Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Algorithm
SFMBT2	57713	hgsc.bcm.edu	37	10	7214601	7214601	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SFMBT2-141	NM_001029880	exon18	c.G2007T	p.K669N	GATCTTCTTTCTC	.	22.0	9.0	21.0	0.0	.	Atlas-SNP
GATA3	2625	hgsc.bcm.edu	37	10	8115981	8115981	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	GATA3-1004	NM_002051	exon6	c.G1327T	p.G443C	GCCATGGGTTAGA	.	64.0	26.0	61.0	0.0	.	Atlas-SNP
MLLT10	8028	hgsc.bcm.edu	37	10	21962834	21962834	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MLLT10-658	NM_001195626	exon10	c.C1607A	p.S536Y	GCTCATCTCCAGT	.	43.0	7.0	73.0	0.0	.	Atlas-SNP
BMI1	648	hgsc.bcm.edu	37	10	22618192	22618192	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	BMI1-228	NM_005180	exon10	c.G702T	p.M234I	AAGAATGAAGATC	.	29.0	8.0	37.0	0.0	.	Atlas-SNP
GJD4	219770	hgsc.bcm.edu	37	10	35897531	35897531	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	GJD4-155	NM_153368	exon2	c.G1090T	p.A364S	CTGAGAGCCAGGA	.	158.0	10.0	128.0	0.0	.	Atlas-SNP
C10orf71	118461	hgsc.bcm.edu	37	10	50531426	50531426	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	C10orf71-90	NM_001135196	exon3	c.C836A	p.S279X	TTGAGTCATGGAA	.	136.0	38.0	161.0	0.0	.	Atlas-SNP
ARID5B	84159	hgsc.bcm.edu	37	10	63845627	63845627	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ARID5B-94	NM_032199	exon9	c.G1366T	p.E456X	GAAAAAGAAAATG	.	18.0	10.0	29.0	0.0	.	Atlas-SNP
SEC24C	9632	hgsc.bcm.edu	37	10	75528805	75528805	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SEC24C-92	NM_198597	exon17	c.C2319A	p.S773R	CATGAGCAACACG	.	97.0	46.0	153.0	0.0	.	Atlas-SNP
RRP12	23223	hgsc.bcm.edu	37	10	99126277	99126277	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	RRP12-92	NM_015179	exon28	c.G3317T	p.R1106L	CATGCCCGGCTCC	.	58.0	10.0	75.0	0.0	.	Atlas-SNP
AS3MT	57412	hgsc.bcm.edu	37	10	104638614	104638614	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	AS3MT-44	NM_020682	exon9	c.C751A	p.R251S	GACTGTCGTTTTG	.	96.0	17.0	128.0	0.0	.	Atlas-SNP
CCDC172	374355	hgsc.bcm.edu	37	10	118101581	118101581	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_198515	exon5	c.G316T	p.D106Y	GAGGAAGACAAAT	.	92.0	7.0	88.0	0.0	.	Atlas-SNP
OR51G1	79324	hgsc.bcm.edu	37	11	4945010	4945010	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	OR51G1-70	NM_001005237	exon1	c.T560C	p.M187T	AGCTTCATGATCT	.	89.0	15.0	85.0	0.0	.	Atlas-SNP
OR51I2	390064	hgsc.bcm.edu	37	11	5475467	5475467	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	OR51I2-72	NM_001004754	exon1	c.C749A	p.A250E	TACTTGCATTTTA	.	129.0	20.0	175.0	0.0	.	Atlas-SNP
NELL1	4745	hgsc.bcm.edu	37	11	20907034	20907034	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	NELL1-155	NM_006157	exon5	c.C551A	p.P184Q	TTCCCCCAGGAAT	.	77.0	35.0	81.0	0.0	.	Atlas-SNP
DCDC5	100506627	hgsc.bcm.edu	37	11	30930510	30930510	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	DCDC5-23	NM_020869	exon10	c.G1222T	p.E408X	TGTTTTCTTCTTT	.	88.0	11.0	66.0	0.0	.	Atlas-SNP
RAG1	5896	hgsc.bcm.edu	37	11	36597790	36597790	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	RAG1-230	NM_000448	exon2	c.C2936A	p.A979D	TGAATGCCAGGCA	.	41.0	37.0	57.0	0.0	.	Atlas-SNP
DGKZ	8525	hgsc.bcm.edu	37	11	46397072	46397072	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	DGKZ-676	NM_003646	exon20	c.G1801T	p.D601Y	CAGGTGGATGGCG	.	93.0	48.0	25.0	0.0	.	Atlas-SNP
OR4X2	119764	hgsc.bcm.edu	37	11	48267186	48267186	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	OR4X2-68	NM_001004727	exon1	c.C531A	p.L177L	CCTTCTCAAACTT	.	70.0	37.0	121.0	0.0	.	Atlas-SNP
TNKS1BP1	85456	hgsc.bcm.edu	37	11	57087809	57087809	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TNKS1BP1-91	NM_033396	exon3	c.G472T	p.A158S	TGGTGGCCGCGAA	.	60.0	28.0	59.0	0.0	.	Atlas-SNP
MEN1	4221	hgsc.bcm.edu	37	11	64574692	64574692	+	Splice_Site	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MEN1-3017	NM_130804	exon7	c.799-1G>T	.	CAGCTTCTAGGAG	.	26.0	10.0	34.0	0.0	.	Atlas-SNP
PACS1	55690	hgsc.bcm.edu	37	11	66001334	66001334	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PACS1-74	NM_018026	exon16	c.C1917A	p.L639L	CATCCTCAGGTTC	.	132.0	70.0	144.0	0.0	.	Atlas-SNP
CD248	57124	hgsc.bcm.edu	37	11	66083700	66083700	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CD248-154	NM_020404	exon1	c.G799T	p.D267Y	GCCCGTCTGCTGC	.	124.0	9.0	74.0	0.0	.	Atlas-SNP
RNF169	254225	hgsc.bcm.edu	37	11	74546991	74546991	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	RNF169-69	NM_001098638	exon6	c.C1343A	p.S448X	CCCTTTCAAAAGC	.	46.0	10.0	57.0	0.0	.	Atlas-SNP
EXPH5	23086	hgsc.bcm.edu	37	11	108380726	108380726	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	EXPH5-95	NM_015065	exon6	c.G5508T	p.G1836G	TTCATTCCCAAGG	.	70.0	35.0	92.0	0.0	.	Atlas-SNP
OR10G4	390264	hgsc.bcm.edu	37	11	123886949	123886949	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	OR10G4-93	NM_001004462	exon1	c.C668A	p.S223Y	TCTGTTCCATCCT	.	221.0	97.0	285.0	1.0	.	Atlas-SNP
PPP1CA	5499	hgsc.bcm.edu	37	11	67167109	67167110	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PPP1CA-659	NM_206873	exon3	c.314_315del	p.105_105del	.	.	120.0	20.0	182.0	0.0	.	Atlas-Indel
ANO2	57101	hgsc.bcm.edu	37	12	5685071	5685071	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ANO2-139	NM_020373	exon24	c.C2550A	p.F850L	GACGTTGAAAAAG	.	186.0	18.0	145.0	0.0	.	Atlas-SNP
STYK1	55359	hgsc.bcm.edu	37	12	10777358	10777358	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	STYK1-1379	NM_018423	exon8	c.C818A	p.A273D	TCATAAGCCAGGC	.	258.0	63.0	164.0	0.0	.	Atlas-SNP
ASUN	55726	hgsc.bcm.edu	37	12	27066421	27066421	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_018164	exon14	c.G1774T	p.E592X	CCTGTTCATAATC	.	100.0	28.0	93.0	0.0	.	Atlas-SNP
KRT3	3850	hgsc.bcm.edu	37	12	53189266	53189266	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	KRT3-90	NM_057088	exon1	c.C561A	p.I187I	GGGGTCGATCTCC	.	204.0	23.0	129.0	0.0	.	Atlas-SNP
LACRT	90070	hgsc.bcm.edu	37	12	55025610	55025610	+	Missense_Mutation	SNP	C	C	A	rs201410599	alternate_allele	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	LACRT-90	NM_033277	exon4	c.G267T	p.E89D	ACTTTTCTCCACT	.	108.0	13.0	73.0	0.0	C|0.999;T|0.001	Atlas-SNP
ESYT1	23344	hgsc.bcm.edu	37	12	56522216	56522216	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ESYT1-95	NM_015292	exon1	c.C113A	p.S38Y	CAGGTTCTGGGGG	.	91.0	22.0	39.0	0.0	.	Atlas-SNP
ZFC3H1	196441	hgsc.bcm.edu	37	12	72017939	72017939	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ZFC3H1-138	NM_144982	exon23	c.G4451T	p.R1484I	TGAACTCTAAACA	.	78.0	28.0	52.0	0.0	.	Atlas-SNP
GLIPR1L2	144321	hgsc.bcm.edu	37	12	75804245	75804245	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	GLIPR1L2-91	NM_152436	exon2	c.G266T	p.R89I	CTGCTAGAGCATG	.	210.0	49.0	131.0	0.0	.	Atlas-SNP
DCN	1634	hgsc.bcm.edu	37	12	91545457	91545457	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	DCN-555	NM_001920	exon7	c.G859T	p.G287W	CCAGCCCACCAGG	.	160.0	17.0	114.0	0.0	.	Atlas-SNP
PLEKHG7	440107	hgsc.bcm.edu	37	12	93149662	93149662	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PLEKHG7-23	NM_001004330	exon7	c.G552T	p.E184D	ACAGGAGATTATA	.	142.0	45.0	84.0	0.0	.	Atlas-SNP
