Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Algorithm
ALOX5	240	hgsc.bcm.edu	37	10	45938628	45938628	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	ALOX5-228	NM_001256154	exon10	c.G1415T	p.R472L	TCTACCGGGACGA	.	299.0	126.0	140.0	0.0	.	Atlas-SNP
PCGF5	84333	hgsc.bcm.edu	37	10	93024204	93024204	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	PCGF5-226	NM_032373	exon8	c.A590G	p.N197S	TGTGCAATGGTGA	.	99.0	40.0	60.0	0.0	.	Atlas-SNP
MUC5B	727897	hgsc.bcm.edu	37	11	1253976	1253976	+	Missense_Mutation	SNP	A	A	G	rs76956995		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	.	NM_002458	exon17	c.A2041G	p.S681G	CAGCTCAGCGACT	.	126.0	12.0	26.0	0.0	.	Atlas-SNP
MUC5B	727897	hgsc.bcm.edu	37	11	1253980	1253980	+	Missense_Mutation	SNP	A	A	G	rs202127660		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	.	NM_002458	exon17	c.A2045G	p.D682G	TCAGCGACTGGAG	.	121.0	8.0	23.0	0.0	.	Atlas-SNP
MMP8	4317	hgsc.bcm.edu	37	11	102595542	102595542	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	MMP8-229	NM_002424	exon1	c.G45T	p.V15V	AATCTGCACATGG	.	99.0	16.0	166.0	0.0	.	Atlas-SNP
GRIN2B	2904	hgsc.bcm.edu	37	12	13716624	13716624	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	GRIN2B-231	NM_000834	exon13	c.C3548T	p.T1183M	TCGCCCGTCCCGT	.	107.0	47.0	76.0	0.0	.	Atlas-SNP
LRRC43	254050	hgsc.bcm.edu	37	12	122684857	122684857	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	LRRC43-135	NM_001098519	exon8	c.G1471A	p.V491M	ACCACCGTGACCA	.	193.0	62.0	86.0	0.0	.	Atlas-SNP
COG3	83548	hgsc.bcm.edu	37	13	46050394	46050394	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	COG3-154	NM_031431	exon2	c.C233T	p.S78L	TGACTTCAGTAGT	.	43.0	28.0	77.0	0.0	.	Atlas-SNP
DGKH	160851	hgsc.bcm.edu	37	13	42761266	42761289	+	Frame_Shift_Del	DEL	TGATGCCGTGGCCAGTAAAGTAAG	TGATGCCGTGGCCAGTAAAGTAAG	-	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	TGATGCCGTGGCCAGTAAAGTAAG	TGATGCCGTGGCCAGTAAAGTAAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	DGKH-652	NM_152910	exon14	c.1619_1638del	p.540_546del	.	.	33.0	17.0	133.0	0.0	.	Pindel
C15orf55	256646	hgsc.bcm.edu	37	15	34648579	34648579	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	C15orf55-206	NM_175741	exon7	c.G2286T	p.L762L	GGGACTGGGCTCC	.	151.0	65.0	104.0	0.0	.	Atlas-SNP
CHRNA3	1136	hgsc.bcm.edu	37	15	78894294	78894294	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	CHRNA3-515	NM_000743	exon5	c.C690A	p.D230E	TGTGATGTCGGGG	.	267.0	93.0	194.0	0.0	.	Atlas-SNP
C16orf89	146556	hgsc.bcm.edu	37	16	5115841	5115841	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	C16orf89-92	NM_001098514	exon1	c.G69A	p.L23L	CCCAGGCAGTGAG	.	250.0	100.0	135.0	0.0	.	Atlas-SNP
DNAH3	55567	hgsc.bcm.edu	37	16	21061229	21061229	+	Splice_Site	SNP	A	A	T	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	DNAH3-167	NM_017539	exon31	c.4347+2T>A	.	TTGCTTACCTGCT	.	95.0	39.0	36.0	0.0	.	Atlas-SNP
FBRS	64319	hgsc.bcm.edu	37	16	30677859	30677859	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	FBRS-23	NM_001105079	exon6	c.G240C	p.L80F	ACCTTTGAGGGTG	.	173.0	57.0	89.0	0.0	.	Atlas-SNP
RNF157	114804	hgsc.bcm.edu	37	17	74154491	74154491	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	RNF157-228	NM_052916	exon13	c.G1396A	p.V466I	GCTGAACCGACGG	.	62.0	5.0	66.0	0.0	.	Atlas-SNP
NF1	4763	hgsc.bcm.edu	37	17	29654828	29654829	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	NF1-3353	NM_001042492	exon38	c.5580_5581insA	p.L1860fs	.	.	55.0	27.0	97.0	0.0	.	Pindel
