Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Algorithm
BICC1	80114	hgsc.bcm.edu	37	10	60273078	60273078	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	BICC1-72	NM_001080512	exon1	c.G175T	p.E59X	AAACTTGAGGCCA	.	477.0	24.0	187.0	0.0	.	Atlas-SNP
KIF11	3832	hgsc.bcm.edu	37	10	94397209	94397209	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	KIF11-227	NM_004523	exon16	c.A2067G	p.L689L	TGAACTACAAGAA	.	212.0	17.0	155.0	0.0	.	Atlas-SNP
PIK3AP1	118788	hgsc.bcm.edu	37	10	98408466	98408466	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	PIK3AP1-519	NM_152309	exon7	c.G1135T	p.A379S	TCTCAGCGATGGT	.	295.0	60.0	150.0	0.0	.	Atlas-SNP
PPRC1	23082	hgsc.bcm.edu	37	10	103901266	103901266	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	PPRC1-227	NM_015062	exon5	c.C3001G	p.P1001A	CCACCTCCTTTGC	.	95.0	10.0	85.0	0.0	.	Atlas-SNP
DRD4	1815	hgsc.bcm.edu	37	11	639873	639873	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	DRD4-90	NM_000797	exon3	c.G624A	p.M208I	GCTCATGCTGCTG	.	22.0	7.0	10.0	0.0	.	Atlas-SNP
NELL1	4745	hgsc.bcm.edu	37	11	21250963	21250963	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	NELL1-155	NM_006157	exon14	c.C1512A	p.C504X	CACCTGCAAACCG	.	277.0	36.0	235.0	0.0	.	Atlas-SNP
FERMT3	83706	hgsc.bcm.edu	37	11	63978534	63978534	+	Missense_Mutation	SNP	C	C	G	rs78810429	byfrequency;alternate_allele	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	FERMT3-23	NM_178443	exon4	c.C405G	p.H135Q	CCGGCACCCCGAG	.	88.0	22.0	66.0	0.0	C|0.993;T|0.007	Atlas-SNP
PYGM	5837	hgsc.bcm.edu	37	11	64518843	64518843	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	PYGM-92	NM_001164716	exon14	c.C1659T	p.L553L	GACACGGAGGCGG	.	205.0	52.0	142.0	0.0	.	Atlas-SNP
HTR3A	3359	hgsc.bcm.edu	37	11	113857492	113857492	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	HTR3A-90	NM_213621	exon7	c.C976A	p.P326T	GAGAAACCCGCCC	.	136.0	12.0	132.0	0.0	.	Atlas-SNP
PRB3	5544	hgsc.bcm.edu	37	12	11421070	11421070	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	PRB3-1	NM_006249	exon3	c.G113T	p.G38V	CGTCGTCCTTCTG	.	25.0	4.0	18.0	0.0	.	Atlas-SNP
PRB4	5545	hgsc.bcm.edu	37	12	11461804	11461804	+	Missense_Mutation	SNP	C	C	A	rs150367358	byfrequency;alternate_allele	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	PRB4-91	NM_001261399	exon3	c.G113T	p.G38V	CGTCGTCCTTCTG	.	56.0	4.0	38.0	0.0	C|0.999;T|0.001	Atlas-SNP
PLEKHA5	54477	hgsc.bcm.edu	37	12	19499950	19499950	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	PLEKHA5-227	NM_001256787	exon18	c.G2180T	p.R727L	CACCTCGTCCTCC	.	113.0	15.0	75.0	0.0	.	Atlas-SNP
OVCH1	341350	hgsc.bcm.edu	37	12	29604304	29604304	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	OVCH1-210	NM_183378	exon22	c.A2729G	p.E910G	TGTCTTTCTTCAT	.	78.0	23.0	64.0	0.0	.	Atlas-SNP
