Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Algorithm
ANK3	288	hgsc.bcm.edu	37	10	61819102	61819102	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	ANK3-107	NM_020987	exon41	c.G12682A	p.D4228N	ACCTGTCATCCAG	.	71.0	34.0	88.0	0.0	.	Atlas-SNP
ADAMTS14	140766	hgsc.bcm.edu	37	10	72489935	72489935	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	ADAMTS14-232	NM_080722	exon6	c.C1032G	p.R344R	GCAGCGCCAGGAC	.	141.0	75.0	103.0	0.0	.	Atlas-SNP
PITPNM1	9600	hgsc.bcm.edu	37	11	67262351	67262351	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	PITPNM1-227	NM_001130848	exon18	c.A2705G	p.K902R	TGCCACTTCTCCC	.	93.0	6.0	98.0	0.0	.	Atlas-SNP
PARP11	57097	hgsc.bcm.edu	37	12	3921573	3921573	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	PARP11-523	NM_020367	exon8	c.A733G	p.S245G	AACGACTGGAATA	.	82.0	40.0	64.0	0.0	.	Atlas-SNP
ATN1	1822	hgsc.bcm.edu	37	12	7045924	7045924	+	Missense_Mutation	SNP	G	G	T	rs199988271	alternate_allele	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	ATN1-139	NM_001007026	exon5	c.G1494T	p.Q498H	GCAGCAGCAGCAG	.	141.0	8.0	102.0	0.0	G|0.999;A|0.001	Atlas-SNP
CLEC1A	51267	hgsc.bcm.edu	37	12	10223960	10223960	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	CLEC1A-91	NM_016511	exon6	c.C815A	p.P272H	TCAGGGGGGACAT	.	157.0	69.0	94.0	0.0	.	Atlas-SNP
KIAA1467	57613	hgsc.bcm.edu	37	12	13232844	13232844	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	KIAA1467-92	NM_020853	exon12	c.G1764A	p.E588E	AATGGAGGGCCAG	.	251.0	122.0	177.0	0.0	.	Atlas-SNP
TRPV4	59341	hgsc.bcm.edu	37	12	110226237	110226237	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	TRPV4-94	NM_021625	exon13	c.T2176C	p.S726P	CCTTGGAGACCTG	.	201.0	44.0	150.0	0.0	.	Atlas-SNP
RAD9B	144715	hgsc.bcm.edu	37	12	110960124	110960124	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	RAD9B-228	NM_152442	exon10	c.G1033C	p.A345P	AGCCCTGCAATGA	.	384.0	43.0	278.0	0.0	.	Atlas-SNP
RNF17	56163	hgsc.bcm.edu	37	13	25341412	25341412	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	RNF17-228	NM_001184993	exon2	c.C133T	p.H45Y	ATAGGTCACCATT	.	81.0	64.0	101.0	0.0	.	Atlas-SNP
MTUS2	23281	hgsc.bcm.edu	37	13	29599148	29599148	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	MTUS2-218	NM_001033602	exon1	c.C343A	p.Q115K	ACCATTCAGAGGG	.	64.0	19.0	81.0	0.0	.	Atlas-SNP
STARD13	90627	hgsc.bcm.edu	37	13	33716447	33716447	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	STARD13-94	NM_178006	exon4	c.G387C	p.K129N	ACCTACCTTTTTC	.	56.0	40.0	61.0	0.0	.	Atlas-SNP
LIG4	3981	hgsc.bcm.edu	37	13	108862298	108862298	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	LIG4-659	NM_002312	exon2	c.C1319G	p.P440R	TTGTCTGGCTTGT	.	60.0	42.0	52.0	0.0	.	Atlas-SNP
CEP152	22995	hgsc.bcm.edu	37	15	49048340	49048340	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	CEP152-70	NM_001194998	exon20	c.C3105G	p.I1035M	CAGTTGGATCCGC	.	73.0	8.0	84.0	0.0	.	Atlas-SNP
VPS13C	54832	hgsc.bcm.edu	37	15	62170946	62170946	+	Splice_Site	SNP	C	C	A	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	VPS13C-92	NM_020821	exon75	c.10003-1G>T	.	ATGCAACTAAAAG	.	20.0	7.0	42.0	0.0	.	Atlas-SNP
