Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Algorithm
ITGA8	8516	hgsc.bcm.edu	37	10	15761654	15761654	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ITGA8-230	NM_003638	exon1	c.C117T	p.F39F	CAGGTTGAACGCC	.	44.0	14.0	16.0	0.0	.	Atlas-SNP
ANK3	288	hgsc.bcm.edu	37	10	61847904	61847904	+	Splice_Site	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ANK3-107	NM_001149	exon8	c.942+1G>T	.	ACATTACCTGGAG	.	58.0	24.0	47.0	0.0	.	Atlas-SNP
HKDC1	80201	hgsc.bcm.edu	37	10	71018532	71018532	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	HKDC1-95	NM_025130	exon15	c.G2033A	p.G678E	TTCTAGGAACAGG	.	99.0	30.0	79.0	0.0	.	Atlas-SNP
LRIT2	340745	hgsc.bcm.edu	37	10	85982398	85982398	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	LRIT2-92	NM_001017924	exon3	c.G931T	p.E311X	CCAGCTCTGACAG	.	364.0	137.0	247.0	0.0	.	Atlas-SNP
PLCE1	51196	hgsc.bcm.edu	37	10	96084321	96084321	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	PLCE1-229	NM_001165979	exon30	c.G5793A	p.V1931V	GCAGGTGCAGGTA	.	90.0	33.0	72.0	0.0	.	Atlas-SNP
HSPA12A	259217	hgsc.bcm.edu	37	10	118451896	118451896	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	HSPA12A-206	NM_025015	exon6	c.C629G	p.P210R	TTGGCCGGCTGCT	.	141.0	57.0	75.0	0.0	.	Atlas-SNP
C10orf120	399814	hgsc.bcm.edu	37	10	124457937	124457937	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	C10orf120-91	NM_001010912	exon3	c.G320C	p.R107T	AGCATTCTGCATT	.	184.0	68.0	106.0	0.0	.	Atlas-SNP
FBXO18	84893	hgsc.bcm.edu	37	10	5979171	5979172	+	Frame_Shift_Del	DEL	GC	GC	-	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	FBXO18-228	NM_001258453	exon22	c.2837_2838del	p.946_946del	.	.	237.0	76.0	180.0	0.0	.	Atlas-Indel
MUC5B	727897	hgsc.bcm.edu	37	11	1253980	1253980	+	Missense_Mutation	SNP	A	A	G	rs202127660		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	.	NM_002458	exon17	c.A2045G	p.D682G	TCAGCGACTGGAG	.	128.0	16.0	31.0	0.0	.	Atlas-SNP
NUP98	4928	hgsc.bcm.edu	37	11	3752722	3752722	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	NUP98-703	NM_005387	exon14	c.C1680A	p.V560V	TGGCCGGACTCTA	.	133.0	56.0	108.0	0.0	.	Atlas-SNP
OR51E1	143503	hgsc.bcm.edu	37	11	4674519	4674519	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	OR51E1-114	NM_152430	exon2	c.G763T	p.V255L	TTCTATGTACCTT	.	147.0	41.0	107.0	0.0	.	Atlas-SNP
OR52E6	390078	hgsc.bcm.edu	37	11	5862980	5862980	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	OR52E6-68	NM_001005167	exon1	c.G148T	p.V50L	GGATCACAAAGAA	.	257.0	61.0	157.0	0.0	.	Atlas-SNP
OR52L1	338751	hgsc.bcm.edu	37	11	6007764	6007764	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	OR52L1-91	NM_001005173	exon1	c.C397A	p.L133I	CCACAAGTACCCC	.	242.0	75.0	154.0	0.0	.	Atlas-SNP
SMPD1	6609	hgsc.bcm.edu	37	11	6413009	6413009	+	Silent	SNP	A	A	C	rs2682091	byfrequency;alternate_allele	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SMPD1-90	NM_001007593	exon2	c.A711C	p.A237A	GCCCGCATCCCGG	.	62.0	5.0	11.0	0.0	A|0.960;G|0.040	Atlas-SNP
CALCA	796	hgsc.bcm.edu	37	11	14991506	14991506	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CALCA-514	NM_001741	exon3	c.C202G	p.Q68E	GCTCCTGCTCCAG	.	346.0	105.0	252.0	0.0	.	Atlas-SNP
FIBIN	387758	hgsc.bcm.edu	37	11	27016195	27016195	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	FIBIN-68	NM_203371	exon1	c.G122T	p.G41V	CCGATGGGGACTA	.	165.0	66.0	92.0	0.0	.	Atlas-SNP
HIPK3	10114	hgsc.bcm.edu	37	11	33363182	33363182	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	HIPK3-336	NM_001048200	exon8	c.G1847T	p.C616F	TTGGTTGTGGTGA	.	120.0	40.0	87.0	0.0	.	Atlas-SNP
PAMR1	25891	hgsc.bcm.edu	37	11	35547114	35547114	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	PAMR1-70	NM_001001991	exon1	c.C20A	p.T7K	AACTGCGTCCAGC	.	112.0	26.0	72.0	0.0	.	Atlas-SNP
LRRC4C	57689	hgsc.bcm.edu	37	11	40136500	40136500	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	LRRC4C-521	NM_020929	exon5	c.C1343T	p.T448I	GGAGTAGTGGTTG	.	227.0	77.0	171.0	0.0	.	Atlas-SNP
OR5B12	390191	hgsc.bcm.edu	37	11	58206694	58206694	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	OR5B12-68	NM_001004733	exon1	c.G931T	p.G311X	TGAATCCTATAGA	.	25.0	10.0	33.0	0.0	.	Atlas-SNP
TMEM138	51524	hgsc.bcm.edu	37	11	61133533	61133533	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	TMEM138-90	NM_016464	exon3	c.G145A	p.V49I	ATTGCAGTCCTCT	.	152.0	47.0	107.0	0.0	.	Atlas-SNP
SCGB2A1	4246	hgsc.bcm.edu	37	11	61978049	61978049	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SCGB2A1-90	NM_002407	exon2	c.C220G	p.L74V	AGAACTCTGAAAA	.	104.0	39.0	59.0	0.0	.	Atlas-SNP
XRRA1	143570	hgsc.bcm.edu	37	11	74563036	74563036	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	XRRA1-68	NM_001270381	exon10	c.G413A	p.R138Q	ATACCTCGTGTAT	.	164.0	68.0	104.0	0.0	.	Atlas-SNP
SLC36A4	120103	hgsc.bcm.edu	37	11	92881943	92881943	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SLC36A4-93	NM_152313	exon11	c.C1275T	p.S425S	CAATGTGCTGCTG	.	201.0	81.0	168.0	0.0	.	Atlas-SNP
KIAA1731	85459	hgsc.bcm.edu	37	11	93457488	93457488	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	KIAA1731-22	NM_033395	exon22	c.G6265C	p.D2089H	GATTTTGACTTAT	.	66.0	16.0	49.0	0.0	.	Atlas-SNP
VSTM5	387804	hgsc.bcm.edu	37	11	93554296	93554296	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	.	NM_001144871	exon2	c.C285A	p.D95E	GACTCTGTCCTTG	.	362.0	125.0	265.0	0.0	.	Atlas-SNP
AASDHPPT	60496	hgsc.bcm.edu	37	11	105950341	105950341	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	AASDHPPT-90	NM_015423	exon2	c.C331A	p.H111N	ATCTCTCATCAAG	.	134.0	44.0	118.0	0.0	.	Atlas-SNP
C11orf87	399947	hgsc.bcm.edu	37	11	109294764	109294764	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	C11orf87-92	NM_207645	exon2	c.C405G	p.P135P	GCAGCCCCGGGAC	.	68.0	31.0	18.0	0.0	.	Atlas-SNP
CBL	867	hgsc.bcm.edu	37	11	119149280	119149280	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CBL-4020	NM_005188	exon9	c.G1288T	p.V430L	CCCATCGTGGTAG	.	206.0	58.0	197.0	0.0	.	Atlas-SNP
PVRL1	5818	hgsc.bcm.edu	37	11	119510594	119510594	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	PVRL1-90	NM_203285	exon6	c.C1132A	p.P378T	TCTCCGGTGGGCT	.	119.0	35.0	97.0	0.0	.	Atlas-SNP
PVRL1	5818	hgsc.bcm.edu	37	11	119548456	119548456	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	PVRL1-90	NM_002855	exon3	c.G542T	p.S181I	ACCACACTGGGAG	.	280.0	98.0	246.0	0.0	.	Atlas-SNP
TMEM136	219902	hgsc.bcm.edu	37	11	120198134	120198134	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	TMEM136,NS,carcinoma,0	TMEM136-91	NM_174926	exon2	c.G50T	p.W17L	GGTTTTGGTCTTT	.	73.0	4.0	77.0	0.0	.	Atlas-SNP
TMEM225	338661	hgsc.bcm.edu	37	11	123754008	123754008	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	TMEM225-93	NM_001013743	exon4	c.T515C	p.L172P	ATGTTCAGGCAGG	.	111.0	35.0	91.0	0.0	.	Atlas-SNP
LUZP2	338645	hgsc.bcm.edu	37	11	25071584	25071584	+	Splice_Site	DEL	C	C	-	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	LUZP2-92	NM_001009909	exon10	c.766-1C>-	.	.	.	52.0	21.0	49.0	0.0	.	Atlas-Indel
NCAPD2	9918	hgsc.bcm.edu	37	12	6639952	6639952	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	NCAPD2-660	NM_014865	exon30	c.G3933A	p.Q1311Q	TAGCCAGAGAGCG	.	112.0	48.0	88.0	0.0	.	Atlas-SNP
GPR19	2842	hgsc.bcm.edu	37	12	12814767	12814767	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	GPR19-91	NM_006143	exon4	c.T616A	p.W206R	TGTCCCAGTTGGA	.	82.0	36.0	93.0	0.0	.	Atlas-SNP
PIK3C2G	5288	hgsc.bcm.edu	37	12	18435177	18435177	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	PIK3C2G-1312	NM_004570	exon2	c.C162T	p.Y54Y	ACACTACGAGAGT	.	80.0	21.0	92.0	0.0	.	Atlas-SNP
TMTC1	83857	hgsc.bcm.edu	37	12	29786206	29786206	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	TMTC1-90	NM_001193451	exon6	c.G1002T	p.L334L	ATAGCACAGGGTC	.	233.0	86.0	131.0	0.0	.	Atlas-SNP
RAPGEF3	10411	hgsc.bcm.edu	37	12	48131974	48131974	+	Splice_Site	SNP	A	A	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	RAPGEF3-660	NM_006105	exon27	c.2455+2T>A	.	CCTCTCACCAGGG	.	204.0	70.0	141.0	0.0	.	Atlas-SNP
