Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Algorithm
MUC5B	727897	hgsc.bcm.edu	37	11	1253980	1253980	+	Missense_Mutation	SNP	A	A	G	rs202127660		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	.	NM_002458	exon17	c.A2045G	p.D682G	TCAGCGACTGGAG	.	67.0	11.0	42.0	0.0	.	Atlas-SNP
SLCO1A2	6579	hgsc.bcm.edu	37	12	21445134	21445134	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	SLCO1A2-157	NM_134431	exon13	c.C1574A	p.S525Y	GCCAAAGAATAAA	.	51.0	16.0	42.0	0.0	.	Atlas-SNP
HNRNPA1	3178	hgsc.bcm.edu	37	12	54676958	54676958	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	HNRNPA1-93	NM_031157	exon8	c.G847A	p.G283R	TATGGCGGGAGTG	.	97.0	36.0	73.0	0.0	.	Atlas-SNP
HAGH	3029	hgsc.bcm.edu	37	16	1872357	1872357	+	Missense_Mutation	SNP	G	G	T	rs115850237	alternate_allele	TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	HAGH-91	NM_001040427	exon4	c.C114A	p.D38E	CGCCGCGTCCACG	.	38.0	10.0	38.0	0.0	G|1.000;A|0.000	Atlas-SNP
DNAH3	55567	hgsc.bcm.edu	37	16	21042562	21042562	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	DNAH3-167	NM_017539	exon37	c.C5244G	p.P1748P	AGCCTTGGGGTTG	.	112.0	20.0	99.0	0.0	.	Atlas-SNP
FHOD1	29109	hgsc.bcm.edu	37	16	67268118	67268118	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	FHOD1-221	NM_013241	exon13	c.C1488G	p.P496P	GCTCTGGGGTGTT	.	15.0	8.0	11.0	0.0	.	Atlas-SNP
MINK1	50488	hgsc.bcm.edu	37	17	4799079	4799079	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	MINK1-943	NM_001024937	exon27	c.G3256T	p.G1086C	AAGCAGGGCTGGA	.	70.0	5.0	69.0	0.0	.	Atlas-SNP
CD300LG	146894	hgsc.bcm.edu	37	17	41930365	41930365	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	CD300LG-90	NM_001168322	exon3	c.C465T	p.T155T	GCAAACCCAGCCC	.	79.0	15.0	100.0	0.0	.	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	37	19	9068139	9068139	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	MUC16_ENST00000331986,NS,carcinoma,0	MUC16-566	NM_024690	exon3	c.G19307T	p.G6436V	GTCAGGCCAGCAA	.	225.0	59.0	199.0	1.0	.	Atlas-SNP
PRKCSH	5589	hgsc.bcm.edu	37	19	11558367	11558367	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	PRKCSH-90	NM_002743	exon11	c.G963A	p.E321E	GGAGGAGGAGGAA	.	86.0	7.0	45.0	0.0	.	Atlas-SNP
ZNF493	284443	hgsc.bcm.edu	37	19	21607539	21607539	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	ZNF493-516	NM_175910	exon2	c.C1694T	p.T565I	GCAAAACTTTCTA	.	71.0	7.0	64.0	0.0	.	Atlas-SNP
ARHGAP33	115703	hgsc.bcm.edu	37	19	36275213	36275213	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	ARHGAP33-229	NM_052948	exon16	c.C1561A	p.P521T	CTCGACCCTGCAG	.	88.0	9.0	67.0	0.0	.	Atlas-SNP
ZP4	57829	hgsc.bcm.edu	37	1	238048868	238048868	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	ZP4-93	NM_021186	exon8	c.G983A	p.G328D	TAAGAGCCATAGT	.	161.0	27.0	160.0	0.0	.	Atlas-SNP
KIF16B	55614	hgsc.bcm.edu	37	20	16253901	16253901	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	KIF16B-291	NM_024704	exon26	c.G3951A	p.G1317G	GCTCTACCCCGTC	.	123.0	34.0	79.0	0.0	.	Atlas-SNP
