Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Algorithm
OPTN	10133	hgsc.bcm.edu	37	10	13152419	13152419	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	OPTN-70	NM_021980	exon3	c.T312A	p.N104K	TGAGAATGAGAAA	.	256.0	25.0	287.0	0.0	.	Atlas-SNP
FAM171A1	221061	hgsc.bcm.edu	37	10	15256461	15256461	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	FAM171A1-138	NM_001010924	exon8	c.C1126G	p.P376A	ACAGCGGGCCAGG	.	87.0	12.0	70.0	0.0	.	Atlas-SNP
EXPH5	23086	hgsc.bcm.edu	37	11	108382838	108382838	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	EXPH5-95	NM_015065	exon6	c.3397delT	p.S1133fs	.	.	75.0	22.0	98.0	0.0	.	Atlas-Indel
FAM194B	220081	hgsc.bcm.edu	37	13	46170719	46170719	+	Missense_Mutation	SNP	C	C	T	rs201041085	byfrequency	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	FAM194B-68	NM_182542	exon3	c.G422A	p.G141E	TCCTTCCCCAGAT	.	21.0	4.0	52.0	0.0	C|0.909;T|0.091	Atlas-SNP
CRTC3	64784	hgsc.bcm.edu	37	15	91150615	91150615	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	CRTC3-393	NM_022769	exon6	c.A482G	p.N161S	GGACCAATTCTGA	.	55.0	10.0	56.0	0.0	.	Atlas-SNP
HRC	3270	hgsc.bcm.edu	37	19	49657751	49657751	+	Silent	SNP	A	A	G	rs142699460	byfrequency	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	HRC-91	NM_002152	exon1	c.T744C	p.D248D	ATCATCATCGTCA	.	128.0	13.0	72.0	0.0	A|0.998;G|0.002	Atlas-SNP
EVI5	7813	hgsc.bcm.edu	37	1	93091457	93091457	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	EVI5-136	NM_005665	exon13	c.C1514A	p.A505E	AGCCTTGCAATAT	.	99.0	5.0	109.0	0.0	.	Atlas-SNP
SPRR3	6707	hgsc.bcm.edu	37	1	152975739	152975739	+	Silent	SNP	T	T	A	rs17851565	byfrequency	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	SPRR3-45	NM_001097589	exon2	c.T243A	p.G81G	GCCAGGTTGTACC	.	160.0	12.0	185.0	0.0	A|0.010;C|0.001;T|0.988	Atlas-SNP
EML6	400954	hgsc.bcm.edu	37	2	55074739	55074740	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	.	NM_001039753	exon8	c.1166_1167insT	p.S389fs	.	.	102.0	20.0	83.0	0.0	.	Atlas-Indel
ZNF131	7690	hgsc.bcm.edu	37	5	43161449	43161449	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	ZNF131-90	NM_003432	exon5	c.C470T	p.S157L	CTGAGTCATTGCC	.	228.0	51.0	160.0	0.0	.	Atlas-SNP
PTCHD4	442213	hgsc.bcm.edu	37	6	47976553	47976553	+	Missense_Mutation	SNP	C	C	T	rs191919500	by1000genomes	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	.	NM_207499	exon2	c.G724A	p.V242M	TCAGCACGAGGCT	.	182.0	43.0	204.0	0.0	C|0.999;T|0.000	Atlas-SNP
KAT6A	7994	hgsc.bcm.edu	37	8	41798484	41798484	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	.	NM_001099413	exon16	c.G2915A	p.R972H	CTGTAGCGACGGG	.	74.0	4.0	55.0	0.0	.	Atlas-SNP
SSX1	6756	hgsc.bcm.edu	37	X	48123217	48123217	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	SSX1-522	NM_005635	exon6	c.A331T	p.I111F	ATAAAGATCATGC	.	210.0	29.0	169.0	0.0	.	Atlas-SNP
SUPT20HL1	100130302	hgsc.bcm.edu	37	X	24382373	24382374	+	In_Frame_Ins	INS	-	-	TGCTGCTGC	novel		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	.	NM_001136234	exon1	c.1496_1497insTGCTGCTGC	p.I499delinsIAAA	.	.	439.0	91.0	331.0	0.0	.	Atlas-Indel
