Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Algorithm
OPTN	10133	hgsc.bcm.edu	37	10	13154589	13154589	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	OPTN-70	NM_021980	exon4	c.A506G	p.N169S	AGCTGAACTCCAG	.	104.0	91.0	109.0	0.0	.	Atlas-SNP
TSPAN31	6302	hgsc.bcm.edu	37	12	58140369	58140372	+	Splice_Site	DEL	CAGA	CAGA	-	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	CAGA	CAGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	TSPAN31-446	.	.	.	.	.	.	262.0	63.0	126.0	0.0	.	Pindel
SAP18	10284	hgsc.bcm.edu	37	13	21715115	21715115	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	SAP18-226	NM_005870	exon2	c.G220A	p.E74K	TCCAGCGAGTTGC	.	102.0	92.0	77.0	0.0	.	Atlas-SNP
ADAMTS7	11173	hgsc.bcm.edu	37	15	79051846	79051846	+	Missense_Mutation	SNP	T	T	C	rs199524707		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	ADAMTS7-226	NM_014272	exon24	c.A4978G	p.I1660V	TGCGGATGGTGGG	.	70.0	11.0	32.0	0.0	.	Atlas-SNP
POLG	5428	hgsc.bcm.edu	37	15	89876827	89876828	+	In_Frame_Ins	INS	-	-	TGCTGC	rs41550117	bycluster;alternate_allele	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	POLG-228	NM_001126131	exon2	c.159_160insGCAGCA	p.Q53delinsQQQ	.	.	42.0	13.0	10.0	0.0	.	Atlas-Indel
SLC5A5	6528	hgsc.bcm.edu	37	19	17985536	17985536	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	SLC5A5-93	NM_000453	exon4	c.C539T	p.A180V	ACACGGCTGTGGT	.	85.0	72.0	91.0	0.0	.	Atlas-SNP
HRC	3270	hgsc.bcm.edu	37	19	49657916	49657916	+	Silent	SNP	T	T	C	rs7409255		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	HRC-91	NM_002152	exon1	c.A579G	p.E193E	CTCCTCTTCTCCT	.	59.0	10.0	57.0	0.0	.	Atlas-SNP
FPR1	2357	hgsc.bcm.edu	37	19	52249666	52249666	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	FPR1-524	NM_001193306	exon3	c.C582T	p.A194A	GGCAACGGCCACA	.	127.0	115.0	116.0	1.0	.	Atlas-SNP
FBXO42	54455	hgsc.bcm.edu	37	1	16577408	16577408	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	FBXO42-228	NM_018994	exon10	c.G1911A	p.Q637Q	CATACTCTGGTAT	.	163.0	92.0	148.0	0.0	.	Atlas-SNP
OR2T10	127069	hgsc.bcm.edu	37	1	248756893	248756893	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	OR2T10-69	NM_001004693	exon1	c.G177A	p.M59I	GAAGTACATGGGA	.	208.0	14.0	240.0	0.0	.	Atlas-SNP
SNRPB2	6629	hgsc.bcm.edu	37	20	16712857	16712857	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	SNRPB2-153	NM_003092	exon3	c.T113C	p.V38A	ATGTGGTGGACAT	.	245.0	105.0	159.0	0.0	.	Atlas-SNP
ADNP	23394	hgsc.bcm.edu	37	20	49510967	49510967	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	ADNP-92	NM_015339	exon5	c.A284G	p.N95S	TGGACATTGCGGA	.	176.0	80.0	102.0	0.0	.	Atlas-SNP
SGOL2	151246	hgsc.bcm.edu	37	2	201437310	201437310	+	Silent	SNP	G	G	T	rs202134341	alternate_allele	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	SGOL2-94	NM_001160046	exon7	c.G2241T	p.T747T	TTTAACGCAAAAA	.	63.0	5.0	122.0	0.0	G|0.999;A|0.000	Atlas-SNP
IGSF10	285313	hgsc.bcm.edu	37	3	151161115	151161115	+	Missense_Mutation	SNP	C	C	T	rs145507750		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	IGSF10-102	NM_178822	exon5	c.G5620A	p.V1874I	AGTAAACGCTGGG	.	69.0	57.0	63.0	0.0	C|0.999;T|0.001	Atlas-SNP
FRAS1	80144	hgsc.bcm.edu	37	4	79351450	79351450	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	FRAS1-68	NM_025074	exon37	c.T4848C	p.L1616L	AGGACTTCAGGTG	.	71.0	58.0	87.0	0.0	.	Atlas-SNP
ENPP5	59084	hgsc.bcm.edu	37	6	46129455	46129455	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	ENPP5-90	NM_021572	exon4	c.A1042T	p.M348L	GATGCATATCTGC	.	24.0	22.0	38.0	0.0	.	Atlas-SNP
HECW1	23072	hgsc.bcm.edu	37	7	43483926	43483943	+	In_Frame_Del	DEL	AGAGTCCTCTGAGAGCTG	AGAGTCCTCTGAGAGCTG	-	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	AGAGTCCTCTGAGAGCTG	AGAGTCCTCTGAGAGCTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	HECW1-669	NM_015052	exon11	c.1154_1171del	p.385_391del	.	.	66.0	55.0	147.0	0.0	.	Atlas-Indel
DLC1	10395	hgsc.bcm.edu	37	8	12957772	12957772	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	DLC1-657	NM_182643	exon9	c.T2074C	p.L692L	TGATCAACCCCAG	.	179.0	81.0	70.0	0.0	.	Atlas-SNP
COL22A1	169044	hgsc.bcm.edu	37	8	139729081	139729081	+	Missense_Mutation	SNP	C	C	T	rs144653941		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	COL22A1-103	NM_152888	exon28	c.G2387A	p.R796Q	CCAGGTCGGCCTG	.	76.0	31.0	55.0	0.0	C|1.000;T|0.000	Atlas-SNP
SAGE1	55511	hgsc.bcm.edu	37	X	134993856	134993856	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	.	SAGE1-133	NM_018666	exon18	c.G2265A	p.M755I	TTGTATGCCACCC	.	197.0	177.0	141.0	0.0	.	Atlas-SNP