SCN8A	6334	hgsc.bcm.edu	37	12	52163733	52163733	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SCN8A-29	NM_014191	exon18	c.G3454C	p.E1152Q	CAGCCTGAGGAAT	.	200.0	63.0	124.0	0.0	.	Atlas-SNP
SPRYD3	84926	hgsc.bcm.edu	37	12	53470946	53470946	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SPRYD3-90	NM_032840	exon2	c.A123T	p.R41R	CTGATATCGGAAA	.	53.0	13.0	68.0	0.0	.	Atlas-SNP
GRIP1	23426	hgsc.bcm.edu	37	12	66773061	66773061	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	GRIP1-494	NM_001178074	exon19	c.G2464T	p.G822C	CTTACCCACTGGC	.	152.0	88.0	155.0	0.0	.	Atlas-SNP
C12orf50	160419	hgsc.bcm.edu	37	12	88381692	88381692	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	C12orf50-93	NM_152589	exon9	c.C752A	p.P251H	GTTGTAGGTACTA	.	111.0	6.0	117.0	0.0	.	Atlas-SNP
TMPO	7112	hgsc.bcm.edu	37	12	98940140	98940140	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	TMPO-93	NM_001032283	exon8	c.G994T	p.G332X	TAGGTGGGAGAAA	.	102.0	31.0	108.0	0.0	.	Atlas-SNP
UTP20	27340	hgsc.bcm.edu	37	12	101723173	101723173	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	UTP20-155	NM_014503	exon27	c.G3363A	p.Q1121Q	TTTGCAGATACTG	.	123.0	45.0	88.0	0.0	.	Atlas-SNP
CHPT1	56994	hgsc.bcm.edu	37	12	102117036	102117036	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CHPT1-90	NM_020244	exon6	c.G871C	p.E291Q	GTGTTTGAAAAGC	.	79.0	37.0	79.0	0.0	.	Atlas-SNP
STAB2	55576	hgsc.bcm.edu	37	12	104107546	104107546	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	STAB2-104	NM_017564	exon42	c.G4537T	p.E1513X	TGCCTGGGTAGGT	.	120.0	36.0	97.0	0.0	.	Atlas-SNP
OAS1	4938	hgsc.bcm.edu	37	12	113348875	113348875	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	OAS1-70	NM_001032409	exon3	c.T489G	p.Y163X	CGGCTATAAACCT	.	202.0	74.0	167.0	0.0	.	Atlas-SNP
SDS	10993	hgsc.bcm.edu	37	12	113836362	113836362	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SDS-91	NM_006843	exon5	c.C383T	p.P128L	CAACCCGGGTTGT	.	68.0	24.0	33.0	0.0	.	Atlas-SNP
SDS	10993	hgsc.bcm.edu	37	12	113836363	113836363	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SDS-91	NM_006843	exon5	c.C382A	p.P128T	AACCCGGGTTGTT	.	69.0	25.0	35.0	0.0	.	Atlas-SNP
PIWIL1	9271	hgsc.bcm.edu	37	12	130830339	130830339	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	PIWIL1-92	NM_004764	exon4	c.G232A	p.E78K	TTAGCAGAGAGAG	.	142.0	51.0	103.0	0.0	.	Atlas-SNP
TPTE2	93492	hgsc.bcm.edu	37	13	20024411	20024411	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	TPTE2-92	NM_001141968	exon11	c.C543T	p.P181P	TAGAGTGGGGACA	.	249.0	137.0	337.0	0.0	.	Atlas-SNP
DCLK1	9201	hgsc.bcm.edu	37	13	36384973	36384973	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	DCLK1-826	NM_001195416	exon8	c.G766T	p.G256X	TTTACCCAGTCTC	.	40.0	22.0	43.0	0.0	.	Atlas-SNP
MED4	29079	hgsc.bcm.edu	37	13	48655799	48655799	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	MED4-187	NM_001270629	exon5	c.C352A	p.P118T	TCAGTGGAGCACA	.	58.0	32.0	54.0	0.0	.	Atlas-SNP
OLFM4	10562	hgsc.bcm.edu	37	13	53624435	53624435	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	OLFM4-69	NM_006418	exon5	c.C1062A	p.T354T	CCTGACCACCAAC	.	210.0	120.0	196.0	0.0	.	Atlas-SNP
DIAPH3	81624	hgsc.bcm.edu	37	13	60545177	60545177	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	DIAPH3-516	NM_030932	exon10	c.C979G	p.P327A	GAGGTGGAGGCGG	.	93.0	64.0	72.0	0.0	.	Atlas-SNP
KLHL1	57626	hgsc.bcm.edu	37	13	70413106	70413106	+	Splice_Site	SNP	A	A	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	KLHL1-90	NM_020866	exon7	c.1414+2T>A	.	TTAAATACCTTTG	.	27.0	17.0	39.0	0.0	.	Atlas-SNP
DCAF11	80344	hgsc.bcm.edu	37	14	24584856	24584856	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	.	NM_001163484	exon2	c.A53T	p.E18V	CCTCCGAGGGCTT	.	69.0	20.0	57.0	0.0	.	Atlas-SNP
FOXG1	2290	hgsc.bcm.edu	37	14	29237443	29237443	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	FOXG1-660	NM_005249	exon1	c.C958A	p.R320S	CACCCCCGCGCCA	.	130.0	46.0	43.0	0.0	.	Atlas-SNP
FANCM	57697	hgsc.bcm.edu	37	14	45645661	45645661	+	Missense_Mutation	SNP	G	G	T	rs146490925		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	FANCM-569	NM_020937	exon14	c.G3704T	p.G1235V	ATTTAGGATTCTG	.	23.0	7.0	41.0	0.0	G|1.000;T|0.000	Atlas-SNP
TXNDC16	57544	hgsc.bcm.edu	37	14	52923853	52923853	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	TXNDC16-22	NM_020784	exon17	c.G1658C	p.G553A	ACATATCCTTTTA	.	61.0	23.0	61.0	0.0	.	Atlas-SNP
TXNDC16	57544	hgsc.bcm.edu	37	14	53004373	53004373	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	TXNDC16-22	NM_020784	exon5	c.A261G	p.E87E	TATTTCTTCTTTG	.	29.0	5.0	19.0	0.0	.	Atlas-SNP
DACT1	51339	hgsc.bcm.edu	37	14	59113119	59113119	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	DACT1-291	NM_001079520	exon4	c.G1667T	p.G556V	TCCAGGGGCTGGA	.	83.0	26.0	52.0	0.0	.	Atlas-SNP
TMEM30B	161291	hgsc.bcm.edu	37	14	61747742	61747742	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	TMEM30B-90	NM_001017970	exon1	c.G124T	p.A42S	GGCCCGCGCAGAA	.	33.0	16.0	6.0	0.0	.	Atlas-SNP
ZFYVE26	23503	hgsc.bcm.edu	37	14	68251818	68251818	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ZFYVE26-162	NM_015346	exon19	c.A3481T	p.T1161S	CAAGGGTGCTGCA	.	162.0	53.0	124.0	0.0	.	Atlas-SNP
TTLL5	23093	hgsc.bcm.edu	37	14	76349181	76349181	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	TTLL5-92	NM_015072	exon30	c.G3676A	p.V1226I	TCCCTGGTTCCCA	.	124.0	40.0	77.0	0.0	.	Atlas-SNP
ASB2	51676	hgsc.bcm.edu	37	14	94420823	94420823	+	Silent	SNP	C	C	T	rs201823942		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ASB2-228	NM_016150	exon2	c.G174A	p.A58A	GGGGTCCGCAGGC	.	137.0	53.0	95.0	0.0	C|0.999;T|0.001	Atlas-SNP
RTL1	388015	hgsc.bcm.edu	37	14	101347633	101347633	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	RTL1-46	NM_001134888	exon1	c.G3493T	p.E1165X	ACAGCTCAGCCAG	.	174.0	62.0	80.0	0.0	.	Atlas-SNP
CDC42BPB	9578	hgsc.bcm.edu	37	14	103430940	103430940	+	Silent	SNP	C	C	A	rs45512495	byfrequency;alternate_allele	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CDC42BPB-581	NM_006035	exon19	c.G2625T	p.A875A	CAGCCGCGCGGAC	.	147.0	47.0	56.0	0.0	C|0.998;T|0.002	Atlas-SNP
ADSSL1	122622	hgsc.bcm.edu	37	14	105208191	105208191	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ADSSL1-515	NM_199165	exon9	c.A929C	p.Y310S	GGACCTACCCCTT	.	213.0	70.0	152.0	0.0	.	Atlas-SNP
NDN	4692	hgsc.bcm.edu	37	15	23931489	23931489	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	NDN-90	NM_002487	exon1	c.C876A	p.S292S	GTATCGGGAGGGC	.	26.0	13.0	29.0	0.0	.	Atlas-SNP
GABRB3	2562	hgsc.bcm.edu	37	15	26806226	26806226	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	GABRB3-518	NM_021912	exon8	c.G933T	p.M311I	GCAGCCCATAAGG	.	134.0	56.0	122.0	0.0	.	Atlas-SNP
HERC2	8924	hgsc.bcm.edu	37	15	28422657	28422657	+	Splice_Site	SNP	T	T	C	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	HERC2-234	NM_004667	exon61	c.9164-2A>G	.	GCCACCTGCAACA	.	120.0	52.0	93.0	0.0	.	Atlas-SNP
FAM189A1	23359	hgsc.bcm.edu	37	15	29416896	29416896	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	FAM189A1-22	NM_015307	exon10	c.G1297T	p.G433W	CGCTCCCAGGCAC	.	114.0	57.0	64.0	0.0	.	Atlas-SNP
FMN1	342184	hgsc.bcm.edu	37	15	33192240	33192240	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	FMN1-23	NM_001103184	exon10	c.G2925T	p.R975R	TTGTCCCCGAGTC	.	64.0	19.0	50.0	0.0	.	Atlas-SNP
TRPM7	54822	hgsc.bcm.edu	37	15	50888468	50888468	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	TRPM7-392	NM_017672	exon23	c.C3274G	p.L1092V	CAATAAGAAGATT	.	152.0	52.0	160.0	0.0	.	Atlas-SNP
TLN2	83660	hgsc.bcm.edu	37	15	63054564	63054564	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	TLN2-573	NM_015059	exon36	c.A4873T	p.N1625Y	GCCATCAACCCCA	.	234.0	86.0	106.0	0.0	.	Atlas-SNP
IGDCC4	57722	hgsc.bcm.edu	37	15	65687496	65687496	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	IGDCC4-93	NM_020962	exon8	c.G1512T	p.V504V	GTAGGCCACCACG	.	175.0	65.0	104.0	0.0	.	Atlas-SNP