NR2C1	7181	hgsc.bcm.edu	37	12	95434275	95434275	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	NR2C1-187	NM_001127362	exon10	c.G1230T	p.S410S	AGGAATCGAAAGT	.	241.0	21.0	221.0	0.0	.	Atlas-SNP
USP44	84101	hgsc.bcm.edu	37	12	95911959	95911959	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	USP44-658	NM_001042403	exon6	c.G2110A	p.D704N	AGGTATCAGCGTC	.	106.0	17.0	103.0	0.0	.	Atlas-SNP
HVCN1	84329	hgsc.bcm.edu	37	12	111098996	111098996	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	HVCN1-91	NM_001256413	exon3	c.G219T	p.R73S	CAGTTTCCTCAAC	.	301.0	76.0	253.0	0.0	.	Atlas-SNP
MAP1LC3B2	643246	hgsc.bcm.edu	37	12	117013934	117013934	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MAP1LC3B2-68	NM_001085481	exon2	c.C187A	p.L63I	AGTGAGCTCATCA	.	424.0	124.0	373.0	0.0	.	Atlas-SNP
GCN1L1	10985	hgsc.bcm.edu	37	12	120567240	120567240	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	GCN1L1-94	NM_006836	exon57	c.C7730A	p.A2577E	TTATTTGCCCACC	.	112.0	14.0	131.0	0.0	.	Atlas-SNP
DNAH10	196385	hgsc.bcm.edu	37	12	124399087	124399087	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	DNAH10-95	NM_207437	exon60	c.G10210T	p.E3404X	GATGTTGAGATCA	.	77.0	13.0	64.0	0.0	.	Atlas-SNP
TMEM132C	92293	hgsc.bcm.edu	37	12	129028583	129028583	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TMEM132C-68	NM_001136103	exon3	c.C1056A	p.G352G	GGTGGGCAGCGGC	.	258.0	108.0	131.0	0.0	.	Atlas-SNP
PARP4	143	hgsc.bcm.edu	37	13	25016806	25016806	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PARP4-94	NM_006437	exon29	c.G3465T	p.L1155F	AGATTTCAAGGTT	.	105.0	6.0	116.0	0.0	.	Atlas-SNP
PDS5B	23047	hgsc.bcm.edu	37	13	33316808	33316808	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PDS5B-94	NM_015032	exon23	c.G2555T	p.R852I	CCTTAAGATTGCT	.	73.0	32.0	104.0	0.0	.	Atlas-SNP
CCDC168	643677	hgsc.bcm.edu	37	13	103399003	103399003	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_001146197	exon4	c.G4044T	p.V1348V	TTTCATCACTTTA	.	81.0	15.0	59.0	0.0	.	Atlas-SNP
CUL4A	8451	hgsc.bcm.edu	37	13	113909353	113909353	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CUL4A-651	NM_001008895	exon18	c.G1945T	p.E649X	GAAGTGGAAGATG	.	270.0	94.0	230.0	0.0	.	Atlas-SNP
CDH24	64403	hgsc.bcm.edu	37	14	23521682	23521682	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CDH24-90	NM_022478	exon8	c.G1363T	p.G455C	CCTCACCGAGCTC	.	120.0	12.0	62.0	0.0	.	Atlas-SNP
BCL2L2-PABPN1	100529063	hgsc.bcm.edu	37	14	23791464	23791464	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_001199864	exon4	c.G507A	p.E169E	GAACGAGGTAGAG	.	240.0	51.0	168.0	0.0	.	Atlas-SNP
KHNYN	23351	hgsc.bcm.edu	37	14	24901482	24901482	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	KHNYN-93	NM_015299	exon3	c.C1015A	p.R339R	CAGTCCCGAGGAG	.	162.0	11.0	131.0	0.0	.	Atlas-SNP
AKAP6	9472	hgsc.bcm.edu	37	14	33291762	33291762	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	AKAP6-733	NM_004274	exon13	c.C4743A	p.G1581G	ATTGGGCATCTTT	.	103.0	28.0	99.0	0.0	.	Atlas-SNP
RALGAPA1	253959	hgsc.bcm.edu	37	14	36191028	36191028	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	RALGAPA1-138	NM_194301	exon16	c.C2132A	p.S711X	TCAACTGAAACTT	.	94.0	18.0	65.0	0.0	.	Atlas-SNP
ERO1L	30001	hgsc.bcm.edu	37	14	53110333	53110333	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ERO1L-90	NM_014584	exon16	c.G1362T	p.V454V	TTCTTTCACACTT	.	43.0	10.0	48.0	0.0	.	Atlas-SNP
PELI2	57161	hgsc.bcm.edu	37	14	56755230	56755230	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PELI2-91	NM_021255	exon4	c.G385T	p.A129S	GACGAAGCCCAGA	.	175.0	29.0	160.0	0.0	.	Atlas-SNP
SYNE2	23224	hgsc.bcm.edu	37	14	64580141	64580141	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SYNE2-164	NM_015180	exon66	c.G12692T	p.R4231M	AAACTAGGCCGGA	.	83.0	24.0	66.0	0.0	.	Atlas-SNP
DLST	1743	hgsc.bcm.edu	37	14	75359678	75359678	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	DLST-227	NM_001933	exon8	c.C584A	p.S195Y	CTCCTTCTGGCAA	.	103.0	15.0	103.0	0.0	.	Atlas-SNP
BEGAIN	57596	hgsc.bcm.edu	37	14	101011394	101011394	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	BEGAIN-68	NM_001159531	exon3	c.C186A	p.S62R	GTAGTTGCTCTGA	.	72.0	7.0	50.0	0.0	.	Atlas-SNP
SIVA1	10572	hgsc.bcm.edu	37	14	105222044	105222044	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SIVA1-514	NM_006427	exon2	c.C196A	p.H66N	GTCGTTCACCTGC	.	117.0	34.0	95.0	0.0	.	Atlas-SNP
FAN1	22909	hgsc.bcm.edu	37	15	31217483	31217483	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	FAN1-90	NM_014967	exon9	c.G2326T	p.D776Y	GTGCAAGATGTGA	.	69.0	15.0	46.0	0.0	.	Atlas-SNP
TRPM1	4308	hgsc.bcm.edu	37	15	31342674	31342674	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TRPM1-94	NM_001252020	exon11	c.G1426T	p.G476W	CTTTCCCTTTCTT	.	151.0	31.0	126.0	0.0	.	Atlas-SNP
EMC4	51234	hgsc.bcm.edu	37	15	34517318	34517318	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_016454	exon1	c.G3T	p.M1I	TGCCATGACGGCC	.	147.0	10.0	86.0	0.0	.	Atlas-SNP
RASGRP1	10125	hgsc.bcm.edu	37	15	38808534	38808534	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	RASGRP1-697	NM_005739	exon6	c.C539A	p.S180Y	TTCCTGGACCAGT	.	150.0	23.0	84.0	0.0	.	Atlas-SNP
TYRO3	7301	hgsc.bcm.edu	37	15	41861213	41861213	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TYRO3-1388	NM_006293	exon9	c.C1245A	p.D415E	TCATGACCGTGCA	.	112.0	10.0	60.0	0.0	.	Atlas-SNP
UNC13C	440279	hgsc.bcm.edu	37	15	54825158	54825158	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	UNC13C-51	NM_001080534	exon24	c.G5590T	p.E1864X	AGTTTCGAACTAA	.	116.0	33.0	142.0	0.0	.	Atlas-SNP
TLN2	83660	hgsc.bcm.edu	37	15	63017258	63017258	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TLN2-573	NM_015059	exon24	c.G3210T	p.K1070N	TGCCAAGATGGCA	.	56.0	20.0	35.0	0.0	.	Atlas-SNP
CLPX	10845	hgsc.bcm.edu	37	15	65443246	65443246	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CLPX-90	NM_006660	exon14	c.C1817A	p.P606Q	TTTGTTGGAGCCC	.	37.0	16.0	40.0	0.0	.	Atlas-SNP
CSK	1445	hgsc.bcm.edu	37	15	75091628	75091628	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CSK-510	NM_004383	exon5	c.G258T	p.K86N	CGGCAAGATCACA	.	92.0	31.0	78.0	0.0	.	Atlas-SNP
IREB2	3658	hgsc.bcm.edu	37	15	78732221	78732221	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	IREB2-90	NM_004136	exon2	c.A104G	p.Y35C	CCAAGTATGGTAA	.	52.0	4.0	52.0	0.0	.	Atlas-SNP
MESDC1	59274	hgsc.bcm.edu	37	15	81295513	81295513	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MESDC1-90	NM_022566	exon1	c.C901A	p.L301I	TGCGTGCTCCTGA	.	72.0	25.0	27.0	0.0	.	Atlas-SNP
HAGHL	84264	hgsc.bcm.edu	37	16	778414	778414	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	HAGHL-90	NM_032304	exon4	c.C387A	p.A129A	ACCCGCCCTGTTC	.	32.0	9.0	9.0	0.0	.	Atlas-SNP
PTX4	390667	hgsc.bcm.edu	37	16	1537885	1537885	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PTX4-90	NM_001013658	exon2	c.C213A	p.F71L	GCTCCGGAACCGG	.	192.0	25.0	141.0	0.0	.	Atlas-SNP
RSL1D1	26156	hgsc.bcm.edu	37	16	11940360	11940360	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	RSL1D1-90	NM_015659	exon5	c.C633A	p.C211X	CTACCTGCAAGAA	.	113.0	27.0	65.0	0.0	.	Atlas-SNP