SCN8A	6334	hgsc.bcm.edu	37	12	52188154	52188154	+	Splice_Site	SNP	G	G	T	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	SCN8A-29	NM_001177984	exon25	c.4402-1G>T	.	TCCCCAGAACAAA	.	97.0	18.0	60.0	0.0	.	Atlas-SNP
MYBPC1	4604	hgsc.bcm.edu	37	12	102043128	102043128	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	MYBPC1-94	NM_001254721	exon12	c.A1155G	p.G385G	AGAGGGAGCAACA	.	126.0	22.0	101.0	0.0	.	Atlas-SNP
HECTD4	283450	hgsc.bcm.edu	37	12	112690234	112690234	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	.	NM_001109662	exon23	c.C3144A	p.R1048R	CTGAGCGCGAACT	.	62.0	5.0	50.0	0.0	.	Atlas-SNP
PCBP2	5094	hgsc.bcm.edu	37	12	53856277	53856278	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	PCBP2-226	NM_001128912	exon8	c.505_506insC	p.S169fs	.	.	86.0	20.0	81.0	0.0	.	Atlas-Indel
FREM2	341640	hgsc.bcm.edu	37	13	39452353	39452353	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	FREM2-100	NM_207361	exon22	c.T8754C	p.F2918F	GGTGTTTCTATGC	.	133.0	20.0	155.0	0.0	.	Atlas-SNP
TBPL2	387332	hgsc.bcm.edu	37	14	55903342	55903342	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	TBPL2-90	NM_199047	exon2	c.C545A	p.S182Y	GTTATGGATGCCA	.	342.0	40.0	218.0	0.0	.	Atlas-SNP
TGFB3	7043	hgsc.bcm.edu	37	14	76447102	76447102	+	Silent	SNP	T	T	G	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	TGFB3-524	NM_003239	exon1	c.A135C	p.G45G	GATCTGTCCCCTA	.	339.0	62.0	194.0	0.0	.	Atlas-SNP
CEP128	145508	hgsc.bcm.edu	37	14	81046735	81046735	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	CEP128-91	NM_152446	exon19	c.G2839A	p.E947K	CCATTTCTTCATC	.	23.0	5.0	32.0	0.0	.	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	37	14	105415287	105415287	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	AHNAK2-47	NM_138420	exon7	c.C6501G	p.A2167A	GCCTGGGGCAGAC	.	235.0	96.0	140.0	0.0	.	Atlas-SNP
USP10	9100	hgsc.bcm.edu	37	16	84806251	84806251	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	USP10-636	NM_001272075	exon13	c.C2115G	p.I705M	GCTTATCAAAAAT	.	124.0	13.0	140.0	0.0	.	Atlas-SNP
NF1	4763	hgsc.bcm.edu	37	17	29664421	29664421	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	NF1-3353	NM_000267	exon42	c.G6400T	p.E2134X	CTGACAGAGTTCT	.	47.0	32.0	55.0	0.0	.	Atlas-SNP
ITGA3	3675	hgsc.bcm.edu	37	17	48165662	48165662	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	ITGA3-229	NM_002204	exon25	c.A3119C	p.Q1040P	AGAGCCAGCCGTC	.	166.0	18.0	142.0	0.0	.	Atlas-SNP
TNRC6C	57690	hgsc.bcm.edu	37	17	76067213	76067213	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	TNRC6C-24	NM_018996	exon7	c.G2826C	p.R942R	GAGCCGGCTGATC	.	331.0	27.0	187.0	0.0	.	Atlas-SNP
TP53	7157	hgsc.bcm.edu	37	17	7574011	7574012	+	Frame_Shift_Ins	INS	-	-	CGAAG	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	TP53,NS,carcinoma,-1	TP53-70225	NM_001126118	exon9	c.899_900insCTTCG	p.E300fs	.	.	118.0	25.0	176.0	0.0	.	Atlas-Indel
SEH1L	81929	hgsc.bcm.edu	37	18	12986994	12986994	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	SEH1L-90	NM_001013437	exon9	c.C1204A	p.H402N	TATCCTCACCCTC	.	66.0	26.0	74.0	0.0	.	Atlas-SNP
