Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Algorithm
VSTM4	196740	hgsc.bcm.edu	37	10	50311823	50311823	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	VSTM4-154	NM_144984	exon3	c.A540T	p.A180A	TAAGTCTGCGGTG	.	143.0	32.0	153.0	0.0	.	Atlas-SNP
FAM178A	55719	hgsc.bcm.edu	37	10	102684506	102684506	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	.	NM_018121	exon5	c.C1748T	p.S583L	AGAGTTCAGGAAA	.	74.0	20.0	73.0	0.0	.	Atlas-SNP
C10orf137	26098	hgsc.bcm.edu	37	10	127422004	127422004	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	C10orf137-590	NM_015608	exon9	c.C1058T	p.P353L	AAATTCCCAATTT	.	66.0	13.0	48.0	0.0	.	Atlas-SNP
MGMT	4255	hgsc.bcm.edu	37	10	131565182	131565182	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	MGMT-1108	NM_002412	exon5	c.G638T	p.G213V	GCTTGGGAGGGAG	.	87.0	24.0	123.0	0.0	.	Atlas-SNP
KRTAP5-5	439915	hgsc.bcm.edu	37	11	1651229	1651229	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	KRTAP5-5-23	NM_001001480	exon1	c.G159A	p.A53A	CTGTGCGGGCTGT	.	69.0	14.0	41.0	0.0	.	Atlas-SNP
CELF1	10658	hgsc.bcm.edu	37	11	47505954	47505954	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	CELF1-92	NM_001172639	exon7	c.T510A	p.D170E	CAGGCCATCAGGT	.	145.0	36.0	126.0	0.0	.	Atlas-SNP
OR5D18	219438	hgsc.bcm.edu	37	11	55587904	55587904	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	OR5D18-71	NM_001001952	exon1	c.A799C	p.N267H	TCCAAAAACTCCA	.	112.0	30.0	97.0	0.0	.	Atlas-SNP
YPEL4	219539	hgsc.bcm.edu	37	11	57414559	57414559	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	YPEL4-90	NM_145008	exon2	c.C22A	p.P8T	GGCCCGGACCGGG	.	132.0	36.0	126.0	0.0	.	Atlas-SNP
FCHSD2	9873	hgsc.bcm.edu	37	11	72578934	72578934	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	FCHSD2-228	NM_014824	exon13	c.G1284A	p.V428V	ACTGGTCACTGCA	.	70.0	14.0	77.0	0.0	.	Atlas-SNP
FAT3	120114	hgsc.bcm.edu	37	11	92624213	92624213	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	FAT3-73	NM_001008781	exon25	c.G13608A	p.V4536V	GAGCGTGGGAGAG	.	69.0	18.0	79.0	0.0	.	Atlas-SNP
PPHLN1	51535	hgsc.bcm.edu	37	12	42839868	42839869	+	In_Frame_Ins	INS	-	-	CCCCGCAGC	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	PPHLN1-154	NM_001143787	exon11	c.1054_1055insCCCCGCAGC	p.A352delinsAPQP	.	.	56.0	10.0	32.0	0.0	.	Atlas-Indel
STAB2	55576	hgsc.bcm.edu	37	12	104147000	104147001	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	STAB2-104	NM_017564	exon61	c.6583_6584insC	p.T2195fs	.	.	113.0	18.0	111.0	0.0	.	Atlas-Indel
PRKD1	5587	hgsc.bcm.edu	37	14	30066912	30066912	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	PRKD1-1534	NM_002742	exon16	c.G2219A	p.R740Q	GACCTCCGGAAAG	.	58.0	19.0	47.0	0.0	.	Atlas-SNP
PYGL	5836	hgsc.bcm.edu	37	14	51383442	51383442	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	PYGL-91	NM_002863	exon9	c.A1010G	p.Q337R	TTCAGCTGGATGG	.	258.0	49.0	232.0	0.0	.	Atlas-SNP
RALGAPA1	253959	hgsc.bcm.edu	37	14	36155747	36155747	+	Splice_Site	DEL	C	C	-	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	RALGAPA1-138	NM_194301	exon19	c.2559+2G>-	.	.	.	129.0	23.0	95.0	0.0	.	Atlas-Indel
NPAP1	23742	hgsc.bcm.edu	37	15	24921531	24921531	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	.	NM_018958	exon1	c.G517A	p.D173N	GGGGAGGATGACG	.	71.0	11.0	58.0	0.0	.	Atlas-SNP
ECI1	1632	hgsc.bcm.edu	37	16	2293441	2293441	+	Splice_Site	SNP	C	C	T	rs141975235		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	ECI1-90	NM_001178029	exon6	c.442-1G>A	.	GGCTCCCTGCAGG	.	45.0	11.0	66.0	0.0	C|1.000;T|0.000	Atlas-SNP