ACSM3	6296	hgsc.bcm.edu	37	16	20787314	20787314	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ACSM3-91	NM_005622	exon3	c.C373A	p.L125M	GTAATTCTGATTC	.	134.0	12.0	100.0	0.0	.	Atlas-SNP
GGA2	23062	hgsc.bcm.edu	37	16	23491135	23491135	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	GGA2-91	NM_015044	exon11	c.G1080T	p.Q360H	CCCCATCTGCGCA	.	117.0	26.0	97.0	0.0	.	Atlas-SNP
KCTD13	253980	hgsc.bcm.edu	37	16	29918291	29918291	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	KCTD13-90	NM_178863	exon6	c.G892T	p.E298X	TCTCTTCATCCTC	.	147.0	22.0	110.0	0.0	.	Atlas-SNP
ZNF768	79724	hgsc.bcm.edu	37	16	30535865	30535865	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ZNF768-90	NM_024671	exon2	c.G1596T	p.Q532H	GGTCCGCTGGTGG	.	134.0	47.0	15.0	0.0	.	Atlas-SNP
ZNF267	10308	hgsc.bcm.edu	37	16	31927495	31927495	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ZNF267-138	NM_001265588	exon5	c.A1829G	p.N610S	CCTTCAACTATAG	.	99.0	5.0	102.0	0.0	.	Atlas-SNP
CNGB1	1258	hgsc.bcm.edu	37	16	57935280	57935280	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CNGB1-137	NM_001297	exon29	c.G2952T	p.L984L	GTTGGGCAGGTAG	.	143.0	16.0	88.0	0.0	.	Atlas-SNP
HYDIN	54768	hgsc.bcm.edu	37	16	71209570	71209570	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	HYDIN-92	NM_001198543	exon5	c.C507A	p.H169Q	CACTTTGTGGCCA	.	124.0	8.0	97.0	0.0	.	Atlas-SNP
TP53	7157	hgsc.bcm.edu	37	17	7579521	7579521	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	TP53,NS,carcinoma,+1	TP53-70225	NM_001126114	exon4	c.G166T	p.E56X	GGTCTTCAGTGAA	.	23.0	9.0	34.0	1.0	.	Atlas-SNP
TP53	7157	hgsc.bcm.edu	37	17	7579722	7579722	+	Splice_Site	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TP53-70225	NM_000546	exon4	c.75-1G>T	.	GGAAGTCTGAAAG	.	57.0	21.0	42.0	0.0	.	Atlas-SNP
ARHGAP44	9912	hgsc.bcm.edu	37	17	12853032	12853032	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ARHGAP44-90	NM_014859	exon12	c.G1040T	p.W347L	ATGAGTGGATCCA	.	94.0	7.0	123.0	0.0	.	Atlas-SNP
MAP2K3	5606	hgsc.bcm.edu	37	17	21215491	21215491	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MAP2K3-790	NM_002756	exon10	c.G725T	p.W242L	AGTCCTGGGGGAC	.	81.0	8.0	102.0	0.0	.	Atlas-SNP
BLMH	642	hgsc.bcm.edu	37	17	28601155	28601155	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	BLMH-91	NM_000386	exon7	c.C706T	p.R236X	TGTCTCGATATTC	.	55.0	12.0	75.0	0.0	.	Atlas-SNP
RAB11FIP4	84440	hgsc.bcm.edu	37	17	29848225	29848225	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	RAB11FIP4-91	NM_032932	exon5	c.C605A	p.S202Y	ACCTTTCTACACA	.	112.0	12.0	141.0	0.0	.	Atlas-SNP
RAB11FIP4	84440	hgsc.bcm.edu	37	17	29848320	29848320	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	RAB11FIP4-91	NM_032932	exon5	c.C700A	p.P234T	CCTTGCCCCGATG	.	177.0	79.0	205.0	0.0	.	Atlas-SNP
ACACA	31	hgsc.bcm.edu	37	17	35468526	35468526	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ACACA-154	NM_198834	exon52	c.G6505T	p.D2169Y	CCAGATCCTTTCT	.	65.0	8.0	92.0	0.0	.	Atlas-SNP
KRT40	125115	hgsc.bcm.edu	37	17	39140279	39140279	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_182497	exon3	c.G247T	p.G83W	ACACCCCATCCTC	.	125.0	54.0	155.0	0.0	.	Atlas-SNP
RND2	8153	hgsc.bcm.edu	37	17	41180515	41180515	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	RND2-227	NM_005440	exon5	c.C502A	p.R168S	TCTGAGCGCAGCG	.	107.0	9.0	152.0	0.0	.	Atlas-SNP
KCNJ2	3759	hgsc.bcm.edu	37	17	68171641	68171641	+	Missense_Mutation	SNP	G	G	T	rs199473380		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	KCNJ2-90	NM_000891	exon2	c.G461T	p.C154F	ATGAATGCCCAAT	.	87.0	36.0	105.0	0.0	.	Atlas-SNP
MRPS7	51081	hgsc.bcm.edu	37	17	73258729	73258729	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MRPS7-90	NM_015971	exon2	c.G235T	p.A79S	GCTCCAGCAGGGA	.	50.0	19.0	82.0	0.0	.	Atlas-SNP
AFMID	125061	hgsc.bcm.edu	37	17	76202078	76202078	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	AFMID-136	NM_001010982	exon10	c.G832T	p.D278Y	GATGTGGACCACT	.	83.0	21.0	106.0	0.0	.	Atlas-SNP
TBC1D16	125058	hgsc.bcm.edu	37	17	77984098	77984098	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TBC1D16-90	NM_019020	exon3	c.G640T	p.E214X	ACAGTTCCAAAGA	.	152.0	75.0	174.0	0.0	.	Atlas-SNP
SLC14A2	8170	hgsc.bcm.edu	37	18	43221304	43221304	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SLC14A2-93	NM_007163	exon8	c.C1122A	p.I374I	CCTCATCTGTGGT	.	79.0	30.0	102.0	0.0	.	Atlas-SNP
TNFRSF11A	8792	hgsc.bcm.edu	37	18	60036497	60036497	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TNFRSF11A-659	NM_003839	exon9	c.C1347G	p.C449W	AGGCTGCCGGAAC	.	42.0	35.0	48.0	0.0	.	Atlas-SNP
NFATC1	4772	hgsc.bcm.edu	37	18	77246918	77246918	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	NFATC1-290	NM_172387	exon9	c.C2724A	p.D908E	GTTGGACCAGTTG	.	98.0	6.0	61.0	0.0	.	Atlas-SNP
ABCA7	10347	hgsc.bcm.edu	37	19	1047284	1047284	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ABCA7-98	NM_019112	exon15	c.C1974A	p.A658A	TGCGGCCTGCGGC	.	60.0	9.0	34.0	0.0	.	Atlas-SNP
LMNB2	84823	hgsc.bcm.edu	37	19	2434856	2434856	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	LMNB2-290	NM_032737	exon6	c.G911A	p.R304H	TCCTCGCGAGCCG	.	105.0	26.0	41.0	0.0	.	Atlas-SNP
CNN1	1264	hgsc.bcm.edu	37	19	11657510	11657510	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CNN1-90	NM_001299	exon3	c.C206A	p.P69Q	TGCAGCCAGGCTC	.	138.0	45.0	69.0	0.0	.	Atlas-SNP
PALM3	342979	hgsc.bcm.edu	37	19	14169968	14169968	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PALM3-24	NM_001145028	exon1	c.G4T	p.A2S	TCTCCGCCATGGG	.	111.0	7.0	84.0	0.0	.	Atlas-SNP
AKAP8L	26993	hgsc.bcm.edu	37	19	15507978	15507978	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	AKAP8L-1	NM_014371	exon12	c.C1519A	p.H507N	GGTTGTGATCCAT	.	188.0	22.0	141.0	0.0	.	Atlas-SNP
ANKLE1	126549	hgsc.bcm.edu	37	19	17394631	17394631	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_152363	exon5	c.G1058T	p.C353F	GCCCTTGCCGGCA	.	86.0	10.0	81.0	0.0	.	Atlas-SNP
ZNF676	163223	hgsc.bcm.edu	37	19	22363229	22363229	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ZNF676-90	NM_001001411	exon3	c.C1290A	p.F430L	CCAGCTGAAGGCT	.	60.0	8.0	29.0	0.0	.	Atlas-SNP
ZNF254	9534	hgsc.bcm.edu	37	19	24309378	24309378	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ZNF254-90	NM_203282	exon4	c.C576A	p.C192X	ATTTTGCATGCTT	.	111.0	10.0	66.0	0.0	.	Atlas-SNP
LRP3	4037	hgsc.bcm.edu	37	19	33696766	33696766	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	LRP3-92	NM_002333	exon5	c.G1090T	p.V364L	TACCAGGTGAAGG	.	83.0	6.0	35.0	0.0	.	Atlas-SNP
ZFP14	57677	hgsc.bcm.edu	37	19	36831144	36831144	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ZFP14-91	NM_020917	exon5	c.G1584T	p.K528N	ATGAATCTTCTGA	.	102.0	16.0	83.0	0.0	.	Atlas-SNP
WDR87	83889	hgsc.bcm.edu	37	19	38378662	38378662	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_031951	exon6	c.G5532T	p.K1844N	CAGATTCTTCTTT	.	104.0	23.0	81.0	0.0	.	Atlas-SNP
ARHGEF1	9138	hgsc.bcm.edu	37	19	42410903	42410903	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ARHGEF1-293	NM_198977	exon27	c.G2605T	p.G869W	CAGCTTGGGGGGA	.	137.0	32.0	79.0	0.0	.	Atlas-SNP
RASIP1	54922	hgsc.bcm.edu	37	19	49227597	49227597	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	RASIP1-228	NM_017805	exon10	c.C2541A	p.L847L	CACCTTGAGCAGG	.	189.0	51.0	137.0	0.0	.	Atlas-SNP
