Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Algorithm
ITIH5	80760	hgsc.bcm.edu	37	10	7608357	7608357	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ITIH5-92	NM_030569	exon13	c.C2163T	p.N721N	CTCTCCGTTCACT	.	82.0	71.0	98.0	0.0	.	Atlas-SNP
MLLT10	8028	hgsc.bcm.edu	37	10	21971185	21971185	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	MLLT10-658	NM_001195626	exon12	c.C1698T	p.N566N	ACACAACGGTAAG	.	38.0	33.0	39.0	0.0	.	Atlas-SNP
KIAA1217	56243	hgsc.bcm.edu	37	10	24832505	24832505	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	KIAA1217-98	NM_019590	exon19	c.G4306A	p.V1436M	CCAGTCGTGTGCC	.	135.0	125.0	204.0	0.0	.	Atlas-SNP
KIAA1462	57608	hgsc.bcm.edu	37	10	30315257	30315257	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	KIAA1462-72	NM_020848	exon3	c.C3820T	p.L1274L	AGCTCAGGACTCT	.	43.0	40.0	53.0	0.0	.	Atlas-SNP
PARD3	56288	hgsc.bcm.edu	37	10	34400183	34400183	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PARD3-92	NM_001184787	exon24	c.C3874T	p.R1292W	CTTGCCGGAAGGG	.	64.0	58.0	66.0	0.0	.	Atlas-SNP
GDF10	2662	hgsc.bcm.edu	37	10	48428896	48428896	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	GDF10-650	NM_004962	exon2	c.G990A	p.A330A	TTTCAGCGCCCGG	.	67.0	64.0	60.0	0.0	.	Atlas-SNP
JMJD1C	221037	hgsc.bcm.edu	37	10	64975209	64975209	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	JMJD1C-275	NM_004241	exon4	c.T172C	p.Y58H	GTGTATAATGGCT	.	59.0	53.0	76.0	0.0	.	Atlas-SNP
MICU1	10367	hgsc.bcm.edu	37	10	74235015	74235015	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	.	NM_001195518	exon8	c.G776A	p.R259H	CTGTGGCGCATAC	.	136.0	129.0	188.0	0.0	.	Atlas-SNP
GRID1	2894	hgsc.bcm.edu	37	10	87379740	87379740	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	GRID1-142	NM_017551	exon14	c.C2244T	p.Y748Y	GGCTGCGTATTCC	.	194.0	166.0	298.0	2.0	.	Atlas-SNP
XPNPEP1	7511	hgsc.bcm.edu	37	10	111633162	111633162	+	Missense_Mutation	SNP	C	C	T	rs201456347		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	XPNPEP1-94	NM_001167604	exon15	c.G1343A	p.R448Q	ATTGTCCGCGTCA	.	146.0	129.0	222.0	0.0	C|0.999;T|0.001	Atlas-SNP
C10orf120	399814	hgsc.bcm.edu	37	10	124458908	124458908	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	C10orf120-91	NM_001010912	exon2	c.G197A	p.R66K	TCTGATCTGTAGA	.	65.0	18.0	79.0	0.0	.	Atlas-SNP
NRIP3	56675	hgsc.bcm.edu	37	11	9009807	9009807	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	NRIP3-186	NM_020645	exon2	c.G197A	p.R66K	AGGCGCCTCTGCA	.	99.0	88.0	127.0	0.0	.	Atlas-SNP
PLEKHA7	144100	hgsc.bcm.edu	37	11	16838355	16838355	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PLEKHA7-227	NM_175058	exon11	c.G1858A	p.A620T	TGACAGCGTGGCC	.	70.0	63.0	139.0	0.0	.	Atlas-SNP
C11orf95	65998	hgsc.bcm.edu	37	11	63531283	63531283	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	.	NM_001144936	exon5	c.C1644T	p.D548D	CTCTTCGTCCTCC	.	11.0	10.0	42.0	0.0	.	Atlas-SNP
RCOR2	283248	hgsc.bcm.edu	37	11	63679516	63679516	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	RCOR2-92	NM_173587	exon12	c.C1393T	p.R465X	GCTGTCGGAGCAG	.	10.0	10.0	18.0	0.0	.	Atlas-SNP
RPS6KA4	8986	hgsc.bcm.edu	37	11	64127716	64127716	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	RPS6KA4-1036	NM_003942	exon3	c.C209T	p.A70V	GCAAGGCGGCGCT	.	48.0	40.0	32.0	0.0	.	Atlas-SNP
GAL3ST3	89792	hgsc.bcm.edu	37	11	65810719	65810719	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	GAL3ST3-91	NM_033036	exon3	c.C555T	p.R185R	GGGCGCGCGCAGG	.	108.0	57.0	42.0	0.0	.	Atlas-SNP
SPTBN2	6712	hgsc.bcm.edu	37	11	66483354	66483354	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	SPTBN2-155	NM_006946	exon3	c.C256T	p.R86W	CGTCCCGGAGGTC	.	114.0	54.0	152.0	0.0	.	Atlas-SNP
ATM	472	hgsc.bcm.edu	37	11	108098418	108098418	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	ATM,NS,carcinoma,-1	ATM-3419	NM_000051	exon2	c.C67T	p.R23X	ACAGAACGAAAGG	.	119.0	110.0	212.0	0.0	.	Atlas-SNP
CACNA2D4	93589	hgsc.bcm.edu	37	12	1906598	1906598	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	CACNA2D4-23	NM_172364	exon35	c.C3099T	p.C1033C	GGGCCCGCACTCC	.	30.0	21.0	25.0	0.0	.	Atlas-SNP
NRIP2	83714	hgsc.bcm.edu	37	12	2937196	2937196	+	Missense_Mutation	SNP	A	A	G	rs200104814		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	NRIP2-187	NM_031474	exon4	c.T596C	p.L199P	GCTTTTAGGACCC	.	38.0	12.0	38.0	0.0	A|0.999;G|0.001	Atlas-SNP
CD9	928	hgsc.bcm.edu	37	12	6342621	6342621	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	CD9-91	NM_001769	exon4	c.C317T	p.A106V	TAGCTGCGGCCAT	.	193.0	98.0	144.0	0.0	.	Atlas-SNP
ABCC9	10060	hgsc.bcm.edu	37	12	21962829	21962829	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ABCC9-96	NM_020297	exon35	c.T4272C	p.I1424I	CTGAGCAATTTCT	.	35.0	14.0	18.0	0.0	.	Atlas-SNP
ITPR2	3709	hgsc.bcm.edu	37	12	26493203	26493203	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ITPR2-542	NM_002223	exon56	c.G7916A	p.G2639D	CTGTCGCCTTCAT	.	145.0	56.0	110.0	0.0	.	Atlas-SNP
