Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Algorithm
MYO3A	53904	hgsc.bcm.edu	37	10	26357698	26357698	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	MYO3A-1007	NM_017433	exon12	c.A1055G	p.N352S	TGCAGAATACAGT	.	30.0	9.0	24.0	0.0	.	Atlas-SNP
LGI1	9211	hgsc.bcm.edu	37	10	95537350	95537350	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	LGI1-517	NM_005097	exon4	c.G407T	p.R136L	CTTTCCGGGGACT	.	96.0	32.0	65.0	0.0	.	Atlas-SNP
KRTAP5-4	387267	hgsc.bcm.edu	37	11	1643234	1643234	+	Silent	SNP	G	G	T	rs186088038	by1000genomes	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	.	NM_001012709	exon1	c.C90A	p.G30G	GCCACAGCCCCCA	.	149.0	14.0	13.0	0.0	G|0.996;T|0.004	Atlas-SNP
MTMR2	8898	hgsc.bcm.edu	37	11	95595266	95595434	+	Frame_Shift_Del	DEL	CCTAAAGAAGGAAAGAAAAAATAATTAAAACTGAGCAATTAATACTGTCCAATTATAGAGCTGATCAAAATCTTAATCAGAAATGCTTTAATTAGAAATGATCAGAAATGAACAAAACTAGCTACAAACAACACACTCATGTACATACAAAAATCTAATCTGACTCTTA	CCTAAAGAAGGAAAGAAAAAATAATTAAAACTGAGCAATTAATACTGTCCAATTATAGAGCTGATCAAAATCTTAATCAGAAATGCTTTAATTAGAAATGATCAGAAATGAACAAAACTAGCTACAAACAACACACTCATGTACATACAAAAATCTAATCTGACTCTTA	-	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	CCTAAAGAAGGAAAGAAAAAATAATTAAAACTGAGCAATTAATACTGTCCAATTATAGAGCTGATCAAAATCTTAATCAGAAATGCTTTAATTAGAAATGATCAGAAATGAACAAAACTAGCTACAAACAACACACTCATGTACATACAAAAATCTAATCTGACTCTTA	CCTAAAGAAGGAAAGAAAAAATAATTAAAACTGAGCAATTAATACTGTCCAATTATAGAGCTGATCAAAATCTTAATCAGAAATGCTTTAATTAGAAATGATCAGAAATGAACAAAACTAGCTACAAACAACACACTCATGTACATACAAAAATCTAATCTGACTCTTA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	MTMR2-91	NM_016156	exon5	c.358_359del	p.120_120del	.	.	47.0	10.0	49.0	0.0	.	Pindel
CCDC62	84660	hgsc.bcm.edu	37	12	123273380	123273380	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	CCDC62-157	NM_201435	exon5	c.C574T	p.R192C	GCCCTACGTGATG	.	176.0	46.0	131.0	0.0	.	Atlas-SNP
OR4N2	390429	hgsc.bcm.edu	37	14	20295677	20295677	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	OR4N2-71	NM_001004723	exon1	c.C70G	p.Q24E	GATATTCAGCTCC	.	356.0	37.0	239.0	0.0	.	Atlas-SNP
OR4N2	390429	hgsc.bcm.edu	37	14	20295722	20295722	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	OR4N2-71	NM_001004723	exon1	c.C115G	p.L39V	ATCATCCTCCCTG	.	260.0	30.0	210.0	0.0	.	Atlas-SNP
OR4N2	390429	hgsc.bcm.edu	37	14	20295790	20295790	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	OR4N2-71	NM_001004723	exon1	c.C183G	p.F61L	CTATTTCTTTCTG	.	213.0	30.0	191.0	0.0	.	Atlas-SNP
OR4N2	390429	hgsc.bcm.edu	37	14	20295819	20295819	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	OR4N2-71	NM_001004723	exon1	c.C212G	p.A71G	TGGATGCATCCTA	.	240.0	26.0	183.0	0.0	.	Atlas-SNP
OR4N2	390429	hgsc.bcm.edu	37	14	20295862	20295862	+	Silent	SNP	C	C	T	rs139052676	byfrequency;alternate_allele	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	OR4N2-71	NM_001004723	exon1	c.C255T	p.F85F	GGACTTCCTCTCT	.	232.0	15.0	192.0	0.0	C|1.000;G|0.000	Atlas-SNP
C14orf93	60686	hgsc.bcm.edu	37	14	23456429	23456429	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	C14orf93-91	NM_001130708	exon7	c.G1612A	p.E538K	TTTATTCATCCTT	.	111.0	14.0	83.0	0.0	.	Atlas-SNP
ADCY4	196883	hgsc.bcm.edu	37	14	24799400	24799400	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	ADCY4-93	NM_001198592	exon8	c.G1032T	p.M344I	CAGGCCCATGCGC	.	127.0	22.0	113.0	0.0	.	Atlas-SNP