NKG7	4818	hgsc.bcm.edu	37	19	51875493	51875493	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	NKG7-90	NM_005601	exon2	c.C226A	p.L76M	GGACCAGGAAGCT	.	98.0	5.0	80.0	0.0	.	Atlas-SNP
ZNF880	400713	hgsc.bcm.edu	37	19	52888417	52888417	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_001145434	exon4	c.C1584A	p.V528V	CAAGGTCTTCAGC	.	180.0	17.0	146.0	0.0	.	Atlas-SNP
ZNF667	63934	hgsc.bcm.edu	37	19	56952598	56952598	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ZNF667-91	NM_022103	exon5	c.G1766T	p.G589V	GCCTTCCCACATT	.	111.0	27.0	65.0	0.0	.	Atlas-SNP
ZNF419	79744	hgsc.bcm.edu	37	19	58004403	58004403	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ZNF419-90	NM_001098494	exon4	c.C382A	p.Q128K	TCCTTGCAAAGCA	.	448.0	43.0	291.0	0.0	.	Atlas-SNP
ZNF814	730051	hgsc.bcm.edu	37	19	58384936	58384936	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_001144989	exon3	c.G1822T	p.E608X	CACATTCTCCACA	.	116.0	31.0	100.0	0.0	.	Atlas-SNP
LIPE	3991	hgsc.bcm.edu	37	19	42907077	42907078	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	LIPE,NS,carcinoma,-2	LIPE-154	NM_005357	exon9	c.2649_2650insG	p.G883fs	.	.	39.0	20.0	29.0	0.0	.	Atlas-Indel
PLEKHG5	57449	hgsc.bcm.edu	37	1	6530886	6530886	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PLEKHG5-652	NM_001042664	exon14	c.C1451A	p.P484H	TGGTGGGGTTTGG	.	78.0	5.0	74.0	0.0	.	Atlas-SNP
RERE	473	hgsc.bcm.edu	37	1	8557547	8557547	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	RERE-515	NM_012102	exon10	c.G922T	p.D308Y	CTGTATCACCATC	.	177.0	73.0	258.0	1.0	.	Atlas-SNP
ANGPTL7	10218	hgsc.bcm.edu	37	1	11249964	11249964	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ANGPTL7-90	NM_021146	exon1	c.G328T	p.D110Y	CAAATTGACATCA	.	96.0	36.0	114.0	0.0	.	Atlas-SNP
KAZN	23254	hgsc.bcm.edu	37	1	15390118	15390118	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	KAZN-91	NM_201628	exon7	c.G1098T	p.Q366H	TGTACAGGTAGGT	.	87.0	35.0	98.0	0.0	.	Atlas-SNP
IFI6	2537	hgsc.bcm.edu	37	1	27995817	27995817	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	IFI6-91	NM_002038	exon2	c.G9T	p.Q3H	CGCCTTCTGCCGC	.	96.0	13.0	70.0	0.0	.	Atlas-SNP
CCDC30	728621	hgsc.bcm.edu	37	1	43055014	43055014	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CCDC30-90	NM_001080850	exon9	c.G1243T	p.D415Y	AACGTAGATGAGT	.	86.0	42.0	125.0	0.0	.	Atlas-SNP
DMAP1	55929	hgsc.bcm.edu	37	1	44685801	44685801	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	DMAP1-226	NM_001034023	exon10	c.G1164T	p.L388L	TGAGCTGCAGATG	.	200.0	13.0	153.0	0.0	.	Atlas-SNP
ELAVL4	1996	hgsc.bcm.edu	37	1	50659584	50659584	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ELAVL4-516	NM_001144774	exon4	c.G502T	p.V168F	GATCAAGTCACAG	.	170.0	68.0	181.0	0.0	.	Atlas-SNP
LEPR	3953	hgsc.bcm.edu	37	1	66098847	66098847	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	LEPR-91	NM_001003679	exon20	c.C2686A	p.L896I	GACATTCTTTGAA	.	26.0	6.0	24.0	0.0	.	Atlas-SNP
WDR63	126820	hgsc.bcm.edu	37	1	85592293	85592293	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	WDR63-95	NM_145172	exon20	c.G2212A	p.G738R	GAAGATGGATACA	.	111.0	7.0	89.0	0.0	.	Atlas-SNP
TGFBR3	7049	hgsc.bcm.edu	37	1	92187701	92187701	+	Missense_Mutation	SNP	C	C	A	rs140100898	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TGFBR3-93	NM_001195683	exon8	c.G886T	p.A296S	TAGGAGCCTGAAG	.	57.0	8.0	40.0	0.0	C|0.999;A|0.001	Atlas-SNP
AHCYL1	10768	hgsc.bcm.edu	37	1	110561730	110561730	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	AHCYL1-91	NM_001242674	exon15	c.G1234T	p.A412S	ATCACAGCCACAA	.	57.0	18.0	57.0	0.0	.	Atlas-SNP
CHIA	27159	hgsc.bcm.edu	37	1	111862838	111862838	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CHIA-91	NM_001258003	exon10	c.G857T	p.C286F	CAGGTTGCACGGC	.	80.0	9.0	103.0	0.0	.	Atlas-SNP
TBX15	6913	hgsc.bcm.edu	37	1	119427957	119427957	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TBX15-136	NM_152380	exon8	c.G889T	p.A297S	TTCGGGCACATGG	.	42.0	13.0	54.0	0.0	.	Atlas-SNP
RORC	6097	hgsc.bcm.edu	37	1	151787731	151787731	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	RORC-227	NM_001001523	exon4	c.C406A	p.Q136K	GCAGCTGCCCGTC	.	49.0	9.0	66.0	0.0	.	Atlas-SNP
KCNN3	3782	hgsc.bcm.edu	37	1	154841756	154841756	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	KCNN3-91	NM_002249	exon1	c.G685T	p.A229S	GGTGGGCATGGTT	.	87.0	14.0	120.0	0.0	.	Atlas-SNP
NTRK1	4914	hgsc.bcm.edu	37	1	156841476	156841476	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	NTRK1-1393	NM_001012331	exon7	c.G779T	p.R260M	TCAACAGGAAGAA	.	161.0	21.0	138.0	0.0	.	Atlas-SNP
TPR	7175	hgsc.bcm.edu	37	1	186301382	186301382	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TPR-228	NM_003292	exon38	c.C5549A	p.T1850K	TCCACTGTATCAT	.	78.0	4.0	107.0	0.0	.	Atlas-SNP
PLA2G4A	5321	hgsc.bcm.edu	37	1	186909138	186909138	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PLA2G4A-721	NM_024420	exon10	c.G945T	p.L315F	CAGTTTGAAGGAA	.	70.0	7.0	53.0	0.0	.	Atlas-SNP
LRRN2	10446	hgsc.bcm.edu	37	1	204588338	204588338	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	LRRN2-514	NM_201630	exon2	c.C783T	p.P261P	GAGCCCGGGCACC	.	50.0	7.0	46.0	0.0	.	Atlas-SNP
DISC1	27185	hgsc.bcm.edu	37	1	232144789	232144789	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	DISC1-91	NM_001164540	exon9	c.G1935T	p.Q645H	TGAACAGAAAGAG	.	43.0	19.0	55.0	0.0	.	Atlas-SNP
NCOA6	23054	hgsc.bcm.edu	37	20	33328359	33328359	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	NCOA6-292	NM_014071	exon11	c.G5701T	p.A1901S	GTCCTGCTGAGGC	.	38.0	22.0	41.0	0.0	.	Atlas-SNP
AURKA	6790	hgsc.bcm.edu	37	20	54961553	54961553	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	AURKA-1601	NM_198436	exon4	c.G79A	p.V27M	GAGTCACGAGAAC	.	106.0	54.0	90.0	0.0	.	Atlas-SNP
PRPF6	24148	hgsc.bcm.edu	37	20	62616311	62616311	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PRPF6-70	NM_012469	exon3	c.G292T	p.D98Y	AAAGATGATGAGG	.	55.0	10.0	78.0	0.0	.	Atlas-SNP
SYNJ1	8867	hgsc.bcm.edu	37	21	34011381	34011381	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SYNJ1-232	NM_003895	exon31	c.C3869A	p.S1290Y	AAAGAAGACTGCG	.	37.0	7.0	49.0	0.0	.	Atlas-SNP
CLDN5	7122	hgsc.bcm.edu	37	22	19511638	19511638	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CLDN5-492	NM_001130861	exon1	c.G396T	p.W132C	CCCCTTCCAGGTG	.	67.0	56.0	56.0	0.0	.	Atlas-SNP
IGLL1	3543	hgsc.bcm.edu	37	22	23915564	23915564	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	IGLL1-90	NM_020070	exon3	c.C531A	p.S177R	CAGGTAGCTGCTG	.	139.0	8.0	126.0	0.0	.	Atlas-SNP
UPB1	51733	hgsc.bcm.edu	37	22	24911294	24911294	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	UPB1-92	NM_016327	exon6	c.G747T	p.G249G	CAACGGGGCTGAG	.	97.0	5.0	152.0	0.0	.	Atlas-SNP
TEX33	339669	hgsc.bcm.edu	37	22	37397950	37397950	+	Silent	SNP	G	G	T	rs200772582	alternate_allele	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_178552	exon3	c.C162A	p.G54G	GATGCTGCCCTTC	.	112.0	25.0	171.0	0.0	G|0.999;A|0.001	Atlas-SNP
TAB1	10454	hgsc.bcm.edu	37	22	39811035	39811035	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TAB1-522	NM_153497	exon2	c.G58T	p.D20Y	ACAGATGACCTGC	.	69.0	11.0	86.0	0.0	.	Atlas-SNP