C15orf60	283677	hgsc.bcm.edu	37	15	73766261	73766261	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	C15orf60-46	NM_001042367	exon2	c.T248A	p.L83Q	CACTACTGGTAGG	.	48.0	10.0	46.0	0.0	.	Atlas-SNP
TBC1D21	161514	hgsc.bcm.edu	37	15	74180025	74180025	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	TBC1D21-92	NM_153356	exon9	c.T842C	p.M281T	TGCAGATGGTGCG	.	164.0	41.0	91.0	0.0	.	Atlas-SNP
CSPG4	1464	hgsc.bcm.edu	37	15	75969502	75969502	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CSPG4-229	NM_001897	exon10	c.T5358A	p.Y1786X	GTGGGCATACACT	.	18.0	4.0	14.0	0.0	.	Atlas-SNP
ADAMTS7	11173	hgsc.bcm.edu	37	15	79063945	79063945	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ADAMTS7-226	NM_014272	exon15	c.G2358A	p.K786K	AGGCTCCTTGGTG	.	36.0	13.0	30.0	0.0	.	Atlas-SNP
TMC3	342125	hgsc.bcm.edu	37	15	81624991	81624991	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	TMC3-70	NM_001080532	exon22	c.C3072A	p.P1024P	CAGAGGGGGCTGT	.	276.0	78.0	115.0	0.0	.	Atlas-SNP
AGBL1	123624	hgsc.bcm.edu	37	15	86791011	86791011	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	.	NM_152336	exon6	c.G498T	p.R166R	CCGACGGGGCTTG	.	172.0	58.0	80.0	0.0	.	Atlas-SNP
FES	2242	hgsc.bcm.edu	37	15	91436336	91436336	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	FES-546	NM_001143783	exon13	c.G1659A	p.L553L	GATCCTGAAGCAG	.	148.0	58.0	77.0	0.0	.	Atlas-SNP
CHD2	1106	hgsc.bcm.edu	37	15	93499776	93499776	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CHD2-229	NM_001271	exon16	c.C1897G	p.L633V	AAAACTCTGATTG	.	72.0	25.0	52.0	0.0	.	Atlas-SNP
ADAMTS17	170691	hgsc.bcm.edu	37	15	100636657	100636657	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ADAMTS17-228	NM_139057	exon15	c.G2041T	p.G681W	CAGACCCGATGAT	.	115.0	29.0	70.0	0.0	.	Atlas-SNP
SRRM2	23524	hgsc.bcm.edu	37	16	2815642	2815642	+	Missense_Mutation	SNP	C	C	A	rs146437403	alternate_allele	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SRRM2-93	NM_016333	exon11	c.C5113A	p.R1705S	CTGTCCCGTAGAA	.	52.0	29.0	75.0	0.0	C|1.000;T|0.000	Atlas-SNP
GTF3C1	2975	hgsc.bcm.edu	37	16	27523098	27523098	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	GTF3C1-94	NM_001520	exon7	c.G1098T	p.R366R	CATATCCCGCTCG	.	236.0	162.0	210.0	1.0	.	Atlas-SNP
SLC12A3	6559	hgsc.bcm.edu	37	16	56899349	56899349	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SLC12A3-155	NM_000339	exon1	c.G202C	p.E68Q	ACATATGAGCACT	.	162.0	64.0	105.0	0.0	.	Atlas-SNP
CCDC135	84229	hgsc.bcm.edu	37	16	57736008	57736008	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CCDC135-90	NM_032269	exon5	c.G665T	p.R222L	TGACGCGGGAGGT	.	263.0	112.0	174.0	0.0	.	Atlas-SNP
ZFHX3	463	hgsc.bcm.edu	37	16	72829228	72829228	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ZFHX3-72	NM_006885	exon9	c.G7353A	p.K2451K	CTCTGGCTTTGGT	.	68.0	14.0	47.0	0.0	.	Atlas-SNP
CDH13	1012	hgsc.bcm.edu	37	16	83378568	83378568	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CDH13-67	NM_001220488	exon7	c.G879T	p.R293R	CTTTCGGGAAGGC	.	116.0	48.0	77.0	0.0	.	Atlas-SNP
GAS8	2622	hgsc.bcm.edu	37	16	90099238	90099238	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	GAS8-227	NM_001481	exon4	c.A401T	p.Q134L	GCATACAGGAGAG	.	383.0	93.0	190.0	0.0	.	Atlas-SNP
GAS8	2622	hgsc.bcm.edu	37	16	90099240	90099240	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	GAS8-227	NM_001481	exon4	c.G403T	p.E135X	ATACAGGAGAGTG	.	384.0	94.0	184.0	0.0	.	Atlas-SNP
ZFHX3	463	hgsc.bcm.edu	37	16	72829226	72829226	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ZFHX3-72	NM_001164766	exon8	c.4614delA	p.P1538fs	.	.	70.0	14.0	47.0	0.0	.	Atlas-Indel
ZFHX3	463	hgsc.bcm.edu	37	16	72829227	72829228	+	Frame_Shift_Del	DEL	GC	GC	-	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ZFHX3-72	NM_001164766	exon8	c.4612_4613del	p.1538_1538del	.	.	69.0	12.0	47.0	0.0	.	Pindel
TP53	7157	hgsc.bcm.edu	37	17	7577580	7577580	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	TP53,NS,carcinoma,0	TP53-70225	NM_001126114	exon7	c.A701G	p.Y234C	TAGTTGTAGTGGA	.	203.0	94.0	204.0	2.0	.	Atlas-SNP
RCVRN	5957	hgsc.bcm.edu	37	17	9801437	9801437	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	RCVRN-90	NM_002903	exon3	c.T578A	p.V193E	TCCTTCACTTTTT	.	115.0	64.0	114.0	0.0	.	Atlas-SNP
KCNJ12	3768	hgsc.bcm.edu	37	17	21319469	21319469	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	KCNJ12-94	NM_021012	exon3	c.A815T	p.H272L	TCTTGCATGAGAT	.	390.0	89.0	383.0	0.0	.	Atlas-SNP
NF1	4763	hgsc.bcm.edu	37	17	29560226	29560226	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	NF1-3353	NM_000267	exon27	c.C3703T	p.Q1235X	TGTTCTCAGTGGG	.	100.0	66.0	93.0	0.0	.	Atlas-SNP
KRTAP4-7	100132476	hgsc.bcm.edu	37	17	39240804	39240804	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	.	NM_033061	exon1	c.C346A	p.R116S	TGCTGCCGCCCCT	.	161.0	15.0	46.0	0.0	.	Atlas-SNP
KRTAP4-7	100132476	hgsc.bcm.edu	37	17	39240805	39240805	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	.	NM_033061	exon1	c.G347T	p.R116L	GCTGCCGCCCCTG	.	162.0	15.0	48.0	0.0	.	Atlas-SNP
PSMC5	5705	hgsc.bcm.edu	37	17	61905533	61905533	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	PSMC5-178	NM_002805	exon2	c.C60A	p.L20L	CGGACTCCGCCAA	.	125.0	97.0	81.0	0.0	.	Atlas-SNP
ASXL3	80816	hgsc.bcm.edu	37	18	31158619	31158619	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ASXL3-49	NM_030632	exon1	c.G24T	p.K8N	GAAGAAGGACCGC	.	105.0	61.0	43.0	0.0	.	Atlas-SNP
SETBP1	26040	hgsc.bcm.edu	37	18	42531994	42531994	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SETBP1-155	NM_015559	exon4	c.T2689A	p.C897S	GATTTCTGCTCCC	.	47.0	26.0	72.0	0.0	.	Atlas-SNP
SETBP1	26040	hgsc.bcm.edu	37	18	42532100	42532100	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SETBP1-155	NM_015559	exon4	c.G2795T	p.S932I	ACGAAAGCCTCAA	.	18.0	10.0	64.0	0.0	.	Atlas-SNP
STK11	6794	hgsc.bcm.edu	37	19	1220640	1220640	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	STK11,NS,carcinoid-endocrine_tumour,0	STK11-5227	NM_000455	exon5	c.C658T	p.Q220X	GCTTTCCAGCCGC	.	73.0	48.0	28.0	0.0	.	Atlas-SNP
S1PR4	8698	hgsc.bcm.edu	37	19	3179663	3179663	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	S1PR4-591	NM_003775	exon1	c.G873T	p.W291C	GGACTGGATCCTG	.	121.0	68.0	103.0	0.0	.	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	37	19	9071377	9071377	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	MUC16-566	NM_024690	exon3	c.A16069T	p.S5357C	GGATGCTCTGTGG	.	158.0	101.0	191.0	0.0	.	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	37	19	9080534	9080534	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	MUC16-566	NM_024690	exon2	c.C9497A	p.T3166N	ATGGTGGTCACTA	.	124.0	74.0	123.0	0.0	.	Atlas-SNP
EMR3	84658	hgsc.bcm.edu	37	19	14749012	14749012	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	EMR3-528	NM_032571	exon11	c.G1389T	p.M463I	CCACTTCATGAGT	.	220.0	15.0	274.0	0.0	.	Atlas-SNP
SLC27A1	376497	hgsc.bcm.edu	37	19	17598000	17598000	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SLC27A1-226	NM_198580	exon3	c.G580T	p.G194W	GTGAGCGGGCATC	.	48.0	38.0	38.0	0.0	.	Atlas-SNP
SLC5A5	6528	hgsc.bcm.edu	37	19	17994715	17994715	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SLC5A5-93	NM_000453	exon12	c.C1386A	p.G462G	CTTGGGCGCCACG	.	45.0	27.0	10.0	0.0	.	Atlas-SNP
ZNF536	9745	hgsc.bcm.edu	37	19	30935331	30935331	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ZNF536-144	NM_014717	exon2	c.G862T	p.E288X	CGCGAGGAGCTGG	.	55.0	26.0	17.0	0.0	.	Atlas-SNP
PDCD5	9141	hgsc.bcm.edu	37	19	33078192	33078192	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	PDCD5-228	NM_004708	exon6	c.G364C	p.D122H	GATGAAGATGACG	.	317.0	150.0	304.0	1.0	.	Atlas-SNP
HAUS5	23354	hgsc.bcm.edu	37	19	36110596	36110596	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	HAUS5-68	NM_015302	exon15	c.G1342A	p.E448K	TGTCTGGAGGAGG	.	235.0	68.0	145.0	0.0	.	Atlas-SNP
