Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Algorithm
SLC18A2	6571	hgsc.bcm.edu	37	10	119003690	119003690	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	SLC18A2-90	NM_003054	exon3	c.G330A	p.A110A	CAACGCGTCCGCT	.	121.0	42.0	113.0	0.0	.	Atlas-SNP
ARAP1	116985	hgsc.bcm.edu	37	11	72412758	72412758	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	ARAP1-91	NM_001040118	exon16	c.C2238T	p.H746H	GCCACTGTGGCTC	.	73.0	28.0	76.0	0.0	.	Atlas-SNP
GNS	2799	hgsc.bcm.edu	37	12	65146525	65146525	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	GNS-514	NM_002076	exon2	c.A205G	p.K69E	TGGTTTTCTTTAG	.	49.0	9.0	37.0	0.0	.	Atlas-SNP
DYRK2	8445	hgsc.bcm.edu	37	12	68051422	68051422	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	DYRK2-861	NM_003583	exon2	c.C516T	p.H172H	AGTCCACCAGCAC	.	81.0	19.0	55.0	0.0	.	Atlas-SNP
SSH1	54434	hgsc.bcm.edu	37	12	109182933	109182933	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	SSH1-94	NM_018984	exon15	c.C1981T	p.P661S	CCTCAGGAGCCCC	.	97.0	49.0	79.0	0.0	.	Atlas-SNP
ACACB	32	hgsc.bcm.edu	37	12	109616998	109616999	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	ACACB-98	NM_001093	exon9	c.1542_1543del	p.514_515del	.	.	115.0	26.0	84.0	0.0	.	Atlas-Indel
POMP	51371	hgsc.bcm.edu	37	13	29242664	29242664	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	POMP-90	NM_015932	exon4	c.C217G	p.L73V	CAGGGTCTATTTG	.	70.0	37.0	93.0	0.0	.	Atlas-SNP
CACNA1H	8912	hgsc.bcm.edu	37	16	1254107	1254107	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	CACNA1H-67	NM_021098	exon10	c.C2100A	p.C700X	GAGCTGCCCGTAC	.	131.0	64.0	71.0	0.0	.	Atlas-SNP
VASN	114990	hgsc.bcm.edu	37	16	4431679	4431679	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	VASN-68	NM_138440	exon2	c.G801A	p.Q267Q	CCTGCAGGAGCTG	.	71.0	16.0	11.0	0.0	.	Atlas-SNP
VAT1L	57687	hgsc.bcm.edu	37	16	77918647	77918647	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	VAT1L-90	NM_020927	exon7	c.A1025T	p.Y342F	GGCTCTACAACCA	.	78.0	7.0	70.0	0.0	.	Atlas-SNP
SARM1	23098	hgsc.bcm.edu	37	17	26723260	26723260	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	.	NM_015077	exon10	c.C2127A	p.G709G	TGCAGGCTCTGAC	.	41.0	18.0	61.0	0.0	.	Atlas-SNP
EMILIN2	84034	hgsc.bcm.edu	37	18	2892375	2892375	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	EMILIN2-93	NM_032048	exon4	c.G2250A	p.S750S	CAGGTCGCATTCC	.	15.0	9.0	29.0	0.0	.	Atlas-SNP
CSDE1	7812	hgsc.bcm.edu	37	1	115261240	115261241	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	CSDE1-227	NM_001242893	exon17	c.2250_2251insA	p.N750fs	.	.	82.0	35.0	95.0	0.0	.	Atlas-Indel
GEN1	348654	hgsc.bcm.edu	37	2	17942677	17942677	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	GEN1-359	NM_001130009	exon3	c.G176T	p.R59L	TTTTTCGTATCTC	.	72.0	5.0	115.0	0.0	.	Atlas-SNP
XPC	7508	hgsc.bcm.edu	37	3	14207051	14207051	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	XPC-662	NM_001145769	exon6	c.A545G	p.Y182C	TTTCGATAGAAGC	.	110.0	26.0	127.0	0.0	.	Atlas-SNP