MOV10L1	54456	hgsc.bcm.edu	37	22	50552817	50552817	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MOV10L1-93	NM_001164104	exon7	c.G892T	p.G298X	AATAAAGGAGACA	.	36.0	21.0	65.0	0.0	.	Atlas-SNP
CRIM1	51232	hgsc.bcm.edu	37	2	36583544	36583544	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CRIM1-118	NM_016441	exon1	c.T109G	p.C37G	CTGGTCTGCCTGC	.	53.0	8.0	14.0	0.0	.	Atlas-SNP
SLC8A1	6546	hgsc.bcm.edu	37	2	40657111	40657111	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SLC8A1-93	NM_001112800	exon1	c.G310T	p.E104X	TGACTTCTATAGA	.	60.0	32.0	60.0	0.0	.	Atlas-SNP
SNRNP200	23020	hgsc.bcm.edu	37	2	96948949	96948949	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SNRNP200-162	NM_014014	exon34	c.C4905A	p.L1635L	GCTGAAGAGCTGC	.	68.0	22.0	74.0	0.0	.	Atlas-SNP
IL1RL1	9173	hgsc.bcm.edu	37	2	102964457	102964457	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	IL1RL1-517	NM_016232	exon9	c.G1023T	p.M341I	TTTAATGCTAATC	.	73.0	12.0	81.0	0.0	.	Atlas-SNP
TGFBRAP1	9392	hgsc.bcm.edu	37	2	105886085	105886085	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TGFBRAP1-91	NM_004257	exon11	c.C2050A	p.H684N	GGATATGCAGCGC	.	58.0	30.0	56.0	0.0	.	Atlas-SNP
AMMECR1L	83607	hgsc.bcm.edu	37	2	128631584	128631584	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	AMMECR1L-90	NM_001199140	exon3	c.C225A	p.P75P	TGTGATGGGAGAG	.	122.0	24.0	144.0	0.0	.	Atlas-SNP
CCDC74B	91409	hgsc.bcm.edu	37	2	130898834	130898834	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CCDC74B-90	NM_207310	exon4	c.C580A	p.Q194K	AATCTTGCTTGTT	.	83.0	32.0	103.0	0.0	.	Atlas-SNP
SCN9A	6335	hgsc.bcm.edu	37	2	167129186	167129186	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SCN9A-181	NM_002977	exon17	c.G3041T	p.R1014I	GCTTGTCTTATCT	.	37.0	6.0	38.0	0.0	.	Atlas-SNP
ITGA6	3655	hgsc.bcm.edu	37	2	173338941	173338941	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ITGA6-227	NM_000210	exon6	c.C934A	p.L312M	GAAGGTCTGGCCT	.	117.0	62.0	152.0	0.0	.	Atlas-SNP
WIPF1	7456	hgsc.bcm.edu	37	2	175427307	175427307	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	WIPF1-92	NM_001077269	exon8	c.G1480T	p.G494C	GAGCACCCCTTTC	.	147.0	84.0	173.0	0.0	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	37	2	179477034	179477034	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TTN-636	NM_001267550	exon266	c.G50218T	p.E16740X	AGTCCTCAATTTC	.	89.0	20.0	133.0	0.0	.	Atlas-SNP
CCDC150	284992	hgsc.bcm.edu	37	2	197541324	197541324	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_001080539	exon12	c.G1309T	p.D437Y	GCACAGGATGCTG	.	172.0	74.0	211.0	0.0	.	Atlas-SNP
INO80D	54891	hgsc.bcm.edu	37	2	206869265	206869265	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	INO80D-91	NM_017759	exon11	c.C2911A	p.Q971K	GGAGTTGCTGCTT	.	99.0	10.0	131.0	0.0	.	Atlas-SNP
ACSL3	2181	hgsc.bcm.edu	37	2	223773830	223773830	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ACSL3-228	NM_004457	exon4	c.G340T	p.E114X	AATGAGGAAGATG	.	45.0	11.0	66.0	0.0	.	Atlas-SNP
DAW1	164781	hgsc.bcm.edu	37	2	228770995	228770995	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_178821	exon9	c.G799A	p.A267T	AGCAGTGCCTCAT	.	36.0	5.0	65.0	0.0	.	Atlas-SNP
EIF4E2	9470	hgsc.bcm.edu	37	2	233431658	233431658	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	EIF4E2-90	NM_004846	exon5	c.G495T	p.E165D	GGAGGAGATCTGT	.	65.0	36.0	82.0	0.0	.	Atlas-SNP
UGT1A3	54659	hgsc.bcm.edu	37	2	234638397	234638397	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	UGT1A3-24	NM_019093	exon1	c.C625A	p.Q209K	TTCATGCAAAGGG	.	215.0	50.0	284.0	0.0	.	Atlas-SNP
IRAK2	3656	hgsc.bcm.edu	37	3	10255048	10255048	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	IRAK2-574	NM_001570	exon5	c.G686T	p.R229M	GGCACAGGCACGG	.	67.0	4.0	92.0	0.0	.	Atlas-SNP
PTPN23	25930	hgsc.bcm.edu	37	3	47454406	47454406	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PTPN23-227	NM_015466	exon25	c.C4642A	p.L1548I	CCCCCCCTTTCCT	.	30.0	16.0	27.0	0.0	.	Atlas-SNP
DENND6A	201627	hgsc.bcm.edu	37	3	57616535	57616535	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_152678	exon17	c.G1424T	p.R475I	AACTGTCTTAATT	.	29.0	6.0	26.0	0.0	.	Atlas-SNP
CPB1	1360	hgsc.bcm.edu	37	3	148575243	148575243	+	Splice_Site	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CPB1-92	NM_001871	exon10	c.982-1G>T	.	TTTGCAGAATGCC	.	83.0	7.0	93.0	0.0	.	Atlas-SNP
B3GALNT1	8706	hgsc.bcm.edu	37	3	160804280	160804280	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	B3GALNT1-91	NM_033168	exon4	c.C263A	p.P88H	TCTGAAGGGTGGG	.	46.0	22.0	36.0	0.0	.	Atlas-SNP
TTC14	151613	hgsc.bcm.edu	37	3	180324359	180324359	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TTC14-91	NM_133462	exon9	c.C1140A	p.Y380X	AAAATACCTCTGC	.	91.0	9.0	100.0	0.0	.	Atlas-SNP
EHHADH	1962	hgsc.bcm.edu	37	3	184910464	184910464	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	EHHADH-93	NM_001166415	exon7	c.G1434T	p.K478N	ACCTGTCTTCTGG	.	89.0	30.0	93.0	0.0	.	Atlas-SNP
CEP19	84984	hgsc.bcm.edu	37	3	196434499	196434499	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CEP19-69	NM_032898	exon3	c.G427T	p.D143Y	CAATGTCATAAAC	.	47.0	17.0	83.0	0.0	.	Atlas-SNP
CRIPAK	285464	hgsc.bcm.edu	37	4	1388755	1388755	+	Silent	SNP	C	C	G	rs141481663	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CRIPAK-90	NM_175918	exon1	c.C456G	p.P152P	CGTGCCCATGCGG	.	113.0	16.0	8.0	0.0	C|0.960;G|0.040	Atlas-SNP
OTOP1	133060	hgsc.bcm.edu	37	4	4228456	4228456	+	Silent	SNP	G	G	T	rs73191872	bycluster;by1000genomes	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	OTOP1-92	NM_177998	exon1	c.C136A	p.R46R	CGCCCCGCCGGGG	.	53.0	20.0	9.0	0.0	.	Atlas-SNP
DEFB131	644414	hgsc.bcm.edu	37	4	9452101	9452101	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	DEFB131-68	NM_001040448	exon2	c.C74A	p.S25Y	TCATTTCTAATGA	.	224.0	40.0	252.0	0.0	.	Atlas-SNP
TBC1D1	23216	hgsc.bcm.edu	37	4	37903767	37903767	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TBC1D1-91	NM_001253912	exon2	c.C51A	p.V17V	CGAGGTCTCGGTG	.	177.0	47.0	111.0	0.0	.	Atlas-SNP
CORIN	10699	hgsc.bcm.edu	37	4	47746504	47746504	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CORIN-91	NM_006587	exon5	c.C714A	p.L238L	GCATCTGAGGAAA	.	117.0	12.0	85.0	0.0	.	Atlas-SNP
SLC4A4	8671	hgsc.bcm.edu	37	4	72363343	72363343	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SLC4A4-95	NM_001134742	exon16	c.C2100A	p.F700L	CCTCTTCTTGGGA	.	131.0	11.0	92.0	0.0	.	Atlas-SNP
ANKRD17	26057	hgsc.bcm.edu	37	4	73941997	73941997	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ANKRD17-234	NM_198889	exon33	c.G7010C	p.G2337A	CAGGGTCCAGTCC	.	200.0	11.0	142.0	0.0	.	Atlas-SNP
CXCL1	2919	hgsc.bcm.edu	37	4	74735403	74735403	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CXCL1-204	NM_001511	exon2	c.G118T	p.E40X	GCCACTGAACTGC	.	221.0	71.0	164.0	0.0	.	Atlas-SNP
CENPE	1062	hgsc.bcm.edu	37	4	104082566	104082566	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CENPE-277	NM_001813	exon19	c.G1891T	p.E631X	CAGTTTCAGCATC	.	138.0	15.0	125.0	0.0	.	Atlas-SNP