LRFN3	79414	hgsc.bcm.edu	37	19	36435463	36435463	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	LRFN3-90	NM_024509	exon3	c.G1429A	p.E477K	CCGGCGGAGAGCC	.	78.0	26.0	18.0	0.0	.	Atlas-SNP
ZNF383	163087	hgsc.bcm.edu	37	19	37734341	37734341	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ZNF383-92	NM_152604	exon5	c.G1203T	p.K401N	TGGGAAGGCCTTT	.	55.0	25.0	74.0	0.0	.	Atlas-SNP
ZNF793	390927	hgsc.bcm.edu	37	19	38027960	38027960	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ZNF793-68	NM_001013659	exon8	c.C400T	p.Q134X	TCAATCCAGAGCC	.	39.0	16.0	73.0	0.0	.	Atlas-SNP
RYR1	6261	hgsc.bcm.edu	37	19	39019290	39019290	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	RYR1-100	NM_001042723	exon74	c.G10974A	p.L3658L	GATCCTGACTGAA	.	483.0	153.0	358.0	0.0	.	Atlas-SNP
RYR1	6261	hgsc.bcm.edu	37	19	39038919	39038919	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	RYR1-100	NM_001042723	exon88	c.C12126A	p.L4042L	CATGCTCGTGGAA	.	398.0	153.0	261.0	1.0	.	Atlas-SNP
PRX	57716	hgsc.bcm.edu	37	19	40901699	40901699	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	PRX-92	NM_181882	exon7	c.C2560G	p.L854V	AAGGCAGAGTGAG	.	82.0	28.0	69.0	0.0	.	Atlas-SNP
GRIK5	2901	hgsc.bcm.edu	37	19	42507538	42507538	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	GRIK5-90	NM_002088	exon18	c.C2460T	p.F820F	CGCCACGAAGACA	.	215.0	13.0	99.0	0.0	.	Atlas-SNP
CBLC	23624	hgsc.bcm.edu	37	19	45281452	45281452	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CBLC-849	NM_001130852	exon1	c.G264T	p.E88D	TCTGGAGGCCAAG	.	39.0	4.0	14.0	0.0	.	Atlas-SNP
DHX34	9704	hgsc.bcm.edu	37	19	47878770	47878770	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	DHX34-231	NM_014681	exon10	c.G2112T	p.Q704H	CGCGCAGGTAGGG	.	26.0	10.0	11.0	0.0	.	Atlas-SNP
LMTK3	114783	hgsc.bcm.edu	37	19	48994785	48994785	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	LMTK3-1357	NM_001080434	exon14	c.C4191A	p.T1397T	CTCGTTGGTTGGC	.	46.0	4.0	25.0	0.0	.	Atlas-SNP
LIM2	3982	hgsc.bcm.edu	37	19	51890472	51890472	+	Missense_Mutation	SNP	C	C	A	rs2741232	alternate_allele	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	LIM2-90	NM_030657	exon2	c.G226T	p.D76Y	CGAGGTCCGCCCT	.	79.0	23.0	67.0	0.0	.	Atlas-SNP
LIM2	3982	hgsc.bcm.edu	37	19	51890473	51890473	+	Silent	SNP	C	C	A	rs147625714	byfrequency;alternate_allele	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	LIM2-90	NM_030657	exon2	c.G225T	p.A75A	GAGGTCCGCCCTG	.	81.0	24.0	66.0	0.0	C|0.999;T|0.001	Atlas-SNP
FPR1	2357	hgsc.bcm.edu	37	19	52249798	52249798	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	FPR1-524	NM_001193306	exon3	c.G450T	p.W150C	CATCACCCAGGGC	.	241.0	93.0	197.0	0.0	.	Atlas-SNP
LILRB5	10990	hgsc.bcm.edu	37	19	54756391	54756391	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	LILRB5-92	NM_001081442	exon10	c.G1496T	p.G499V	GCAGCCCCTGCAG	.	55.0	32.0	39.0	0.0	.	Atlas-SNP
ZNF628	89887	hgsc.bcm.edu	37	19	55993021	55993021	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ZNF628-22	NM_033113	exon3	c.C461G	p.P154R	ACTGCCCCAAGGC	.	200.0	23.0	25.0	0.0	.	Atlas-SNP
RFPL4A	342931	hgsc.bcm.edu	37	19	56274485	56274485	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	RFPL4A-68	NM_001145014	exon3	c.T808C	p.C270R	AGTATCTGTTCTG	.	282.0	36.0	223.0	0.0	.	Atlas-SNP
NLRP5	126206	hgsc.bcm.edu	37	19	56511131	56511131	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	NLRP5-162	NM_153447	exon1	c.C40G	p.L14V	GCTGCTCTGCTCT	.	104.0	41.0	76.0	0.0	.	Atlas-SNP
ZNF548	147694	hgsc.bcm.edu	37	19	57911240	57911240	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ZNF548-67	NM_152909	exon3	c.G1585T	p.E529X	ACAATGGAGAAAG	.	28.0	14.0	27.0	0.0	.	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	37	19	9060440	9060440	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	MUC16-566	NM_024690	exon3	c.27007delA	p.T9003fs	.	.	134.0	73.0	166.0	0.0	.	Atlas-Indel
VPS13D	55187	hgsc.bcm.edu	37	1	12294377	12294377	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	VPS13D-95	NM_018156	exon2	c.C54G	p.V18V	ATATGTCAATAAC	.	172.0	56.0	122.0	0.0	.	Atlas-SNP
MYOM3	127294	hgsc.bcm.edu	37	1	24385424	24385424	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	MYOM3-93	NM_152372	exon36	c.T4040A	p.M1347K	TCTTCCATGATAG	.	123.0	34.0	99.0	0.0	.	Atlas-SNP
NIPAL3	57185	hgsc.bcm.edu	37	1	24786973	24786973	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	NIPAL3-90	NM_020448	exon10	c.G865C	p.A289P	GCAGGTGCAATAT	.	129.0	51.0	86.0	0.0	.	Atlas-SNP
BAI2	576	hgsc.bcm.edu	37	1	32209956	32209956	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	BAI2-526	NM_001703	exon6	c.G925A	p.D309N	CCGGGTCGCCTAC	.	86.0	30.0	32.0	0.0	.	Atlas-SNP
EPHA10	284656	hgsc.bcm.edu	37	1	38230726	38230726	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	EPHA10-1246	NM_001099439	exon1	c.G13C	p.A5P	GACCGGCGCAGGT	.	71.0	28.0	28.0	0.0	.	Atlas-SNP
EXO5	64789	hgsc.bcm.edu	37	1	40981323	40981323	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	.	NM_022774	exon3	c.C1107G	p.V369V	CCAAGTCAAAAAA	.	120.0	31.0	71.0	0.0	.	Atlas-SNP
TTC4	7268	hgsc.bcm.edu	37	1	55188440	55188440	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	TTC4-90	NM_004623	exon5	c.C562G	p.L188V	AAGCTTCTGGAAA	.	244.0	51.0	107.0	0.0	.	Atlas-SNP
SGIP1	84251	hgsc.bcm.edu	37	1	67098763	67098763	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SGIP1-93	NM_032291	exon3	c.G85A	p.D29N	TCACCAGATAGAG	.	87.0	39.0	45.0	0.0	.	Atlas-SNP
ZRANB2	9406	hgsc.bcm.edu	37	1	71538205	71538205	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ZRANB2-92	NM_005455	exon5	c.G328A	p.E110K	CATTTTCTCTTTC	.	161.0	32.0	165.0	0.0	.	Atlas-SNP
FPGT-TNNI3K	100526835	hgsc.bcm.edu	37	1	74929142	74929142	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	.	NM_001199327	exon23	c.A2332T	p.M778L	GCAGACATGGCTT	.	191.0	98.0	107.0	0.0	.	Atlas-SNP
C1orf173	127254	hgsc.bcm.edu	37	1	75038013	75038013	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	C1orf173-94	NM_001002912	exon14	c.G3381C	p.E1127D	TTCGTTCTCAGCA	.	18.0	6.0	24.0	0.0	.	Atlas-SNP
SLC44A5	204962	hgsc.bcm.edu	37	1	75805310	75805310	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SLC44A5-95	NM_152697	exon4	c.C58A	p.P20T	TCCTTGGATCACC	.	57.0	37.0	30.0	0.0	.	Atlas-SNP
ELTD1	64123	hgsc.bcm.edu	37	1	79385979	79385979	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ELTD1-24	NM_022159	exon10	c.G1350T	p.W450C	GAAGAACCAGAAG	.	45.0	22.0	45.0	0.0	.	Atlas-SNP
ELTD1	64123	hgsc.bcm.edu	37	1	79385980	79385980	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ELTD1-24	NM_022159	exon10	c.G1349T	p.W450L	AAGAACCAGAAGG	.	47.0	23.0	45.0	0.0	.	Atlas-SNP
SAMD13	148418	hgsc.bcm.edu	37	1	84764249	84764249	+	Silent	SNP	A	A	G	rs1156085	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SAMD13-226	NM_001010971	exon1	c.A9G	p.G3G	GCGGGGAGGTAAG	.	49.0	14.0	7.0	0.0	A|0.979;G|0.021	Atlas-SNP
WDR47	22911	hgsc.bcm.edu	37	1	109544988	109544988	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	WDR47-91	NM_014969	exon7	c.A1294G	p.R432G	TTTGCCTATAATA	.	28.0	13.0	36.0	0.0	.	Atlas-SNP
CEPT1	10390	hgsc.bcm.edu	37	1	111725483	111725483	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CEPT1-90	NM_006090	exon7	c.C909A	p.I303I	AATGATCTACAAG	.	212.0	106.0	152.0	0.0	.	Atlas-SNP
HSD3B1	3283	hgsc.bcm.edu	37	1	120056635	120056635	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	HSD3B1-92	NM_000862	exon4	c.G489A	p.E163E	TGCTGAGAAGGCT	.	76.0	32.0	87.0	0.0	.	Atlas-SNP
NBPF7	343505	hgsc.bcm.edu	37	1	120385066	120385066	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	NBPF7-24	NM_001047980	exon2	c.G328C	p.E110Q	GCTCCTCAGCTTG	.	69.0	37.0	96.0	0.0	.	Atlas-SNP
ADAM30	11085	hgsc.bcm.edu	37	1	120438173	120438173	+	Missense_Mutation	SNP	G	G	A	rs200088734	alternate_allele	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ADAM30-228	NM_021794	exon1	c.C787T	p.R263C	CAACGCGTATTTT	.	30.0	12.0	63.0	0.0	.	Atlas-SNP
