	CLDN1-91	NM_021101	exon1	c.G219T	p.L73L	ACTGCTCAGATTC	.	130.0	72.0	113.0	0.0	.	Atlas-SNP
NUDT9	53343	hgsc.bcm.edu	37	4	88372877	88372877	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	NUDT9-90	NM_198038	exon6	c.A629T	p.D210V	GCCAAGACCACCT	.	48.0	35.0	58.0	0.0	.	Atlas-SNP
GSTCD	79807	hgsc.bcm.edu	37	4	106746955	106746955	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	GSTCD-92	NM_024751	exon8	c.G1267T	p.G423X	AATATTGGAGTAA	.	81.0	48.0	121.0	0.0	.	Atlas-SNP
ENPEP	2028	hgsc.bcm.edu	37	4	111470691	111470691	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	ENPEP-157	NM_001977	exon16	c.C2233A	p.R745S	TTACTCCGTTCCT	.	108.0	33.0	120.0	0.0	.	Atlas-SNP
ANP32C	23520	hgsc.bcm.edu	37	4	165118218	165118218	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	ANP32C-90	NM_012403	exon1	c.G646T	p.D216Y	CGCCATCTACCTC	.	142.0	21.0	148.0	0.0	.	Atlas-SNP
EXOC3	11336	hgsc.bcm.edu	37	5	446342	446342	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	EXOC3-90	NM_007277	exon2	c.G22C	p.A8P	CGGGAGGCCGTTG	.	165.0	12.0	101.0	0.0	.	Atlas-SNP
SPEF2	79925	hgsc.bcm.edu	37	5	35644627	35644627	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	SPEF2-26	NM_024867	exon4	c.G585T	p.K195N	TGAAAAGGTTCTA	.	173.0	50.0	122.0	0.0	.	Atlas-SNP
ZSWIM6	57688	hgsc.bcm.edu	37	5	60831349	60831349	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	.	NM_020928	exon10	c.G2284C	p.E762Q	CATCGGGAGAGCG	.	212.0	102.0	206.0	0.0	.	Atlas-SNP
SLCO6A1	133482	hgsc.bcm.edu	37	5	101755672	101755672	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	SLCO6A1-96	NM_173488	exon8	c.G1330T	p.V444F	TGGAAACAATGAC	.	126.0	53.0	139.0	0.0	.	Atlas-SNP
PCDHGB7	56099	hgsc.bcm.edu	37	5	140799203	140799203	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	PCDHGB7-29	NM_032101	exon1	c.G1777C	p.A593P	GTGGTGGCCGTGG	.	100.0	6.0	20.0	0.0	.	Atlas-SNP
KCTD16	57528	hgsc.bcm.edu	37	5	143586513	143586513	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	KCTD16-137	NM_020768	exon3	c.G236T	p.G79V	GAGATGGATTCTT	.	127.0	20.0	135.0	0.0	.	Atlas-SNP
ZNF346	23567	hgsc.bcm.edu	37	5	176449890	176449890	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	ZNF346-90	NM_012279	exon1	c.G151T	p.A51S	TCCGGTGCCCAGC	.	94.0	5.0	41.0	0.0	.	Atlas-SNP
KIAA0319	9856	hgsc.bcm.edu	37	6	24581184	24581184	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	KIAA0319-92	NM_001168377	exon7	c.G1249T	p.E417X	ATCCTTCTCCAAA	.	50.0	9.0	72.0	0.0	.	Atlas-SNP
TTBK1	84630	hgsc.bcm.edu	37	6	43230667	43230667	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	TTBK1-353	NM_032538	exon13	c.C1565T	p.A522V	AGGAGGCCCTGAG	.	423.0	72.0	351.0	0.0	.	Atlas-SNP
SENP6	26054	hgsc.bcm.edu	37	6	76423518	76423518	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	SENP6-660	NM_015571	exon23	c.C3106T	p.Q1036X	GTATTGCAGTATG	.	75.0	7.0	56.0	0.0	.	Atlas-SNP
TSPYL4	23270	hgsc.bcm.edu	37	6	116574092	116574092	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	.	NM_021648	exon1	c.C1080G	p.D360E	GCTGTGGTCTGAA	.	124.0	12.0	115.0	0.0	.	Atlas-SNP
GPR126	57211	hgsc.bcm.edu	37	6	142729367	142729367	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	GPR126-91	NM_001032394	exon15	c.G2265T	p.K755N	TCTGAAGGATCCT	.	257.0	15.0	198.0	0.0	.	Atlas-SNP
TULP4	56995	hgsc.bcm.edu	37	6	158900810	158900810	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	TULP4-91	NM_001007466	exon7	c.C1054A	p.H352N	TGGGGTCACCGGG	.	103.0	37.0	69.0	0.0	.	Atlas-SNP
