Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Algorithm
FAM178A	55719	hgsc.bcm.edu	37	10	102676854	102676854	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	.	NM_018121	exon3	c.711delG	p.Q237fs	.	.	171.0	38.0	234.0	0.0	.	Pindel
MAML2	84441	hgsc.bcm.edu	37	11	95825407	95825407	+	Silent	SNP	C	C	T	rs61901862		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	MAML2-850	NM_032427	exon2	c.G1788A	p.Q596Q	CTGCTGCTGCTGC	.	220.0	24.0	180.0	0.0	C|0.250;T|0.750	Atlas-SNP
GLB1L2	89944	hgsc.bcm.edu	37	11	134240909	134240909	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	GLB1L2-25	NM_138342	exon13	c.A1223G	p.K408R	CAATCAAGTCTGA	.	98.0	45.0	63.0	0.0	.	Atlas-SNP
KRTAP5-5	439915	hgsc.bcm.edu	37	11	1651199	1651200	+	In_Frame_Ins	INS	-	-	GGCTGTGGCTCC	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	KRTAP5-5-23	NM_001001480	exon1	c.129_130insGGCTGTGGCTCC	p.G43delinsGGCGS	.	.	90.0	19.0	29.0	0.0	.	Atlas-Indel
DUSP6	1848	hgsc.bcm.edu	37	12	89744754	89744754	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	DUSP6-846	NM_001946	exon2	c.A449G	p.N150S	TCTAGATTGGTCT	.	45.0	24.0	33.0	0.0	.	Atlas-SNP
C12orf49	79794	hgsc.bcm.edu	37	12	117160973	117160973	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	C12orf49-91	NM_024738	exon2	c.C167T	p.P56L	GGGATGGGCTGAT	.	250.0	47.0	204.0	0.0	.	Atlas-SNP
GCN1L1	10985	hgsc.bcm.edu	37	12	120616700	120616700	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	GCN1L1-94	NM_006836	exon6	c.C480T	p.H160H	CACGGCGTGCTTG	.	75.0	28.0	67.0	0.0	.	Atlas-SNP
RB1	5925	hgsc.bcm.edu	37	13	48934194	48934194	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	RB1,NS,lymphoid_neoplasm,0	RB1-3784	NM_000321	exon7	c.C649T	p.Q217X	TCATTTCAGTTAA	.	32.0	24.0	85.0	0.0	.	Atlas-SNP
OTX2	5015	hgsc.bcm.edu	37	14	57268974	57268974	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	OTX2-205	NM_001270523	exon5	c.C349G	p.P117A	GAGCTGGAGATGT	.	56.0	22.0	42.0	0.0	.	Atlas-SNP
PLEKHG3	26030	hgsc.bcm.edu	37	14	65210339	65210339	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	PLEKHG3-91	NM_015549	exon15	c.C3410T	p.S1137F	AGGGTTCCAGGGA	.	65.0	4.0	57.0	0.0	.	Atlas-SNP
DICER1	23405	hgsc.bcm.edu	37	14	95571420	95571420	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	DICER1-961	NM_001271282	exon20	c.3258delT	p.P1086fs	.	.	140.0	64.0	115.0	0.0	.	Atlas-Indel
GP2	2813	hgsc.bcm.edu	37	16	20335574	20335574	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	GP2-94	NM_001502	exon3	c.T99C	p.Y33Y	GTTTCCATAACCT	.	208.0	82.0	149.0	0.0	.	Atlas-SNP
RBBP6	5930	hgsc.bcm.edu	37	16	24580870	24580870	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	RBBP6-230	NM_018703	exon16	c.A2757C	p.L919F	AGAGTTATTAGAG	.	78.0	35.0	60.0	0.0	.	Atlas-SNP
TOP2A	7153	hgsc.bcm.edu	37	17	38561085	38561085	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	TOP2A-655	NM_001067	exon17	c.C2004T	p.F668F	CTCCATGAAATTA	.	98.0	38.0	81.0	0.0	.	Atlas-SNP
C1QTNF1	114897	hgsc.bcm.edu	37	17	77043879	77043879	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	C1QTNF1-91	NM_198593	exon4	c.C555T	p.F185F	CAAGTTCTACTGC	.	120.0	94.0	180.0	1.0	.	Atlas-SNP
