Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Algorithm
METTL7B	196410	hgsc.bcm.edu	37	12	56075586	56075586	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	METTL7B-514	NM_152637	exon1	c.C48T	p.T16T	TCTTACCCTGCCC	.	99.0	7.0	78.0	0.0	.	Atlas-SNP
NUDT4	11163	hgsc.bcm.edu	37	12	93792979	93792979	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	NUDT4-90	NM_019094	exon5	c.G367C	p.E123Q	AAAGTAGAAGATG	.	275.0	69.0	217.0	0.0	.	Atlas-SNP
CCDC168	643677	hgsc.bcm.edu	37	13	103382007	103382007	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	.	NM_001146197	exon4	c.C21040G	p.P7014A	AAAAGGGCCGGTT	.	106.0	16.0	80.0	0.0	.	Atlas-SNP
NDUFAF1	51103	hgsc.bcm.edu	37	15	41680715	41680715	+	Silent	SNP	A	A	T	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	NDUFAF1-91	NM_016013	exon4	c.T765A	p.P255P	GGAAAAAGGAATC	.	98.0	18.0	109.0	0.0	.	Atlas-SNP
C15orf48	84419	hgsc.bcm.edu	37	15	45724279	45724279	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	C15orf48-91	NM_197955	exon4	c.A132G	p.R44R	TGATCGAAAAAAA	.	54.0	16.0	60.0	0.0	.	Atlas-SNP
ADAMTS7	11173	hgsc.bcm.edu	37	15	79051846	79051846	+	Missense_Mutation	SNP	T	T	C	rs199524707		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	ADAMTS7-226	NM_014272	exon24	c.A4978G	p.I1660V	TGCGGATGGTGGG	.	79.0	7.0	21.0	0.0	.	Atlas-SNP
ZNF319	57567	hgsc.bcm.edu	37	16	58031921	58031921	+	Silent	SNP	G	G	A	rs144999714		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	ZNF319-90	NM_020807	exon2	c.C249T	p.H83H	CAGGTCGTGACCA	.	92.0	29.0	70.0	0.0	G|1.000;A|0.000	Atlas-SNP
GRIN2C	2905	hgsc.bcm.edu	37	17	72846371	72846371	+	Missense_Mutation	SNP	C	C	T	rs140384270	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	GRIN2C-228	NM_000835	exon6	c.G1465A	p.G489S	ATACGCCGCGCAC	.	94.0	5.0	163.0	0.0	C|0.999;T|0.001	Atlas-SNP
CBX4	8535	hgsc.bcm.edu	37	17	77807917	77807918	+	In_Frame_Ins	INS	-	-	GCCGCC	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	CBX4-228	NM_003655	exon5	c.1524_1525insGGCGGC	p.A508delinsAAA	.	.	57.0	30.0	32.0	0.0	.	Atlas-Indel
RANBP3	8498	hgsc.bcm.edu	37	19	5951537	5951537	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	RANBP3-272	NM_003624	exon3	c.A149T	p.H50L	GTGCCATGGTGGG	.	103.0	18.0	60.0	0.0	.	Atlas-SNP
UBA2	10054	hgsc.bcm.edu	37	19	34929551	34929551	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	UBA2-227	NM_005499	exon6	c.G461C	p.G154A	CATAGGGTGTGAC	.	189.0	47.0	114.0	0.0	.	Atlas-SNP
HPN	3249	hgsc.bcm.edu	37	19	35551399	35551399	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	HPN-515	NM_002151	exon9	c.C603T	p.A201A	GACAGCCGCCCAC	.	136.0	28.0	72.0	0.0	.	Atlas-SNP
ZNF585B	92285	hgsc.bcm.edu	37	19	37677163	37677163	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	ZNF585B-91	NM_152279	exon5	c.A1276T	p.I426F	GTGTAATCAAGTG	.	156.0	42.0	103.0	0.0	.	Atlas-SNP
SCAF1	58506	hgsc.bcm.edu	37	19	50156834	50156834	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	SCAF1-68	NM_021228	exon7	c.C3188G	p.S1063C	CGGGGTCCACAGC	.	93.0	17.0	20.0	0.0	.	Atlas-SNP
VN1R2	317701	hgsc.bcm.edu	37	19	53761677	53761677	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	VN1R2-90	NM_173856	exon1	c.A49G	p.I17V	ATAAATATCAGCG	.	120.0	28.0	79.0	0.0	.	Atlas-SNP
ZNF444	55311	hgsc.bcm.edu	37	19	56671359	56671359	+	Missense_Mutation	SNP	C	C	G	rs145075834		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	ZNF444-90	NM_001253792	exon5	c.C770G	p.T257S	GCAAGACCTTCTA	.	41.0	9.0	6.0	0.0	C|0.987;G|0.013	Atlas-SNP
AJAP1	55966	hgsc.bcm.edu	37	1	4772335	4772335	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	AJAP1-515	NM_001042478	exon2	c.G405A	p.S135S	GTCCTCGTCCTCG	.	21.0	11.0	12.0	0.0	.	Atlas-SNP
PAPPA2	60676	hgsc.bcm.edu	37	1	176525604	176525604	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	PAPPA2-548	NM_020318	exon2	c.G146A	p.R49H	GAGAACGTTGTTG	.	194.0	66.0	246.0	0.0	.	Atlas-SNP
DNMT3B	1789	hgsc.bcm.edu	37	20	31372582	31372582	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	DNMT3B-660	NM_175848	exon4	c.G223T	p.D75Y	GATGGCGACGGGG	.	128.0	37.0	123.0	0.0	.	Atlas-SNP