MEFV	4210	hgsc.bcm.edu	37	16	3293669	3293669	+	Silent	SNP	G	G	C	rs104895213	alternate_allele	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	MEFV-228	NM_000243	exon10	c.C1818G	p.T606T	GTAAGCGGTTTCT	.	117.0	51.0	89.0	0.0	.	Atlas-SNP
SHISA9	729993	hgsc.bcm.edu	37	16	12996322	12996322	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	.	NM_001145205	exon1	c.C401G	p.P134R	GCAAGCCCCCCGC	.	167.0	34.0	113.0	0.0	.	Atlas-SNP
TAOK2	9344	hgsc.bcm.edu	37	16	30002486	30002486	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	TAOK2-521	NM_004783	exon19	c.C2747G	p.S916C	GCTTCTCCAGCAT	.	129.0	47.0	47.0	0.0	.	Atlas-SNP
RPGRIP1L	23322	hgsc.bcm.edu	37	16	53692791	53692791	+	Splice_Site	SNP	C	C	T	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	RPGRIP1L-91	NM_001127897	exon12	c.1244-1G>A	.	TTTGATCTTAAAA	.	56.0	5.0	24.0	0.0	.	Atlas-SNP
SLC35B1	10237	hgsc.bcm.edu	37	17	47780364	47780364	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	SLC35B1-90	NM_005827	exon8	c.T772A	p.F258I	TCATAAAGATGAA	.	136.0	108.0	195.0	0.0	.	Atlas-SNP
DSC2	1824	hgsc.bcm.edu	37	18	28654754	28654754	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	DSC2-517	NM_004949	exon12	c.G1783T	p.V595F	CCGCAACAATCTC	.	181.0	128.0	228.0	0.0	.	Atlas-SNP
LINGO3	645191	hgsc.bcm.edu	37	19	2290685	2290685	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	.	NM_001101391	exon2	c.T1091C	p.V364A	CGCTGCACGATCC	.	89.0	28.0	32.0	0.0	.	Atlas-SNP
ZNRF4	148066	hgsc.bcm.edu	37	19	5455609	5455609	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	ZNRF4-135	NM_181710	exon1	c.G107A	p.R36H	CCTCGCGTCCTGG	.	108.0	11.0	84.0	0.0	.	Atlas-SNP
RDH8	50700	hgsc.bcm.edu	37	19	10127866	10127866	+	Missense_Mutation	SNP	T	T	G	rs2233793	byfrequency;alternate_allele	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	RDH8-94	NM_015725	exon2	c.T297G	p.C99W	CAGCTGTATCCAG	.	146.0	25.0	94.0	0.0	T|0.968;C|0.032	Atlas-SNP
PSMD8	5714	hgsc.bcm.edu	37	19	38865440	38865440	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	PSMD8-68	NM_002812	exon1	c.G199T	p.A67S	GCGGCCGCGGCGG	.	64.0	4.0	7.0	0.0	.	Atlas-SNP
RPAP2	79871	hgsc.bcm.edu	37	1	92789534	92789534	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	RPAP2-91	NM_024813	exon8	c.A1057T	p.S353C	GTGTCTAGTTCAG	.	95.0	73.0	123.0	0.0	.	Atlas-SNP
AGL	178	hgsc.bcm.edu	37	1	100376292	100376292	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	AGL-92	NM_000645	exon26	c.A3674C	p.D1225A	GAGTTGATGAAGA	.	108.0	73.0	159.0	0.0	.	Atlas-SNP
VAV3	10451	hgsc.bcm.edu	37	1	108291635	108291635	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	VAV3-1339	NM_006113	exon15	c.C1457G	p.T486R	TCTTTTGTTTTGC	.	28.0	4.0	38.0	0.0	.	Atlas-SNP
RBM15	64783	hgsc.bcm.edu	37	1	110884071	110884071	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	RBM15-661	NM_001201545	exon1	c.G2044C	p.D682H	AGCCGGGATCGTT	.	117.0	86.0	119.0	0.0	.	Atlas-SNP
LCE1F	353137	hgsc.bcm.edu	37	1	152749023	152749023	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	LCE1F-68	NM_178354	exon1	c.G176C	p.C59S	GGGGCTGCTGCAG	.	49.0	21.0	52.0	0.0	.	Atlas-SNP
RBM12	10137	hgsc.bcm.edu	37	20	34242149	34242149	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	RBM12-93	NM_152838	exon3	c.C1096G	p.L366V	TCATCAGCATTCT	.	72.0	11.0	50.0	0.0	.	Atlas-SNP
ZHX3	23051	hgsc.bcm.edu	37	20	39831045	39831045	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	ZHX3-93	NM_015035	exon3	c.G2512C	p.G838R	GTAGCCCTGGTGG	.	208.0	94.0	133.0	0.0	.	Atlas-SNP