ITPR2	3709	hgsc.bcm.edu	37	12	26784944	26784944	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ITPR2-542	NM_002223	exon22	c.A2789G	p.Q930R	ACCATCTGGGTCA	.	141.0	58.0	139.0	0.0	.	Atlas-SNP
MLL2	8085	hgsc.bcm.edu	37	12	49420173	49420173	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	MLL2-612	NM_003482	exon48	c.G15576A	p.L5192L	GTGAGGCAGCAGC	.	183.0	86.0	186.0	0.0	.	Atlas-SNP
DHH	50846	hgsc.bcm.edu	37	12	49483720	49483720	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	DHH-710	NM_021044	exon3	c.C1113T	p.P371P	CCCGCCGGGGAGC	.	140.0	65.0	102.0	0.0	.	Atlas-SNP
KRT7	3855	hgsc.bcm.edu	37	12	52627326	52627326	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	KRT7-90	NM_005556	exon1	c.C246A	p.P82P	CGACCCCTCCCTC	.	142.0	60.0	90.0	0.0	.	Atlas-SNP
KRT77	374454	hgsc.bcm.edu	37	12	53088535	53088535	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	KRT77-187	NM_175078	exon5	c.G955A	p.V319I	GGATGACGTTGGT	.	151.0	76.0	138.0	0.0	.	Atlas-SNP
GPR182	11318	hgsc.bcm.edu	37	12	57389484	57389484	+	Missense_Mutation	SNP	G	G	A	rs145408449	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	GPR182-500	NM_007264	exon2	c.G491A	p.R164H	GGCAGCGTTACCA	.	177.0	14.0	136.0	0.0	G|1.000;A|0.000	Atlas-SNP
LRP1	4035	hgsc.bcm.edu	37	12	57584685	57584685	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	LRP1-596	NM_002332	exon43	c.C7129T	p.R2377C	GACATCCGTACCC	.	178.0	28.0	150.0	0.0	.	Atlas-SNP
MDM2	4193	hgsc.bcm.edu	37	12	69210628	69210628	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	MDM2-1270	NM_002392	exon4	c.C211T	p.R71X	ACTAAACGATTAT	.	77.0	26.0	42.0	0.0	.	Atlas-SNP
NAV3	89795	hgsc.bcm.edu	37	12	78515967	78515967	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	NAV3-279	NM_014903	exon16	c.C3997T	p.P1333S	TCCAGCCCAGCAT	.	264.0	45.0	239.0	0.0	.	Atlas-SNP
MGAT4C	25834	hgsc.bcm.edu	37	12	86377312	86377312	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	MGAT4C-93	NM_013244	exon6	c.T284C	p.L95S	CTTTGTAAAGGTG	.	105.0	60.0	59.0	0.0	.	Atlas-SNP
CEP290	80184	hgsc.bcm.edu	37	12	88479859	88479859	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	CEP290-96	NM_025114	exon34	c.G4394A	p.R1465Q	ATTATTCGAATGT	.	107.0	47.0	82.0	0.0	.	Atlas-SNP
RNFT2	84900	hgsc.bcm.edu	37	12	117273985	117273985	+	Splice_Site	SNP	G	G	C	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	.	NM_001109903	exon10	c.1099-1G>C	.	CTCAAAGAACTAT	.	107.0	45.0	91.0	0.0	.	Atlas-SNP
FBXW8	26259	hgsc.bcm.edu	37	12	117465865	117465865	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	FBXW8-229	NM_153348	exon11	c.C1685T	p.A562V	AGTTTGCGGTGGA	.	115.0	53.0	88.0	0.0	.	Atlas-SNP
GCN1L1	10985	hgsc.bcm.edu	37	12	120613993	120613993	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	GCN1L1-94	NM_006836	exon10	c.C866T	p.T289M	TCAAGCGTCACTG	.	154.0	23.0	121.0	0.0	.	Atlas-SNP
SETD1B	23067	hgsc.bcm.edu	37	12	122261635	122261635	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	SETD1B-86	NM_015048	exon12	c.C5021T	p.T1674M	ACGACACGCTCTG	.	148.0	21.0	148.0	0.0	.	Atlas-SNP
SLC7A1	6541	hgsc.bcm.edu	37	13	30088674	30088674	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	SLC7A1-90	NM_003045	exon13	c.G1833A	p.A611A	CAGGGACGCCTCC	.	44.0	43.0	75.0	0.0	.	Atlas-SNP
SLC10A2	6555	hgsc.bcm.edu	37	13	103701788	103701788	+	Missense_Mutation	SNP	G	G	A	rs145541774		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	SLC10A2-94	NM_000452	exon5	c.C770T	p.T257M	GCAACCGTTCGGC	.	97.0	8.0	137.0	0.0	G|1.000;A|0.000	Atlas-SNP
ATP11A	23250	hgsc.bcm.edu	37	13	113516786	113516786	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ATP11A-138	NM_032189	exon25	c.G2888A	p.R963H	GCTGGCGCGTGTT	.	106.0	100.0	161.0	1.0	.	Atlas-SNP
IRF9	10379	hgsc.bcm.edu	37	14	24631381	24631381	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	IRF9-69	NM_006084	exon2	c.C28T	p.R10X	TGCACCCGAAAAC	.	167.0	151.0	267.0	2.0	.	Atlas-SNP
RPL10L	140801	hgsc.bcm.edu	37	14	47120739	47120739	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	RPL10L-91	NM_080746	exon1	c.C201T	p.A67A	ACGGGCGGCCTCC	.	93.0	78.0	126.0	1.0	.	Atlas-SNP
NID2	22795	hgsc.bcm.edu	37	14	52478319	52478319	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	NID2-158	NM_007361	exon17	c.G3503A	p.R1168H	CCAGCACGGCTGA	.	89.0	70.0	110.0	0.0	.	Atlas-SNP
DACT1	51339	hgsc.bcm.edu	37	14	59113818	59113818	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	DACT1-291	NM_001079520	exon4	c.G2366A	p.R789Q	GCTTTCGGTCTGG	.	50.0	46.0	57.0	0.0	.	Atlas-SNP
JKAMP	51528	hgsc.bcm.edu	37	14	59970693	59970693	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	JKAMP-67	NM_001098625	exon7	c.T821C	p.L274P	TGCCCCTTTTGGC	.	108.0	8.0	129.0	0.0	.	Atlas-SNP
NUMB	8650	hgsc.bcm.edu	37	14	73743997	73743997	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	NUMB-1062	NM_001005744	exon12	c.C1101T	p.T367T	CCACTCGGTCCCT	.	48.0	34.0	82.0	0.0	.	Atlas-SNP
CYFIP1	23191	hgsc.bcm.edu	37	15	22940826	22940826	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	CYFIP1-99	NM_014608	exon11	c.C1091T	p.A364V	AGCTGGCGCGCTA	.	150.0	133.0	249.0	1.0	.	Atlas-SNP