TWISTNB	221830	hgsc.bcm.edu	37	7	19738103	19738103	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	TWISTNB-91	NM_001002926	exon4	c.C853A	p.Q285K	CTTCCTGGTGCTT	.	94.0	5.0	46.0	0.0	.	Atlas-SNP
GPNMB	10457	hgsc.bcm.edu	37	7	23296587	23296587	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	GPNMB-580	NM_001005340	exon4	c.C444T	p.T148T	TGGCACCGGCCAA	.	317.0	135.0	225.0	0.0	.	Atlas-SNP
PKD1L1	168507	hgsc.bcm.edu	37	7	47930172	47930172	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	PKD1L1-145	NM_138295	exon16	c.G2643T	p.V881V	CAGGAACACCCGG	.	139.0	11.0	88.0	0.0	.	Atlas-SNP
PHTF2	57157	hgsc.bcm.edu	37	7	77579101	77579101	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	PHTF2-23	NM_020432	exon14	c.C1952A	p.S651X	TTGGATCAGAAAC	.	167.0	9.0	114.0	0.0	.	Atlas-SNP
NPTX2	4885	hgsc.bcm.edu	37	7	98256610	98256610	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	NPTX2-515	NM_002523	exon4	c.G1022A	p.W341X	CCCCCTGGCACCC	.	178.0	17.0	105.0	0.0	.	Atlas-SNP
ZNF277	11179	hgsc.bcm.edu	37	7	111982631	111982631	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	ZNF277-155	NM_021994	exon12	c.C1200A	p.T400T	TCCAACCTATGAA	.	93.0	37.0	67.0	0.0	.	Atlas-SNP
EXOC4	60412	hgsc.bcm.edu	37	7	133692487	133692487	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	EXOC4-159	NM_021807	exon17	c.C2586A	p.I862I	GCGCATCAGTGAG	.	151.0	44.0	108.0	0.0	.	Atlas-SNP
TAS2R40	259286	hgsc.bcm.edu	37	7	142919418	142919418	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	TAS2R40-23	NM_176882	exon1	c.C247A	p.L83I	AGTCTGCTATTCC	.	70.0	6.0	61.0	0.0	.	Atlas-SNP
OR2A14	135941	hgsc.bcm.edu	37	7	143826247	143826247	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	OR2A14-90	NM_001001659	exon1	c.G42A	p.P14P	CTTGCCGCGATTC	.	187.0	57.0	165.0	0.0	.	Atlas-SNP
OR2A14	135941	hgsc.bcm.edu	37	7	143826338	143826338	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	OR2A14-90	NM_001001659	exon1	c.T133G	p.F45V	GTCATCTTTGGGA	.	276.0	27.0	197.0	0.0	.	Atlas-SNP
COL22A1	169044	hgsc.bcm.edu	37	8	139609190	139609190	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	COL22A1-103	NM_152888	exon62	c.C4389A	p.T1463T	ACGCAGGGTTTCC	.	101.0	20.0	100.0	0.0	.	Atlas-SNP
ZCCHC6	79670	hgsc.bcm.edu	37	9	88918065	88918065	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	ZCCHC6-92	NM_024617	exon25	c.G4030T	p.D1344Y	ATCTATCATTTGG	.	125.0	11.0	111.0	0.0	.	Atlas-SNP
WNK2	65268	hgsc.bcm.edu	37	9	96025908	96025908	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	WNK2-765	NM_006648	exon14	c.T3471C	p.F1157F	CGCCTTTGGAGGG	.	74.0	9.0	51.0	0.0	.	Atlas-SNP
DBH	1621	hgsc.bcm.edu	37	9	136518101	136518101	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	DBH-516	NM_000787	exon9	c.G1414T	p.D472Y	ACAGAAGACCGGG	.	264.0	23.0	249.0	0.0	.	Atlas-SNP
GLT6D1	360203	hgsc.bcm.edu	37	9	138517976	138517976	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	GLT6D1-91	NM_182974	exon4	c.C196A	p.L66M	TTTCCAGGACCCG	.	144.0	52.0	123.0	0.0	.	Atlas-SNP
MAP7D2	256714	hgsc.bcm.edu	37	X	20044071	20044071	+	Splice_Site	SNP	C	C	A	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	MAP7D2-195	NM_001168467	exon9	c.729-1G>T	.	GCTGTCCTGGAAA	.	87.0	21.0	48.0	0.0	.	Atlas-SNP
SUPT20HL1	100130302	hgsc.bcm.edu	37	X	24382525	24382525	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	.	NM_001136234	exon1	c.G1648C	p.A550P	CCTGCCGCTGCTC	.	91.0	14.0	72.0	0.0	.	Atlas-SNP
CXorf22	170063	hgsc.bcm.edu	37	X	35993875	35993875	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	CXorf22-131	NM_152632	exon15	c.C2558A	p.S853Y	TATCTTCTAATGA	.	140.0	18.0	90.0	0.0	.	Atlas-SNP