SMAD7	4092	hgsc.bcm.edu	37	18	46447841	46447841	+	Silent	SNP	G	G	A	rs141213977	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	SMAD7-414	NM_005904	exon4	c.C1182T	p.T394T	CTGCACGGTAAAG	.	167.0	54.0	165.0	0.0	G|0.999;A|0.001	Atlas-SNP
C19orf57	79173	hgsc.bcm.edu	37	19	14000524	14000524	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	C19orf57-93	NM_024323	exon6	c.G1145A	p.R382K	AAGGCCCTCCTGT	.	51.0	10.0	24.0	0.0	.	Atlas-SNP
PKN1	5585	hgsc.bcm.edu	37	19	14552087	14552087	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	PKN1-1481	NM_213560	exon2	c.C172T	p.L58L	CTGAAGCTGAAGG	.	91.0	8.0	9.0	0.0	.	Atlas-SNP
GIPC1	10755	hgsc.bcm.edu	37	19	14591159	14591159	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	GIPC1-226	NM_202470	exon4	c.C613T	p.R205C	AGGTACGGCCTCG	.	312.0	42.0	49.0	0.0	.	Atlas-SNP
NFKBID	84807	hgsc.bcm.edu	37	19	36380791	36380791	+	Splice_Site	DEL	C	C	-	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	NFKBID-90	NM_139239	exon12	c.888+2G>-	.	.	.	127.0	54.0	46.0	0.0	.	Atlas-Indel
UBR4	23352	hgsc.bcm.edu	37	1	19518980	19518980	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	UBR4,NS,NS,+2	UBR4-612	NM_020765	exon10	c.G1198T	p.G400C	CCTCACCACCAGC	.	210.0	17.0	179.0	0.0	.	Atlas-SNP
TIE1	7075	hgsc.bcm.edu	37	1	43779576	43779576	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	TIE1-1404	NM_001253357	exon14	c.C2211A	p.T737T	TTTAACCCTGGTG	.	300.0	25.0	174.0	0.0	.	Atlas-SNP
C1orf87	127795	hgsc.bcm.edu	37	1	60499262	60499262	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	C1orf87-154	NM_152377	exon7	c.G915T	p.L305F	AATCTCCAACAGA	.	150.0	24.0	135.0	0.0	.	Atlas-SNP
COL11A1	1301	hgsc.bcm.edu	37	1	103487285	103487285	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	COL11A1-586	NM_001854	exon9	c.G1286C	p.G429A	GGTTCTCCTTTCT	.	129.0	48.0	110.0	0.0	.	Atlas-SNP
RPRD2	23248	hgsc.bcm.edu	37	1	150444740	150444740	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	RPRD2-23	NM_015203	exon11	c.G3316A	p.V1106I	CAGACCGTAGAGT	.	52.0	8.0	54.0	0.0	.	Atlas-SNP
DNAH14	127602	hgsc.bcm.edu	37	1	225528307	225528307	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	DNAH14-23	NM_001373	exon67	c.G10303C	p.D3435H	TTAGAAGATCAAC	.	213.0	26.0	212.0	0.0	.	Atlas-SNP
ECE1	1889	hgsc.bcm.edu	37	1	21599251	21599252	+	Frame_Shift_Ins	INS	-	-	GT	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	ECE1-93	NM_001113347	exon2	c.398_399insAC	p.R133fs	.	.	322.0	88.0	217.0	0.0	.	Atlas-Indel
HSPG2	3339	hgsc.bcm.edu	37	1	22191465	22191467	+	In_Frame_Del	DEL	GGA	GGA	-	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	GGA	GGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	HSPG2-141	NM_005529	exon36	c.4496_4498del	p.1499_1500del	.	.	96.0	29.0	10.0	0.0	.	Atlas-Indel
