Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Algorithm
KIF20B	9585	hgsc.bcm.edu	37	10	91518639	91518642	+	Frame_Shift_Del	DEL	AGTC	AGTC	-	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	AGTC	AGTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	KIF20B-93	NM_016195	exon27	c.4559_4560del	p.1520_1520del	.	.	110.0	47.0	124.0	0.0	.	Atlas-Indel
FBXW4	6468	hgsc.bcm.edu	37	10	103371096	103371097	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	FBXW4-226	NM_022039	exon9	c.1191_1192del	p.397_398del	.	.	277.0	133.0	198.0	0.0	.	Atlas-Indel
NUDT22	84304	hgsc.bcm.edu	37	11	63994397	63994397	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	NUDT22-90	NM_001128613	exon2	c.G273A	p.L91L	CTTCCTGGGCACC	.	79.0	46.0	62.0	0.0	.	Atlas-SNP
LTBP3	4054	hgsc.bcm.edu	37	11	65314984	65314984	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	LTBP3-91	NM_021070	exon14	c.A2033T	p.N678I	GGAAAGTTGATGC	.	107.0	47.0	95.0	0.0	.	Atlas-SNP
DSCAML1	57453	hgsc.bcm.edu	37	11	117335893	117335893	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	DSCAML1-159	NM_020693	exon17	c.C3210A	p.P1070P	CTTCTTGGGTGCC	.	65.0	4.0	77.0	0.0	.	Atlas-SNP
TECTA	7007	hgsc.bcm.edu	37	11	121028854	121028854	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	TECTA-225	NM_005422	exon13	c.C4610T	p.P1537L	CGGCCCCCAACCT	.	75.0	65.0	112.0	0.0	.	Atlas-SNP
BIN2	51411	hgsc.bcm.edu	37	12	51685869	51685869	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	BIN2-91	NM_016293	exon10	c.A1021T	p.N341Y	GGCCATTGCAGGC	.	76.0	38.0	69.0	0.0	.	Atlas-SNP
SUOX	6821	hgsc.bcm.edu	37	12	56398081	56398081	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	SUOX-90	NM_000456	exon6	c.C908A	p.A303D	TGTTAGCCCAGGC	.	106.0	45.0	86.0	0.0	.	Atlas-SNP
HECTD4	283450	hgsc.bcm.edu	37	12	112690349	112690349	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	.	NM_001109662	exon23	c.3030delT	p.P1010fs	.	.	33.0	14.0	24.0	0.0	.	Atlas-Indel
EP400	57634	hgsc.bcm.edu	37	12	132547093	132547094	+	In_Frame_Ins	INS	-	-	CAGCAGCAG	rs10902490	bycluster;by2hit2allele;byhapmap	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	EP400-520	NM_015409	exon47	c.8181_8182insCAGCAGCAG	p.Q2727delinsQQQQ	.	.	290.0	101.0	161.0	0.0	.	Atlas-Indel
IPO5	3843	hgsc.bcm.edu	37	13	98658494	98658494	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	IPO5-228	NM_002271	exon17	c.A1662G	p.P554P	TATGCCATCACTG	.	87.0	41.0	77.0	0.0	.	Atlas-SNP
MYCBP2	23077	hgsc.bcm.edu	37	13	77745686	77745689	+	Frame_Shift_Del	DEL	ACAG	ACAG	-	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	ACAG	ACAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	MYCBP2-236	NM_015057	exon38	c.5733_5736del	p.1911_1912del	.	.	101.0	43.0	108.0	0.0	.	Atlas-Indel
OR4Q3	441669	hgsc.bcm.edu	37	14	20215780	20215780	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	OR4Q3-71	NM_172194	exon1	c.G194T	p.G65V	TTTTAGGTCATCT	.	65.0	4.0	54.0	0.0	.	Atlas-SNP
CTAGE5	4253	hgsc.bcm.edu	37	14	39771394	39771394	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	CTAGE5-90	NM_001247990	exon10	c.C632G	p.T211R	ACATAACGGATGA	.	273.0	123.0	207.0	0.0	.	Atlas-SNP
FLRT2	23768	hgsc.bcm.edu	37	14	86089505	86089505	+	Silent	SNP	C	C	A	rs35699071	alternate_allele	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	FLRT2-94	NM_013231	exon2	c.C1647A	p.G549G	CGGGGGCGCGGTG	.	123.0	56.0	98.0	0.0	C|0.983;T|0.017	Atlas-SNP