APCDD1L	164284	hgsc.bcm.edu	37	20	57036492	57036492	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	APCDD1L-227	NM_153360	exon4	c.C860T	p.S287L	CACCCCGAGCTGA	.	170.0	23.0	38.0	0.0	.	Atlas-SNP
DIDO1	11083	hgsc.bcm.edu	37	20	61537287	61537287	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	DIDO1-96	NM_022105	exon6	c.G1540C	p.V514L	GCTTTACTGCATT	.	87.0	27.0	66.0	0.0	.	Atlas-SNP
ROBO2	6092	hgsc.bcm.edu	37	3	77526667	77526667	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	ROBO2-328	NM_002942	exon3	c.C491G	p.T164S	AACCCACCATCTA	.	189.0	25.0	207.0	0.0	.	Atlas-SNP
SPICE1	152185	hgsc.bcm.edu	37	3	113187717	113187717	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	SPICE1-70	NM_144718	exon9	c.A781G	p.R261G	GGAGTCTCTTGAC	.	103.0	21.0	73.0	0.0	.	Atlas-SNP
HCLS1	3059	hgsc.bcm.edu	37	3	121351315	121351315	+	Silent	SNP	G	G	A	rs80289672	byfrequency	TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	HCLS1-90	NM_005335	exon12	c.C1104T	p.P368P	AGGCTCGGGCTCA	.	42.0	7.0	36.0	0.0	G|0.936;A|0.064	Atlas-SNP
SI	6476	hgsc.bcm.edu	37	3	164709159	164709159	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	SI-104	NM_001041	exon44	c.C5090G	p.A1697G	TTTTGAGCTGGCT	.	127.0	28.0	150.0	0.0	.	Atlas-SNP
KLHL6	89857	hgsc.bcm.edu	37	3	183225850	183225850	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	KLHL6-93	NM_130446	exon3	c.T906A	p.N302K	CACCTCATTGCCA	.	130.0	21.0	109.0	0.0	.	Atlas-SNP
SORCS2	57537	hgsc.bcm.edu	37	4	7725585	7725585	+	Silent	SNP	G	G	A	rs2285779		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	SORCS2-91	NM_020777	exon19	c.G2586A	p.E862E	CGATGAGGCGGTG	.	58.0	12.0	53.0	0.0	T|0.002;C|0.998	Atlas-SNP
TECRL	253017	hgsc.bcm.edu	37	4	65145874	65145874	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	TECRL-90	NM_001010874	exon12	c.G1008T	p.W336C	TTGTGCCCACAAA	.	46.0	11.0	43.0	0.0	.	Atlas-SNP
SLC4A4	8671	hgsc.bcm.edu	37	4	72319242	72319242	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	SLC4A4-95	NM_001134742	exon12	c.G1353T	p.K451N	CATAAAGAGGAAA	.	59.0	24.0	57.0	0.0	.	Atlas-SNP
FHDC1	85462	hgsc.bcm.edu	37	4	153889150	153889150	+	Silent	SNP	G	G	A	rs146044034		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	FHDC1-136	NM_033393	exon9	c.G1119A	p.T373T	GAACACGGAGGCA	.	97.0	24.0	68.0	0.0	G|1.000;A|0.000	Atlas-SNP
SPINK5	11005	hgsc.bcm.edu	37	5	147480929	147480929	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	SPINK5-138	NM_001127699	exon14	c.A1232G	p.E411G	CAGAAGAAGAAGA	.	233.0	35.0	164.0	0.0	.	Atlas-SNP
PKHD1	5314	hgsc.bcm.edu	37	6	51695775	51695775	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	PKHD1-603	NM_170724	exon52	c.C8186G	p.A2729G	TCAGGGGCAGAGG	.	38.0	25.0	47.0	0.0	.	Atlas-SNP
GRID2IP	392862	hgsc.bcm.edu	37	7	6590955	6590955	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	.	NM_001145118	exon1	c.C113T	p.A38V	GCATGCGCGCTGC	.	64.0	24.0	12.0	0.0	.	Atlas-SNP
BBS9	27241	hgsc.bcm.edu	37	7	33388714	33388714	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	BBS9-230	NM_001033605	exon13	c.C1364A	p.A455D	AAAAAGCCAAATT	.	109.0	21.0	94.0	0.0	.	Atlas-SNP