BPIFB6	128859	hgsc.bcm.edu	37	20	31626724	31626724	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	.	NM_174897	exon9	c.C856A	p.L286M	GGTGAGCTGCCCC	.	151.0	12.0	108.0	0.0	.	Atlas-SNP
PCK1	5105	hgsc.bcm.edu	37	20	56136550	56136550	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	PCK1-227	NM_002591	exon2	c.G83C	p.R28T	CAGTGAGGGAGTT	.	71.0	14.0	71.0	0.0	.	Atlas-SNP
CDH4	1002	hgsc.bcm.edu	37	20	59829909	59829909	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	CDH4-282	NM_001794	exon2	c.G85A	p.E29K	ACTAGAGAGACCT	.	81.0	17.0	102.0	0.0	.	Atlas-SNP
C21orf62	56245	hgsc.bcm.edu	37	21	34166441	34166441	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	C21orf62-91	NM_001162495	exon4	c.C292G	p.L98V	GGACCAGCGTGAA	.	134.0	47.0	154.0	0.0	.	Atlas-SNP
ZBTB21	49854	hgsc.bcm.edu	37	21	43412530	43412530	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	.	NM_001098402	exon3	c.G1675C	p.A559P	GACCTGCTGTTGA	.	132.0	39.0	86.0	0.0	.	Atlas-SNP
NF2	4771	hgsc.bcm.edu	37	22	30057313	30057313	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	NF2-4696	NM_000268	exon8	c.G795A	p.S265S	CATCTCGTACAGT	.	62.0	8.0	56.0	0.0	.	Atlas-SNP
SOX10	6663	hgsc.bcm.edu	37	22	38374133	38374133	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	SOX10-650	NM_006941	exon3	c.C438T	p.N146N	ACTTTCGTTCAGC	.	46.0	5.0	45.0	0.0	.	Atlas-SNP
TMEM214	54867	hgsc.bcm.edu	37	2	27257050	27257050	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	TMEM214-115	NM_001083590	exon2	c.G267A	p.K89K	GAACAAGAAGCAG	.	226.0	43.0	177.0	0.0	.	Atlas-SNP
PLB1	151056	hgsc.bcm.edu	37	2	28836923	28836923	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	PLB1-141	NM_001170585	exon43	c.G3122T	p.R1041L	CCCCTCGGAATAG	.	65.0	4.0	50.0	0.0	.	Atlas-SNP
DNAH6	1768	hgsc.bcm.edu	37	2	84848429	84848429	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	DNAH6-69	NM_001370	exon25	c.T3907A	p.Y1303N	GCTGACTATCAGG	.	261.0	17.0	191.0	0.0	.	Atlas-SNP
DPP10	57628	hgsc.bcm.edu	37	2	116447467	116447467	+	Silent	SNP	C	C	T	rs151071213	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	DPP10-142	NM_001178036	exon8	c.C396T	p.Y132Y	GCAGTACGCGGCC	.	71.0	15.0	53.0	0.0	C|0.999;T|0.001	Atlas-SNP
LCT	3938	hgsc.bcm.edu	37	2	136590717	136590717	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	LCT-101	NM_002299	exon2	c.G684C	p.E228D	CAGGAGCTCCGGG	.	46.0	7.0	41.0	0.0	.	Atlas-SNP
DOCK10	55619	hgsc.bcm.edu	37	2	225717140	225717141	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	DOCK10-92	NM_014689	exon18	c.2096_2097del	p.699_699del	.	.	46.0	10.0	47.0	0.0	.	Atlas-Indel
CCR3	1232	hgsc.bcm.edu	37	3	46306920	46306920	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	CCR3-660	NM_178328	exon3	c.A334C	p.I112L	TTCTGGATCCACT	.	287.0	109.0	336.0	0.0	.	Atlas-SNP
STX19	415117	hgsc.bcm.edu	37	3	93733581	93733581	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	STX19-90	NM_001001850	exon2	c.C533G	p.S178C	TCTTCAGACATCT	.	50.0	25.0	71.0	0.0	.	Atlas-SNP