OR7E24	26648	hgsc.bcm.edu	37	19	9362064	9362064	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	OR7E24-47	NM_001079935	exon1	c.C345A	p.C115X	AGGCTGCCTGACT	.	76.0	34.0	32.0	0.0	.	Atlas-SNP
SLC5A5	6528	hgsc.bcm.edu	37	19	17983255	17983255	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	SLC5A5-93	NM_000453	exon1	c.A127G	p.S43G	CAGCGCAGCGCTG	.	31.0	12.0	11.0	0.0	.	Atlas-SNP
CEP89	84902	hgsc.bcm.edu	37	19	33444556	33444556	+	Missense_Mutation	SNP	T	T	C	rs73579706	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	CEP89-94	NM_032816	exon4	c.A457G	p.S153G	CATCACTGTGGCC	.	100.0	8.0	73.0	0.0	T|0.500;C|0.500	Atlas-SNP
MEGF8	1954	hgsc.bcm.edu	37	19	42855429	42855429	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	MEGF8-23	NM_001271938	exon16	c.G2798A	p.R933Q	GCCGGCGGGGCCG	.	112.0	52.0	30.0	0.0	.	Atlas-SNP
NEFH	4744	hgsc.bcm.edu	37	22	29885581	29885604	+	In_Frame_Del	DEL	AGGCCAAGTCCCCAGAGAAGGAAG	AGGCCAAGTCCCCAGAGAAGGAAG	-	rs200984527		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	AGGCCAAGTCCCCAGAGAAGGAAG	AGGCCAAGTCCCCAGAGAAGGAAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	NEFH-90	NM_021076	exon4	c.1951_1974del	p.651_658del	.	.	175.0	80.0	197.0	0.0	.	Atlas-Indel
TMEM247	388946	hgsc.bcm.edu	37	2	46707808	46707808	+	Missense_Mutation	SNP	C	C	G	rs74318890		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	.	NM_001145051	exon2	c.C382G	p.Q128E	CAGCGGCAGCGGC	.	282.0	35.0	176.0	0.0	G|1.000;|0.000	Atlas-SNP
ACVR2B	93	hgsc.bcm.edu	37	3	38519421	38519421	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	ACVR2B-942	NM_001106	exon3	c.C330T	p.N110N	CTGCAACGAACGC	.	215.0	175.0	225.0	0.0	.	Atlas-SNP
OR5H2	79310	hgsc.bcm.edu	37	3	98001912	98001912	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	OR5H2-71	NM_001005482	exon1	c.C181A	p.H61N	CAACTTCACATCC	.	162.0	120.0	181.0	0.0	.	Atlas-SNP
KIAA1211	57482	hgsc.bcm.edu	37	4	57181586	57181586	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	KIAA1211-70	NM_020722	exon8	c.C1918T	p.R640X	CCTCCCCGAGGCC	.	80.0	42.0	12.0	0.0	.	Atlas-SNP
NPC1L1	29881	hgsc.bcm.edu	37	7	44560705	44560705	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	NPC1L1-94	NM_013389	exon13	c.G2966C	p.C989S	TTTAGGCAGTTCA	.	121.0	51.0	71.0	0.0	.	Atlas-SNP
C7orf72	100130988	hgsc.bcm.edu	37	7	50136067	50136067	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	C7orf72-23	NM_001161834	exon1	c.C386T	p.T129I	TACCAACCCTAGT	.	195.0	98.0	117.0	0.0	.	Atlas-SNP
AKAP9	10142	hgsc.bcm.edu	37	7	91646396	91646396	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	AKAP9-755	NM_147185	exon12	c.C3817A	p.L1273I	TTGGTACTTCAAA	.	237.0	78.0	155.0	0.0	.	Atlas-SNP
SP8	221833	hgsc.bcm.edu	37	7	20824941	20824943	+	In_Frame_Del	DEL	GCC	GCC	-	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	GCC	GCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	SP8-91	NM_182700	exon2	c.494_496del	p.165_166del	.	.	37.0	12.0	7.0	0.0	.	Atlas-Indel
DBC1	1620	hgsc.bcm.edu	37	9	121929775	121929775	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	DBC1-582	NM_014618	exon8	c.C1873A	p.L625I	TAGGTAGCCGAGT	.	347.0	294.0	257.0	1.0	.	Atlas-SNP
PCDH11X	27328	hgsc.bcm.edu	37	X	91132451	91132451	+	Silent	SNP	C	C	A	rs2563383	alternate_allele	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	PCDH11X-193	NM_032968	exon2	c.C1212A	p.I404I	TGAAATCCCTTTC	.	272.0	242.0	243.0	2.0	T|1.000;|0.000	Atlas-SNP
