Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Algorithm
CASP5	838	hgsc.bcm.edu	37	11	104872901	104872901	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	CASP5-661	NM_001136112	exon5	c.C610A	p.R204S	GTCTGCGGTCCTC	.	80.0	4.0	100.0	0.0	.	Atlas-SNP
ENO2	2026	hgsc.bcm.edu	37	12	7025042	7025042	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	ENO2-226	NM_001975	exon2	c.G46A	p.G16R	TCCCGCGGGAACC	.	126.0	66.0	69.0	0.0	.	Atlas-SNP
MGST1	4257	hgsc.bcm.edu	37	12	16516930	16516933	+	Frame_Shift_Del	DEL	TCTT	TCTT	-	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	TCTT	TCTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	MGST1-90	NM_020300	exon4	c.422_425del	p.141_142del	.	.	164.0	58.0	107.0	0.0	.	Atlas-Indel
GPHN	10243	hgsc.bcm.edu	37	14	67578631	67578631	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	GPHN-228	NM_001024218	exon14	c.T1368C	p.D456D	CCAAGATATCAGG	.	150.0	118.0	154.0	0.0	.	Atlas-SNP
CCP110	9738	hgsc.bcm.edu	37	16	19547801	19547801	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	CCP110-90	NM_014711	exon5	c.809delT	p.V270fs	.	.	177.0	75.0	108.0	0.0	.	Atlas-Indel
THAP11	57215	hgsc.bcm.edu	37	16	67876806	67876829	+	In_Frame_Del	DEL	CAGCAGCAGCAGCAGCAACAGCAG	CAGCAGCAGCAGCAGCAACAGCAG	-	rs111586870	byfrequency;alternate_allele	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	CAGCAGCAGCAGCAGCAACAGCAG	CAGCAGCAGCAGCAGCAACAGCAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	THAP11-90	NM_020457	exon1	c.348_371del	p.116_124del	.	.	54.0	24.0	9.0	0.0	-|0.667;CAG|0.333	Atlas-Indel
ATP8B3	148229	hgsc.bcm.edu	37	19	1806115	1806115	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	.	NM_001178002	exon8	c.G572A	p.R191H	TCCTTGCGGAGAC	.	63.0	4.0	80.0	0.0	.	Atlas-SNP
EPHA10	284656	hgsc.bcm.edu	37	1	38227246	38227246	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	EPHA10-1246	NM_001099439	exon3	c.G681C	p.E227D	GGCGCTCTCGGCT	.	52.0	37.0	7.0	0.0	.	Atlas-SNP
DHCR24	1718	hgsc.bcm.edu	37	1	55349290	55349290	+	Splice_Site	SNP	C	C	A	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	DHCR24-91	NM_014762	exon3	c.387+1G>T	.	CTCTCACCTGTTT	.	123.0	10.0	121.0	0.0	.	Atlas-SNP
RGS21	431704	hgsc.bcm.edu	37	1	192335239	192335239	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	RGS21-92	NM_001039152	exon5	c.G444T	p.W148C	AAAATGGCTCCCT	.	16.0	4.0	22.0	0.0	.	Atlas-SNP
OGFR	11054	hgsc.bcm.edu	37	20	61444569	61444569	+	Silent	SNP	A	A	G	rs3204348	byfrequency;by1000genomes	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	OGFR-68	NM_007346	exon7	c.A1602G	p.P534P	CGAGCCAGCCGAG	.	94.0	6.0	11.0	0.0	A|0.979;G|0.021	Atlas-SNP
NEFH	4744	hgsc.bcm.edu	37	22	29885594	29885594	+	Silent	SNP	A	A	T	rs79235463	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	NEFH-90	NM_021076	exon4	c.A1965T	p.P655P	GTCCCCAGAGAAG	.	216.0	61.0	250.0	0.0	A|0.500;T|0.500	Atlas-SNP
SGSM1	129049	hgsc.bcm.edu	37	22	25264825	25264847	+	Splice_Site	DEL	GAGCTGCCCTGTCCCGGGCCCCG	GAGCTGCCCTGTCCCGGGCCCCG	-	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	GAGCTGCCCTGTCCCGGGCCCCG	GAGCTGCCCTGTCCCGGGCCCCG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	SGSM1-27	.	.	.	.	.	.	25.0	16.0	39.0	0.0	.	Pindel
ZMYND10	51364	hgsc.bcm.edu	37	3	50379278	50379278	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	ZMYND10-279	NM_015896	exon10	c.A1084T	p.S362C	AGGGGCTGAACAC	.	68.0	5.0	91.0	0.0	.	Atlas-SNP
GABRA1	2554	hgsc.bcm.edu	37	5	161277848	161277848	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	GABRA1-93	NM_001127643	exon3	c.T32A	p.L11H	ACTGTCTTTGGGC	.	137.0	56.0	65.0	0.0	.	Atlas-SNP
ZFP62	643836	hgsc.bcm.edu	37	5	180275938	180275938	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	.	NM_152283	exon3	c.T2458A	p.S820T	GATTTGATCTGAT	.	194.0	80.0	135.0	0.0	.	Atlas-SNP
TRPA1	8989	hgsc.bcm.edu	37	8	72967768	72967768	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	TRPA1-230	NM_007332	exon12	c.G1432A	p.G478S	GGTCACCTTCATT	.	557.0	225.0	345.0	0.0	.	Atlas-SNP
GADD45G	10912	hgsc.bcm.edu	37	9	92220669	92220669	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	GADD45G-514	NM_006705	exon3	c.242delT	p.I81fs	.	.	143.0	57.0	104.0	0.0	.	Pindel
USP26	83844	hgsc.bcm.edu	37	X	132159761	132159761	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	.	USP26-661	NM_031907	exon1	c.G2488C	p.V830L	GGCTGACAACACT	.	34.0	33.0	46.0	0.0	.	Atlas-SNP