CRIPAK	285464	hgsc.bcm.edu	37	4	1388755	1388755	+	Silent	SNP	C	C	G	rs141481663	byfrequency	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	CRIPAK-90	NM_175918	exon1	c.C456G	p.P152P	CGTGCCCATGCGG	.	117.0	47.0	13.0	0.0	C|0.960;G|0.040	Atlas-SNP
MTHFD2L	441024	hgsc.bcm.edu	37	4	75065574	75065574	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	MTHFD2L-91	NM_001144978	exon4	c.A515G	p.H172R	GATTTCATATTAT	.	93.0	34.0	59.0	0.0	.	Atlas-SNP
WDFY3	23001	hgsc.bcm.edu	37	4	85594085	85594085	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	WDFY3-93	NM_014991	exon68	c.G10517A	p.C3506Y	TTCTGACAAACAC	.	99.0	51.0	66.0	0.0	.	Atlas-SNP
CLPTM1L	81037	hgsc.bcm.edu	37	5	1334422	1334422	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	CLPTM1L-153	NM_030782	exon7	c.C873G	p.F291L	GACAAAGAAGGTC	.	62.0	14.0	60.0	0.0	.	Atlas-SNP
PSD2	84249	hgsc.bcm.edu	37	5	139197105	139197105	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	PSD2-91	NM_032289	exon5	c.T1056C	p.S352S	CCTCAGTTTCTTC	.	140.0	33.0	66.0	0.0	.	Atlas-SNP
PCDHB4	56131	hgsc.bcm.edu	37	5	140503194	140503194	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	PCDHB4-93	NM_018938	exon1	c.G1614A	p.P538P	TTCTCCGGCTTTG	.	664.0	59.0	173.0	0.0	.	Atlas-SNP
SLC6A7	6534	hgsc.bcm.edu	37	5	149589012	149589012	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	SLC6A7-90	NM_014228	exon14	c.C1745T	p.S582L	GACCATCGCTGGA	.	462.0	209.0	293.0	1.0	.	Atlas-SNP
STC2	8614	hgsc.bcm.edu	37	5	172745041	172745041	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	STC2-93	NM_003714	exon4	c.G718A	p.G240R	CTTCCCCGTGGTG	.	102.0	20.0	66.0	0.0	.	Atlas-SNP
TBC1D9B	23061	hgsc.bcm.edu	37	5	179290951	179290951	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	TBC1D9B-154	NM_198868	exon22	c.G3250A	p.D1084N	GCTCGTCCTCCTC	.	101.0	26.0	62.0	0.0	.	Atlas-SNP
GCM1	8521	hgsc.bcm.edu	37	6	52999074	52999074	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	GCM1-90	NM_003643	exon3	c.A124C	p.K42Q	TGTGTTTGGCATA	.	151.0	131.0	192.0	1.0	.	Atlas-SNP
OGFRL1	79627	hgsc.bcm.edu	37	6	72006483	72006483	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	OGFRL1-68	NM_024576	exon6	c.G655T	p.A219S	GCTCGGGCTGTTA	.	42.0	4.0	52.0	0.0	.	Atlas-SNP
VIP	7432	hgsc.bcm.edu	37	6	153077288	153077288	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	VIP-90	NM_003381	exon5	c.C355T	p.P119S	GAAGACCCTGTAC	.	49.0	14.0	66.0	0.0	.	Atlas-SNP
CSPP1	79848	hgsc.bcm.edu	37	8	68084742	68084742	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	CSPP1-138	NM_024790	exon23	c.G2905T	p.A969S	TTAGACGCTGCCA	.	80.0	6.0	45.0	0.0	.	Atlas-SNP
TMEM74	157753	hgsc.bcm.edu	37	8	109796609	109796609	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	TMEM74,NS,carcinoma,+1	TMEM74-228	NM_153015	exon2	c.C719T	p.T240M	CCCAGCGTGAGGA	.	114.0	31.0	103.0	0.0	.	Atlas-SNP
EPPK1	83481	hgsc.bcm.edu	37	8	144940732	144940732	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	EPPK1-25	NM_031308	exon1	c.G6690A	p.L2230L	GGGCACCAGGACG	.	88.0	5.0	36.0	0.0	.	Atlas-SNP
PNPLA7	375775	hgsc.bcm.edu	37	9	140356481	140356481	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	PNPLA7-91	NM_152286	exon31	c.C3583A	p.Q1195K	CGTGCTGGTAGCC	.	41.0	4.0	27.0	0.0	.	Atlas-SNP