PGBD4	161779	hgsc.bcm.edu	37	15	34396376	34396376	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PGBD4-90	NM_152595	exon1	c.C1644T	p.Y548Y	CCAATACGACAAG	.	51.0	46.0	94.0	0.0	.	Atlas-SNP
DUOX2	50506	hgsc.bcm.edu	37	15	45394110	45394110	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	DUOX2-95	NM_014080	exon21	c.C2732T	p.S911L	AATCCCGACTCCC	.	192.0	168.0	305.0	0.0	.	Atlas-SNP
RASGRF1	5923	hgsc.bcm.edu	37	15	79323771	79323771	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	RASGRF1-662	NM_001145648	exon8	c.C1233T	p.Y411Y	CTTGGCGTAGTCC	.	86.0	80.0	164.0	1.0	.	Atlas-SNP
MESDC2	23184	hgsc.bcm.edu	37	15	81271798	81271798	+	Missense_Mutation	SNP	C	C	T	rs185628590		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	MESDC2-90	NM_015154	exon3	c.G467A	p.R156H	ATAGCACGGTCTG	.	71.0	62.0	127.0	0.0	C|0.999;T|0.000	Atlas-SNP
TLN2	83660	hgsc.bcm.edu	37	15	63063254	63063289	+	In_Frame_Del	DEL	TGCTGGACCAGACCAAGACTCTCGCAGAGTCTGCCT	TGCTGGACCAGACCAAGACTCTCGCAGAGTCTGCCT	-	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	TGCTGGACCAGACCAAGACTCTCGCAGAGTCTGCCT	TGCTGGACCAGACCAAGACTCTCGCAGAGTCTGCCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	TLN2-573	NM_015059	exon39	c.5287_5322del	p.1763_1774del	.	.	66.0	27.0	142.0	0.0	.	Atlas-Indel
PRR25	388199	hgsc.bcm.edu	37	16	857545	857545	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PRR25-135	NM_001013638	exon2	c.C542T	p.P181L	AGGCGCCGGGCCT	.	31.0	13.0	12.0	0.0	.	Atlas-SNP
C16orf59	80178	hgsc.bcm.edu	37	16	2514193	2514193	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	C16orf59-90	NM_025108	exon9	c.G1118A	p.R373Q	AGCTGCGAGTGGC	.	155.0	32.0	118.0	0.0	.	Atlas-SNP
ZSCAN10	84891	hgsc.bcm.edu	37	16	3139112	3139112	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ZSCAN10-227	NM_032805	exon5	c.G2158A	p.A720T	CGCGGGCGTGGGT	.	80.0	30.0	9.0	0.0	.	Atlas-SNP
ZNF205	7755	hgsc.bcm.edu	37	16	3170139	3170139	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ZNF205-90	NM_001042428	exon7	c.C1478T	p.A493V	TCACCGCGCACCA	.	385.0	204.0	141.0	0.0	.	Atlas-SNP
ZNF213	7760	hgsc.bcm.edu	37	16	3191159	3191159	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ZNF213-90	NM_001134655	exon6	c.C1191T	p.G397G	CACGGGCGAGAAG	.	281.0	114.0	164.0	0.0	.	Atlas-SNP
ZNF500	26048	hgsc.bcm.edu	37	16	4802835	4802835	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ZNF500-93	NM_021646	exon6	c.G985A	p.E329K	CACATTCGGGGCA	.	181.0	82.0	147.0	0.0	.	Atlas-SNP
ZNF785	146540	hgsc.bcm.edu	37	16	30594258	30594258	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ZNF785-91	NM_152458	exon3	c.G841A	p.E281K	GCTTCTCGCCCGT	.	183.0	67.0	147.0	0.0	.	Atlas-SNP
STX1B	112755	hgsc.bcm.edu	37	16	31004545	31004545	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	STX1B-90	NM_052874	exon9	c.G692A	p.R231H	TCGATGCGGTCAA	.	247.0	108.0	262.0	0.0	.	Atlas-SNP
VPS35	55737	hgsc.bcm.edu	37	16	46697064	46697064	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	VPS35-90	NM_018206	exon14	c.G1658A	p.W553X	TTTTCCCATTTGT	.	73.0	31.0	26.0	0.0	.	Atlas-SNP
KATNB1	10300	hgsc.bcm.edu	37	16	57775658	57775658	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	KATNB1-90	NM_005886	exon3	c.C100T	p.R34W	TCCGGGCGGCTGC	.	189.0	24.0	173.0	0.0	.	Atlas-SNP
CDH16	1014	hgsc.bcm.edu	37	16	66946627	66946627	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	CDH16-93	NM_001204746	exon9	c.C931T	p.R311X	CTGCTCGGAGTGG	.	183.0	79.0	157.0	0.0	.	Atlas-SNP
ENKD1	84080	hgsc.bcm.edu	37	16	67697371	67697371	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	.	NM_032140	exon6	c.C832T	p.R278C	GCATGCGCGTGTG	.	97.0	42.0	38.0	0.0	.	Atlas-SNP
CDH3	1001	hgsc.bcm.edu	37	16	68732181	68732181	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	CDH3-950	NM_001793	exon16	c.G2368A	p.A790T	GACGCCGCGTCCC	.	221.0	13.0	143.0	0.0	.	Atlas-SNP
GLG1	2734	hgsc.bcm.edu	37	16	74491779	74491779	+	Silent	SNP	G	G	A	rs148460697	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	GLG1-136	NM_012201	exon24	c.C3258T	p.R1086R	ACGCCCGCGGCCA	.	251.0	47.0	191.0	0.0	G|1.000;A|0.000	Atlas-SNP
GSE1	23199	hgsc.bcm.edu	37	16	85699630	85699630	+	Missense_Mutation	SNP	T	T	C	rs17853763		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	.	NM_001134473	exon12	c.T2495C	p.V832A	TTGGTGTTGCTGC	.	145.0	8.0	78.0	0.0	T|1.000;|0.000	Atlas-SNP
FOXC2	2303	hgsc.bcm.edu	37	16	86602305	86602305	+	Missense_Mutation	SNP	A	A	G	rs138612549		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	FOXC2-226	NM_005251	exon1	c.A1364G	p.N455S	TGTTCAACTCCCA	.	196.0	100.0	154.0	0.0	A|0.998;G|0.002	Atlas-SNP
ANKRD11	29123	hgsc.bcm.edu	37	16	89346959	89346959	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ANKRD11-139	NM_001256182	exon10	c.G5991A	p.A1997A	GGGGTCCGCGGGG	.	70.0	34.0	29.0	0.0	.	Atlas-SNP
PRPF8	10594	hgsc.bcm.edu	37	17	1561614	1561614	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PRPF8-525	NM_006445	exon34	c.G5438A	p.R1813H	CCTGTGCGTGGGT	.	172.0	161.0	324.0	0.0	.	Atlas-SNP
