Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Algorithm
MKI67	4288	hgsc.bcm.edu	37	10	129899793	129899793	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	MKI67-519	NM_001145966	exon13	c.C8354A	p.P2785H	TCTCTAGGTATGG	.	68.0	4.0	109.0	0.0	.	Atlas-SNP
KRTAP5-4	387267	hgsc.bcm.edu	37	11	1643234	1643234	+	Silent	SNP	G	G	T	rs186088038	by1000genomes	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	.	NM_001012709	exon1	c.C90A	p.G30G	GCCACAGCCCCCA	.	105.0	11.0	53.0	0.0	G|0.996;T|0.004	Atlas-SNP
ABCC9	10060	hgsc.bcm.edu	37	12	21960411	21960411	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	ABCC9-96	NM_020297	exon36	c.G4318A	p.A1440T	CAACCGCATCTAA	.	88.0	49.0	59.0	0.0	.	Atlas-SNP
MDM2	4193	hgsc.bcm.edu	37	12	69233423	69233423	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	MDM2-1270	NM_002392	exon11	c.G1288C	p.E430Q	AAAGAAGAGAGTG	.	367.0	183.0	309.0	0.0	.	Atlas-SNP
TRIM13	10206	hgsc.bcm.edu	37	13	50588527	50588530	+	RNA	DEL	ATAT	ATAT	-	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	ATAT	ATAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	TRIM13-228	.	.	.	.	.	.	17.0	14.0	24.0	0.0	.	Atlas-Indel
TPSD1	23430	hgsc.bcm.edu	37	16	1306346	1306346	+	Missense_Mutation	SNP	C	C	G	rs3865205	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	TPSD1-90	NM_012217	exon1	c.C65G	p.P22R	CGAGCCCGGCCTA	.	254.0	44.0	21.0	0.0	C|0.851;T|0.149	Atlas-SNP
TPSD1	23430	hgsc.bcm.edu	37	16	1306347	1306347	+	Silent	SNP	G	G	C	rs2272969		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	TPSD1-90	NM_012217	exon1	c.G66C	p.P22P	GAGCCCGGCCTAC	.	247.0	45.0	21.0	0.0	.	Atlas-SNP
MEFV	4210	hgsc.bcm.edu	37	16	3304219	3304219	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	MEFV-228	NM_000243	exon2	c.G849A	p.P283P	TCCATCCGGAGTG	.	78.0	42.0	55.0	0.0	.	Atlas-SNP
ATXN2L	11273	hgsc.bcm.edu	37	16	28842312	28842312	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	ATXN2L-92	NM_017492	exon10	c.C1240T	p.R414W	GCACAACGGCCTC	.	25.0	9.0	24.0	0.0	.	Atlas-SNP
TP53	7157	hgsc.bcm.edu	37	17	7579311	7579311	+	Splice_Site	SNP	C	C	A	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	TP53,NS,carcinoma,0	TP53-70225	NM_000546	exon5	c.375+1G>T	.	AACTGACCGTGCA	.	125.0	107.0	189.0	0.0	.	Atlas-SNP
ATAD5	79915	hgsc.bcm.edu	37	17	29187537	29187537	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	ATAD5-93	NM_024857	exon10	c.G3043A	p.E1015K	CCAAATGAGTATT	.	96.0	20.0	123.0	0.0	.	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	37	19	9057171	9057171	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	MUC16-566	NM_024690	exon3	c.A30275G	p.D10092G	TCTGTATCTGTGG	.	224.0	112.0	125.0	0.0	.	Atlas-SNP
ZNF229	7772	hgsc.bcm.edu	37	19	44934458	44934458	+	Silent	SNP	G	G	A	rs185368876		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	ZNF229-94	NM_014518	exon6	c.C498T	p.I166I	TAGACCGATAAGC	.	190.0	104.0	117.0	0.0	G|0.999;A|0.001	Atlas-SNP
