Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Algorithm
MUC5B	727897	hgsc.bcm.edu	37	11	1253976	1253976	+	Missense_Mutation	SNP	A	A	G	rs76956995		TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	.	NM_002458	exon17	c.A2041G	p.S681G	CAGCTCAGCGACT	.	81.0	5.0	25.0	0.0	.	Atlas-SNP
MUC5B	727897	hgsc.bcm.edu	37	11	1253980	1253980	+	Missense_Mutation	SNP	A	A	G	rs202127660		TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	.	NM_002458	exon17	c.A2045G	p.D682G	TCAGCGACTGGAG	.	77.0	4.0	22.0	0.0	.	Atlas-SNP
KRTAP4-9	100132386	hgsc.bcm.edu	37	17	39262096	39262096	+	Silent	SNP	C	C	T	rs76327324	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	.	NM_001146041	exon1	c.C456T	p.P152P	CCGCCCCAGCTGC	.	142.0	10.0	16.0	0.0	C|0.500;T|0.500	Atlas-SNP
TIE1	7075	hgsc.bcm.edu	37	1	43775126	43775126	+	Missense_Mutation	SNP	C	C	T	rs140823224	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	TIE1-1404	NM_001253357	exon9	c.C1121T	p.A374V	TTCTTGCGGACAG	.	217.0	11.0	262.0	0.0	C|1.000;T|0.000	Atlas-SNP
ZNF638	27332	hgsc.bcm.edu	37	2	71650459	71650459	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	ZNF638-94	NM_014497	exon22	c.C3815G	p.S1272W	CTGTTTCGGAAAT	.	159.0	8.0	172.0	0.0	.	Atlas-SNP
COL6A6	131873	hgsc.bcm.edu	37	3	130361853	130361853	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	COL6A6-76	NM_001102608	exon30	c.T5213A	p.V1738E	AGTATGTGCGAGA	.	111.0	39.0	106.0	0.0	.	Atlas-SNP
OR2J3	442186	hgsc.bcm.edu	37	6	29079940	29079940	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	OR2J3-90	NM_001005216	exon1	c.G273A	p.P91P	GGGCCCGGAAAAG	.	130.0	12.0	175.0	0.0	.	Atlas-SNP
CFTR	1080	hgsc.bcm.edu	37	7	117242878	117242878	+	Splice_Site	SNP	A	A	T	novel		TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	CFTR-518	NM_000492	exon16	c.2620-2A>T	.	CATTCCAGGTGGC	.	213.0	13.0	176.0	0.0	.	Atlas-SNP
SCRIB	23513	hgsc.bcm.edu	37	8	144892937	144892937	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	SCRIB-228	NM_015356	exon12	c.G1323T	p.P441P	GCTCGGCGGGGCA	.	50.0	19.0	24.0	0.0	.	Atlas-SNP
ABCA1	19	hgsc.bcm.edu	37	9	107568702	107568702	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	ABCA1-1016	NM_005502	exon31	c.C4284G	p.P1428P	CTGGCAGGGCGTG	.	113.0	37.0	120.0	0.0	.	Atlas-SNP
GLE1	2733	hgsc.bcm.edu	37	9	131303399	131303399	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	GLE1-22	NM_001003722	exon16	c.G2047T	p.D683Y	CACAAGGACATTC	.	80.0	5.0	82.0	0.0	.	Atlas-SNP