ARID4A	5926	hgsc.bcm.edu	37	14	58833675	58833676	+	Frame_Shift_Del	DEL	TA	TA	-	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	TA	TA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	ARID4A-231	NM_002892	exon23	c.3597_3598del	p.1199_1200del	.	.	109.0	65.0	135.0	0.0	.	Atlas-Indel
IFI27L2	83982	hgsc.bcm.edu	37	14	94594238	94594240	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	AGA	AGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	IFI27L2-90	NM_032036	exon4	c.290_292del	p.97_98del	.	.	132.0	44.0	113.0	0.0	.	Atlas-Indel
SNRPN	6638	hgsc.bcm.edu	37	15	25222108	25222108	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	SNRPN-469	NM_022807	exon10	c.G352T	p.V118L	GCTGGTGTGCCAA	.	43.0	18.0	41.0	0.0	.	Atlas-SNP
ADAMTS7	11173	hgsc.bcm.edu	37	15	79051846	79051846	+	Missense_Mutation	SNP	T	T	C	rs199524707		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	ADAMTS7-226	NM_014272	exon24	c.A4978G	p.I1660V	TGCGGATGGTGGG	.	107.0	14.0	21.0	0.0	.	Atlas-SNP
ZNF592	9640	hgsc.bcm.edu	37	15	85326912	85326912	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	ZNF592-96	NM_014630	exon4	c.C1006G	p.L336V	AGCCCTCTGGAGG	.	107.0	56.0	70.0	0.0	.	Atlas-SNP
ELL3	80237	hgsc.bcm.edu	37	15	44069077	44069078	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	ELL3-91	NM_025165	exon1	c.23_24del	p.8_8del	.	.	57.0	31.0	43.0	0.0	.	Atlas-Indel
ERN2	10595	hgsc.bcm.edu	37	16	23706392	23706392	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	ERN2-322	NM_033266	exon16	c.C1992G	p.V664V	CAGCACGACCTCG	.	169.0	75.0	117.0	0.0	.	Atlas-SNP
ZNF688	146542	hgsc.bcm.edu	37	16	30582444	30582444	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	ZNF688-68	NM_145271	exon2	c.G197A	p.G66E	GGGAATCCTGGGA	.	21.0	7.0	22.0	0.0	.	Atlas-SNP
AMDHD2	51005	hgsc.bcm.edu	37	16	2571079	2571081	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	CTT	CTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	AMDHD2-155	NM_015944	exon3	c.314_316del	p.105_106del	.	.	185.0	52.0	200.0	0.0	.	Pindel
OR3A1	4994	hgsc.bcm.edu	37	17	3195043	3195043	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	OR3A1-70	NM_002550	exon1	c.A834T	p.G278G	GAAAATTCCAACA	.	156.0	59.0	138.0	0.0	.	Atlas-SNP
GHDC	84514	hgsc.bcm.edu	37	17	40342700	40342700	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	GHDC-90	NM_032484	exon8	c.G1230A	p.V410V	CTGCCCCACTGCC	.	99.0	47.0	79.0	0.0	.	Atlas-SNP
CACNA1G	8913	hgsc.bcm.edu	37	17	48638951	48638951	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	CACNA1G-67	NM_198382	exon1	c.C131T	p.A44V	GCAGCGCGGACTC	.	37.0	18.0	20.0	0.0	.	Atlas-SNP
CNTROB	116840	hgsc.bcm.edu	37	17	7842968	7842970	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	AGA	AGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	CNTROB-153	NM_053051	exon8	c.1064_1066del	p.355_356del	.	.	202.0	104.0	157.0	0.0	.	Atlas-Indel
GAREM	64762	hgsc.bcm.edu	37	18	29868135	29868161	+	In_Frame_Del	DEL	TCAGTGTCTTCATTGCATTCACCTGAA	TCAGTGTCTTCATTGCATTCACCTGAA	-	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	TCAGTGTCTTCATTGCATTCACCTGAA	TCAGTGTCTTCATTGCATTCACCTGAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	.	NM_022751	exon4	c.400_426del	p.134_142del	.	.	51.0	15.0	63.0	0.0	.	Atlas-Indel
ARID3A	1820	hgsc.bcm.edu	37	19	964309	964309	+	Nonsense_Mutation	SNP	C	C	A	rs143790786	byfrequency;alternate_allele	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	ARID3A-90	NM_005224	exon5	c.C828A	p.Y276X	GCTGTACGTGCTG	.	339.0	108.0	178.0	0.0	C|0.999;T|0.001	Atlas-SNP