SEC22A	26984	hgsc.bcm.edu	37	3	122990434	122990434	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	SEC22A-91	NM_012430	exon7	c.C789G	p.I263M	CTTAATCTGTCTA	.	45.0	9.0	47.0	0.0	.	Atlas-SNP
CRIPAK	285464	hgsc.bcm.edu	37	4	1388848	1388848	+	Silent	SNP	A	A	C	rs74511366	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	CRIPAK-90	NM_175918	exon1	c.A549C	p.P183P	CGTGCCAACGTGG	.	291.0	17.0	25.0	0.0	A|0.993;C|0.000;G|0.006	Atlas-SNP
ART3	419	hgsc.bcm.edu	37	4	77033649	77033649	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	ART3-92	NM_001179	exon11	c.A1114G	p.I372V	TCTGCTATAAATC	.	44.0	4.0	39.0	0.0	.	Atlas-SNP
ENPEP	2028	hgsc.bcm.edu	37	4	111409785	111409785	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	ENPEP-157	NM_001977	exon2	c.A733G	p.I245V	TATACAATATCTA	.	74.0	15.0	52.0	0.0	.	Atlas-SNP
TDO2	6999	hgsc.bcm.edu	37	4	156830150	156830150	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	TDO2-514	NM_005651	exon5	c.G415C	p.D139H	GCCTTGGACTTCA	.	58.0	23.0	39.0	0.0	.	Atlas-SNP
NSUN7	79730	hgsc.bcm.edu	37	4	40810424	40810426	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	AGA	AGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	NSUN7-90	NM_024677	exon12	c.1624_1626del	p.542_542del	.	.	120.0	25.0	148.0	0.0	.	Atlas-Indel
PDLIM4	8572	hgsc.bcm.edu	37	5	131607853	131607853	+	Silent	SNP	G	G	A	rs1140552	bycluster	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	PDLIM4-91	NM_003687	exon7	c.G924A	p.A308A	CAAGGCGCGCGTG	.	206.0	55.0	116.0	0.0	G|1.000;A|0.000	Atlas-SNP
RBM27	54439	hgsc.bcm.edu	37	5	145631438	145631438	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	RBM27-70	NM_018989	exon9	c.G1444C	p.D482H	GTTCCAGGTAAGC	.	98.0	28.0	66.0	0.0	.	Atlas-SNP
RAD50	10111	hgsc.bcm.edu	37	5	131940646	131940647	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	RAD50-229	NM_005732	exon16	c.2672_2673del	p.891_891del	.	.	167.0	41.0	172.0	0.0	.	Atlas-Indel
F13A1	2162	hgsc.bcm.edu	37	6	6175004	6175004	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	F13A1-519	NM_000129	exon12	c.T1556C	p.V519A	ATGTCAACGTTGG	.	309.0	83.0	271.0	0.0	.	Atlas-SNP
HLA-A	3105	hgsc.bcm.edu	37	6	29910566	29910566	+	Missense_Mutation	SNP	G	G	A	rs41545116	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	HLA-A-92	NM_002116	exon2	c.G106A	p.V36M	ACATCCGTGTCCC	.	208.0	17.0	22.0	0.0	A|0.077;G|0.923	Atlas-SNP
NOTCH4	4855	hgsc.bcm.edu	37	6	32166275	32166275	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	NOTCH4-1321	NM_004557	exon26	c.C4679T	p.A1560V	GGGAGCGCCCCAC	.	79.0	27.0	65.0	0.0	.	Atlas-SNP
FBXO9	26268	hgsc.bcm.edu	37	6	52960318	52960318	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	FBXO9-227	NM_012347	exon11	c.T1091G	p.L364R	AACCACTTGACTA	.	56.0	7.0	50.0	0.0	.	Atlas-SNP
