Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Algorithm
MGEA5	10724	hgsc.bcm.edu	37	10	103558728	103558728	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	MGEA5-93	NM_012215	exon9	c.A1680C	p.L560F	AGCAAGTAACTGC	.	95.0	6.0	109.0	0.0	.	Atlas-SNP
SORCS1	114815	hgsc.bcm.edu	37	10	108434909	108434909	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	SORCS1-153	NM_001206572	exon14	c.G1838A	p.S613N	TCAAAACTCAACC	.	62.0	5.0	53.0	0.0	.	Atlas-SNP
AFAP1L2	84632	hgsc.bcm.edu	37	10	116057115	116057115	+	Missense_Mutation	SNP	C	C	T	rs145837129		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	AFAP1L2-136	NM_001001936	exon17	c.G2171A	p.R724Q	TCGCCCCGGCACT	.	69.0	7.0	64.0	0.0	C|1.000;T|0.000	Atlas-SNP
RAD9A	5883	hgsc.bcm.edu	37	11	67161249	67161249	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	RAD9A-227	NM_004584	exon5	c.G437A	p.R146H	TGCTCCGCGCCCC	.	122.0	9.0	78.0	0.0	.	Atlas-SNP
ZFP36L1	677	hgsc.bcm.edu	37	14	69256542	69256542	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	ZFP36L1-91	NM_001244698	exon2	c.C725G	p.T242S	GGCAGGGTAGGTG	.	72.0	11.0	63.0	0.0	.	Atlas-SNP
ADAMTS7	11173	hgsc.bcm.edu	37	15	79092715	79092715	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	ADAMTS7-226	NM_014272	exon2	c.G275A	p.R92H	TTGAAGCGCAGCT	.	97.0	10.0	16.0	0.0	.	Atlas-SNP
APOBR	55911	hgsc.bcm.edu	37	16	28507412	28507412	+	Silent	SNP	A	A	C	rs62034315		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	APOBR-90	NM_018690	exon2	c.A1050C	p.G350G	CTCAGGAGGGGAG	.	25.0	6.0	17.0	0.0	A|0.500;C|0.500	Atlas-SNP
ABCA7	10347	hgsc.bcm.edu	37	19	1062277	1062277	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	ABCA7-98	NM_019112	exon42	c.C5677T	p.R1893C	CTTGCGCGCCTGC	.	92.0	7.0	17.0	0.0	.	Atlas-SNP
HSPG2	3339	hgsc.bcm.edu	37	1	22191512	22191512	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	HSPG2-141	NM_005529	exon36	c.G4450T	p.A1484S	CCAGTGCCATCAG	.	94.0	7.0	26.0	0.0	.	Atlas-SNP
MEAF6	64769	hgsc.bcm.edu	37	1	37979141	37979141	+	Splice_Site	SNP	T	T	C	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	MEAF6-90	NM_022756	exon3	c.91-2A>G	.	GTTTCCTGAGAGA	.	129.0	24.0	144.0	0.0	.	Atlas-SNP
KCNT2	343450	hgsc.bcm.edu	37	1	196300332	196300332	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	KCNT2-159	NM_198503	exon18	c.A2057G	p.H686R	AGGAGATGACAAA	.	318.0	27.0	253.0	0.0	.	Atlas-SNP
RBPJL	11317	hgsc.bcm.edu	37	20	43943206	43943206	+	Splice_Site	SNP	G	G	C	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	RBPJL-227	NM_014276	exon9	c.1020+1G>C	.	TTTCAGGTAAGAA	.	118.0	10.0	106.0	0.0	.	Atlas-SNP
SEPT5	5413	hgsc.bcm.edu	37	22	19706333	19706333	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	SEPT5-636	NM_001009939	exon1	c.C73A	p.R25R	CAGAGGCGGCTCA	.	48.0	9.0	10.0	0.0	.	Atlas-SNP
APOB	338	hgsc.bcm.edu	37	2	21233524	21233524	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	APOB-175	NM_000384	exon26	c.A6216T	p.P2072P	AAAAAATGGGAGG	.	79.0	7.0	84.0	0.0	.	Atlas-SNP
THNSL2	55258	hgsc.bcm.edu	37	2	88485425	88485425	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	THNSL2,NS,carcinoma,+1	THNSL2-91	NM_018271	exon8	c.G1238T	p.R413L	CTCCCCGGTGCTG	.	187.0	15.0	158.0	0.0	.	Atlas-SNP
KIAA1715	80856	hgsc.bcm.edu	37	2	176856974	176856974	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	KIAA1715-93	NM_030650	exon4	c.T242G	p.F81C	AAAGCAAAAAATG	.	228.0	55.0	218.0	0.0	.	Atlas-SNP
NLGN1	22871	hgsc.bcm.edu	37	3	173322702	173322702	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	NLGN1-231	NM_014932	exon3	c.C314A	p.S105X	CCTGGTCAGATAT	.	135.0	16.0	102.0	0.0	.	Atlas-SNP
CRIPAK	285464	hgsc.bcm.edu	37	4	1388755	1388755	+	Silent	SNP	C	C	G	rs141481663	byfrequency	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	CRIPAK-90	NM_175918	exon1	c.C456G	p.P152P	CGTGCCCATGCGG	.	81.0	10.0	6.0	0.0	C|0.960;G|0.040	Atlas-SNP
CRIPAK	285464	hgsc.bcm.edu	37	4	1388974	1388974	+	Silent	SNP	T	T	C	rs71614969	bycluster	TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	CRIPAK-90	NM_175918	exon1	c.T675C	p.D225D	TGCCGATGCGGAG	.	89.0	11.0	18.0	0.0	C|1.000;|0.000	Atlas-SNP
LPA	4018	hgsc.bcm.edu	37	6	161015130	161015130	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	LPA-74	NM_005577	exon23	c.C3489T	p.P1163P	GACCCCGGGGCTT	.	123.0	18.0	118.0	0.0	.	Atlas-SNP
THSD7A	221981	hgsc.bcm.edu	37	7	11441492	11441492	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	THSD7A-71	NM_015204	exon22	c.G4341A	p.P1447P	AATCACCGGTCTG	.	56.0	5.0	73.0	0.0	.	Atlas-SNP
UBN2	254048	hgsc.bcm.edu	37	7	138958801	138958801	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	UBN2-70	NM_173569	exon11	c.A1954G	p.K652E	TGGCCTAAGGGCT	.	76.0	10.0	71.0	0.0	.	Atlas-SNP
SP8	221833	hgsc.bcm.edu	37	7	20824941	20824943	+	In_Frame_Del	DEL	GCC	GCC	-	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	GCC	GCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	SP8-91	NM_182700	exon2	c.494_496del	p.165_166del	.	.	45.0	11.0	15.0	0.0	.	Atlas-Indel
CDX4	1046	hgsc.bcm.edu	37	X	72674420	72674420	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JU-01A-11D-A30A-10	TCGA-OR-A5JU-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ca1350d1-6cf5-4b12-b2e1-7803715d9dc3	b3d1897e-c0ea-45ca-ba90-63b270057779	.	CDX4-130	NM_005193	exon3	c.G854T	p.X285L	CCGAATGAAAGAA	.	95.0	10.0	110.0	0.0	.	Atlas-SNP