SGSM2	9905	hgsc.bcm.edu	37	17	2265553	2265553	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	SGSM2-68	NM_014853	exon4	c.G447A	p.A149A	CCTGGCGGAAAAC	.	70.0	66.0	131.0	0.0	.	Atlas-SNP
ATP2A3	489	hgsc.bcm.edu	37	17	3840801	3840801	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ATP2A3-156	NM_174955	exon15	c.G2230A	p.V744M	CAGCCACGATGGA	.	144.0	136.0	314.0	1.0	.	Atlas-SNP
EVPLL	645027	hgsc.bcm.edu	37	17	18286644	18286644	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	.	NM_001145127	exon8	c.C732T	p.D244D	GGAGGACGGCAAG	.	45.0	44.0	60.0	0.0	.	Atlas-SNP
MYO18A	399687	hgsc.bcm.edu	37	17	27419408	27419408	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	MYO18A-22	NM_203318	exon34	c.G5140A	p.E1714K	GGTCTTCGATCTC	.	66.0	57.0	120.0	0.0	.	Atlas-SNP
KRT12	3859	hgsc.bcm.edu	37	17	39018841	39018841	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	KRT12-91	NM_000223	exon7	c.G1363A	p.A455T	ACTGTGCTTGTGA	.	78.0	73.0	129.0	0.0	.	Atlas-SNP
PTRF	284119	hgsc.bcm.edu	37	17	40574938	40574938	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PTRF-153	NM_012232	exon1	c.A178G	p.K60E	TGATTTTGTCCAG	.	137.0	125.0	191.0	0.0	.	Atlas-SNP
ASB16	92591	hgsc.bcm.edu	37	17	42254580	42254580	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ASB16-227	NM_080863	exon3	c.G1044A	p.A348A	CGGGGCGCAGCCA	.	33.0	11.0	37.0	0.0	.	Atlas-SNP
NGFR	4804	hgsc.bcm.edu	37	17	47590175	47590175	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	NGFR-947	NM_002507	exon6	c.C1088T	p.A363V	ACCTGGCGGGCGA	.	204.0	95.0	258.0	0.0	.	Atlas-SNP
ABCC3	8714	hgsc.bcm.edu	37	17	48741343	48741343	+	Silent	SNP	G	G	A	rs191057975		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ABCC3-93	NM_001144070	exon10	c.G1209A	p.A403A	ACGTGCGTCCACT	.	104.0	93.0	298.0	0.0	G|0.999;A|0.001	Atlas-SNP
KIAA0195	9772	hgsc.bcm.edu	37	17	73484865	73484865	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	KIAA0195-91	NM_014738	exon7	c.C638T	p.P213L	TGGAGCCGGGAGA	.	49.0	40.0	57.0	0.0	.	Atlas-SNP
DNAH17	8632	hgsc.bcm.edu	37	17	76570839	76570839	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	DNAH17-142	NM_173628	exon2	c.A301G	p.I101V	GGCTGATGTCGCC	.	140.0	130.0	220.0	0.0	.	Atlas-SNP
PCYT2	5833	hgsc.bcm.edu	37	17	79865456	79865456	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PCYT2-68	NM_002861	exon6	c.C511T	p.R171W	ACTCCCGGTACTC	.	128.0	112.0	193.0	1.0	.	Atlas-SNP
FASN	2194	hgsc.bcm.edu	37	17	80039618	80039618	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	FASN-90	NM_004104	exon37	c.G6265A	p.A2089T	AGGACGCCATGCG	.	115.0	46.0	200.0	0.0	.	Atlas-SNP
GREB1L	80000	hgsc.bcm.edu	37	18	18981163	18981163	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	.	NM_001142966	exon6	c.G585A	p.T195T	TTTCACGGAATTT	.	90.0	84.0	145.0	0.0	.	Atlas-SNP
AP3D1	8943	hgsc.bcm.edu	37	19	2129403	2129403	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	AP3D1-90	NM_003938	exon7	c.A646G	p.K216E	AGTTCTTAGGGTT	.	213.0	196.0	306.0	1.0	.	Atlas-SNP
TJP3	27134	hgsc.bcm.edu	37	19	3734400	3734400	+	Missense_Mutation	SNP	G	G	A	rs200603772	alternate_allele	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	TJP3-92	NM_001267560	exon8	c.G953A	p.R318Q	CTCAGCGGAGCCC	.	47.0	47.0	61.0	0.0	G|0.999;T|0.000	Atlas-SNP
KDM4B	23030	hgsc.bcm.edu	37	19	5143983	5143983	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	KDM4B-226	NM_015015	exon19	c.C2556T	p.C852C	GAAATGCGTGTAC	.	43.0	39.0	107.0	0.0	.	Atlas-SNP
SLC25A23	79085	hgsc.bcm.edu	37	19	6452332	6452332	+	Silent	SNP	G	G	A	rs148491192		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	SLC25A23-92	NM_024103	exon8	c.C1062T	p.A354A	GTAGACGGCCAGG	.	64.0	64.0	136.0	0.0	G|1.000;A|0.000	Atlas-SNP
TNPO2	30000	hgsc.bcm.edu	37	19	12814290	12814290	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	TNPO2-227	NM_001136196	exon19	c.G2161A	p.V721I	TGCAGACGGAGAT	.	135.0	125.0	245.0	0.0	.	Atlas-SNP
PRDX2	7001	hgsc.bcm.edu	37	19	12910730	12910730	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PRDX2-90	NM_005809	exon5	c.T454A	p.F152I	CATCCACGGAGCG	.	117.0	106.0	191.0	1.0	.	Atlas-SNP
NR2F6	2063	hgsc.bcm.edu	37	19	17343368	17343368	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	NR2F6-186	NM_005234	exon4	c.C1008T	p.T336T	ATACTCGGTGAGG	.	31.0	29.0	26.0	0.0	.	Atlas-SNP
NR2C2AP	126382	hgsc.bcm.edu	37	19	19313147	19313147	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	NR2C2AP-23	NM_176880	exon4	c.C296T	p.S99L	TGAAGCGAGTTGT	.	80.0	69.0	150.0	0.0	.	Atlas-SNP
CHST8	64377	hgsc.bcm.edu	37	19	34263477	34263477	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	CHST8-156	NM_001127895	exon5	c.G784A	p.E262K	CCCTTCGAGAGGC	.	139.0	127.0	218.0	0.0	.	Atlas-SNP
TMEM145	284339	hgsc.bcm.edu	37	19	42821906	42821906	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	TMEM145-90	NM_173633	exon12	c.G946A	p.G316S	CCGGCCGGCTACG	.	144.0	8.0	178.0	0.0	.	Atlas-SNP