EMR1	2015	hgsc.bcm.edu	37	19	6906459	6906459	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	EMR1-526	NM_001974	exon9	c.G965T	p.C322F	TCAAATGTAAGGA	.	281.0	19.0	152.0	0.0	.	Atlas-SNP
OR10H2	26538	hgsc.bcm.edu	37	19	15839027	15839027	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	OR10H2-70	NM_013939	exon1	c.C174T	p.P58P	CACGCCCATGTAC	.	775.0	250.0	329.0	1.0	.	Atlas-SNP
CCDC8	83987	hgsc.bcm.edu	37	19	46914646	46914646	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	CCDC8-93	NM_032040	exon1	c.G1422A	p.Q474Q	CTTGACCTGTTTC	.	95.0	48.0	96.0	0.0	.	Atlas-SNP
ZNF582	147948	hgsc.bcm.edu	37	19	56901430	56901430	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	ZNF582-138	NM_144690	exon4	c.C172T	p.L58L	GCTCTAGGAAGGA	.	130.0	54.0	114.0	0.0	.	Atlas-SNP
GLMN	11146	hgsc.bcm.edu	37	1	92712112	92712112	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	GLMN-227	NM_053274	exon19	c.C1760G	p.S587C	TCTTCAGAGGTAG	.	66.0	64.0	102.0	0.0	.	Atlas-SNP
SLC27A3	11000	hgsc.bcm.edu	37	1	153748355	153748355	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	SLC27A3-91	NM_024330	exon1	c.G523T	p.G175X	AGCGCTGGAGAAG	.	60.0	4.0	9.0	0.0	.	Atlas-SNP
H3F3A	3020	hgsc.bcm.edu	37	1	226252155	226252155	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	H3F3A-522	NM_002107	exon2	c.G103C	p.G35R	ACTGGAGGGGTGA	.	269.0	246.0	282.0	0.0	.	Atlas-SNP
FMN2	56776	hgsc.bcm.edu	37	1	240371484	240371484	+	Silent	SNP	A	A	T	rs202006855	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	FMN2-145	NM_020066	exon5	c.A3372T	p.L1124L	CCCTCTACCCGGA	.	19.0	9.0	7.0	0.0	A|0.975;T|0.026	Atlas-SNP
SLC37A1	54020	hgsc.bcm.edu	37	21	43954845	43954845	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	SLC37A1-90	NM_018964	exon5	c.C176G	p.A59G	ATGAAGCTGACGT	.	237.0	109.0	232.0	0.0	.	Atlas-SNP
HADHB	3032	hgsc.bcm.edu	37	2	26502030	26502030	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	HADHB-154	NM_000183	exon9	c.A658T	p.S220C	TCCACCAGTGAGA	.	151.0	76.0	96.0	0.0	.	Atlas-SNP
VWA3B	200403	hgsc.bcm.edu	37	2	98920228	98920228	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	VWA3B-139	NM_144992	exon26	c.C3484A	p.H1162N	TGCTCTCATATAA	.	162.0	69.0	107.0	0.0	.	Atlas-SNP
CNTNAP5	129684	hgsc.bcm.edu	37	2	125521704	125521704	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	CNTNAP5-524	NM_130773	exon16	c.T2510A	p.F837Y	AAGACTTCATTCG	.	51.0	21.0	47.0	0.0	.	Atlas-SNP
SSB	6741	hgsc.bcm.edu	37	2	170667792	170667794	+	In_Frame_Del	DEL	GTG	GTG	-	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	GTG	GTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	SSB-94	NM_003142	exon11	c.1096_1098del	p.366_366del	.	.	110.0	45.0	157.0	0.0	.	Atlas-Indel
CCR4	1233	hgsc.bcm.edu	37	3	32995848	32995848	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	CCR4-658	NM_005508	exon2	c.C934T	p.R312C	AAATTTCGCAAGT	.	26.0	10.0	45.0	0.0	.	Atlas-SNP
GRAMD1C	54762	hgsc.bcm.edu	37	3	113655144	113655144	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	GRAMD1C-93	NM_017577	exon14	c.A1488G	p.L496L	TGTATTAAATCAG	.	57.0	26.0	28.0	0.0	.	Atlas-SNP
ILDR1	286676	hgsc.bcm.edu	37	3	121712436	121712436	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	ILDR1-91	NM_175924	exon6	c.C1028G	p.S343C	GCCCAAGACTTTG	.	78.0	76.0	121.0	0.0	.	Atlas-SNP
CEP70	80321	hgsc.bcm.edu	37	3	138219606	138219606	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	CEP70-69	NM_024491	exon14	c.A1339G	p.M447V	CCAGCATAGTATC	.	51.0	46.0	94.0	0.0	.	Atlas-SNP