SEMG1	6406	hgsc.bcm.edu	37	20	43836226	43836226	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	SEMG1-92	NM_003007	exon2	c.A288G	p.S96S	AAAATCACAACGA	.	246.0	116.0	184.0	0.0	.	Atlas-SNP
SULF2	55959	hgsc.bcm.edu	37	20	46290611	46290611	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	SULF2-293	NM_198596	exon18	c.G2400C	p.R800S	GACATCCCTGTCC	.	242.0	93.0	126.0	0.0	.	Atlas-SNP
TPTE	7179	hgsc.bcm.edu	37	21	10914373	10914373	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	TPTE-344	NM_199259	exon20	c.G1292A	p.G431E	CATTTTCCTAATG	.	258.0	19.0	286.0	0.0	.	Atlas-SNP
SREBF2	6721	hgsc.bcm.edu	37	22	42262853	42262854	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	SREBF2-154	NM_004599	exon2	c.107_108insT	p.S36fs	.	.	84.0	22.0	92.0	0.0	.	Atlas-Indel
ZC3H15	55854	hgsc.bcm.edu	37	2	187373328	187373328	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	ZC3H15-91	NM_018471	exon10	c.G1149T	p.L383F	TGACTTGGAAGAG	.	113.0	79.0	175.0	1.0	.	Atlas-SNP
VPRBP	9730	hgsc.bcm.edu	37	3	51457650	51457650	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	VPRBP-92	NM_001171904	exon13	c.C2612G	p.S871C	GGGGCAGAAGGCG	.	83.0	57.0	74.0	0.0	.	Atlas-SNP
AMOTL2	51421	hgsc.bcm.edu	37	3	134089857	134089857	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	AMOTL2-135	NM_016201	exon2	c.G419T	p.S140I	CTCCGACTGCCTC	.	75.0	18.0	19.0	0.0	.	Atlas-SNP
NAALADL2	254827	hgsc.bcm.edu	37	3	174814615	174814615	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	NAALADL2-47	NM_207015	exon2	c.C79T	p.Q27X	GCAGATCAAAGAG	.	131.0	102.0	131.0	0.0	.	Atlas-SNP
PCDH7	5099	hgsc.bcm.edu	37	4	30725207	30725207	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	PCDH7-229	NM_032456	exon1	c.C2163A	p.P721P	TCCTCCCAGATCT	.	189.0	79.0	147.0	0.0	.	Atlas-SNP
RASGEF1B	153020	hgsc.bcm.edu	37	4	82366716	82366716	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	RASGEF1B-227	NM_152545	exon8	c.A892C	p.N298H	CAATGTTAAAACA	.	139.0	58.0	117.0	0.0	.	Atlas-SNP
MAST4	375449	hgsc.bcm.edu	37	5	66429340	66429340	+	Splice_Site	SNP	A	A	G	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	MAST4-647	NM_001164664	exon17	c.2094-2A>G	.	CCTCATAGCTTGT	.	251.0	41.0	159.0	0.0	.	Atlas-SNP
MCC	4163	hgsc.bcm.edu	37	5	112824033	112824034	+	In_Frame_Ins	INS	-	-	GCTGCC	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	MCC-69	NM_001085377	exon1	c.79_80insGGCAGC	p.S27delinsGSS	.	.	77.0	46.0	19.0	0.0	.	Atlas-Indel
RARS2	57038	hgsc.bcm.edu	37	6	88229355	88229355	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	RARS2-92	NM_020320	exon14	c.G1183C	p.D395H	AAACATCTTCCAG	.	147.0	104.0	205.0	0.0	.	Atlas-SNP
SCIN	85477	hgsc.bcm.edu	37	7	12664641	12664641	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	SCIN-24	NM_001112706	exon6	c.G766C	p.D256H	GTTTCAGATGCAA	.	106.0	7.0	78.0	0.0	.	Atlas-SNP
AMPH	273	hgsc.bcm.edu	37	7	38500996	38500996	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	AMPH-95	NM_139316	exon11	c.C904T	p.P302S	GGACAGGAGGCCC	.	260.0	54.0	150.0	0.0	.	Atlas-SNP
COL1A2	1278	hgsc.bcm.edu	37	7	94055328	94055328	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	COL1A2-521	NM_000089	exon45	c.G2962C	p.G988R	CCTGTTGGTCCTG	.	124.0	46.0	95.0	0.0	.	Atlas-SNP