ARHGEF38	54848	hgsc.bcm.edu	37	4	106534599	106534599	+	Nonsense_Mutation	SNP	C	C	A	rs61751053	byfrequency;alternate_allele	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ARHGEF38-292	NM_001242729	exon3	c.C443A	p.S148X	AGATATCAGCCAA	.	98.0	15.0	111.0	0.0	C|0.995;T|0.005	Atlas-SNP
HADH	3033	hgsc.bcm.edu	37	4	108944697	108944697	+	Missense_Mutation	SNP	G	G	T	rs144699575	byfrequency;alternate_allele	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	HADH-91	NM_001184705	exon5	c.G614T	p.G205V	CCCTAGGAAAGCA	.	131.0	17.0	108.0	0.0	G|0.999;C|0.001	Atlas-SNP
ENPEP	2028	hgsc.bcm.edu	37	4	111441505	111441505	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ENPEP-157	NM_001977	exon10	c.G1710T	p.Q570H	TTCTCAGCCCCCT	.	165.0	14.0	141.0	0.0	.	Atlas-SNP
USP53	54532	hgsc.bcm.edu	37	4	120182880	120182880	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	USP53-660	NM_019050	exon11	c.G833T	p.R278I	TTTATAGAGTTAC	.	97.0	19.0	92.0	0.0	.	Atlas-SNP
ANXA5	308	hgsc.bcm.edu	37	4	122607510	122607510	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ANXA5-91	NM_001154	exon3	c.G27T	p.V9V	GTCAGTCACAGTG	.	68.0	9.0	65.0	0.0	.	Atlas-SNP
FAT4	79633	hgsc.bcm.edu	37	4	126329878	126329878	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	FAT4-108	NM_024582	exon4	c.G5849T	p.S1950I	CATACAGCACATC	.	105.0	22.0	84.0	0.0	.	Atlas-SNP
FAT4	79633	hgsc.bcm.edu	37	4	126329907	126329907	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	FAT4-108	NM_024582	exon4	c.G5878T	p.G1960X	CCTGTGGGATCTA	.	86.0	33.0	76.0	0.0	.	Atlas-SNP
TTC29	83894	hgsc.bcm.edu	37	4	147830262	147830262	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TTC29-90	NM_031956	exon5	c.C316A	p.L106M	TCTGCAGCCAGAA	.	53.0	15.0	55.0	0.0	.	Atlas-SNP
PDLIM3	27295	hgsc.bcm.edu	37	4	186427748	186427748	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PDLIM3-92	NM_001257963	exon3	c.C220A	p.R74R	CATTCCGATTGTC	.	61.0	13.0	47.0	0.0	.	Atlas-SNP
FAT1	2195	hgsc.bcm.edu	37	4	187534440	187534440	+	Missense_Mutation	SNP	G	G	T	rs200812915	alternate_allele	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	FAT1-34	NM_005245	exon13	c.C9286A	p.L3096I	TGACGAGAAGATG	.	109.0	37.0	97.0	0.0	G|0.999;C|0.000	Atlas-SNP
FAT1	2195	hgsc.bcm.edu	37	4	187629193	187629193	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	FAT1-34	NM_005245	exon2	c.G1789T	p.D597Y	GTTCATCTGCATC	.	43.0	27.0	42.0	0.0	.	Atlas-SNP
SLC9A3	6550	hgsc.bcm.edu	37	5	480044	480044	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SLC9A3-90	NM_004174	exon10	c.C1554A	p.V518V	CATGAGGACCCTG	.	124.0	15.0	80.0	0.0	.	Atlas-SNP
CCT5	22948	hgsc.bcm.edu	37	5	10258587	10258587	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CCT5-92	NM_012073	exon6	c.C813A	p.V271V	CTCTGTCGAAGAT	.	244.0	34.0	206.0	0.0	.	Atlas-SNP
RICTOR	253260	hgsc.bcm.edu	37	5	38966809	38966809	+	Silent	SNP	C	C	A	rs149142099	byfrequency;alternate_allele	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	RICTOR-849	NM_152756	exon15	c.G1233T	p.V411V	TGTTATCACTTCA	.	170.0	17.0	102.0	0.0	C|1.000;T|0.000	Atlas-SNP
MSH3	4437	hgsc.bcm.edu	37	5	79950715	79950715	+	Missense_Mutation	SNP	G	G	C	rs144776112		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MSH3-661	NM_002439	exon1	c.G169C	p.A57P	GCAGCGGCCGCAG	.	22.0	13.0	6.0	0.0	G|0.834;C|0.166	Atlas-SNP
GPR98	84059	hgsc.bcm.edu	37	5	89923239	89923239	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	GPR98-103	NM_032119	exon7	c.G884T	p.G295V	TGATTGGATCTGA	.	168.0	23.0	173.0	0.0	.	Atlas-SNP
CCNI2	645121	hgsc.bcm.edu	37	5	132087879	132087879	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CCNI2-68	NM_001039780	exon5	c.G996T	p.K332N	GCTAAAGAAAGCA	.	157.0	18.0	111.0	0.0	.	Atlas-SNP
SEPT8	23176	hgsc.bcm.edu	37	5	132097158	132097158	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SEPT8-70	NM_001098813	exon7	c.G774T	p.Q258H	GAAGGGCTGGCTG	.	60.0	6.0	48.0	0.0	.	Atlas-SNP
AFF4	27125	hgsc.bcm.edu	37	5	132272803	132272803	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	AFF4-229	NM_014423	exon2	c.G79A	p.A27T	GGAAGGCGTCTTC	.	150.0	10.0	129.0	0.0	.	Atlas-SNP
PCDHA6	56142	hgsc.bcm.edu	37	5	140207893	140207893	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PCDHA6-92	NM_018909	exon1	c.G217T	p.D73Y	CGCGAGGACCTTC	.	162.0	12.0	114.0	0.0	.	Atlas-SNP
ARHGAP26	23092	hgsc.bcm.edu	37	5	142264925	142264925	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ARHGAP26-660	NM_015071	exon5	c.G447T	p.L149F	ACACTTGAATTTG	.	296.0	75.0	239.0	0.0	.	Atlas-SNP
RANBP17	64901	hgsc.bcm.edu	37	5	170668124	170668124	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	RANBP17-524	NM_022897	exon23	c.C2615A	p.S872X	TGCTGTCAGTGTC	.	110.0	29.0	84.0	0.0	.	Atlas-SNP
HIVEP1	3096	hgsc.bcm.edu	37	6	12121200	12121200	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	HIVEP1-139	NM_002114	exon4	c.G1172T	p.C391F	AAATGTGCAATCT	.	82.0	19.0	77.0	0.0	.	Atlas-SNP
HIVEP1	3096	hgsc.bcm.edu	37	6	12163624	12163624	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	HIVEP1-139	NM_002114	exon9	c.C7087A	p.Q2363K	CAGAAGCAGCAAA	.	93.0	20.0	79.0	0.0	.	Atlas-SNP
ABCF1	23	hgsc.bcm.edu	37	6	30552279	30552279	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ABCF1-92	NM_001025091	exon14	c.G1327T	p.E443X	GACCCTGAAATGC	.	79.0	9.0	79.0	0.0	.	Atlas-SNP
BTBD9	114781	hgsc.bcm.edu	37	6	38561778	38561778	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	BTBD9-226	NM_001172418	exon2	c.G334T	p.E112X	GGACTTCCTGAGC	.	187.0	34.0	134.0	0.0	.	Atlas-SNP
PPP2R5D	5528	hgsc.bcm.edu	37	6	42957364	42957364	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PPP2R5D-1082	NM_006245	exon2	c.G43T	p.A15S	AAGGTTGCCAAAT	.	81.0	12.0	57.0	0.0	.	Atlas-SNP
CYP39A1	51302	hgsc.bcm.edu	37	6	46607338	46607338	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CYP39A1-91	NM_016593	exon3	c.G381T	p.M127I	AGTCCCCATTTTC	.	121.0	35.0	109.0	0.0	.	Atlas-SNP
OPN5	221391	hgsc.bcm.edu	37	6	47754293	47754293	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	OPN5-69	NM_181744	exon2	c.C173A	p.S58Y	ACATGTCTTCTAG	.	119.0	15.0	98.0	0.0	.	Atlas-SNP
GLYATL3	389396	hgsc.bcm.edu	37	6	49485158	49485158	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_001010904	exon4	c.C202A	p.L68I	GATAACCTTGATC	.	149.0	12.0	118.0	0.0	.	Atlas-SNP
PKHD1	5314	hgsc.bcm.edu	37	6	51612798	51612798	+	Missense_Mutation	SNP	C	C	A	rs141507554		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PKHD1-603	NM_170724	exon58	c.G9616T	p.V3206L	TGGCCACAATGAC	.	178.0	22.0	127.0	0.0	C|1.000;A|0.000	Atlas-SNP
COL21A1	81578	hgsc.bcm.edu	37	6	56033011	56033011	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	COL21A1-24	NM_030820	exon6	c.G1111T	p.E371X	TGTTTTCAATTTG	.	78.0	12.0	58.0	0.0	.	Atlas-SNP
LGSN	51557	hgsc.bcm.edu	37	6	63991038	63991038	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	LGSN-227	NM_001143940	exon4	c.G418T	p.A140S	ATGTGGCTCTTAT	.	126.0	42.0	111.0	0.0	.	Atlas-SNP
EYS	346007	hgsc.bcm.edu	37	6	65301109	65301109	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	EYS-660	NM_001142800	exon26	c.G4651T	p.E1551X	TTAATTCTCTTAA	.	117.0	19.0	85.0	0.0	.	Atlas-SNP
MB21D1	115004	hgsc.bcm.edu	37	6	74161347	74161347	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MB21D1-90	NM_138441	exon1	c.G558T	p.V186V	CCCTTTCACCATC	.	299.0	19.0	211.0	0.0	.	Atlas-SNP