BCL3	602	hgsc.bcm.edu	37	19	45260388	45260388	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	BCL3-848	NM_005178	exon4	c.G634A	p.A212T	CACCTGGCGTGCG	.	129.0	67.0	23.0	0.0	.	Atlas-SNP
ZNF134	7693	hgsc.bcm.edu	37	19	58132312	58132312	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	ZNF134-226	NM_003435	exon3	c.A825G	p.L275L	CAATCTAATTGTA	.	119.0	53.0	75.0	0.0	.	Atlas-SNP
ATP13A2	23400	hgsc.bcm.edu	37	1	17318535	17318535	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	ATP13A2-93	NM_022089	exon19	c.C2095T	p.P699S	GGCTGGGCACAGT	.	191.0	174.0	254.0	1.0	.	Atlas-SNP
SLC30A1	7779	hgsc.bcm.edu	37	1	211749358	211749359	+	Nonsense_Mutation	INS	-	-	TAATTATTTCTACAAATGCTTTGCAGGGGTCAGGGAAACATGGATTC	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	SLC30A1-93	NM_021194	exon2	c.896_897insGAATCCATGTTTCCCTGACCCCTGCAAAGCATTTGTAGAAATAATTA	p.N299_S300delinsRIHVSLTPAKHLX	.	.	49.0	11.0	65.0	0.0	.	Pindel
SLC4A11	83959	hgsc.bcm.edu	37	20	3209573	3209573	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	SLC4A11-91	NM_001174090	exon17	c.G2232C	p.W744C	ATGGATCCAAGGC	.	202.0	26.0	218.0	0.0	.	Atlas-SNP
OGFR	11054	hgsc.bcm.edu	37	20	61444569	61444569	+	Silent	SNP	A	A	G	rs3204348	byfrequency;by1000genomes	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	OGFR-68	NM_007346	exon7	c.A1602G	p.P534P	CGAGCCAGCCGAG	.	66.0	4.0	17.0	0.0	A|0.979;G|0.021	Atlas-SNP
MX2	4600	hgsc.bcm.edu	37	21	42749766	42749766	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	MX2-92	NM_002463	exon3	c.C300T	p.C100C	CCCCTGCATTGAC	.	176.0	25.0	144.0	0.0	.	Atlas-SNP
SON	6651	hgsc.bcm.edu	37	21	34926429	34926430	+	Frame_Shift_Ins	INS	-	-	TT	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	SON-97	NM_138927	exon3	c.4892_4893insTT	p.S1631fs	.	.	112.0	17.0	85.0	0.0	.	Atlas-Indel
PATZ1	23598	hgsc.bcm.edu	37	22	31741420	31741420	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	PATZ1-590	NM_032051	exon1	c.G169A	p.A57T	GCACGGCGCGGTG	.	116.0	18.0	34.0	0.0	.	Atlas-SNP
SREBF2	6721	hgsc.bcm.edu	37	22	42271554	42271554	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	SREBF2-154	NM_004599	exon7	c.1211delT	p.L404fs	.	.	79.0	69.0	130.0	0.0	.	Atlas-Indel
SOCS5	9655	hgsc.bcm.edu	37	2	46987103	46987103	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	SOCS5-659	NM_144949	exon2	c.G1434C	p.R478S	AAATAGGACTTTC	.	119.0	99.0	119.0	0.0	.	Atlas-SNP
FNDC3B	64778	hgsc.bcm.edu	37	3	172050900	172050901	+	Frame_Shift_Ins	INS	-	-	ACACTGGAGAGGATTTAACCTGTACTGTG	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	FNDC3B-155	NM_001135095	exon14	c.1576_1577insACACTGGAGAGGATTTAACCTGTACTGTG	p.Y526fs	.	.	29.0	12.0	59.0	0.0	.	Pindel
MTTP	4547	hgsc.bcm.edu	37	4	100512918	100512918	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	MTTP-93	NM_000253	exon7	c.A729G	p.L243L	TTTCCTACAAACC	.	117.0	92.0	130.0	0.0	.	Atlas-SNP