ROCK1	6093	hgsc.bcm.edu	37	18	18629131	18629131	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	ROCK1-1026	NM_005406	exon4	c.G336A	p.M112I	CTTTATCATTTCA	.	58.0	20.0	63.0	0.0	.	Atlas-SNP
EFNA2	1943	hgsc.bcm.edu	37	19	1295717	1295717	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	EFNA2-90	NM_001405	exon2	c.G314A	p.R105H	ACCACCGCCAGCG	.	95.0	6.0	10.0	0.0	.	Atlas-SNP
ZNF558	148156	hgsc.bcm.edu	37	19	8922403	8922403	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	ZNF558-90	NM_144693	exon6	c.A763G	p.K255E	TCCTCTTGTGGCT	.	151.0	65.0	135.0	0.0	.	Atlas-SNP
ITLN2	142683	hgsc.bcm.edu	37	1	160922445	160922445	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	ITLN2-91	NM_080878	exon3	c.G158T	p.C53F	TCTTTGCAGCTTC	.	111.0	41.0	78.0	0.0	.	Atlas-SNP
SLC35C2	51006	hgsc.bcm.edu	37	20	44979124	44979131	+	Frame_Shift_Del	DEL	CTGGAGCC	CTGGAGCC	-	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	CTGGAGCC	CTGGAGCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	SLC35C2-91	NM_015945	exon10	c.1001_1008del	p.334_336del	.	.	110.0	50.0	108.0	0.0	.	Pindel
MN1	4330	hgsc.bcm.edu	37	22	28194933	28194934	+	In_Frame_Ins	INS	-	-	TGCTGC	rs75719175	alternate_allele	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	MN1-993	NM_002430	exon1	c.1599_1600insGCAGCA	p.Q533delinsQQQ	.	.	107.0	40.0	13.0	0.0	.	Atlas-Indel
ADD2	119	hgsc.bcm.edu	37	2	70933534	70933534	+	Missense_Mutation	SNP	C	C	T	rs200519011		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	ADD2-93	NM_001185054	exon3	c.G7A	p.E3K	TCTCTTCGCTCAT	.	41.0	18.0	17.0	0.0	C|0.999;T|0.000	Atlas-SNP
LYG2	254773	hgsc.bcm.edu	37	2	99860495	99860495	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	LYG2-91	NM_175735	exon5	c.T487C	p.F163L	TGGGGAATTTTTT	.	90.0	48.0	92.0	0.0	.	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	37	3	41266103	41266103	+	Missense_Mutation	SNP	G	G	C	rs121913399	alternate_allele	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	CTNNB1,gallbladder,other,-1	CTNNB1-24361	NM_001098210	exon3	c.G100C	p.G34R	GACTCTGGAATCC	.	265.0	59.0	185.0	0.0	.	Atlas-SNP
ADCY5	111	hgsc.bcm.edu	37	3	123010075	123010075	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	ADCY5-94	NM_183357	exon18	c.C3212T	p.A1071V	ATGACCGCCACAC	.	566.0	334.0	379.0	0.0	.	Atlas-SNP
CRIPAK	285464	hgsc.bcm.edu	37	4	1388726	1388726	+	Missense_Mutation	SNP	T	T	C	rs199689156	byfrequency	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	CRIPAK-90	NM_175918	exon1	c.T427C	p.C143R	TGCCCATGCGGAG	.	137.0	13.0	11.0	0.0	T|0.980;C|0.020	Atlas-SNP
C1QTNF7	114905	hgsc.bcm.edu	37	4	15444216	15444216	+	Silent	SNP	C	C	T	rs140722077	byfrequency	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	C1QTNF7-90	NM_031911	exon3	c.C663T	p.F221F	GACCTTCGACGCC	.	90.0	48.0	69.0	0.0	C|0.999;T|0.001	Atlas-SNP
GK2	2712	hgsc.bcm.edu	37	4	80328985	80328985	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	GK2-94	NM_033214	exon1	c.G370A	p.E124K	GATCCTCAACAGT	.	156.0	43.0	170.0	0.0	.	Atlas-SNP