CADPS2	93664	hgsc.bcm.edu	37	7	122130227	122130227	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	CADPS2-94	NM_001167940	exon11	c.G1760C	p.R587T	GTGGCCCTATACA	.	160.0	75.0	103.0	0.0	.	Atlas-SNP
SULF1	23213	hgsc.bcm.edu	37	8	70533313	70533313	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	SULF1-518	NM_001128205	exon14	c.A1421T	p.H474L	GAATTCACAAGTG	.	133.0	21.0	86.0	0.0	.	Atlas-SNP
PRSS3	5646	hgsc.bcm.edu	37	9	33797865	33797865	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	PRSS3-90	NM_002771	exon3	c.T239A	p.V80D	TCAAAGTCCTGGA	.	482.0	199.0	294.0	0.0	.	Atlas-SNP
COL27A1	85301	hgsc.bcm.edu	37	9	117053185	117053185	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	COL27A1-94	NM_032888	exon48	c.C4464T	p.P1488P	GGGACCCCCAGGA	.	292.0	128.0	231.0	1.0	.	Atlas-SNP
TLR4	7099	hgsc.bcm.edu	37	9	120475205	120475205	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	TLR4,NS,carcinoma,-1	TLR4-577	NM_138557	exon2	c.G199A	p.G67R	AATGAAGGAAACT	.	68.0	18.0	74.0	0.0	.	Atlas-SNP
PRRC2B	84726	hgsc.bcm.edu	37	9	134351358	134351358	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	PRRC2B-24	NM_013318	exon15	c.C3842T	p.S1281F	AGAGATCCTTCTT	.	66.0	11.0	52.0	0.0	.	Atlas-SNP
CEL	1056	hgsc.bcm.edu	37	9	135947102	135947102	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	CEL-91	NM_001807	exon11	c.C2222T	p.P741L	TGCCCCCCACAGA	.	107.0	42.0	93.0	0.0	.	Atlas-SNP
RXRA	6256	hgsc.bcm.edu	37	9	137325961	137325961	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	RXRA-188	NM_002957	exon9	c.C1149G	p.L383L	GGGGCTCTCGAAC	.	74.0	24.0	71.0	0.0	.	Atlas-SNP
TRAF2	7186	hgsc.bcm.edu	37	9	139818401	139818401	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	TRAF2-660	NM_021138	exon10	c.G1236C	p.V412V	CTTTGTGGTGATG	.	187.0	79.0	138.0	0.0	.	Atlas-SNP
ACOT9	23597	hgsc.bcm.edu	37	X	23754092	23754092	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	ACOT9-133	NM_001037171	exon2	c.G62A	p.G21E	GTCAGTCCTCTTC	.	210.0	93.0	151.0	0.0	.	Atlas-SNP
CXorf38	159013	hgsc.bcm.edu	37	X	40496395	40496395	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	CXorf38-131	NM_144970	exon4	c.G485A	p.R162H	TCATTACGACATT	.	89.0	33.0	96.0	0.0	.	Atlas-SNP
USP51	158880	hgsc.bcm.edu	37	X	55515272	55515272	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	USP51-659	NM_201286	exon2	c.C101T	p.A34V	TTCCCCGCCTTCT	.	79.0	9.0	53.0	0.0	.	Atlas-SNP
ATRX	546	hgsc.bcm.edu	37	X	76875873	76875873	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	ATRX-248	NM_000489	exon20	c.C5262A	p.N1754K	AATTAGGTTATTT	.	384.0	136.0	287.0	0.0	.	Atlas-SNP
ZMAT1	84460	hgsc.bcm.edu	37	X	101139569	101139569	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	ZMAT1-131	NM_001011657	exon7	c.T830C	p.F277S	GTCCGGAAAGTCT	.	149.0	24.0	106.0	0.0	.	Atlas-SNP
ALG13	79868	hgsc.bcm.edu	37	X	110973752	110973752	+	Splice_Site	SNP	G	G	C	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	ALG13-130	NM_001257230	exon21	c.2090-1G>C	.	TCTCTAGAGCCAG	.	164.0	37.0	137.0	0.0	.	Atlas-SNP
MAP7D3	79649	hgsc.bcm.edu	37	X	135303014	135303014	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	MAP7D3-110	NM_001173517	exon15	c.G2291A	p.R764H	TCTTTACGGACCT	.	158.0	53.0	98.0	0.0	.	Atlas-SNP