ZNF225	7768	hgsc.bcm.edu	37	19	44636010	44636010	+	Missense_Mutation	SNP	C	C	T	rs200370101		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	.	NM_013362	exon5	c.C1243T	p.R415C	TCACAACGTTATT	.	74.0	65.0	128.0	0.0	.	Atlas-SNP
ZNF473	25888	hgsc.bcm.edu	37	19	50549939	50549939	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ZNF473-91	NM_015428	exon5	c.C2239T	p.R747C	CTTGTCCGCCACC	.	76.0	71.0	88.0	0.0	.	Atlas-SNP
ASPDH	554235	hgsc.bcm.edu	37	19	51015404	51015404	+	Missense_Mutation	SNP	T	T	C	rs12977172	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ASPDH-90	NM_001024656	exon4	c.A482G	p.Q161R	AGGCTCTGCCAGA	.	8.0	8.0	7.0	0.0	T|0.228;C|0.772	Atlas-SNP
TMC4	147798	hgsc.bcm.edu	37	19	54669182	54669182	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	TMC4-91	NM_001145303	exon6	c.C934T	p.R312C	GCTGGCGCAGCCG	.	86.0	46.0	161.0	0.0	.	Atlas-SNP
NLRP5	126206	hgsc.bcm.edu	37	19	56544918	56544918	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	NLRP5-162	NM_153447	exon9	c.G2458A	p.A820T	AGAAATGCACAGA	.	137.0	126.0	192.0	0.0	.	Atlas-SNP
ZNF135	7694	hgsc.bcm.edu	37	19	58579725	58579725	+	Missense_Mutation	SNP	C	C	T	rs138910447		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ZNF135-91	NM_007134	exon4	c.C1945T	p.R649W	CAGCACCGGAGGA	.	106.0	98.0	195.0	0.0	C|1.000;T|0.000	Atlas-SNP
ZNF324	25799	hgsc.bcm.edu	37	19	58982784	58982784	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ZNF324-90	NM_014347	exon4	c.G925A	p.G309S	CACAGCGGCGAGA	.	304.0	252.0	158.0	1.0	.	Atlas-SNP
SKI	6497	hgsc.bcm.edu	37	1	2235335	2235335	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	SKI-838	NM_003036	exon4	c.C1268T	p.P423L	TCGCACCGCCGGC	.	95.0	86.0	83.0	0.0	.	Atlas-SNP
CASP9	842	hgsc.bcm.edu	37	1	15820441	15820441	+	Silent	SNP	G	G	A	rs149161953		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	CASP9-1083	NM_032996	exon8	c.C855T	p.D285D	GATGTCGTCCAGG	.	47.0	42.0	49.0	0.0	G|0.999;A|0.000	Atlas-SNP
UBR4	23352	hgsc.bcm.edu	37	1	19479813	19479813	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	UBR4-612	NM_020765	exon46	c.C6814T	p.R2272C	TTTTGCGCTTTCG	.	106.0	99.0	179.0	0.0	.	Atlas-SNP
WNT4	54361	hgsc.bcm.edu	37	1	22446583	22446583	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	WNT4-524	NM_030761	exon5	c.G1016A	p.R339Q	CACTGCCGGCACT	.	85.0	78.0	79.0	0.0	.	Atlas-SNP
PIGV	55650	hgsc.bcm.edu	37	1	27121404	27121404	+	Silent	SNP	G	G	A	rs147229452		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PIGV-91	NM_017837	exon3	c.G879A	p.P293P	TGAACCGCCTTGG	.	181.0	167.0	213.0	0.0	G|1.000;A|0.000	Atlas-SNP
HDAC1	3065	hgsc.bcm.edu	37	1	32792571	32792571	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	HDAC1-659	NM_004964	exon5	c.G387A	p.T129T	GCAGACGGACATC	.	76.0	68.0	138.0	0.0	.	Atlas-SNP
AGO3	192669	hgsc.bcm.edu	37	1	36437637	36437637	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	.	NM_024852	exon4	c.G325A	p.V109I	TTAGACGTTACTT	.	124.0	111.0	234.0	0.0	.	Atlas-SNP
SMAP2	64744	hgsc.bcm.edu	37	1	40872411	40872411	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	SMAP2-68	NM_001198979	exon2	c.C92T	p.P31L	CAGGGCCGCGATG	.	64.0	62.0	81.0	0.0	.	Atlas-SNP
PTPRF	5792	hgsc.bcm.edu	37	1	44057523	44057523	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PTPRF-232	NM_130440	exon10	c.G1572A	p.S524S	GGAGTCGGACACC	.	138.0	40.0	254.0	0.0	.	Atlas-SNP
ASH1L	55870	hgsc.bcm.edu	37	1	155348172	155348172	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ASH1L-234	NM_018489	exon10	c.G6232A	p.V2078I	CATCAACGTAGAC	.	93.0	7.0	138.0	0.0	.	Atlas-SNP
PEAR1	375033	hgsc.bcm.edu	37	1	156882744	156882744	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	PEAR1,NS,carcinoma,-1	PEAR1-71	NM_001080471	exon18	c.C2392T	p.R798C	AGCGGGCGCCTGG	.	96.0	90.0	148.0	0.0	.	Atlas-SNP
ASTN1	460	hgsc.bcm.edu	37	1	176833494	176833494	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ASTN1-319	NM_004319	exon23	c.G3811A	p.D1271N	TGAGGTCCCGGCT	.	74.0	71.0	124.0	1.0	.	Atlas-SNP
ZNF648	127665	hgsc.bcm.edu	37	1	182025773	182025773	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ZNF648-91	NM_001009992	exon2	c.C1373T	p.A458V	GGCTGCGCGAAGG	.	114.0	23.0	66.0	0.0	.	Atlas-SNP
HMCN1	83872	hgsc.bcm.edu	37	1	185956660	185956660	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	HMCN1-113	NM_031935	exon20	c.C3032T	p.S1011F	AACCGTCTGTCAT	.	66.0	55.0	93.0	0.0	.	Atlas-SNP
CFH	3075	hgsc.bcm.edu	37	1	196659281	196659281	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	CFH-566	NM_000186	exon9	c.C1248T	p.C416C	TGCCTGCCATCCT	.	432.0	151.0	646.0	2.0	.	Atlas-SNP
ASPM	259266	hgsc.bcm.edu	37	1	197060024	197060024	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ASPM-615	NM_001206846	exon22	c.C4837T	p.R1613C	TTTTACGGAGGAG	.	47.0	15.0	40.0	0.0	.	Atlas-SNP
KCNH1	3756	hgsc.bcm.edu	37	1	210856743	210856743	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	KCNH1-94	NM_002238	exon11	c.G2769A	p.Q923Q	AGAGAGCTGTTTC	.	87.0	33.0	161.0	0.0	.	Atlas-SNP