SNAP91	9892	hgsc.bcm.edu	37	6	84292059	84292059	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SNAP91-23	NM_001242792	exon22	c.C2031A	p.F677L	CGCCATGAAAGAA	.	47.0	12.0	59.0	0.0	.	Atlas-SNP
SIM1	6492	hgsc.bcm.edu	37	6	100898139	100898139	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SIM1-94	NM_005068	exon3	c.G352T	p.E118X	ACTCACCTACCTG	.	84.0	7.0	59.0	0.0	.	Atlas-SNP
GRIK2	2898	hgsc.bcm.edu	37	6	102503296	102503296	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	GRIK2,NS,NS,+1	GRIK2-157	NM_021956	exon15	c.C2403A	p.G801G	GAGGGGCAATGGT	.	145.0	45.0	94.0	0.0	.	Atlas-SNP
GOPC	57120	hgsc.bcm.edu	37	6	117923266	117923266	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	GOPC-676	NM_020399	exon1	c.C186A	p.I62I	ATAAGTGATGTCC	.	114.0	20.0	95.0	0.0	.	Atlas-SNP
FAM184A	79632	hgsc.bcm.edu	37	6	119285913	119285913	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	FAM184A-519	NM_024581	exon16	c.G3057T	p.L1019L	TAATTCCAGCTGA	.	66.0	12.0	62.0	0.0	.	Atlas-SNP
MED23	9439	hgsc.bcm.edu	37	6	131927695	131927695	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MED23-24	NM_015979	exon14	c.C1309A	p.H437N	TGAGATGAATCCA	.	166.0	33.0	160.0	0.0	.	Atlas-SNP
MYB	4602	hgsc.bcm.edu	37	6	135513461	135513461	+	Splice_Site	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MYB-838	NM_001161660	exon6	c.528-1G>T	.	TGTGCAGAACTGA	.	83.0	8.0	56.0	0.0	.	Atlas-SNP
AKAP12	9590	hgsc.bcm.edu	37	6	151647016	151647016	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	AKAP12-293	NM_144497	exon1	c.C21A	p.I7I	CACCATCACAGGT	.	70.0	12.0	50.0	0.0	.	Atlas-SNP
TIAM2	26230	hgsc.bcm.edu	37	6	155566830	155566830	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TIAM2-93	NM_012454	exon18	c.C3617A	p.A1206D	TCTGTGCTAACCA	.	70.0	16.0	46.0	0.0	.	Atlas-SNP
SLC22A2	6582	hgsc.bcm.edu	37	6	160663410	160663410	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SLC22A2-154	NM_003058	exon8	c.T1304C	p.I435T	CATGAGATAATAA	.	114.0	20.0	124.0	0.0	.	Atlas-SNP
SLC22A2	6582	hgsc.bcm.edu	37	6	160663414	160663438	+	Frame_Shift_Del	DEL	TAATTTTTAGCCATTGTAGATCTAA	TAATTTTTAGCCATTGTAGATCTAA	-	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	TAATTTTTAGCCATTGTAGATCTAA	TAATTTTTAGCCATTGTAGATCTAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SLC22A2-154	NM_003058	exon8	c.1280_1301del	p.427_434del	.	.	100.0	19.0	97.0	0.0	.	Pindel
AMZ1	155185	hgsc.bcm.edu	37	7	2752257	2752257	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	AMZ1-90	NM_133463	exon7	c.C1242A	p.C414X	CATGTGCATCCAG	.	194.0	20.0	81.0	0.0	.	Atlas-SNP
MACC1	346389	hgsc.bcm.edu	37	7	20180669	20180669	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MACC1-93	NM_182762	exon7	c.C2459G	p.P820R	GTCACAGGGTTTT	.	78.0	16.0	39.0	0.0	.	Atlas-SNP
NUPL2	11097	hgsc.bcm.edu	37	7	23240027	23240027	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	NUPL2-228	NM_007342	exon7	c.G935T	p.G312V	GTTTTGGATCACC	.	167.0	16.0	82.0	0.0	.	Atlas-SNP
BBS9	27241	hgsc.bcm.edu	37	7	33423320	33423320	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	BBS9-230	NM_001033605	exon17	c.T1817C	p.L606P	TTTGGCTCATAAC	.	104.0	15.0	54.0	0.0	.	Atlas-SNP
SEPT14	346288	hgsc.bcm.edu	37	7	55910667	55910667	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_207366	exon5	c.G526T	p.D176Y	ATAGATCAAGAGA	.	218.0	13.0	167.0	0.0	.	Atlas-SNP
ZNF680	340252	hgsc.bcm.edu	37	7	63982292	63982292	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ZNF680-91	NM_178558	exon4	c.C840A	p.I280I	ACTAAGGATTGAG	.	33.0	7.0	23.0	0.0	.	Atlas-SNP
AUTS2	26053	hgsc.bcm.edu	37	7	70255405	70255405	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	AUTS2-92	NM_015570	exon19	c.G3203T	p.W1068L	TCCACTGGGACCC	.	76.0	7.0	51.0	0.0	.	Atlas-SNP
MAGI2	9863	hgsc.bcm.edu	37	7	77764344	77764344	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MAGI2-461	NM_012301	exon17	c.C3025A	p.Q1009K	CCTCCTGAGGAAT	.	189.0	45.0	132.0	0.0	.	Atlas-SNP
MAGI2	9863	hgsc.bcm.edu	37	7	77814971	77814971	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MAGI2-461	NM_012301	exon13	c.G2286T	p.R762S	ACTGGTCCTGGGT	.	177.0	18.0	148.0	0.0	.	Atlas-SNP
GRM3	2913	hgsc.bcm.edu	37	7	86394717	86394717	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	GRM3-528	NM_000840	exon2	c.C256A	p.L86I	TACTTGCTACCAG	.	153.0	17.0	107.0	0.0	.	Atlas-SNP
GTPBP10	85865	hgsc.bcm.edu	37	7	90003657	90003657	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	GTPBP10-68	NM_033107	exon6	c.G580T	p.D194Y	TACAGTGATTTCA	.	69.0	15.0	57.0	0.0	.	Atlas-SNP
LRRD1	401387	hgsc.bcm.edu	37	7	91792948	91792948	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_001161528	exon1	c.C1569T	p.L523L	AAATATGAGGAGT	.	92.0	7.0	41.0	0.0	.	Atlas-SNP
KRIT1	889	hgsc.bcm.edu	37	7	91864777	91864777	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	KRIT1-132	NM_194455	exon8	c.G669T	p.E223D	TGCTTTCTCTAGG	.	99.0	13.0	74.0	0.0	.	Atlas-SNP
PTCD1	26024	hgsc.bcm.edu	37	7	99023158	99023158	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PTCD1-91	NM_015545	exon6	c.G997T	p.G333C	CTAGGCCACAGTC	.	94.0	25.0	78.0	0.0	.	Atlas-SNP
RELN	5649	hgsc.bcm.edu	37	7	103180836	103180836	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	RELN-574	NM_005045	exon44	c.G6738T	p.V2246V	TAGGAGCACGGGT	.	107.0	37.0	55.0	0.0	.	Atlas-SNP
IFRD1	3475	hgsc.bcm.edu	37	7	112090794	112090794	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	IFRD1,brain,glioma,+1	IFRD1-91	NM_001550	exon1	c.C51A	p.G17G	TGCTGGCGGCGGC	.	283.0	42.0	97.0	0.0	.	Atlas-SNP
POT1	25913	hgsc.bcm.edu	37	7	124491967	124491967	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	POT1-227	NM_001042594	exon10	c.C515A	p.S172X	ACATCTGAATGCT	.	185.0	47.0	151.0	0.0	.	Atlas-SNP
SND1	27044	hgsc.bcm.edu	37	7	127631020	127631020	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SND1-92	NM_014390	exon16	c.G1690T	p.A564S	AGAGGAGCCCGAA	.	109.0	33.0	80.0	0.0	.	Atlas-SNP
PARP12	64761	hgsc.bcm.edu	37	7	139727101	139727101	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PARP12-525	NM_022750	exon10	c.C1603A	p.L535M	GGGCCAGGTTCTG	.	184.0	46.0	169.0	0.0	.	Atlas-SNP
SSPO	23145	hgsc.bcm.edu	37	7	149499235	149499235	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_198455	exon51	c.G7603T	p.G2535C	CCAGGGGGCAGCT	.	68.0	5.0	23.0	0.0	.	Atlas-SNP
MLL3	58508	hgsc.bcm.edu	37	7	151879463	151879463	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MLL3-1398	NM_170606	exon36	c.G5482T	p.E1828X	ACAGTTCTTTATG	.	158.0	41.0	142.0	0.0	.	Atlas-SNP
EFHA2	286097	hgsc.bcm.edu	37	8	16944544	16944544	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	EFHA2-91	NM_181723	exon7	c.G849T	p.L283L	AATGCTGGTAAGA	.	28.0	5.0	57.0	0.0	.	Atlas-SNP
PCMTD1	115294	hgsc.bcm.edu	37	8	52744112	52744112	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PCMTD1-68	NM_052937	exon5	c.C598A	p.R200R	CAGTTCGCATAAT	.	38.0	7.0	40.0	0.0	.	Atlas-SNP
TRPA1	8989	hgsc.bcm.edu	37	8	72973992	72973992	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TRPA1-230	NM_007332	exon7	c.G812T	p.G271V	CACCTTCCCTTCT	.	93.0	7.0	118.0	0.0	.	Atlas-SNP
RMDN1	51115	hgsc.bcm.edu	37	8	87519275	87519275	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_016033	exon2	c.G196T	p.E66X	AAGTTTCAAAACC	.	78.0	34.0	92.0	0.0	.	Atlas-SNP