ZFYVE16	9765	hgsc.bcm.edu	37	5	79733160	79733160	+	Missense_Mutation	SNP	A	A	G	rs141062809		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	ZFYVE16-90	NM_001105251	exon4	c.A656G	p.Y219C	ATTCCTATAATTA	.	143.0	49.0	69.0	0.0	A|1.000;G|0.000	Atlas-SNP
MSH3	4437	hgsc.bcm.edu	37	5	79950715	79950715	+	Missense_Mutation	SNP	G	G	C	rs144776112		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	MSH3-661	NM_002439	exon1	c.G169C	p.A57P	GCAGCGGCCGCAG	.	48.0	12.0	8.0	0.0	G|0.834;C|0.166	Atlas-SNP
MSH3	4437	hgsc.bcm.edu	37	5	79950718	79950718	+	Missense_Mutation	SNP	G	G	C	rs148550291		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	MSH3-661	NM_002439	exon1	c.G172C	p.A58P	GCGGCCGCAGCGG	.	45.0	8.0	6.0	0.0	G|0.837;C|0.162	Atlas-SNP
MSH3	4437	hgsc.bcm.edu	37	5	79950724	79950724	+	Missense_Mutation	SNP	G	G	C	rs2001675		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	MSH3-661	NM_002439	exon1	c.G178C	p.A60P	GCAGCGGCCGCAG	.	45.0	5.0	8.0	0.0	G|0.177;C|0.823	Atlas-SNP
ZNF716	441234	hgsc.bcm.edu	37	7	57529562	57529562	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	ZNF716-24	NM_001159279	exon4	c.A1395T	p.K465N	CTACAAATGTGAA	.	48.0	4.0	40.0	0.0	.	Atlas-SNP
TAS2R41	259287	hgsc.bcm.edu	37	7	143175367	143175367	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	TAS2R41-92	NM_176883	exon1	c.G402T	p.L134L	GCTCCTGTTGGGC	.	93.0	42.0	90.0	0.0	.	Atlas-SNP
SP8	221833	hgsc.bcm.edu	37	7	20824941	20824943	+	In_Frame_Del	DEL	GCC	GCC	-	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	GCC	GCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	SP8-91	NM_182700	exon2	c.494_496del	p.165_166del	.	.	59.0	32.0	10.0	0.0	.	Atlas-Indel
HR	55806	hgsc.bcm.edu	37	8	21983231	21983231	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	HR-154	NM_018411	exon4	c.C1420A	p.Q474K	TGGCCTGGCCATC	.	96.0	5.0	120.0	0.0	.	Atlas-SNP
CHD7	55636	hgsc.bcm.edu	37	8	61766037	61766037	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	CHD7-141	NM_017780	exon31	c.G6753A	p.S2251S	TAAGTCGGAAGAG	.	169.0	142.0	219.0	0.0	.	Atlas-SNP
EPPK1	83481	hgsc.bcm.edu	37	8	144940551	144940551	+	Missense_Mutation	SNP	C	C	T	rs201579633		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	EPPK1-25	NM_031308	exon1	c.G6871A	p.V2291M	CCACCACGCCCGC	.	118.0	22.0	12.0	0.0	.	Atlas-SNP
SLC44A1	23446	hgsc.bcm.edu	37	9	108120655	108120655	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	SLC44A1-94	NM_080546	exon7	c.G701A	p.R234K	TAATCAGGTATAT	.	91.0	45.0	99.0	0.0	.	Atlas-SNP
PTGS1	5742	hgsc.bcm.edu	37	9	125133492	125133497	+	In_Frame_Del	DEL	TCCTGC	TCCTGC	-	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	TCCTGC	TCCTGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	PTGS1-228	NM_080591	exon2	c.34_39del	p.12_13del	.	.	36.0	12.0	11.0	0.0	.	Atlas-Indel
MAMLD1	10046	hgsc.bcm.edu	37	X	149678251	149678251	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	.	MAMLD1-130	NM_001177466	exon5	c.G2229C	p.R743S	GATCAGGTCTTAT	.	75.0	62.0	96.0	0.0	.	Atlas-SNP