MEFV	4210	hgsc.bcm.edu	37	16	3293492	3293492	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	MEFV-228	NM_000243	exon10	c.G1995C	p.W665C	CAGGATCCATGCT	.	59.0	13.0	76.0	0.0	.	Atlas-SNP
SH2B1	25970	hgsc.bcm.edu	37	16	28878100	28878100	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	SH2B1-92	NM_015503	exon1	c.G685C	p.E229Q	CGTTTTGAGAGGC	.	58.0	10.0	116.0	0.0	.	Atlas-SNP
TOP2A	7153	hgsc.bcm.edu	37	17	38555090	38555090	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	TOP2A-655	NM_001067	exon26	c.G3388C	p.D1130H	GCATATCAAGAAG	.	104.0	26.0	123.0	0.0	.	Atlas-SNP
TEX2	55852	hgsc.bcm.edu	37	17	62254810	62254810	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	TEX2-91	NM_018469	exon6	c.G2467C	p.E823Q	CCTCCTCAGAGGG	.	50.0	12.0	42.0	0.0	.	Atlas-SNP
CBX8	57332	hgsc.bcm.edu	37	17	77769859	77769861	+	In_Frame_Del	DEL	GAG	GAG	-	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	GAG	GAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	CBX8-226	NM_020649	exon4	c.242_244del	p.81_82del	.	.	117.0	21.0	172.0	0.0	.	Atlas-Indel
FBN3	84467	hgsc.bcm.edu	37	19	8130961	8130961	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	FBN3-100	NM_032447	exon63	c.G8272A	p.V2758I	AGCTGACGCCACG	.	122.0	21.0	62.0	0.0	.	Atlas-SNP
CD320	51293	hgsc.bcm.edu	37	19	8370031	8370031	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	CD320-90	NM_016579	exon2	c.C152G	p.S51X	GAGCCTGAGCTGG	.	51.0	15.0	59.0	0.0	.	Atlas-SNP
CDC37	11140	hgsc.bcm.edu	37	19	10506791	10506791	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	CDC37-522	NM_007065	exon2	c.G191T	p.C64F	CTCTGGCACTCGG	.	237.0	42.0	169.0	0.0	.	Atlas-SNP
MLL4	8085	hgsc.bcm.edu	37	19	36212357	36212357	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	MLL4-697	NM_014727	exon3	c.G2108C	p.S703T	ACCTCAGCCTGCC	.	125.0	18.0	129.0	0.0	.	Atlas-SNP
ZNF45	7596	hgsc.bcm.edu	37	19	44419275	44419275	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	ZNF45-91	NM_003425	exon10	c.T313G	p.S105A	TCTGGGAGCAGAA	.	36.0	8.0	40.0	0.0	.	Atlas-SNP
ZNF701	55762	hgsc.bcm.edu	37	19	53085521	53085521	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	ZNF701-90	NM_018260	exon4	c.A209T	p.H70L	TGGTCCACACAGG	.	253.0	47.0	246.0	0.0	.	Atlas-SNP
TMEM201	199953	hgsc.bcm.edu	37	1	9667767	9667767	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	TMEM201-68	NM_001130924	exon7	c.G1313T	p.R438L	CTCCTCGACGGAC	.	51.0	4.0	57.0	0.0	.	Atlas-SNP
EPHA10	284656	hgsc.bcm.edu	37	1	38192880	38192880	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	EPHA10-1246	NM_001099439	exon8	c.G1666A	p.A556T	CTGAGGCAGCTGG	.	107.0	30.0	148.0	0.0	.	Atlas-SNP
SETDB1	9869	hgsc.bcm.edu	37	1	150902468	150902468	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	SETDB1-228	NM_001145415	exon3	c.G286C	p.V96L	TCTTTGGTGAAGG	.	96.0	19.0	92.0	0.0	.	Atlas-SNP
DENND4B	9909	hgsc.bcm.edu	37	1	153911506	153911506	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	DENND4B-69	NM_014856	exon13	c.G1835A	p.R612Q	CGTTCCCGGGATT	.	106.0	17.0	110.0	0.0	.	Atlas-SNP
METTL18	92342	hgsc.bcm.edu	37	1	169762072	169762072	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	METTL18-90	NM_033418	exon2	c.A765G	p.P255P	TACTTTTGGTTTC	.	121.0	14.0	88.0	0.0	.	Atlas-SNP
TMEM63A	9725	hgsc.bcm.edu	37	1	226050027	226050027	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	TMEM63A-91	NM_014698	exon13	c.C976G	p.R326G	TCATCCGTGTGTA	.	142.0	24.0	175.0	0.0	.	Atlas-SNP
OR6F1	343169	hgsc.bcm.edu	37	1	247875887	247875887	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	OR6F1-68	NM_001005286	exon1	c.C171A	p.T57T	CATGGGGGTATGC	.	94.0	9.0	80.0	0.0	.	Atlas-SNP