C1orf54	79630	hgsc.bcm.edu	37	1	150248174	150248174	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	C1orf54-90	NM_024579	exon3	c.T155C	p.I52T	TCACCATTGATTA	.	199.0	85.0	124.0	0.0	.	Atlas-SNP
FLG	2312	hgsc.bcm.edu	37	1	152286710	152286710	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	FLG-106	NM_002016	exon3	c.G652A	p.E218K	TATTTTCATAATC	.	123.0	25.0	97.0	0.0	.	Atlas-SNP
LCE4A	199834	hgsc.bcm.edu	37	1	152681610	152681610	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	LCE4A-90	NM_178356	exon1	c.A59G	p.K20R	TCCCCAAGTATCC	.	356.0	66.0	142.0	0.0	.	Atlas-SNP
SPRR4	163778	hgsc.bcm.edu	37	1	152944424	152944424	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SPRR4-68	NM_173080	exon2	c.C58A	p.Q20K	GCCCAGCAGCAGC	.	423.0	73.0	164.0	0.0	.	Atlas-SNP
ADAM15	8751	hgsc.bcm.edu	37	1	155028275	155028275	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ADAM15-651	NM_207195	exon7	c.G622A	p.V208M	CGGGATGTGGTAA	.	473.0	183.0	195.0	0.0	.	Atlas-SNP
ATP1A4	480	hgsc.bcm.edu	37	1	160141399	160141399	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ATP1A4-94	NM_144699	exon12	c.G1706T	p.S569I	TGCCTAGCAGCTT	.	30.0	25.0	36.0	0.0	.	Atlas-SNP
ASTN1	460	hgsc.bcm.edu	37	1	176852120	176852120	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ASTN1-319	NM_004319	exon20	c.G3237A	p.L1079L	AAAGCTCAGCACT	.	218.0	82.0	169.0	0.0	.	Atlas-SNP
RNPEP	6051	hgsc.bcm.edu	37	1	201951890	201951890	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	RNPEP-91	NM_020216	exon1	c.G96T	p.R32R	CTTCCGGGCCTTT	.	50.0	4.0	10.0	0.0	.	Atlas-SNP
GPATCH2	55105	hgsc.bcm.edu	37	1	217793701	217793701	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	GPATCH2-91	NM_018040	exon2	c.G197T	p.R66M	CTTTTCCTTGCCT	.	85.0	60.0	58.0	0.0	.	Atlas-SNP
MARK1	4139	hgsc.bcm.edu	37	1	220835222	220835222	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	MARK1-802	NM_018650	exon18	c.G2102T	p.R701L	CTTTGCGGTTCAC	.	191.0	147.0	163.0	1.0	.	Atlas-SNP
OBSCN	84033	hgsc.bcm.edu	37	1	228471220	228471220	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	OBSCN-403	NM_001271223	exon38	c.C10041T	p.F3347F	CTGCTTCACAGAG	.	318.0	102.0	181.0	0.0	.	Atlas-SNP
OR2W5	441932	hgsc.bcm.edu	37	1	247654468	247654468	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	OR2W5-115	NM_001004698	exon1	c.C39T	p.I13I	ATTCATCCTGGTG	.	143.0	106.0	88.0	0.0	.	Atlas-SNP
SPTA1	6708	hgsc.bcm.edu	37	1	158627366	158627367	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SPTA1-142	NM_003126	exon19	c.2706_2707insA	p.Q902fs	.	.	210.0	157.0	112.0	0.0	.	Atlas-Indel
FLG	2312	hgsc.bcm.edu	37	1	152276933	152276933	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	FLG-106	NM_002016	exon3	c.10430delG	p.R3477fs	.	.	503.0	96.0	147.0	0.0	.	Pindel
PLCB4	5332	hgsc.bcm.edu	37	20	9360778	9360778	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	PLCB4-274	NM_000933	exon10	c.G822T	p.M274I	TGAGATGTATGAA	.	223.0	67.0	251.0	0.0	.	Atlas-SNP
CEP250	11190	hgsc.bcm.edu	37	20	34063418	34063418	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CEP250-27	NM_007186	exon15	c.G1663T	p.E555X	CACCTGGAAGGGG	.	146.0	58.0	101.0	0.0	.	Atlas-SNP
SEMG2	6407	hgsc.bcm.edu	37	20	43850726	43850726	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SEMG2-91	NM_003008	exon2	c.T453A	p.S151S	CCCATCTGGAAAG	.	264.0	104.0	238.0	0.0	.	Atlas-SNP
ARFGEF2	10564	hgsc.bcm.edu	37	20	47630130	47630130	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ARFGEF2-358	NM_006420	exon29	c.G3948A	p.M1316I	TGACATGAATGTA	.	151.0	50.0	89.0	0.0	.	Atlas-SNP
KCNB1	3745	hgsc.bcm.edu	37	20	47990374	47990374	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	KCNB1-92	NM_004975	exon2	c.C1723G	p.R575G	CTGTGCGAGTGGG	.	117.0	34.0	96.0	0.0	.	Atlas-SNP
TSHZ2	128553	hgsc.bcm.edu	37	20	51872153	51872153	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	TSHZ2-232	NM_173485	exon2	c.C2156A	p.S719Y	CCTGCTCCAGCCC	.	164.0	55.0	72.0	0.0	.	Atlas-SNP
MC3R	4159	hgsc.bcm.edu	37	20	54824215	54824215	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	MC3R-660	NM_019888	exon1	c.C316A	p.L106M	GACTACCTGACCT	.	492.0	178.0	281.0	0.0	.	Atlas-SNP
GNAS	2778	hgsc.bcm.edu	37	20	57430199	57430199	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	GNAS-4767	NM_080425	exon1	c.C1879T	p.Q627X	AGTCCCCAGCCCA	.	112.0	34.0	108.0	0.0	.	Atlas-SNP
ZNF831	128611	hgsc.bcm.edu	37	20	57768876	57768876	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ZNF831-126	NM_178457	exon1	c.T2802A	p.D934E	GGCAGATAATGCC	.	60.0	20.0	49.0	0.0	.	Atlas-SNP
GRIK1	2897	hgsc.bcm.edu	37	21	30959761	30959761	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	GRIK1-137	NM_175611	exon11	c.C1673A	p.P558H	GACAGGGGGTTGA	.	221.0	72.0	159.0	0.0	.	Atlas-SNP
KRTAP24-1	643803	hgsc.bcm.edu	37	21	31654682	31654682	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	KRTAP24-1-68	NM_001085455	exon1	c.C569A	p.P190Q	CATAATGGTGAGA	.	143.0	60.0	132.0	0.0	.	Atlas-SNP
ERG	2078	hgsc.bcm.edu	37	21	39817408	39817408	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ERG-848	NM_001136154	exon4	c.C176G	p.P59R	TGCTGAGGGACGC	.	342.0	120.0	238.0	0.0	.	Atlas-SNP
KRTAP10-8	386681	hgsc.bcm.edu	37	21	46032129	46032129	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	KRTAP10-8-153	NM_198695	exon1	c.G112A	p.G38S	TGCACTGGCTCCT	.	140.0	48.0	57.0	0.0	.	Atlas-SNP
TBX1	6899	hgsc.bcm.edu	37	22	19752531	19752531	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	TBX1-154	NM_080647	exon6	c.T735C	p.Y245Y	GGTCTATGTGGAC	.	147.0	97.0	170.0	0.0	.	Atlas-SNP
SGSM1	129049	hgsc.bcm.edu	37	22	25240890	25240890	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SGSM1-27	NM_001098497	exon3	c.G90A	p.V30V	GGCTGTGACACGC	.	145.0	102.0	103.0	0.0	.	Atlas-SNP
SFI1	9814	hgsc.bcm.edu	37	22	31904328	31904328	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SFI1-90	NM_014775	exon2	c.A58G	p.I20V	AAAGTGATTAAGC	.	48.0	4.0	64.0	0.0	.	Atlas-SNP
MICALL1	85377	hgsc.bcm.edu	37	22	38323452	38323452	+	Silent	SNP	G	G	A	rs201808090		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	MICALL1-153	NM_033386	exon9	c.G1500A	p.P500P	GGAGCCGCCCTCG	.	44.0	29.0	18.0	0.0	.	Atlas-SNP
PXDN	7837	hgsc.bcm.edu	37	2	1652055	1652055	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	PXDN-166	NM_012293	exon17	c.G3497T	p.G1166V	GGGATCCCGTGGT	.	192.0	91.0	104.0	0.0	.	Atlas-SNP
APOB	338	hgsc.bcm.edu	37	2	21231248	21231248	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	APOB-175	NM_000384	exon26	c.C8492A	p.S2831Y	TTGCTGGAGAACT	.	66.0	29.0	46.0	0.0	.	Atlas-SNP
FAM98A	25940	hgsc.bcm.edu	37	2	33811716	33811716	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	FAM98A-91	NM_015475	exon6	c.A633T	p.I211I	ATTGGCTATGGCT	.	44.0	17.0	40.0	0.0	.	Atlas-SNP
MSH2	4436	hgsc.bcm.edu	37	2	47641427	47641427	+	Missense_Mutation	SNP	C	C	T	rs139891783		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	MSH2-2445	NM_001258281	exon6	c.C614T	p.S205F	CACTGTCTGCGGT	.	45.0	22.0	83.0	0.0	.	Atlas-SNP
UGP2	7360	hgsc.bcm.edu	37	2	64111157	64111157	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	UGP2-90	NM_001001521	exon5	c.G472A	p.E158K	ACGGATGAAGATA	.	47.0	18.0	78.0	0.0	.	Atlas-SNP
CLEC4F	165530	hgsc.bcm.edu	37	2	71039579	71039579	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CLEC4F-95	NM_001258027	exon5	c.G1539T	p.Q513H	TCTGACCTGCTCC	.	162.0	55.0	135.0	0.0	.	Atlas-SNP
TBC1D8	11138	hgsc.bcm.edu	37	2	101656658	101656658	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	TBC1D8-25	NM_001102426	exon6	c.C1017T	p.I339I	CAGGATGATCTTA	.	220.0	68.0	133.0	0.0	.	Atlas-SNP
IL18R1	8809	hgsc.bcm.edu	37	2	102998142	102998142	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	IL18R1-93	NM_003855	exon5	c.G688A	p.G230R	GAATTAGGTATAT	.	77.0	28.0	94.0	0.0	.	Atlas-SNP
SULT1C3	442038	hgsc.bcm.edu	37	2	108872131	108872131	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SULT1C3-91	NM_001008743	exon4	c.A503T	p.Y168F	AATTTTATGAGAA	.	99.0	18.0	79.0	0.0	.	Atlas-SNP