USH2A	7399	hgsc.bcm.edu	37	1	216373375	216373375	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	USH2A-115	NM_007123	exon17	c.G3405C	p.R1135S	TACACTCCTTGTT	.	110.0	104.0	154.0	0.0	.	Atlas-SNP
DISP1	84976	hgsc.bcm.edu	37	1	223116579	223116579	+	Silent	SNP	G	G	A	rs143316612	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	DISP1-68	NM_032890	exon4	c.G414A	p.T138T	GACTACGTGCTGT	.	213.0	186.0	290.0	1.0	G|0.998;A|0.002	Atlas-SNP
ZBTB18	10472	hgsc.bcm.edu	37	1	244218382	244218382	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	.	NM_205768	exon2	c.C1306T	p.R436C	CTCAAGCGCCACG	.	184.0	167.0	324.0	0.0	.	Atlas-SNP
SLC4A11	83959	hgsc.bcm.edu	37	20	3210042	3210042	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	SLC4A11-91	NM_001174090	exon15	c.C1928T	p.A643V	AGCACCGCGATGG	.	127.0	27.0	135.0	0.0	.	Atlas-SNP
SIGLEC1	6614	hgsc.bcm.edu	37	20	3673211	3673211	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	SIGLEC1-167	NM_023068	exon15	c.C3987A	p.A1329A	GCCCTGGGCATCC	.	56.0	23.0	69.0	0.0	.	Atlas-SNP
PLCB1	23236	hgsc.bcm.edu	37	20	8609053	8609053	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PLCB1-297	NM_015192	exon4	c.T359G	p.F120C	ATCTCGTGGCTTT	.	219.0	83.0	181.0	0.0	.	Atlas-SNP
ISM1	140862	hgsc.bcm.edu	37	20	13269302	13269302	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ISM1-68	NM_080826	exon4	c.G759A	p.S253S	AGAATCGAGGACC	.	233.0	104.0	153.0	0.0	.	Atlas-SNP
RRBP1	6238	hgsc.bcm.edu	37	20	17622479	17622479	+	Missense_Mutation	SNP	G	G	A	rs146531264	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	RRBP1-92	NM_001042576	exon6	c.C848T	p.A283V	ACAGCCGCATCTT	.	151.0	14.0	142.0	0.0	G|0.999;A|0.001	Atlas-SNP
RBBP9	10741	hgsc.bcm.edu	37	20	18471080	18471080	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	RBBP9-227	NM_006606	exon4	c.C293T	p.A98V	GTGTACGCAGACA	.	248.0	116.0	223.0	0.0	.	Atlas-SNP
ADA	100	hgsc.bcm.edu	37	20	43251246	43251246	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ADA-653	NM_000022	exon9	c.G828A	p.T276T	ATGCTCCGTGTCC	.	199.0	84.0	155.0	0.0	.	Atlas-SNP
ZBP1	81030	hgsc.bcm.edu	37	20	56186832	56186832	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ZBP1-228	NM_001160418	exon5	c.C600T	p.H200H	GACGCCGTGGAGC	.	136.0	26.0	86.0	0.0	.	Atlas-SNP
SLMO2	51012	hgsc.bcm.edu	37	20	57611597	57611597	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	SLMO2-45	NM_016045	exon5	c.G394A	p.V132M	CTTTCACGGTAAT	.	236.0	105.0	158.0	0.0	.	Atlas-SNP
SYCP2	10388	hgsc.bcm.edu	37	20	58452496	58452496	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	SYCP2-525	NM_014258	exon32	c.G3094A	p.E1032K	CTGATTCTGAATT	.	43.0	20.0	22.0	0.0	.	Atlas-SNP
CDH4	1002	hgsc.bcm.edu	37	20	60348149	60348149	+	Missense_Mutation	SNP	G	G	A	rs143400273	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	CDH4-282	NM_001252339	exon3	c.G265A	p.G89R	GCCAACGGGCTGA	.	298.0	145.0	124.0	0.0	G|0.999;A|0.001	Atlas-SNP
RTEL1	51750	hgsc.bcm.edu	37	20	62297419	62297419	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	RTEL1-44	NM_016434	exon7	c.G601A	p.G201R	AAGAGCGGAAGCA	.	145.0	65.0	101.0	0.0	.	Atlas-SNP
RTEL1	51750	hgsc.bcm.edu	37	20	62309673	62309673	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	RTEL1-44	NM_016434	exon12	c.C1011T	p.D337D	TGGAGACGACAGC	.	113.0	37.0	80.0	0.0	.	Atlas-SNP
GRIK1	2897	hgsc.bcm.edu	37	21	31062246	31062246	+	Missense_Mutation	SNP	C	C	T	rs142436130		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	GRIK1-137	NM_175611	exon3	c.G346A	p.V116I	CACTGACGGAGGA	.	114.0	14.0	163.0	0.0	C|1.000;T|0.000	Atlas-SNP
TUBA8	51807	hgsc.bcm.edu	37	22	18609364	18609364	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	TUBA8-90	NM_018943	exon4	c.G619A	p.E207K	GACAACGAAGCCA	.	144.0	123.0	281.0	0.0	.	Atlas-SNP
DGCR8	54487	hgsc.bcm.edu	37	22	20073745	20073745	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	DGCR8-90	NM_001190326	exon2	c.A259G	p.I87V	CTCCTCATAGACC	.	84.0	12.0	111.0	0.0	.	Atlas-SNP
PIWIL3	440822	hgsc.bcm.edu	37	22	25150089	25150089	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	PIWIL3,NS,carcinoma,0	PIWIL3-93	NM_001008496	exon8	c.G869A	p.R290Q	TCTATTCGGAGCA	.	104.0	96.0	114.0	1.0	.	Atlas-SNP
SFI1	9814	hgsc.bcm.edu	37	22	31971289	31971289	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	SFI1-90	NM_014775	exon10	c.G995A	p.R332Q	GGGAGCGGAGGGA	.	119.0	28.0	136.0	0.0	.	Atlas-SNP
PPP6R2	9701	hgsc.bcm.edu	37	22	50845169	50845169	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PPP6R2-92	NM_014678	exon4	c.C279T	p.S93S	GATCAGCGACCGC	.	48.0	18.0	92.0	0.0	.	Atlas-SNP
MPV17	4358	hgsc.bcm.edu	37	2	27535925	27535925	+	Missense_Mutation	SNP	C	C	T	rs140992482		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	MPV17-90	NM_002437	exon3	c.G122A	p.R41Q	AGACCCCGCCTCT	.	175.0	154.0	247.0	1.0	C|1.000;T|0.000	Atlas-SNP
TMEM247	388946	hgsc.bcm.edu	37	2	46707887	46707887	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	.	NM_001145051	exon2	c.A461C	p.E154A	AGCAAGAGGCGGC	.	131.0	24.0	114.0	0.0	.	Atlas-SNP