MED12L	116931	hgsc.bcm.edu	37	3	150804785	150804785	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	MED12L-576	NM_053002	exon1	c.71delT	p.V24fs	.	.	58.0	54.0	76.0	0.0	.	Atlas-Indel
CRIPAK	285464	hgsc.bcm.edu	37	4	1388726	1388726	+	Missense_Mutation	SNP	T	T	C	rs199689156	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	CRIPAK-90	NM_175918	exon1	c.T427C	p.C143R	TGCCCATGCGGAG	.	190.0	13.0	7.0	0.0	T|0.980;C|0.020	Atlas-SNP
CRIPAK	285464	hgsc.bcm.edu	37	4	1388755	1388755	+	Silent	SNP	C	C	G	rs141481663	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	CRIPAK-90	NM_175918	exon1	c.C456G	p.P152P	CGTGCCCATGCGG	.	148.0	20.0	13.0	0.0	C|0.960;G|0.040	Atlas-SNP
CRIPAK	285464	hgsc.bcm.edu	37	4	1388974	1388974	+	Silent	SNP	T	T	C	rs71614969	bycluster	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	CRIPAK-90	NM_175918	exon1	c.T675C	p.D225D	TGCCGATGCGGAG	.	163.0	14.0	35.0	0.0	C|1.000;|0.000	Atlas-SNP
ABLIM2	84448	hgsc.bcm.edu	37	4	8108224	8108225	+	Nonsense_Mutation	INS	-	-	A	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	ABLIM2-47	NM_032432	exon2	c.151_152insT	p.K51_A52delinsX	.	.	113.0	22.0	142.0	0.0	.	Atlas-Indel
SLC6A18	348932	hgsc.bcm.edu	37	5	1244384	1244384	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	SLC6A18-91	NM_182632	exon10	c.G1392A	p.G464G	GTCTGGGAACTAC	.	113.0	49.0	98.0	0.0	.	Atlas-SNP
CMYA5	202333	hgsc.bcm.edu	37	5	79030793	79030793	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	CMYA5-77	NM_153610	exon2	c.G6205T	p.V2069F	TCTTCTGTCAAAA	.	82.0	8.0	56.0	0.0	.	Atlas-SNP
MEF2C	4208	hgsc.bcm.edu	37	5	88100446	88100446	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	MEF2C-704	NM_001193350	exon3	c.A227T	p.H76L	CTCTCATGCGGCT	.	316.0	23.0	243.0	0.0	.	Atlas-SNP
TENM2	57451	hgsc.bcm.edu	37	5	167645355	167645355	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	.	NM_001122679	exon23	c.G4432T	p.V1478F	ACTGGGGTCCTCT	.	298.0	149.0	199.0	0.0	.	Atlas-SNP
CREBRF	153222	hgsc.bcm.edu	37	5	172513606	172513606	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	.	NM_001168393	exon3	c.G112T	p.D38Y	AGTTCGGATCCAG	.	58.0	4.0	56.0	0.0	.	Atlas-SNP
SLC34A1	6569	hgsc.bcm.edu	37	5	176825193	176825193	+	Missense_Mutation	SNP	C	C	T	rs147711480	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	SLC34A1-91	NM_003052	exon13	c.C1826T	p.P609L	CACCCCCGCTGCC	.	22.0	13.0	32.0	0.0	C|0.999;T|0.001	Atlas-SNP
KIAA1191	57179	hgsc.bcm.edu	37	5	175774669	175774672	+	Frame_Shift_Del	DEL	TTTC	TTTC	-	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	TTTC	TTTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	KIAA1191-91	NM_001079685	exon8	c.850_853del	p.284_285del	.	.	61.0	31.0	48.0	0.0	.	Atlas-Indel
APC	324	hgsc.bcm.edu	37	5	112175676	112175677	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	APC-12026	NM_000038	exon16	c.4384_4385del	p.1462_1462del	.	.	51.0	32.0	98.0	0.0	.	Pindel
MAK	4117	hgsc.bcm.edu	37	6	10784764	10784764	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	MAK-335	NM_001242957	exon11	c.G1358A	p.G453E	TTTTCCCCTGTCG	.	134.0	7.0	219.0	0.0	.	Atlas-SNP
TFEB	7942	hgsc.bcm.edu	37	6	41652375	41652375	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	TFEB-659	NM_001271945	exon9	c.C1393A	p.R465R	TGCTCCGGCGGCT	.	158.0	79.0	155.0	0.0	.	Atlas-SNP