UNC5C	8633	hgsc.bcm.edu	37	4	96163681	96163681	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	UNC5C-94	NM_003728	exon7	c.G1007A	p.R336H	CTCCTGCGCCAGT	.	141.0	89.0	130.0	0.0	.	Atlas-SNP
FAT4	79633	hgsc.bcm.edu	37	4	126367514	126367514	+	Silent	SNP	C	C	T	rs147010455		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	FAT4-108	NM_024582	exon8	c.C7260T	p.S2420S	CACCAGCGCATTG	.	132.0	30.0	148.0	0.0	C|0.999;T|0.001	Atlas-SNP
TLR2	7097	hgsc.bcm.edu	37	4	154624343	154624343	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	TLR2-523	NM_003264	exon3	c.C284G	p.S95C	AAGATTCTTTTTC	.	154.0	54.0	168.0	0.0	.	Atlas-SNP
MYO10	4651	hgsc.bcm.edu	37	5	16701501	16701501	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	MYO10-3	NM_012334	exon25	c.C3003T	p.D1001D	GGCGTCGTCGTCG	.	135.0	53.0	91.0	0.0	.	Atlas-SNP
SLC1A3	6507	hgsc.bcm.edu	37	5	36671233	36671233	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	SLC1A3-90	NM_001166695	exon3	c.T422C	p.I141T	TAATCATTGTCAT	.	347.0	135.0	224.0	0.0	.	Atlas-SNP
B4GALT7	11285	hgsc.bcm.edu	37	5	177036622	177036622	+	Missense_Mutation	SNP	G	G	A	rs145082497	byfrequency	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	B4GALT7-91	NM_007255	exon6	c.G910A	p.G304R	GTGGGCGGGGCCC	.	559.0	37.0	168.0	0.0	G|0.999;A|0.001	Atlas-SNP
ZNF391	346157	hgsc.bcm.edu	37	6	27368446	27368446	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	ZNF391-69	NM_001076781	exon3	c.C297T	p.H99H	TAAACACCAAAGA	.	77.0	43.0	69.0	0.0	.	Atlas-SNP
OR2J3	442186	hgsc.bcm.edu	37	6	29079992	29079992	+	Missense_Mutation	SNP	G	G	A	rs201612570	byfrequency	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	OR2J3-90	NM_001005216	exon1	c.G325A	p.A109T	GTTCTCGCACTGG	.	412.0	22.0	250.0	0.0	G|0.988;A|0.013	Atlas-SNP
FAM46A	55603	hgsc.bcm.edu	37	6	82461742	82461742	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	FAM46A-90	NM_017633	exon2	c.C117T	p.G39G	GTCGCCGCCGCCG	.	96.0	14.0	19.0	0.0	.	Atlas-SNP
SEC63	11231	hgsc.bcm.edu	37	6	108194052	108194052	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	SEC63-227	NM_007214	exon20	c.C2099A	p.S700X	GAGTCTGATCTCA	.	153.0	78.0	174.0	0.0	.	Atlas-SNP
PEX7	5191	hgsc.bcm.edu	37	6	137193359	137193359	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	PEX7-90	NM_000288	exon8	c.G771A	p.V257V	TTCTGTGCTGGCC	.	33.0	9.0	33.0	0.0	.	Atlas-SNP
TRPA1	8989	hgsc.bcm.edu	37	8	72981348	72981348	+	Silent	SNP	G	G	T	rs146503939	alternate_allele	TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	TRPA1-230	NM_007332	exon3	c.C354A	p.L118L	TCTGCTGAGAAGA	.	90.0	40.0	79.0	0.0	G|1.000;C|0.000	Atlas-SNP
PSIP1	11168	hgsc.bcm.edu	37	9	15478495	15478495	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JS-01A-11D-A29I-10	TCGA-OR-A5JS-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	95b96221-95bf-40b5-8c9b-c79910e62b7e	959e8880-50f1-4d05-b574-fd92ffa11704	.	PSIP1-658	NM_021144	exon7	c.C609T	p.P203P	AGGACAGGGCTGT	.	186.0	12.0	301.0	0.0	.	Atlas-SNP