STK4	6789	hgsc.bcm.edu	37	20	43623747	43623747	+	Missense_Mutation	SNP	G	G	A	rs202070040		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	STK4-767	NM_006282	exon6	c.G542A	p.R181Q	CCAAGCGGAATAC	.	169.0	56.0	149.0	0.0	G|0.999;A|0.000	Atlas-SNP
ITSN2	50618	hgsc.bcm.edu	37	2	24522816	24522816	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	ITSN2-539	NM_019595	exon12	c.C1306A	p.R436R	CCTCTCGTTGTCT	.	68.0	4.0	65.0	0.0	.	Atlas-SNP
ABCA12	26154	hgsc.bcm.edu	37	2	215914356	215914356	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	ABCA12-99	NM_173076	exon6	c.C687G	p.F229L	CTGGGAGAACTGT	.	78.0	29.0	127.0	0.0	.	Atlas-SNP
RBM44	375316	hgsc.bcm.edu	37	2	238729832	238729832	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	RBM44-26	NM_001080504	exon6	c.G2035A	p.E679K	CCACTGGAAGAGC	.	82.0	37.0	80.0	0.0	.	Atlas-SNP
APOB	338	hgsc.bcm.edu	37	2	21224859	21224859	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	APOB-175	NM_000384	exon29	c.13436delG	p.S4479fs	.	.	53.0	19.0	62.0	0.0	.	Atlas-Indel
CCDC54	84692	hgsc.bcm.edu	37	3	107096799	107096799	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	CCDC54-90	NM_032600	exon1	c.C365T	p.T122M	GCACAACGACTAA	.	118.0	52.0	137.0	0.0	.	Atlas-SNP
HEG1	57493	hgsc.bcm.edu	37	3	124696757	124696757	+	Missense_Mutation	SNP	G	G	T	rs186214189	by1000genomes;alternate_allele	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	HEG1-70	NM_020733	exon15	c.C3767A	p.A1256E	CCTCCCGCGGCTG	.	68.0	4.0	101.0	0.0	G|0.999;A|0.001	Atlas-SNP
ZBBX	79740	hgsc.bcm.edu	37	3	167051700	167051700	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	ZBBX-92	NM_024687	exon10	c.C602A	p.P201H	TCTTTGGGTTCAT	.	62.0	32.0	55.0	0.0	.	Atlas-SNP
USP38	84640	hgsc.bcm.edu	37	4	144135926	144135926	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	USP38-660	NM_032557	exon9	c.A2797G	p.T933A	AAAATTACGAGCA	.	231.0	48.0	218.0	0.0	.	Atlas-SNP
PRDM9	56979	hgsc.bcm.edu	37	5	23509687	23509687	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	PRDM9-139	NM_020227	exon3	c.G178A	p.A60T	TATAATGCACTGA	.	249.0	69.0	145.0	0.0	.	Atlas-SNP
SPEF2	79925	hgsc.bcm.edu	37	5	35667294	35667294	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	SPEF2-26	NM_024867	exon9	c.G1288A	p.A430T	GTATGTGCAGAAA	.	337.0	74.0	303.0	0.0	.	Atlas-SNP
ENC1	8507	hgsc.bcm.edu	37	5	73931914	73931914	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	ENC1-228	NM_003633	exon2	c.C397T	p.R133W	CATCCCGGATGTC	.	112.0	25.0	121.0	0.0	.	Atlas-SNP
CARD11	84433	hgsc.bcm.edu	37	7	2946306	2946306	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	CARD11-870	NM_032415	exon25	c.G3431A	p.R1144H	GTCTTGCGCTGCT	.	187.0	79.0	222.0	0.0	.	Atlas-SNP
CFTR	1080	hgsc.bcm.edu	37	7	117149172	117149172	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	CFTR-518	NM_000492	exon3	c.C249G	p.F83L	TATGTTCTATGGA	.	57.0	22.0	34.0	0.0	.	Atlas-SNP
SLC4A2	6522	hgsc.bcm.edu	37	7	150763615	150763616	+	In_Frame_Ins	INS	-	-	GGAGGC	rs150330052		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	SLC4A2-90	NM_003040	exon6	c.590_591insGGAGGC	p.E197delinsEEA	.	.	51.0	10.0	7.0	0.0	-|0.038;GGAGGC|0.962	Atlas-Indel
PODXL	5420	hgsc.bcm.edu	37	7	131241030	131241035	+	In_Frame_Del	DEL	GGCGAC	GGCGAC	-	rs11277659		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	GGCGAC	GGCGAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	PODXL-136	NM_005397	exon1	c.85_90del	p.29_30del	.	.	70.0	15.0	9.0	0.0	.	Pindel
GPR124	25960	hgsc.bcm.edu	37	8	37686420	37686420	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	GPR124-157	NM_032777	exon3	c.A353G	p.N118S	GGAACAACATCAT	.	48.0	8.0	39.0	0.0	.	Atlas-SNP
ENPP2	5168	hgsc.bcm.edu	37	8	120594822	120594822	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	ENPP2-292	NM_001130863	exon18	c.G1564C	p.A522P	TAGGAGCTGGCTT	.	162.0	44.0	90.0	0.0	.	Atlas-SNP
JAK2	3717	hgsc.bcm.edu	37	9	5055714	5055714	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	JAK2-75307	NM_004972	exon8	c.A982G	p.I328V	GTCAGTATTAAGC	.	21.0	10.0	51.0	0.0	.	Atlas-SNP
FRMPD4	9758	hgsc.bcm.edu	37	X	12736016	12736016	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	FRMPD4-263	NM_014728	exon16	c.C3071A	p.T1024N	CCTGCACTAGCAA	.	203.0	123.0	382.0	1.0	.	Atlas-SNP