CNTNAP5	129684	hgsc.bcm.edu	37	2	125660460	125660460	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CNTNAP5-524	NM_130773	exon22	c.G3435A	p.E1145E	TGCAGAGAATCTT	.	85.0	32.0	71.0	0.0	.	Atlas-SNP
IMP4	92856	hgsc.bcm.edu	37	2	131103419	131103419	+	Missense_Mutation	SNP	G	G	T	rs200939050	alternate_allele	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	IMP4-90	NM_033416	exon6	c.G507T	p.M169I	GGTCATGCGGCAT	.	134.0	55.0	79.0	0.0	.	Atlas-SNP
ZEB2	9839	hgsc.bcm.edu	37	2	145153988	145153988	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ZEB2-297	NM_001171653	exon8	c.G2986T	p.E996X	TGTGTTCGTATTT	.	315.0	88.0	199.0	0.0	.	Atlas-SNP
ACVR1	90	hgsc.bcm.edu	37	2	158626945	158626945	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ACVR1-980	NM_001111067	exon7	c.A725T	p.E242V	GACTTCTCATCAC	.	161.0	53.0	99.0	0.0	.	Atlas-SNP
SCN2A	6326	hgsc.bcm.edu	37	2	166152582	166152582	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SCN2A-142	NM_001040143	exon1	c.C249A	p.P83P	GGACCCCTACTAT	.	157.0	62.0	146.0	0.0	.	Atlas-SNP
PDE1A	5136	hgsc.bcm.edu	37	2	183088596	183088596	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	PDE1A-93	NM_005019	exon7	c.G819A	p.Q273Q	CCTTGTCTGAATG	.	118.0	34.0	126.0	0.0	.	Atlas-SNP
NBEAL1	65065	hgsc.bcm.edu	37	2	203972654	203972654	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	NBEAL1-92	NM_001114132	exon13	c.G1605A	p.L535L	ATTGCTGAGAGTG	.	109.0	34.0	77.0	0.0	.	Atlas-SNP
CPS1	1373	hgsc.bcm.edu	37	2	211456582	211456582	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CPS1-162	NM_001875	exon10	c.C975T	p.I325I	GAATATCACAAAC	.	56.0	21.0	31.0	0.0	.	Atlas-SNP
PECR	55825	hgsc.bcm.edu	37	2	216930060	216930060	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	PECR-90	NM_018441	exon3	c.G399T	p.T133T	GGTACCCGTCAGG	.	160.0	51.0	110.0	0.0	.	Atlas-SNP
SPEG	10290	hgsc.bcm.edu	37	2	220332029	220332029	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SPEG-383	NM_005876	exon10	c.C3015T	p.G1005G	CCGTGGCCGCCTG	.	105.0	34.0	47.0	0.0	.	Atlas-SNP
CUL3	8452	hgsc.bcm.edu	37	2	225379488	225379488	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CUL3-229	NM_001257198	exon4	c.A398T	p.D133V	ACACGGTCCTACA	.	128.0	48.0	107.0	0.0	.	Atlas-SNP
NYAP2	57624	hgsc.bcm.edu	37	2	226447396	226447396	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	.	NM_020864	exon4	c.C1263G	p.Y421X	GCTGTACCGAACC	.	210.0	65.0	97.0	0.0	.	Atlas-SNP
SPHKAP	80309	hgsc.bcm.edu	37	2	228883966	228883966	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SPHKAP-167	NM_001142644	exon7	c.C1604A	p.A535E	TGCAGTGCACCAC	.	60.0	17.0	41.0	0.0	.	Atlas-SNP
TRPM8	79054	hgsc.bcm.edu	37	2	234878408	234878408	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	TRPM8-94	NM_024080	exon16	c.C2095G	p.L699V	CTGTGTCTGTTTA	.	257.0	106.0	230.0	0.0	.	Atlas-SNP
C1QL2	165257	hgsc.bcm.edu	37	2	119915573	119915573	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	C1QL2-91	NM_182528	exon1	c.274delC	p.P92fs	.	.	22.0	11.0	6.0	0.0	.	Atlas-Indel
MARCO	8685	hgsc.bcm.edu	37	2	119731955	119731955	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	MARCO-95	NM_006770	exon5	c.506delG	p.G169fs	.	.	69.0	17.0	76.0	0.0	.	Pindel
ANKRD28	23243	hgsc.bcm.edu	37	3	15778712	15778712	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ANKRD28-135	NM_015199	exon5	c.C290G	p.S97C	TCTGCAGAATGCT	.	46.0	24.0	68.0	0.0	.	Atlas-SNP
GOLGA4	2803	hgsc.bcm.edu	37	3	37336491	37336491	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	GOLGA4-93	NM_001172713	exon7	c.G670T	p.A224S	CAGCAGGCAAAGA	.	81.0	6.0	123.0	0.0	.	Atlas-SNP
HHATL	57467	hgsc.bcm.edu	37	3	42739085	42739085	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	HHATL-93	NM_020707	exon7	c.C780A	p.A260A	GTCGACGGCCATG	.	230.0	122.0	214.0	0.0	.	Atlas-SNP
BSN	8927	hgsc.bcm.edu	37	3	49692898	49692898	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	BSN-97	NM_003458	exon5	c.G5909T	p.R1970M	AGCAGAGGCCCTA	.	18.0	10.0	30.0	0.0	.	Atlas-SNP
RBM15B	29890	hgsc.bcm.edu	37	3	51430916	51430916	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	RBM15B-90	NM_013286	exon1	c.A2086T	p.K696X	GAGCCCAAGCCTC	.	206.0	123.0	222.0	0.0	.	Atlas-SNP
ARHGEF3	50650	hgsc.bcm.edu	37	3	56992915	56992915	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ARHGEF3-228	NM_001128615	exon3	c.C65G	p.P22R	CGTTTAGGCCTAG	.	130.0	78.0	125.0	0.0	.	Atlas-SNP
ROBO2	6092	hgsc.bcm.edu	37	3	77666782	77666782	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ROBO2-328	NM_002942	exon22	c.G3412T	p.A1138S	GGCGTGGCTTCTT	.	164.0	93.0	148.0	0.0	.	Atlas-SNP
P2RY14	9934	hgsc.bcm.edu	37	3	150931660	150931660	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	P2RY14-563	NM_014879	exon3	c.A445G	p.M149V	GGAGCATGAGCAT	.	168.0	13.0	88.0	0.0	.	Atlas-SNP
FAM200B	285550	hgsc.bcm.edu	37	4	15689683	15689683	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	.	NM_001145191	exon2	c.G1083A	p.L361L	CTCATTGAATAGC	.	47.0	23.0	105.0	0.0	.	Atlas-SNP
KCNIP4	80333	hgsc.bcm.edu	37	4	20884247	20884247	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	KCNIP4-91	NM_025221	exon1	c.G87T	p.S29S	AGGAGACGACGTT	.	34.0	18.0	50.0	0.0	.	Atlas-SNP
GABRA2	2555	hgsc.bcm.edu	37	4	46252425	46252425	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	GABRA2-94	NM_000807	exon10	c.G1256C	p.R419T	GACATTCTGTCAA	.	58.0	31.0	80.0	0.0	.	Atlas-SNP
CORIN	10699	hgsc.bcm.edu	37	4	47765548	47765548	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CORIN-91	NM_006587	exon4	c.G465C	p.T155T	TGTCAGCGTGGCG	.	156.0	85.0	142.0	0.0	.	Atlas-SNP
TMPRSS11B	132724	hgsc.bcm.edu	37	4	69094576	69094576	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	TMPRSS11B-91	NM_182502	exon9	c.G973T	p.D325Y	AAAAGTCTTCTTG	.	140.0	76.0	149.0	0.0	.	Atlas-SNP
UGT2A3	79799	hgsc.bcm.edu	37	4	69817028	69817028	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	UGT2A3-92	NM_024743	exon1	c.G451T	p.V151L	GAATCACAGGGTC	.	146.0	72.0	234.0	0.0	.	Atlas-SNP
CCSER1	401145	hgsc.bcm.edu	37	4	91389426	91389426	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	.	NM_001145065	exon5	c.G1645T	p.A549S	TGTGCCGCAGTAG	.	100.0	60.0	153.0	0.0	.	Atlas-SNP
PDHA2	5161	hgsc.bcm.edu	37	4	96762414	96762414	+	Silent	SNP	A	A	G	rs150761581	byfrequency;alternate_allele	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	PDHA2-90	NM_005390	exon1	c.A1113G	p.S371S	TGATTCATCTTTT	.	184.0	125.0	172.0	0.0	A|0.998;C|0.002	Atlas-SNP
SEC24B	10427	hgsc.bcm.edu	37	4	110448529	110448529	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SEC24B-137	NM_006323	exon18	c.T3017C	p.L1006P	GTTCACTAGCAGA	.	69.0	41.0	98.0	0.0	.	Atlas-SNP
PITX2	5308	hgsc.bcm.edu	37	4	111542464	111542464	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	PITX2-650	NM_001204397	exon6	c.G246C	p.K82N	CCGCTTCTTCTTA	.	50.0	23.0	62.0	0.0	.	Atlas-SNP
ANK2	287	hgsc.bcm.edu	37	4	114163347	114163347	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ANK2-583	NM_020977	exon9	c.G873T	p.Q291H	CGGTCAGATCGAT	.	142.0	73.0	166.0	0.0	.	Atlas-SNP
KIAA1109	84162	hgsc.bcm.edu	37	4	123268929	123268929	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	KIAA1109-80	NM_015312	exon74	c.G13124A	p.R4375Q	TTCCTCGAAGAGG	.	165.0	103.0	119.0	0.0	.	Atlas-SNP
FAT4	79633	hgsc.bcm.edu	37	4	126238731	126238731	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	FAT4-108	NM_024582	exon1	c.G1165T	p.A389S	TCTCCCGCGGCCA	.	275.0	157.0	223.0	0.0	.	Atlas-SNP
FSTL5	56884	hgsc.bcm.edu	37	4	162954783	162954783	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	FSTL5-158	NM_020116	exon3	c.G154T	p.V52F	CTTTGACTCTTGA	.	16.0	9.0	44.0	0.0	.	Atlas-SNP
ADCY2	108	hgsc.bcm.edu	37	5	7802377	7802377	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ADCY2-97	NM_020546	exon21	c.C2675T	p.S892F	TTGCCTCCATTCC	.	126.0	42.0	97.0	0.0	.	Atlas-SNP