OR14I1	401994	hgsc.bcm.edu	37	1	248845366	248845366	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	OR14I1-46	NM_001004734	exon1	c.C240T	p.I80I	GTTACGGATGGAT	.	521.0	94.0	431.0	0.0	.	Atlas-SNP
GNAS	2778	hgsc.bcm.edu	37	20	57485075	57485075	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	GNAS-4767	NM_080426	exon10	c.T867C	p.A289A	CCTTGCTGGGAAA	.	132.0	27.0	97.0	0.0	.	Atlas-SNP
GNAS	2778	hgsc.bcm.edu	37	20	57485076	57485076	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	GNAS-4767	NM_080426	exon10	c.G868T	p.G290W	CTTGCTGGGAAAT	.	131.0	27.0	97.0	0.0	.	Atlas-SNP
ZRANB3	84083	hgsc.bcm.edu	37	2	135988259	135988259	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	ZRANB3-658	NM_032143	exon13	c.C1778G	p.T593R	GATGGTGTCTCTT	.	287.0	55.0	232.0	0.0	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	37	2	179446654	179446654	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	TTN-636	NM_001267550	exon315	c.G66442T	p.A22148S	CATAAGCGGCCTT	.	93.0	27.0	83.0	0.0	.	Atlas-SNP
ANKAR	150709	hgsc.bcm.edu	37	2	190595328	190595328	+	Splice_Site	SNP	G	G	T	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	ANKAR-72	NM_144708	exon16	c.3300+1G>T	.	ATTAAGGTATAAA	.	69.0	13.0	49.0	0.0	.	Atlas-SNP
ABCA12	26154	hgsc.bcm.edu	37	2	215847044	215847044	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	ABCA12-99	NM_173076	exon30	c.C4446A	p.G1482G	CTTCATGCCTCCT	.	141.0	21.0	133.0	0.0	.	Atlas-SNP
EPHB1	2047	hgsc.bcm.edu	37	3	134967302	134967302	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	EPHB1-1492	NM_004441	exon14	c.A2641G	p.M881V	GATAAGATGATCC	.	208.0	48.0	238.0	0.0	.	Atlas-SNP
GMPS	8833	hgsc.bcm.edu	37	3	155611467	155611467	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	GMPS-229	NM_003875	exon2	c.C188T	p.A63V	CATTTGCTATAAA	.	79.0	24.0	85.0	0.0	.	Atlas-SNP
DTHD1	401124	hgsc.bcm.edu	37	4	36296567	36296567	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	DTHD1-46	NM_001170700	exon4	c.C1174G	p.P392A	TGTTCTCCATACC	.	125.0	36.0	117.0	0.0	.	Atlas-SNP
IPO11	51194	hgsc.bcm.edu	37	5	61779887	61779887	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	IPO11-227	NM_001134779	exon11	c.A1192C	p.T398P	TTCTTCACATATC	.	266.0	60.0	224.0	0.0	.	Atlas-SNP
PCDHA7	56141	hgsc.bcm.edu	37	5	140215891	140215891	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	PCDHA7-94	NM_018910	exon1	c.C1923T	p.D641D	GACGGACGCACCG	.	224.0	46.0	186.0	0.0	.	Atlas-SNP
EYS	346007	hgsc.bcm.edu	37	6	66053948	66053948	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	EYS-660	NM_198283	exon9	c.C1582T	p.H528Y	CTTCATGTGGGAA	.	119.0	25.0	95.0	0.0	.	Atlas-SNP
DAXX	1616	hgsc.bcm.edu	37	6	33288834	33288835	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	DAXX-731	NM_001254717	exon2	c.493_494del	p.165_165del	.	.	83.0	15.0	91.0	0.0	.	Pindel
JAZF1	221895	hgsc.bcm.edu	37	7	27880467	27880467	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	JAZF1-808	NM_175061	exon4	c.G405A	p.E135E	CACCTCCTCCTCG	.	110.0	24.0	111.0	0.0	.	Atlas-SNP
MAN1B1	11253	hgsc.bcm.edu	37	9	139990835	139990835	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	MAN1B1-91	NM_016219	exon4	c.A612G	p.T204T	GAGGACAGTCATC	.	123.0	31.0	93.0	0.0	.	Atlas-SNP
IL1RAPL2	26280	hgsc.bcm.edu	37	X	104440271	104440271	+	Missense_Mutation	SNP	C	C	T	rs146735893		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	IL1RAPL2-194	NM_017416	exon3	c.C197T	p.T66M	ATAGCACGGCCCA	.	118.0	49.0	173.0	0.0	C|1.000;T|0.000	Atlas-SNP