MLIP	90523	hgsc.bcm.edu	37	6	54095603	54095603	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	MLIP-99	NM_138569	exon11	c.C1205T	p.T402I	CACAGACCCTCTC	.	133.0	31.0	104.0	0.0	.	Atlas-SNP
IBTK	25998	hgsc.bcm.edu	37	6	82921272	82921272	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	IBTK-92	NM_015525	exon14	c.T2309G	p.V770G	ATGGTCACGTCAC	.	299.0	67.0	340.0	0.0	.	Atlas-SNP
FAM184A	79632	hgsc.bcm.edu	37	6	119337933	119337933	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	FAM184A-519	NM_024581	exon5	c.G1509T	p.R503S	CTTATCCCTAATT	.	76.0	4.0	66.0	0.0	.	Atlas-SNP
SLC2A12	154091	hgsc.bcm.edu	37	6	134373567	134373567	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	SLC2A12-91	NM_145176	exon1	c.A52T	p.T18S	CGGCTGTCCCCTT	.	52.0	16.0	42.0	0.0	.	Atlas-SNP
ETV1	2115	hgsc.bcm.edu	37	7	13971355	13971355	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	ETV1-659	NM_001163147	exon8	c.G574A	p.E192K	AGGGTTCAGAAAG	.	267.0	18.0	250.0	0.0	.	Atlas-SNP
AMPH	273	hgsc.bcm.edu	37	7	38466556	38466556	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	AMPH-95	NM_139316	exon15	c.C1213G	p.Q405E	TTACCTGTGTGAA	.	118.0	20.0	144.0	0.0	.	Atlas-SNP
ZMIZ2	83637	hgsc.bcm.edu	37	7	44800087	44800087	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	ZMIZ2-137	NM_174929	exon7	c.A1057T	p.T353S	CCCATGACCCCAA	.	320.0	45.0	247.0	0.0	.	Atlas-SNP
ZNF804B	219578	hgsc.bcm.edu	37	7	88964602	88964602	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	ZNF804B-101	NM_181646	exon4	c.T2306C	p.I769T	ATGATATAACAAA	.	220.0	68.0	202.0	0.0	.	Atlas-SNP
TSTA3	7264	hgsc.bcm.edu	37	8	144695922	144695922	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	TSTA3-91	NM_003313	exon8	c.C729T	p.S243S	CCCACCGGAGAGG	.	223.0	49.0	128.0	0.0	.	Atlas-SNP
OR2S2	56656	hgsc.bcm.edu	37	9	35958062	35958062	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	OR2S2-68	NM_019897	exon1	c.G34C	p.G12R	CGAACCCCATCAC	.	104.0	13.0	102.0	0.0	.	Atlas-SNP
DBH	1621	hgsc.bcm.edu	37	9	136501584	136501584	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	DBH-516	NM_000787	exon1	c.G91T	p.V31F	TTCCTGGTCATCC	.	100.0	5.0	36.0	0.0	.	Atlas-SNP
ENTPD2	954	hgsc.bcm.edu	37	9	139943400	139943400	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	ENTPD2-90	NM_203468	exon8	c.A1277T	p.Q426L	TTCTTCTGGAAGA	.	21.0	21.0	6.0	0.0	.	Atlas-SNP
ZCCHC6	79670	hgsc.bcm.edu	37	9	88954993	88954994	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	AA	AA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	ZCCHC6-92	NM_024617	exon8	c.1166_1167del	p.389_389del	.	.	52.0	17.0	64.0	0.0	.	Atlas-Indel
RBM3	5935	hgsc.bcm.edu	37	X	48433575	48433575	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	RBM3-131	NM_006743	exon2	c.T7A	p.S3T	ATGTCCTCTGAAG	.	43.0	19.0	42.0	0.0	.	Atlas-SNP
RRAGB	10325	hgsc.bcm.edu	37	X	55758011	55758011	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	RRAGB-130	NM_016656	exon6	c.C592G	p.R198G	GATCAACGGGACC	.	29.0	9.0	52.0	0.0	.	Atlas-SNP