KIAA1429	25962	hgsc.bcm.edu	37	8	95538629	95538629	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	KIAA1429-92	NM_015496	exon8	c.G1843T	p.E615X	AGGATTCCAAAAG	.	59.0	8.0	66.0	0.0	.	Atlas-SNP
GDF6	392255	hgsc.bcm.edu	37	8	97157039	97157039	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	GDF6-228	NM_001001557	exon2	c.G1120A	p.A374T	GGGGCGCGATAAT	.	159.0	10.0	140.0	0.0	.	Atlas-SNP
VPS13B	157680	hgsc.bcm.edu	37	8	100733234	100733234	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	VPS13B-301	NM_152564	exon39	c.G7009T	p.D2337Y	ACAGAGGATCCAG	.	84.0	35.0	71.0	0.0	.	Atlas-SNP
TRPS1	7227	hgsc.bcm.edu	37	8	116632191	116632191	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TRPS1-229	NM_014112	exon3	c.G134T	p.G45V	TTCTTTCCAGATA	.	85.0	36.0	109.0	0.0	.	Atlas-SNP
SLC1A1	6505	hgsc.bcm.edu	37	9	4583052	4583052	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SLC1A1-514	NM_004170	exon11	c.C1208A	p.S403Y	CCACATCTGCCAG	.	103.0	17.0	102.0	0.0	.	Atlas-SNP
RANBP6	26953	hgsc.bcm.edu	37	9	6013222	6013222	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	RANBP6-229	NM_001243202	exon2	c.G1330T	p.E444X	AGTGTTCATCATT	.	83.0	24.0	64.0	0.0	.	Atlas-SNP
LURAP1L	286343	hgsc.bcm.edu	37	9	12775864	12775864	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_203403	exon1	c.C150T	p.G50G	TGGTGGCGGCGGC	.	51.0	7.0	23.0	0.0	.	Atlas-SNP
MPDZ	8777	hgsc.bcm.edu	37	9	13176296	13176296	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MPDZ-231	NM_001261406	exon20	c.G2770T	p.G924W	CAGGCCCCATACT	.	137.0	11.0	108.0	0.0	.	Atlas-SNP
MPDZ	8777	hgsc.bcm.edu	37	9	13188983	13188983	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MPDZ-231	NM_001261406	exon17	c.G2164T	p.D722Y	CTGGATCAATTGG	.	74.0	16.0	54.0	0.0	.	Atlas-SNP
ACO1	48	hgsc.bcm.edu	37	9	32430444	32430444	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ACO1-226	NM_002197	exon14	c.C1598A	p.S533Y	TACTATCTGGAAA	.	180.0	20.0	125.0	0.0	.	Atlas-SNP
TPM2	7169	hgsc.bcm.edu	37	9	35682151	35682151	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TPM2-515	NM_213674	exon9	c.C782A	p.A261D	GCACTGGCCAAGG	.	115.0	23.0	75.0	0.0	.	Atlas-SNP
MAMDC2	256691	hgsc.bcm.edu	37	9	72741314	72741314	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MAMDC2-91	NM_153267	exon6	c.G883T	p.A295S	TTCAGTGCTCCTT	.	131.0	25.0	86.0	0.0	.	Atlas-SNP
GALNT12	79695	hgsc.bcm.edu	37	9	101606450	101606450	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	GALNT12-92	NM_024642	exon8	c.C1417A	p.Q473K	GGACACCAGGTCA	.	122.0	8.0	103.0	0.0	.	Atlas-SNP
OR13C5	138799	hgsc.bcm.edu	37	9	107361140	107361140	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	OR13C5-72	NM_001004482	exon1	c.G555T	p.M185I	CAGTTTCATGACA	.	451.0	51.0	376.0	0.0	.	Atlas-SNP
C9orf84	158401	hgsc.bcm.edu	37	9	114508596	114508596	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	C9orf84-92	NM_173521	exon8	c.C805A	p.L269I	GGAATAGAGGAGT	.	75.0	15.0	58.0	0.0	.	Atlas-SNP
PHF19	26147	hgsc.bcm.edu	37	9	123624881	123624881	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PHF19-136	NM_015651	exon11	c.G1115T	p.G372V	CTCTTTCCTCTCT	.	105.0	24.0	91.0	0.0	.	Atlas-SNP
STXBP1	6812	hgsc.bcm.edu	37	9	130427557	130427557	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	STXBP1-91	NM_003165	exon8	c.C610A	p.L204I	GCTCAGCTAATCC	.	133.0	22.0	140.0	0.0	.	Atlas-SNP
TBC1D13	54662	hgsc.bcm.edu	37	9	131559410	131559410	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TBC1D13-90	NM_018201	exon7	c.G460T	p.E154X	CAGAATGAGTTTG	.	133.0	39.0	98.0	0.0	.	Atlas-SNP
RAPGEF1	2889	hgsc.bcm.edu	37	9	134501621	134501621	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	RAPGEF1-849	NM_198679	exon10	c.G1393T	p.G465W	GCTGCCCTGGGGC	.	172.0	51.0	128.0	0.0	.	Atlas-SNP
ARSH	347527	hgsc.bcm.edu	37	X	2942061	2942061	+	Splice_Site	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ARSH-130	NM_001011719	exon6	c.902-1G>T	.	TCTCCAGGTAAAA	.	272.0	59.0	205.0	0.0	.	Atlas-SNP
WWC3	55841	hgsc.bcm.edu	37	X	10106875	10106875	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	WWC3-134	NM_015691	exon21	c.C2983A	p.Q995K	CTGCGGCAGCGGT	.	239.0	60.0	119.0	0.0	.	Atlas-SNP
DDX53	168400	hgsc.bcm.edu	37	X	23019100	23019100	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	DDX53-228	NM_182699	exon1	c.C926A	p.A309D	AGTTGGCTCTTCA	.	257.0	57.0	187.0	0.0	.	Atlas-SNP
MAGEB10	139422	hgsc.bcm.edu	37	X	27840275	27840275	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MAGEB10-130	NM_182506	exon3	c.C852A	p.S284R	AACCAGCAAGATG	.	116.0	15.0	80.0	0.0	.	Atlas-SNP
MED14	9282	hgsc.bcm.edu	37	X	40568698	40568698	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MED14-289	NM_004229	exon10	c.C1187A	p.S396X	TCTATTGATAAGT	.	141.0	16.0	98.0	0.0	.	Atlas-SNP
TBC1D25	4943	hgsc.bcm.edu	37	X	48417292	48417292	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	TBC1D25,NS,carcinoma,-2	TBC1D25-131	NM_002536	exon4	c.G396T	p.L132F	CCCATTGCTAGAA	.	232.0	16.0	184.0	1.0	.	Atlas-SNP
HUWE1	10075	hgsc.bcm.edu	37	X	53607986	53607986	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	HUWE1-280	NM_031407	exon43	c.G5521T	p.V1841F	GAACAACCTAGTA	.	129.0	21.0	87.0	0.0	.	Atlas-SNP
YIPF6	286451	hgsc.bcm.edu	37	X	67741213	67741213	+	Splice_Site	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	YIPF6-130	NM_001195214	exon4	c.180-1G>T	.	TTCTCAGAATGCT	.	153.0	82.0	84.0	0.0	.	Atlas-SNP
MED12	9968	hgsc.bcm.edu	37	X	70352313	70352313	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MED12-272	NM_005120	exon31	c.C4340A	p.A1447D	AGGCTGCTGGGGA	.	301.0	29.0	219.0	0.0	.	Atlas-SNP
TAF1	6872	hgsc.bcm.edu	37	X	70596893	70596893	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TAF1-900	NM_138923	exon5	c.C563A	p.S188X	CTGACTCAGAATC	.	211.0	43.0	139.0	0.0	.	Atlas-SNP
TAF1	6872	hgsc.bcm.edu	37	X	70598293	70598293	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TAF1-900	NM_138923	exon7	c.G1139T	p.R380I	AATCTAGAATGAT	.	202.0	12.0	169.0	0.0	.	Atlas-SNP
CDX4	1046	hgsc.bcm.edu	37	X	72667507	72667507	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CDX4-130	NM_005193	exon1	c.G418T	p.D140Y	CCGACGGACGCAG	.	78.0	12.0	25.0	0.0	.	Atlas-SNP
DRP2	1821	hgsc.bcm.edu	37	X	100500030	100500030	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	DRP2-132	NM_001939	exon10	c.G1079T	p.R360I	GGGAAAGAGCAAT	.	315.0	42.0	218.0	0.0	.	Atlas-SNP
VSIG1	340547	hgsc.bcm.edu	37	X	107320376	107320376	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	VSIG1-132	NM_182607	exon7	c.C929A	p.T310N	ATGAGACTGGCCC	.	296.0	62.0	157.0	0.0	.	Atlas-SNP
IGSF1	3547	hgsc.bcm.edu	37	X	130411109	130411109	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	IGSF1-133	NM_001170962	exon13	c.G2385T	p.Q795H	CATATGCTGGTGG	.	136.0	10.0	84.0	0.0	.	Atlas-SNP
TFDP3	51270	hgsc.bcm.edu	37	X	132352122	132352122	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TFDP3-131	NM_016521	exon1	c.C166A	p.Q56K	CCACTTGCTGGTC	.	234.0	23.0	170.0	0.0	.	Atlas-SNP
ATP2B3	492	hgsc.bcm.edu	37	X	152827696	152827696	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ATP2B3-109	NM_021949	exon18	c.G3155T	p.G1052V	TCTGGGGACAGGT	.	124.0	32.0	79.0	0.0	.	Atlas-SNP