MSH6	2956	hgsc.bcm.edu	37	2	48026605	48026605	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	MSH6,NS,lymphoid_neoplasm,0	MSH6-3014	NM_000179	exon4	c.C1483T	p.R495X	GAGGCACGATGTA	.	165.0	151.0	258.0	0.0	.	Atlas-SNP
PSME4	23198	hgsc.bcm.edu	37	2	54159045	54159045	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PSME4-275	NM_014614	exon10	c.C1243A	p.L415I	CTTCTAGACTACC	.	165.0	148.0	261.0	2.0	.	Atlas-SNP
DNAH6	1768	hgsc.bcm.edu	37	2	84899458	84899458	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	DNAH6-69	NM_001370	exon40	c.G6462A	p.P2154P	AGCACCGGGAAAC	.	45.0	37.0	51.0	0.0	.	Atlas-SNP
BCL2L11	10018	hgsc.bcm.edu	37	2	111921764	111921764	+	Nonsense_Mutation	SNP	C	C	T	rs138706378	byfrequency;alternate_allele	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	BCL2L11-1083	NM_138621	exon4	c.C553T	p.R185X	ATCTTACGACTGT	.	113.0	99.0	131.0	0.0	C|0.999;G|0.001	Atlas-SNP
NCKAP5	344148	hgsc.bcm.edu	37	2	133541906	133541906	+	Silent	SNP	A	A	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	.	NM_207363	exon14	c.T2478A	p.P826P	AGATGAAGGGAGT	.	116.0	111.0	157.0	1.0	.	Atlas-SNP
DLX1	1745	hgsc.bcm.edu	37	2	172951487	172951487	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	DLX1-90	NM_178120	exon2	c.T419C	p.L140S	TGCAGTTGCAGGC	.	107.0	97.0	149.0	0.0	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	37	2	179592882	179592882	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	TTN-636	NM_001256850	exon65	c.A18718G	p.N6240D	CTACATTTGACAC	.	98.0	92.0	119.0	0.0	.	Atlas-SNP
MFSD6	54842	hgsc.bcm.edu	37	2	191301884	191301884	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	MFSD6-92	NM_017694	exon3	c.G1129A	p.V377I	TTCGGCGTTCTCA	.	159.0	131.0	221.0	0.0	.	Atlas-SNP
TMEM247	388946	hgsc.bcm.edu	37	2	46707883	46707884	+	Frame_Shift_Ins	INS	-	-	GG	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	.	NM_001145051	exon2	c.457_458insGG	p.Q153fs	.	.	142.0	32.0	130.0	0.0	.	Atlas-Indel
SUSD5	26032	hgsc.bcm.edu	37	3	33216542	33216542	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	SUSD5-24	NM_015551	exon4	c.C434T	p.S145L	GGGAACGAAGGCG	.	119.0	103.0	168.0	0.0	.	Atlas-SNP
TRANK1	9881	hgsc.bcm.edu	37	3	36873092	36873092	+	Missense_Mutation	SNP	C	C	T	rs200132397		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	TRANK1-24	NM_014831	exon21	c.G7850A	p.R2617H	AGGCCACGGACTA	.	177.0	161.0	248.0	2.0	.	Atlas-SNP
DLEC1	9940	hgsc.bcm.edu	37	3	38080909	38080909	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	DLEC1-161	NM_007337	exon1	c.C193T	p.R65C	CCCCGCCGCCTCA	.	168.0	156.0	118.0	0.0	.	Atlas-SNP
PTPN23	25930	hgsc.bcm.edu	37	3	47453643	47453643	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PTPN23-227	NM_015466	exon22	c.A4133G	p.Y1378C	CACATTACCTGCA	.	113.0	102.0	139.0	0.0	.	Atlas-SNP
AMT	275	hgsc.bcm.edu	37	3	49459642	49459642	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	AMT-91	NM_000481	exon2	c.G153A	p.A51A	CGCAAACGCCACC	.	128.0	112.0	238.0	1.0	.	Atlas-SNP
SEMA3F	6405	hgsc.bcm.edu	37	3	50211681	50211681	+	Silent	SNP	C	C	T	rs200273983		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	SEMA3F-279	NM_004186	exon5	c.C354T	p.F118F	GAACTTCGTCAGG	.	240.0	210.0	367.0	1.0	C|0.999;T|0.001	Atlas-SNP
DNAH1	25981	hgsc.bcm.edu	37	3	52425313	52425313	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	DNAH1-67	NM_015512	exon62	c.A9860G	p.D3287G	AGCTAGACCCAGC	.	145.0	131.0	253.0	1.0	.	Atlas-SNP
STAB1	23166	hgsc.bcm.edu	37	3	52536666	52536666	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	STAB1-139	NM_015136	exon6	c.G506A	p.G169E	TGCACGGAGTGTG	.	115.0	99.0	145.0	0.0	.	Atlas-SNP
STAB1	23166	hgsc.bcm.edu	37	3	52553340	52553340	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	STAB1,mouth,carcinoma,-1	STAB1-139	NM_015136	exon49	c.G5095A	p.G1699S	GTGAACGGCATCC	.	161.0	152.0	243.0	0.0	.	Atlas-SNP
ITIH1	3697	hgsc.bcm.edu	37	3	52820426	52820426	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ITIH1-93	NM_001166434	exon11	c.C1283T	p.T428I	ACCTCACCATCCA	.	184.0	177.0	300.0	0.0	.	Atlas-SNP
PRICKLE2	166336	hgsc.bcm.edu	37	3	64085464	64085464	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PRICKLE2-95	NM_198859	exon8	c.C1798T	p.R600W	CGCTCCGGAACTG	.	138.0	123.0	228.0	0.0	.	Atlas-SNP
FILIP1L	11259	hgsc.bcm.edu	37	3	99643213	99643213	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	FILIP1L-45	NM_001042459	exon4	c.C466T	p.R156X	GGATTCGTCTGTA	.	95.0	81.0	124.0	0.0	.	Atlas-SNP
MYH15	22989	hgsc.bcm.edu	37	3	108174589	108174589	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	MYH15-73	NM_014981	exon21	c.C2316G	p.I772M	CTTAGTGATTCCA	.	90.0	84.0	122.0	0.0	.	Atlas-SNP
ZBTB20	26137	hgsc.bcm.edu	37	3	114070578	114070578	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ZBTB20-95	NM_001164342	exon4	c.G347A	p.R116H	TGTGCGCGCAGCA	.	166.0	149.0	236.0	0.0	.	Atlas-SNP
