Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Algorithm
ESPL1	9700	hgsc.bcm.edu	37	12	53663137	53663137	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	ESPL1-228	NM_012291	exon3	c.C411T	p.P137P	TGCTCCCCAGGAC	.	63.0	29.0	51.0	0.0	.	Atlas-SNP
PPFIA2	8499	hgsc.bcm.edu	37	12	82147977	82147977	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	PPFIA2-231	NM_003625	exon3	c.G24A	p.T8T	ATTAATCGTGGGC	.	186.0	74.0	117.0	0.0	.	Atlas-SNP
ASPG	374569	hgsc.bcm.edu	37	14	104573592	104573592	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	.	NM_001080464	exon12	c.A1343C	p.E448A	ACACAGAGGCAGT	.	598.0	37.0	220.0	0.0	.	Atlas-SNP
TP53	7157	hgsc.bcm.edu	37	17	7577114	7577114	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	TP53,NS,carcinoma,0	TP53-70225	NM_001126114	exon8	c.G824C	p.C275S	CAGGCACAAACAC	.	57.0	44.0	97.0	0.0	.	Atlas-SNP
SMCR7	125170	hgsc.bcm.edu	37	17	18168068	18168068	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	SMCR7-90	NM_148886	exon4	c.G1388T	p.G463V	CCGAGGGGCTGCT	.	45.0	43.0	35.0	0.0	.	Atlas-SNP
PELP1	27043	hgsc.bcm.edu	37	17	4576216	4576217	+	In_Frame_Ins	INS	-	-	GGCATGGGGCCTGCTGAA	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	PELP1-24	NM_014389	exon16	c.2070_2071insTTCAGCAGGCCCCATGCC	p.P690delinsPSAGPMP	.	.	47.0	10.0	27.0	0.0	.	Pindel
ASXL3	80816	hgsc.bcm.edu	37	18	31323005	31323005	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	ASXL3-49	NM_030632	exon12	c.C3193T	p.R1065W	CAAGCTCGGGCCC	.	25.0	21.0	27.0	0.0	.	Atlas-SNP
CEP89	84902	hgsc.bcm.edu	37	19	33444556	33444556	+	Missense_Mutation	SNP	T	T	C	rs73579706	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	CEP89-94	NM_032816	exon4	c.A457G	p.S153G	CATCACTGTGGCC	.	124.0	8.0	54.0	0.0	T|0.500;C|0.500	Atlas-SNP
ZMPSTE24	10269	hgsc.bcm.edu	37	1	40758252	40758252	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	ZMPSTE24-226	NM_005857	exon10	c.G1339A	p.V447I	TTCCCTGTTTCTG	.	70.0	52.0	90.0	0.0	.	Atlas-SNP
CGN	57530	hgsc.bcm.edu	37	1	151503099	151503099	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	CGN-93	NM_020770	exon13	c.G2448A	p.Q816Q	GGAGCAGCAGACA	.	74.0	56.0	38.0	0.0	.	Atlas-SNP
HMCN1	83872	hgsc.bcm.edu	37	1	186031090	186031090	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	HMCN1-113	NM_031935	exon47	c.G7420A	p.V2474I	CTTTCAGTATTAG	.	29.0	26.0	37.0	0.0	.	Atlas-SNP
RRBP1	6238	hgsc.bcm.edu	37	20	17602360	17602360	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	RRBP1-92	NM_001042576	exon16	c.C2000A	p.P667Q	GCTGGCGGGTGCT	.	66.0	4.0	43.0	0.0	.	Atlas-SNP
ERGIC3	51614	hgsc.bcm.edu	37	20	34129865	34129865	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	ERGIC3-585	NM_198398	exon1	c.C19T	p.L7L	GGGAAGCTGAAGC	.	137.0	55.0	38.0	0.0	.	Atlas-SNP
DDX27	55661	hgsc.bcm.edu	37	20	47855847	47855847	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	DDX27-537	NM_017895	exon16	c.G1962C	p.Q654H	GTTCCAGACCAAA	.	17.0	7.0	21.0	0.0	.	Atlas-SNP
NEFH	4744	hgsc.bcm.edu	37	22	29885594	29885594	+	Silent	SNP	A	A	T	rs79235463	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	NEFH-90	NM_021076	exon4	c.A1965T	p.P655P	GTCCCCAGAGAAG	.	391.0	54.0	353.0	0.0	A|0.500;T|0.500	Atlas-SNP
TTC27	55622	hgsc.bcm.edu	37	2	33036125	33036125	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	TTC27-90	NM_001193509	exon17	c.G1883T	p.G628V	TTGATGGGATGAC	.	73.0	4.0	122.0	0.0	.	Atlas-SNP
TMEM247	388946	hgsc.bcm.edu	37	2	46707808	46707808	+	Missense_Mutation	SNP	C	C	G	rs74318890		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	.	NM_001145051	exon2	c.C382G	p.Q128E	CAGCGGCAGCGGC	.	278.0	32.0	137.0	0.0	G|1.000;|0.000	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	37	3	41266137	41266137	+	Missense_Mutation	SNP	C	C	T	rs121913409	bycluster	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	CTNNB1,NS,carcinoma,+1	CTNNB1-24361	NM_001098210	exon3	c.C134T	p.S45F	CTCCTTCTCTGAG	.	96.0	77.0	151.0	0.0	.	Atlas-SNP
CRYBG3	131544	hgsc.bcm.edu	37	3	97596823	97596823	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	CRYBG3-68	NM_153605	exon4	c.C6785T	p.P2262L	AGGAACCAGTGTC	.	76.0	52.0	84.0	0.0	.	Atlas-SNP
DAXX	1616	hgsc.bcm.edu	37	6	33288323	33288323	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	DAXX-731	NM_001254717	exon3	c.G860C	p.R287P	TTTTCCCGAAGGC	.	21.0	15.0	26.0	0.0	.	Atlas-SNP
ATP6V0A4	50617	hgsc.bcm.edu	37	7	138413506	138413506	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	ATP6V0A4-91	NM_130840	exon17	c.G2010C	p.Q670H	CCTTACCTGGGAT	.	108.0	49.0	89.0	0.0	.	Atlas-SNP
GTPBP10	85865	hgsc.bcm.edu	37	7	89982277	89982278	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	GTPBP10-68	NM_033107	exon2	c.180_181del	p.60_61del	.	.	166.0	65.0	128.0	0.0	.	Atlas-Indel
PTPRD	5789	hgsc.bcm.edu	37	9	8528683	8528683	+	Missense_Mutation	SNP	C	C	A	rs149175517	alternate_allele	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	PTPRD-912	NM_001040712	exon4	c.G449T	p.S150I	TTACCACTGGCTG	.	72.0	61.0	104.0	0.0	C|1.000;T|0.000	Atlas-SNP
