Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Algorithm
STOX1	219736	hgsc.bcm.edu	37	10	70644430	70644430	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	STOX1-92	NM_152709	exon3	c.G878A	p.C293Y	ACATTTGTGAGAG	.	138.0	63.0	113.0	0.0	.	Atlas-SNP
OR10W1	81341	hgsc.bcm.edu	37	11	58034971	58034971	+	Silent	SNP	C	C	T	rs200368241		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	OR10W1-69	NM_207374	exon1	c.G360A	p.P120P	CTGCAACGGGTGG	.	95.0	8.0	100.0	0.0	C|0.999;T|0.001	Atlas-SNP
SACS	26278	hgsc.bcm.edu	37	13	23906646	23906646	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	SACS-298	NM_014363	exon10	c.A11369T	p.Q3790L	CGCAACTGAAAAC	.	70.0	4.0	111.0	0.0	.	Atlas-SNP
FRY	10129	hgsc.bcm.edu	37	13	32810275	32810275	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	FRY-142	NM_023037	exon43	c.T5776C	p.L1926L	GACTGCTTGAAGA	.	98.0	7.0	116.0	0.0	.	Atlas-SNP
UGGT2	55757	hgsc.bcm.edu	37	13	96579505	96579505	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	UGGT2-92	NM_020121	exon18	c.G2063T	p.R688L	TTAGTACGCAAAA	.	137.0	7.0	225.0	0.0	.	Atlas-SNP
KIFC3	3801	hgsc.bcm.edu	37	16	57793684	57793684	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	KIFC3-91	NM_001130100	exon18	c.C2432T	p.T811I	CTACTGGTCCCAG	.	130.0	7.0	105.0	0.0	.	Atlas-SNP
KCNG4	93107	hgsc.bcm.edu	37	16	84271024	84271024	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	KCNG4-93	NM_172347	exon2	c.G68C	p.W23S	TGACTCCAAGGGC	.	86.0	26.0	70.0	0.0	.	Atlas-SNP
ARMC5	79798	hgsc.bcm.edu	37	16	31477224	31477224	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	ARMC5-24	NM_001105247	exon5	c.1917delT	p.V639fs	.	.	55.0	24.0	48.0	0.0	.	Atlas-Indel
C17orf97	400566	hgsc.bcm.edu	37	17	263682	263682	+	Missense_Mutation	SNP	G	G	A	rs181299622		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	C17orf97-91	NM_001013672	exon2	c.G1048A	p.E350K	GACCCCGAGGCCC	.	113.0	6.0	84.0	0.0	G|0.978;A|0.022	Atlas-SNP
NR1H2	7376	hgsc.bcm.edu	37	19	50881825	50881825	+	Silent	SNP	G	G	A	rs55817866	byfrequency	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	NR1H2-186	NM_001256647	exon5	c.G228A	p.Q76Q	GAAACAGCAGCAG	.	101.0	6.0	100.0	0.0	G|0.903;A|0.097	Atlas-SNP
RRAGC	64121	hgsc.bcm.edu	37	1	39321479	39321479	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	RRAGC-91	NM_022157	exon3	c.A542T	p.D181V	AGACCATCAACTT	.	95.0	6.0	115.0	0.0	.	Atlas-SNP
ZCCHC11	23318	hgsc.bcm.edu	37	1	52943488	52943488	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	ZCCHC11-93	NM_001009881	exon12	c.T1915C	p.F639L	TGTAGAATTTAAG	.	112.0	18.0	111.0	0.0	.	Atlas-SNP
ATF4	468	hgsc.bcm.edu	37	22	39918189	39918189	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	ATF4-90	NM_001675	exon2	c.C638T	p.T213I	AAGACACCCCTTC	.	308.0	216.0	419.0	1.0	.	Atlas-SNP
HOXD4	3233	hgsc.bcm.edu	37	2	177016766	177016766	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	HOXD4-91	NM_014621	exon1	c.C405A	p.P135P	CTACCCCTGGATG	.	81.0	12.0	135.0	0.0	.	Atlas-SNP
MARCH4	57574	hgsc.bcm.edu	37	2	217124357	217124357	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	MARCH4-69	NM_020814	exon4	c.G911A	p.R304Q	TGCCACCGTTTAA	.	87.0	52.0	87.0	0.0	.	Atlas-SNP
TIGD1	200765	hgsc.bcm.edu	37	2	233414422	233414422	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	TIGD1-22	NM_145702	exon1	c.C171A	p.F57L	CTTCAAGAACTTT	.	51.0	4.0	53.0	0.0	.	Atlas-SNP
MYEOV2	150678	hgsc.bcm.edu	37	2	241066032	241066032	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	MYEOV2-68	NM_138336	exon5	c.C707A	p.A236D	CCACCAGCAACGG	.	156.0	9.0	195.0	0.0	.	Atlas-SNP
KLHDC8B	200942	hgsc.bcm.edu	37	3	49211828	49211828	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	KLHDC8B-90	NM_173546	exon3	c.A533G	p.Y178C	AGATCTATGTCCT	.	102.0	33.0	92.0	0.0	.	Atlas-SNP
STAB1	23166	hgsc.bcm.edu	37	3	52554839	52554839	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	STAB1-139	NM_015136	exon55	c.G5726T	p.W1909L	CCTGCTGGCGCTT	.	58.0	12.0	52.0	0.0	.	Atlas-SNP
DNAJC13	23317	hgsc.bcm.edu	37	3	132245070	132245070	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	DNAJC13-272	NM_015268	exon53	c.C6326G	p.A2109G	GTCTAGCCTGTGA	.	219.0	85.0	131.0	0.0	.	Atlas-SNP
EXOC1	55763	hgsc.bcm.edu	37	4	56737029	56737029	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	EXOC1-950	NM_001024924	exon6	c.C789T	p.N263N	TAGTAACACTAAT	.	191.0	86.0	170.0	0.0	.	Atlas-SNP
FBXO8	26269	hgsc.bcm.edu	37	4	175158607	175158607	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	FBXO8-290	NM_012180	exon6	c.C916T	p.H306Y	AAAGATGCCCTAC	.	83.0	26.0	101.0	0.0	.	Atlas-SNP
ZNF394	84124	hgsc.bcm.edu	37	7	99092230	99092230	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	ZNF394-90	NM_032164	exon3	c.A608G	p.K203R	AACTCTTTGTTCT	.	46.0	24.0	21.0	0.0	.	Atlas-SNP
SLC25A37	51312	hgsc.bcm.edu	37	8	23429210	23429210	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	SLC25A37-90	NM_016612	exon4	c.C859T	p.R287W	GCCTTCCGGACGG	.	116.0	47.0	80.0	0.0	.	Atlas-SNP
SLC25A37	51312	hgsc.bcm.edu	37	8	23429211	23429211	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	SLC25A37-90	NM_016612	exon4	c.G860T	p.R287L	CCTTCCGGACGGT	.	116.0	46.0	81.0	0.0	.	Atlas-SNP
CHMP4C	92421	hgsc.bcm.edu	37	8	82667643	82667644	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	CHMP4C-92	NM_152284	exon3	c.407_408insA	p.T136fs	.	.	179.0	66.0	138.0	0.0	.	Atlas-Indel