TDRD6	221400	hgsc.bcm.edu	37	6	46657547	46657547	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	TDRD6-138	NM_001010870	exon1	c.A1682G	p.D561G	AATTGGATGACAA	.	366.0	168.0	309.0	1.0	.	Atlas-SNP
LIN28B	389421	hgsc.bcm.edu	37	6	105526424	105526424	+	Silent	SNP	C	C	A	rs140802515	byfrequency;alternate_allele	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	LIN28B-90	NM_001004317	exon4	c.C519A	p.P173P	GCCACCCGCGAGT	.	122.0	60.0	75.0	0.0	C|0.999;T|0.001	Atlas-SNP
WDR27	253769	hgsc.bcm.edu	37	6	170033154	170033154	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	WDR27-69	NM_001202550	exon18	c.C1731T	p.L577L	AGCTGCGAGTACG	.	91.0	10.0	98.0	0.0	.	Atlas-SNP
AEBP1	165	hgsc.bcm.edu	37	7	44151812	44151812	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	AEBP1-90	NM_001129	exon17	c.G2109C	p.P703P	TTTCCCGGATCTC	.	60.0	35.0	80.0	0.0	.	Atlas-SNP
EGFR	1956	hgsc.bcm.edu	37	7	55224349	55224349	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	EGFR-44910	NM_201282	exon9	c.G1130A	p.R377K	CATTTAGGGGGTG	.	119.0	66.0	110.0	0.0	.	Atlas-SNP
C7orf60	154743	hgsc.bcm.edu	37	7	112579732	112579732	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	C7orf60-93	NM_152556	exon1	c.G74T	p.R25L	TGCTCCCGGGGCG	.	78.0	42.0	66.0	0.0	.	Atlas-SNP
MCPH1	79648	hgsc.bcm.edu	37	8	6296613	6296613	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	MCPH1-229	NM_024596	exon6	c.C576T	p.P192P	TTCCCCCACCTGT	.	38.0	25.0	22.0	0.0	.	Atlas-SNP
INTS9	55756	hgsc.bcm.edu	37	8	28654146	28654146	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	INTS9-24	NM_001145159	exon8	c.C708T	p.N236N	ATCGCTGTTTTTG	.	167.0	59.0	160.0	0.0	.	Atlas-SNP
VPS13B	157680	hgsc.bcm.edu	37	8	100821724	100821724	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	VPS13B-301	NM_152564	exon44	c.T8063C	p.I2688T	TCATCATCAAGGT	.	87.0	34.0	76.0	0.0	.	Atlas-SNP
EPPK1	83481	hgsc.bcm.edu	37	8	144940706	144940706	+	Missense_Mutation	SNP	C	C	T	rs112377501	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	EPPK1-25	NM_031308	exon1	c.G6716A	p.R2239H	TCCTGGCGGCCGG	.	64.0	4.0	21.0	0.0	C|0.993;T|0.007	Atlas-SNP
RASEF	158158	hgsc.bcm.edu	37	9	85605354	85605354	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	RASEF-280	NM_152573	exon16	c.G2069A	p.S690N	TTGGCACTTGTTT	.	160.0	38.0	120.0	0.0	.	Atlas-SNP
ZCCHC6	79670	hgsc.bcm.edu	37	9	88933891	88933894	+	Frame_Shift_Del	DEL	ATTA	ATTA	-	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	ATTA	ATTA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	ZCCHC6-92	NM_024617	exon16	c.3196_3199del	p.1066_1067del	.	.	257.0	76.0	137.0	0.0	.	Atlas-Indel
MAGED1	9500	hgsc.bcm.edu	37	X	51640148	51640148	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	MAGED1-133	NM_006986	exon4	c.G1397T	p.R466L	AGCCCCGAGATGT	.	163.0	74.0	124.0	0.0	.	Atlas-SNP
HUWE1	10075	hgsc.bcm.edu	37	X	53576374	53576374	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	HUWE1-280	NM_031407	exon67	c.T9581C	p.F3194S	TCCACAAAAAGTA	.	215.0	113.0	178.0	0.0	.	Atlas-SNP
ATRX	546	hgsc.bcm.edu	37	X	76939349	76939349	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	ATRX-248	NM_000489	exon9	c.A1399T	p.K467X	CCTGTTTTCTTGA	.	58.0	18.0	42.0	0.0	.	Atlas-SNP
ABCD1	215	hgsc.bcm.edu	37	X	153001693	153001695	+	In_Frame_Del	DEL	GTC	GTC	-	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	GTC	GTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	ABCD1-130	NM_000033	exon3	c.1208_1210del	p.403_404del	.	.	164.0	70.0	255.0	0.0	.	Pindel