PRDM9	56979	hgsc.bcm.edu	37	5	23527817	23527817	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	PRDM9-139	NM_020227	exon11	c.A2620T	p.S874C	AGGTCAAGCCTCT	.	284.0	115.0	194.0	0.0	.	Atlas-SNP
CDH9	1007	hgsc.bcm.edu	37	5	26881656	26881656	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CDH9-99	NM_016279	exon12	c.G1959T	p.R653R	GTTGTCCCGGACA	.	45.0	9.0	43.0	0.0	.	Atlas-SNP
CDH9	1007	hgsc.bcm.edu	37	5	26881657	26881657	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CDH9-99	NM_016279	exon12	c.G1958T	p.R653L	TTGTCCCGGACAT	.	43.0	8.0	41.0	0.0	.	Atlas-SNP
OSMR	9180	hgsc.bcm.edu	37	5	38869147	38869147	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	OSMR-496	NM_001168355	exon2	c.A1G	p.M1V	GAACTGATGGCTC	.	98.0	25.0	104.0	0.0	.	Atlas-SNP
FYB	2533	hgsc.bcm.edu	37	5	39118988	39118988	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	FYB-24	NM_199335	exon15	c.G2251A	p.E751K	CTTCTTCATTTCT	.	88.0	15.0	80.0	0.0	.	Atlas-SNP
ENC1	8507	hgsc.bcm.edu	37	5	73930600	73930600	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ENC1-228	NM_003633	exon2	c.G1711T	p.V571F	ACGGGACAGTGGT	.	413.0	134.0	312.0	0.0	.	Atlas-SNP
COL4A3BP	10087	hgsc.bcm.edu	37	5	74681788	74681788	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	COL4A3BP-226	NM_001130105	exon14	c.C1740A	p.G580G	TGTGACGCCTTTA	.	73.0	24.0	60.0	0.0	.	Atlas-SNP
PCDHGA3	56112	hgsc.bcm.edu	37	5	140723866	140723866	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	PCDHGA3-68	NM_018916	exon1	c.G266T	p.R89M	CGGAGAGGATAGA	.	116.0	42.0	122.0	0.0	.	Atlas-SNP
CDHR2	54825	hgsc.bcm.edu	37	5	176016115	176016115	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CDHR2-70	NM_001171976	exon22	c.C2940A	p.T980T	GGCCACCATCCCT	.	191.0	62.0	163.0	0.0	.	Atlas-SNP
HK3	3101	hgsc.bcm.edu	37	5	176314086	176314086	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	HK3-294	NM_002115	exon13	c.C1774A	p.Q592K	TCTGCTGGAAGTC	.	266.0	98.0	144.0	0.0	.	Atlas-SNP
GLRA1	2741	hgsc.bcm.edu	37	5	151231112	151231112	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	GLRA1-91	NM_000171	exon7	c.752delA	p.Y251fs	.	.	308.0	130.0	224.0	0.0	.	Atlas-Indel
ALDH5A1	7915	hgsc.bcm.edu	37	6	24523089	24523089	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ALDH5A1-90	NM_170740	exon8	c.T1148C	p.V383A	TGCGCGTAGGTAA	.	111.0	35.0	99.0	0.0	.	Atlas-SNP
HIST1H3A	8350	hgsc.bcm.edu	37	6	26020915	26020915	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	HIST1H3A-92	NM_003529	exon1	c.A198G	p.L66L	TAAACTACCTTTC	.	148.0	56.0	75.0	0.0	.	Atlas-SNP
HIST1H2BN	8341	hgsc.bcm.edu	37	6	27806779	27806779	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	HIST1H2BN-68	NM_003520	exon1	c.G340A	p.E114K	GTGTCGGAGGGCA	.	211.0	74.0	84.0	0.0	.	Atlas-SNP
ZKSCAN3	80317	hgsc.bcm.edu	37	6	28331530	28331530	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ZKSCAN3-92	NM_001242895	exon4	c.C251T	p.S84L	AGGATTCATCTCA	.	190.0	63.0	149.0	0.0	.	Atlas-SNP
HLA-F	3134	hgsc.bcm.edu	37	6	29692009	29692009	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	HLA-F-22	NM_018950	exon3	c.C394T	p.R132C	CTCCTCCGCGGGT	.	237.0	81.0	130.0	0.0	.	Atlas-SNP
PRRC2A	7916	hgsc.bcm.edu	37	6	31590581	31590581	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	PRRC2A-156	NM_004638	exon2	c.G15T	p.S5S	TCGCTCGGGGCCG	.	132.0	48.0	84.0	0.0	.	Atlas-SNP
TNXB	7148	hgsc.bcm.edu	37	6	32017977	32017977	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	TNXB-90	NM_019105	exon27	c.C9231T	p.S3077S	CATCCAGGACAGG	.	309.0	103.0	219.0	0.0	.	Atlas-SNP
SLC25A27	9481	hgsc.bcm.edu	37	6	46623682	46623682	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SLC25A27-90	NM_001204051	exon2	c.G209A	p.G70E	ATAGGGGAATGGT	.	156.0	72.0	100.0	0.0	.	Atlas-SNP
CRISP1	167	hgsc.bcm.edu	37	6	49806196	49806196	+	Silent	SNP	G	G	A	rs35289289	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CRISP1-90	NM_001205220	exon7	c.C576T	p.G192G	TGGGACGCCTGTC	.	58.0	24.0	43.0	0.0	G|0.960;A|0.040	Atlas-SNP
PKHD1	5314	hgsc.bcm.edu	37	6	51920477	51920477	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	PKHD1-603	NM_170724	exon19	c.T1744C	p.F582L	CACAGAAGGGCTC	.	139.0	49.0	63.0	0.0	.	Atlas-SNP
IL17A	3605	hgsc.bcm.edu	37	6	52052591	52052591	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	IL17A-90	NM_002190	exon2	c.C218T	p.P73L	CCTCACCTTGGAA	.	161.0	44.0	102.0	0.0	.	Atlas-SNP
DST	667	hgsc.bcm.edu	37	6	56336950	56336950	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	DST-523	NM_015548	exon75	c.G14196T	p.R4732S	GTTTACCCTAGGA	.	235.0	84.0	138.0	0.0	.	Atlas-SNP
KPNA5	3841	hgsc.bcm.edu	37	6	117013269	117013269	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	KPNA5-290	NM_002269	exon3	c.G190C	p.E64Q	ATGCTTGAAAGTC	.	76.0	42.0	148.0	0.0	.	Atlas-SNP
PMS2	5395	hgsc.bcm.edu	37	7	6022454	6022454	+	Splice_Site	SNP	C	C	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	PMS2-1083	NM_000535	exon13	c.2174+1G>A	.	CACTCACGCTATG	.	624.0	157.0	506.0	1.0	.	Atlas-SNP
GRID2IP	392862	hgsc.bcm.edu	37	7	6565891	6565891	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	.	NM_001145118	exon4	c.G883A	p.G295S	CGTGGCCGCGAAG	.	87.0	31.0	70.0	0.0	.	Atlas-SNP
ETV1	2115	hgsc.bcm.edu	37	7	13971177	13971177	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ETV1-659	NM_001163147	exon8	c.C752T	p.P251L	GGAGGGGGAAAGC	.	178.0	59.0	149.0	0.0	.	Atlas-SNP
FERD3L	222894	hgsc.bcm.edu	37	7	19184760	19184760	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	FERD3L-153	NM_152898	exon1	c.G226T	p.E76X	CCTCCTCTTCTCC	.	65.0	22.0	73.0	0.0	.	Atlas-SNP
CDK13	8621	hgsc.bcm.edu	37	7	40085455	40085455	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CDK13-548	NM_003718	exon6	c.G2374A	p.E792K	GTGTTTGAATATA	.	53.0	21.0	47.0	0.0	.	Atlas-SNP
SUN3	256979	hgsc.bcm.edu	37	7	48068434	48068434	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SUN3-514	NM_152782	exon2	c.C102T	p.D34D	ATTTTCGTCCTCT	.	218.0	18.0	176.0	0.0	.	Atlas-SNP
ABCA13	154664	hgsc.bcm.edu	37	7	48314045	48314045	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ABCA13-521	NM_152701	exon17	c.C4782G	p.G1594G	TGTAGGCAATTCC	.	69.0	28.0	91.0	0.0	.	Atlas-SNP
IKZF1	10320	hgsc.bcm.edu	37	7	50444361	50444361	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	IKZF1-1242	NM_006060	exon4	c.G291T	p.R97S	CCACAGGGACCAA	.	197.0	80.0	143.0	0.0	.	Atlas-SNP
PCLO	27445	hgsc.bcm.edu	37	7	82784132	82784132	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	PCLO-29	NM_033026	exon2	c.A1825T	p.T609S	TGCATGTGTTAAA	.	272.0	90.0	180.0	0.0	.	Atlas-SNP
SEMA3D	223117	hgsc.bcm.edu	37	7	84685101	84685101	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SEMA3D-138	NM_152754	exon7	c.C793A	p.R265S	ATTCACGAAAGAA	.	26.0	12.0	45.0	0.0	.	Atlas-SNP
ABCB1	5243	hgsc.bcm.edu	37	7	87178755	87178755	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ABCB1-582	NM_000927	exon15	c.T1634A	p.L545Q	CGAACCAGGGCAC	.	191.0	51.0	123.0	0.0	.	Atlas-SNP
RUNDC3B	154661	hgsc.bcm.edu	37	7	87400049	87400049	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	RUNDC3B-69	NM_001134405	exon7	c.T782A	p.L261H	ATCAGCTTACCCT	.	155.0	68.0	123.0	0.0	.	Atlas-SNP
STEAP2	261729	hgsc.bcm.edu	37	7	89854425	89854425	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	STEAP2-92	NM_152999	exon2	c.C29T	p.P10L	GAAGCCCTAAGAG	.	172.0	54.0	121.0	0.0	.	Atlas-SNP
FOXP2	93986	hgsc.bcm.edu	37	7	114268677	114268677	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	FOXP2-295	NM_148899	exon3	c.C341A	p.S114Y	TCCTGTCTCCTCA	.	140.0	39.0	98.0	0.0	.	Atlas-SNP
CFTR	1080	hgsc.bcm.edu	37	7	117232327	117232327	+	Silent	SNP	C	C	G	rs1800102		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CFTR-518	NM_000492	exon14	c.C2106G	p.L702L	TATTCTCAATCCA	.	16.0	6.0	30.0	0.0	.	Atlas-SNP
CTTNBP2	83992	hgsc.bcm.edu	37	7	117358169	117358169	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CTTNBP2-94	NM_033427	exon22	c.C4649A	p.A1550D	GAATCAGCAATCT	.	75.0	4.0	46.0	0.0	.	Atlas-SNP