PRPF39	55015	hgsc.bcm.edu	37	14	45564512	45564512	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	PRPF39-70	NM_017922	exon2	c.G70C	p.V24L	GAGGTAGTGGTAG	.	239.0	50.0	226.0	0.0	.	Atlas-SNP
WDR16	146845	hgsc.bcm.edu	37	17	9501596	9501596	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	WDR16-71	NM_145054	exon5	c.C582G	p.I194M	AAAAATCTGGCCA	.	39.0	16.0	41.0	0.0	.	Atlas-SNP
MYOCD	93649	hgsc.bcm.edu	37	17	12626174	12626174	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	MYOCD-93	NM_001146312	exon5	c.A264G	p.A88A	CACTGCAGAGAGG	.	61.0	12.0	98.0	0.0	.	Atlas-SNP
CIDEA	1149	hgsc.bcm.edu	37	18	12274230	12274230	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	CIDEA-91	NM_001279	exon4	c.G469A	p.V157M	TACTCCGTGTCCT	.	83.0	12.0	114.0	0.0	.	Atlas-SNP
DCC	1630	hgsc.bcm.edu	37	18	50976874	50976874	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	DCC-225	NM_005215	exon23	c.G3234A	p.P1078P	AGAGCCGCCAATT	.	65.0	39.0	78.0	0.0	.	Atlas-SNP
NR1H2	7376	hgsc.bcm.edu	37	19	50881825	50881825	+	Silent	SNP	G	G	A	rs55817866	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	NR1H2-186	NM_001256647	exon5	c.G228A	p.Q76Q	GAAACAGCAGCAG	.	135.0	7.0	47.0	0.0	G|0.903;A|0.097	Atlas-SNP
PRKD3	23683	hgsc.bcm.edu	37	2	37543587	37543587	+	Silent	SNP	A	A	T	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	PRKD3-543	NM_005813	exon1	c.T81A	p.S27S	ACACGGAGAAGCA	.	124.0	10.0	126.0	0.0	.	Atlas-SNP
MAATS1	89876	hgsc.bcm.edu	37	3	119462961	119462961	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	.	NM_033364	exon14	c.G1820A	p.R607Q	GCCAGCGGCGGGT	.	134.0	23.0	114.0	0.0	.	Atlas-SNP
UTRN	7402	hgsc.bcm.edu	37	6	144878365	144878365	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	UTRN-95	NM_007124	exon49	c.G7207C	p.E2403Q	CTCCTGGAGGAAT	.	153.0	11.0	120.0	0.0	.	Atlas-SNP
OR2AE1	81392	hgsc.bcm.edu	37	7	99473846	99473846	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	OR2AE1-90	NM_001005276	exon1	c.A811G	p.K271E	CAACTTTGTTCTG	.	69.0	8.0	93.0	0.0	.	Atlas-SNP
CSMD1	64478	hgsc.bcm.edu	37	8	3216707	3216707	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	CSMD1-86	NM_033225	exon21	c.C3271T	p.R1091C	ACACACGGCGGCC	.	134.0	23.0	68.0	0.0	.	Atlas-SNP
EGR3	1960	hgsc.bcm.edu	37	8	22548147	22548147	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	EGR3-90	NM_004430	exon2	c.T1003A	p.C335S	ACTCGCAGGCAAA	.	313.0	123.0	90.0	0.0	.	Atlas-SNP
KIAA1045	23349	hgsc.bcm.edu	37	9	34976195	34976195	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	KIAA1045-69	NM_015297	exon4	c.C611T	p.T204M	GCCTCACGGAGAC	.	79.0	22.0	71.0	0.0	.	Atlas-SNP
PDK3	5165	hgsc.bcm.edu	37	X	24517001	24517001	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	PDK3-377	NM_001142386	exon3	c.C304T	p.P102S	GAGGATCCACAGG	.	133.0	46.0	100.0	0.0	.	Atlas-SNP
FATE1	89885	hgsc.bcm.edu	37	X	150884636	150884636	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	FATE1-131	NM_033085	exon1	c.C45A	p.S15S	AATGTCCCTGGCA	.	286.0	103.0	160.0	0.0	.	Atlas-SNP
FATE1	89885	hgsc.bcm.edu	37	X	150884637	150884637	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	FATE1-131	NM_033085	exon1	c.C46A	p.L16M	ATGTCCCTGGCAG	.	287.0	103.0	160.0	0.0	.	Atlas-SNP