FEZF1	389549	hgsc.bcm.edu	37	7	121942939	121942939	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	FEZF1-91	NM_001024613	exon3	c.G983T	p.S328I	GTGGAACTTCTAT	.	89.0	30.0	105.0	0.0	.	Atlas-SNP
POT1	25913	hgsc.bcm.edu	37	7	124503540	124503540	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	POT1-227	NM_001042594	exon7	c.G17T	p.R6L	CAAACACGTAAGG	.	267.0	96.0	191.0	0.0	.	Atlas-SNP
BRAF	673	hgsc.bcm.edu	37	7	140453154	140453154	+	Missense_Mutation	SNP	T	T	C	rs121913338	bycluster	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	BRAF,back,benign_melanocytic_nevus,0	BRAF-92146	NM_004333	exon15	c.A1781G	p.D594G	CCAAAATCACCTA	.	77.0	25.0	54.0	0.0	.	Atlas-SNP
CLEC5A	23601	hgsc.bcm.edu	37	7	141635690	141635690	+	Missense_Mutation	SNP	G	G	A	rs117965702	alternate_allele	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CLEC5A-90	NM_013252	exon5	c.C269T	p.S90L	CAAGATGATTCAG	.	76.0	27.0	60.0	0.0	G|0.998;T|0.002	Atlas-SNP
OR6V1	346517	hgsc.bcm.edu	37	7	142750104	142750104	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	OR6V1-23	NM_001001667	exon1	c.G667C	p.V223L	ACCACTGTGCTGC	.	264.0	102.0	208.0	0.0	.	Atlas-SNP
SSPO	23145	hgsc.bcm.edu	37	7	149518553	149518553	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	.	NM_198455	exon88	c.C12622T	p.Q4208X	TGCCCTCAGCCCT	.	56.0	22.0	9.0	0.0	.	Atlas-SNP
ETV1	2115	hgsc.bcm.edu	37	7	13971174	13971174	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ETV1-659	NM_001163150	exon5	c.636delT	p.P212fs	.	.	175.0	58.0	149.0	0.0	.	Atlas-Indel
ETV1	2115	hgsc.bcm.edu	37	7	13971176	13971177	+	Frame_Shift_Del	DEL	GG	GG	-	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ETV1-659	NM_001163150	exon5	c.633_634del	p.211_212del	.	.	179.0	40.0	150.0	0.0	.	Pindel
UNC5D	137970	hgsc.bcm.edu	37	8	35579843	35579843	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	UNC5D-96	NM_080872	exon9	c.C1233G	p.G411G	CTATGGCGTGGAC	.	207.0	120.0	166.0	0.0	.	Atlas-SNP
ST18	9705	hgsc.bcm.edu	37	8	53071652	53071652	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ST18-95	NM_014682	exon15	c.C1612G	p.P538A	TCACTGGATTTGG	.	34.0	17.0	24.0	0.0	.	Atlas-SNP
HEY1	23462	hgsc.bcm.edu	37	8	80677603	80677603	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	HEY1-658	NM_012258	exon5	c.C735T	p.T245T	GGCGGAGGTGACC	.	283.0	30.0	115.0	0.0	.	Atlas-SNP
CSMD3	114788	hgsc.bcm.edu	37	8	114449052	114449052	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CSMD3-1132	NM_198123	exon1	c.C32A	p.A11E	TCCTTTGCTCGGC	.	44.0	32.0	43.0	0.0	.	Atlas-SNP
LRRC24	441381	hgsc.bcm.edu	37	8	145747994	145747994	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	LRRC24-90	NM_001024678	exon5	c.G1407A	p.E469E	GAACATCTCGTGG	.	301.0	57.0	66.0	0.0	.	Atlas-SNP
SLC1A1	6505	hgsc.bcm.edu	37	9	4573909	4573909	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SLC1A1-514	NM_004170	exon8	c.A770T	p.Y257F	CCAGTTATATGCC	.	137.0	21.0	104.0	0.0	.	Atlas-SNP
CNTLN	54875	hgsc.bcm.edu	37	9	17462995	17462995	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CNTLN-91	NM_017738	exon20	c.A3388T	p.K1130X	CACATAAAGGAAA	.	335.0	104.0	283.0	0.0	.	Atlas-SNP
DENND4C	55667	hgsc.bcm.edu	37	9	19300261	19300261	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	DENND4C-92	NM_017925	exon9	c.G1243T	p.E415X	TTACTTGAGAGTA	.	80.0	31.0	70.0	0.0	.	Atlas-SNP
UNC13B	10497	hgsc.bcm.edu	37	9	35366986	35366986	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	UNC13B-157	NM_006377	exon11	c.G1210A	p.E404K	CTCCCGGAAGGGT	.	80.0	18.0	60.0	0.0	.	Atlas-SNP
TPM2	7169	hgsc.bcm.edu	37	9	35684309	35684309	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	TPM2-515	NM_213674	exon8	c.G706A	p.E236K	GGGTCTCAGCCTG	.	116.0	35.0	98.0	0.0	.	Atlas-SNP
FRMPD1	22844	hgsc.bcm.edu	37	9	37733737	37733737	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	FRMPD1-159	NM_014907	exon12	c.C1133T	p.S378F	TTATTTCTGCTGC	.	27.0	11.0	34.0	0.0	.	Atlas-SNP
SPATA31A6	389730	hgsc.bcm.edu	37	9	43627291	43627291	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	.	NM_001145196	exon4	c.C1396T	p.L466F	GGAAAAGCAGTGG	.	27.0	19.0	14.0	0.0	.	Atlas-SNP
APBA1	320	hgsc.bcm.edu	37	9	72132096	72132096	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	APBA1-91	NM_001163	exon2	c.G31C	p.E11Q	TCACCTCCACCTC	.	41.0	16.0	10.0	0.0	.	Atlas-SNP
MURC	347273	hgsc.bcm.edu	37	9	103348271	103348271	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	MURC-69	NM_001018116	exon2	c.G633A	p.R211R	GACACGGCAGAAT	.	128.0	26.0	94.0	0.0	.	Atlas-SNP
OR13C3	138803	hgsc.bcm.edu	37	9	107298061	107298061	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	OR13C3-69	NM_001001961	exon1	c.C1034A	p.P345Q	TGAATTGGTTTTT	.	103.0	29.0	83.0	0.0	.	Atlas-SNP
OR13D1	286365	hgsc.bcm.edu	37	9	107457687	107457687	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	OR13D1-70	NM_001004484	exon1	c.G985T	p.V329F	AAAGAGGTCAAAG	.	71.0	20.0	43.0	0.0	.	Atlas-SNP
IKBKAP	8518	hgsc.bcm.edu	37	9	111679945	111679945	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	IKBKAP-318	NM_003640	exon9	c.C746T	p.S249L	CTGCCTGAGGGTC	.	92.0	46.0	88.0	0.0	.	Atlas-SNP
KIAA1958	158405	hgsc.bcm.edu	37	9	115336645	115336645	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	KIAA1958-91	NM_133465	exon2	c.G285A	p.Q95Q	GACACAGACTAGC	.	176.0	67.0	141.0	0.0	.	Atlas-SNP
TLR4	7099	hgsc.bcm.edu	37	9	120475158	120475158	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	TLR4-577	NM_138557	exon2	c.C152A	p.A51D	GTCTGGCTGGTTT	.	29.0	13.0	35.0	0.0	.	Atlas-SNP
LHX6	26468	hgsc.bcm.edu	37	9	124979518	124979518	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	LHX6-90	NM_199160	exon5	c.G511T	p.D171Y	CCCAGTCGCTGGC	.	163.0	19.0	51.0	0.0	.	Atlas-SNP
RC3H2	54542	hgsc.bcm.edu	37	9	125645584	125645584	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	RC3H2-523	NM_018835	exon5	c.G658T	p.V220L	AAAGTACCAGAAC	.	138.0	49.0	132.0	0.0	.	Atlas-SNP
DENND1A	57706	hgsc.bcm.edu	37	9	126439003	126439003	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	DENND1A-92	NM_024820	exon6	c.G368C	p.R123T	ACCTGTCTTTTTG	.	36.0	16.0	33.0	0.0	.	Atlas-SNP
PTGDS	5730	hgsc.bcm.edu	37	9	139874677	139874677	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	PTGDS-91	NM_000954	exon5	c.C491A	p.T164N	AATTCACCGCCTT	.	157.0	48.0	122.0	0.0	.	Atlas-SNP
NELFB	25920	hgsc.bcm.edu	37	9	140150001	140150001	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	.	NM_015456	exon1	c.G40A	p.E14K	AACGGCGAGGACC	.	120.0	47.0	31.0	0.0	.	Atlas-SNP
ELAVL2	1993	hgsc.bcm.edu	37	9	23693475	23693476	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ELAVL2-516	NM_004432	exon6	c.723_724insA	p.N241fs	.	.	122.0	42.0	107.0	0.0	.	Atlas-Indel
CACNA1F	778	hgsc.bcm.edu	37	X	49083514	49083514	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CACNA1F-176	NM_005183	exon9	c.G1194T	p.E398D	GTCTTCCTCCATC	.	67.0	45.0	54.0	0.0	.	Atlas-SNP
KIAA2022	340533	hgsc.bcm.edu	37	X	73962657	73962657	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	KIAA2022-183	NM_001008537	exon3	c.G1735T	p.A579S	GCTTGGCATATTT	.	49.0	39.0	54.0	0.0	.	Atlas-SNP
CYLC1	1538	hgsc.bcm.edu	37	X	83124906	83124906	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CYLC1-112	NM_021118	exon2	c.C51T	p.S17S	TAATTCCATTCCA	.	67.0	37.0	89.0	0.0	.	Atlas-SNP
SEPT6	23157	hgsc.bcm.edu	37	X	118774715	118774715	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SEPT6-969	NM_145799	exon6	c.G727C	p.E243Q	TCAGTTCTTCTGT	.	79.0	61.0	51.0	0.0	.	Atlas-SNP
GPR112	139378	hgsc.bcm.edu	37	X	135431107	135431107	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	GPR112-183	NM_153834	exon6	c.G5242A	p.E1748K	GTTCCTGAAAATA	.	28.0	19.0	30.0	0.0	.	Atlas-SNP
MAGEA2B	266740	hgsc.bcm.edu	37	X	151886093	151886093	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	.	NM_153488	exon2	c.497delT	p.V166fs	.	.	582.0	207.0	419.0	0.0	.	Atlas-Indel
MAGEA2B	266740	hgsc.bcm.edu	37	X	151919389	151919389	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	.	NM_153488	exon2	c.500delT	p.V167fs	.	.	603.0	196.0	466.0	0.0	.	Atlas-Indel