SLC12A8	84561	hgsc.bcm.edu	37	3	124854609	124854609	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	SLC12A8-22	NM_001195483	exon5	c.T640A	p.Y214N	GTGAATATCCAAT	.	87.0	79.0	140.0	0.0	.	Atlas-SNP
COL6A5	256076	hgsc.bcm.edu	37	3	130124438	130124438	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	.	NM_153264	exon14	c.C4288T	p.R1430X	GGAGTACGAGGAG	.	159.0	138.0	309.0	1.0	.	Atlas-SNP
PLS1	5357	hgsc.bcm.edu	37	3	142408558	142408558	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PLS1-91	NM_001172312	exon10	c.T1080A	p.N360K	AGGCAATCCTAAA	.	61.0	57.0	90.0	0.0	.	Atlas-SNP
LETM1	3954	hgsc.bcm.edu	37	4	1836604	1836604	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	LETM1-90	NM_012318	exon5	c.G844A	p.A282T	TGGTGGCGCTGCC	.	163.0	71.0	163.0	0.0	.	Atlas-SNP
ANAPC4	29945	hgsc.bcm.edu	37	4	25419944	25419944	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ANAPC4-293	NM_013367	exon29	c.C2367T	p.A789A	TGCTGCCGCTTTA	.	162.0	66.0	104.0	0.0	.	Atlas-SNP
COL25A1	84570	hgsc.bcm.edu	37	4	109810390	109810390	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	COL25A1-92	NM_001256074	exon16	c.G950A	p.R317H	CCTGGACGACCAG	.	100.0	42.0	67.0	0.0	.	Atlas-SNP
LARP7	51574	hgsc.bcm.edu	37	4	113570694	113570694	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	LARP7-93	NM_016648	exon9	c.C1146T	p.S382S	TAGGAGCGAATGG	.	261.0	26.0	175.0	0.0	.	Atlas-SNP
FABP2	2169	hgsc.bcm.edu	37	4	120240719	120240719	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	FABP2-91	NM_000134	exon3	c.G320A	p.R107Q	ATTTCTCGGACAG	.	76.0	29.0	63.0	0.0	.	Atlas-SNP
IRF2	3660	hgsc.bcm.edu	37	4	185340688	185340688	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	IRF2-91	NM_002199	exon3	c.C122T	p.A41V	CTAGCCGCATGCA	.	85.0	35.0	67.0	0.0	.	Atlas-SNP
FAT1	2195	hgsc.bcm.edu	37	4	187629666	187629666	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	FAT1-34	NM_005245	exon2	c.C1316A	p.T439K	CTTGTTGTTACTT	.	186.0	95.0	114.0	0.0	.	Atlas-SNP
SLC12A7	10723	hgsc.bcm.edu	37	5	1089183	1089183	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	SLC12A7-138	NM_006598	exon4	c.G403A	p.V135I	GGATGACGCCCAG	.	267.0	131.0	206.0	1.0	.	Atlas-SNP
SGTB	54557	hgsc.bcm.edu	37	5	65000123	65000123	+	Silent	SNP	T	T	G	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	SGTB-90	NM_019072	exon5	c.A357C	p.A119A	GTAAACTGCATTA	.	86.0	43.0	59.0	0.0	.	Atlas-SNP
GCNT4	51301	hgsc.bcm.edu	37	5	74325230	74325230	+	Silent	SNP	C	C	T	rs148761969	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	GCNT4-93	NM_016591	exon1	c.G633A	p.S211S	AAGGTCCGACAAG	.	137.0	74.0	82.0	0.0	C|0.999;T|0.001	Atlas-SNP
CKMT2	1160	hgsc.bcm.edu	37	5	80548557	80548557	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	CKMT2-90	NM_001825	exon4	c.G196A	p.E66K	ATGGCCGAGTGCC	.	293.0	127.0	239.0	0.0	.	Atlas-SNP
LMNB1	4001	hgsc.bcm.edu	37	5	126154661	126154661	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	LMNB1-226	NM_005573	exon6	c.T987C	p.A329A	GCTTGCTAAAGAA	.	362.0	172.0	257.0	1.0	.	Atlas-SNP
RNF145	153830	hgsc.bcm.edu	37	5	158595954	158595954	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	RNF145-525	NM_001199380	exon8	c.G1138A	p.V380I	AAGCTACGACAAT	.	516.0	222.0	382.0	0.0	.	Atlas-SNP
GABRB2	2561	hgsc.bcm.edu	37	5	160757958	160757958	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	GABRB2-91	NM_021911	exon9	c.C1009T	p.R337C	TTTGGCGTTGGGG	.	209.0	90.0	107.0	0.0	.	Atlas-SNP
PDLIM7	9260	hgsc.bcm.edu	37	5	176916510	176916510	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PDLIM7-153	NM_203352	exon9	c.G651A	p.T217T	CGTGGGCGTGGCC	.	231.0	118.0	97.0	0.0	.	Atlas-SNP
FAM193B	54540	hgsc.bcm.edu	37	5	176951844	176951844	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	.	NM_001190946	exon6	c.G1638A	p.T546T	TTGTAACGTGTGG	.	102.0	40.0	47.0	0.0	.	Atlas-SNP
MAML1	9794	hgsc.bcm.edu	37	5	179193193	179193193	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	MAML1-848	NM_014757	exon2	c.C1182A	p.S394S	GCTGTCCTCTGCC	.	130.0	64.0	80.0	0.0	.	Atlas-SNP
JARID2	3720	hgsc.bcm.edu	37	6	15501341	15501341	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	JARID2-228	NM_004973	exon8	c.C2149T	p.R717W	GAGCACCGGCGGC	.	190.0	176.0	245.0	2.0	.	Atlas-SNP
GPANK1	7918	hgsc.bcm.edu	37	6	31630341	31630341	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	GPANK1-91	NM_001199237	exon4	c.C773T	p.P258L	AAGCCCGGGCTGG	.	76.0	65.0	92.0	0.0	.	Atlas-SNP
SLC35B2	347734	hgsc.bcm.edu	37	6	44222512	44222512	+	Silent	SNP	G	G	A	rs146186426		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	SLC35B2-91	NM_178148	exon4	c.C1230T	p.Y410Y	CCGCGCGTAGACT	.	113.0	103.0	140.0	0.0	G|1.000;A|0.000	Atlas-SNP
BEND3	57673	hgsc.bcm.edu	37	6	107390834	107390834	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	BEND3-71	NM_001080450	exon5	c.C1561T	p.R521W	CCGGCCGCTCGCC	.	28.0	25.0	64.0	0.0	.	Atlas-SNP
TULP4	56995	hgsc.bcm.edu	37	6	158900783	158900783	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	TULP4-91	NM_001007466	exon7	c.C1027T	p.R343C	TGCCAGCGCCCCA	.	56.0	52.0	106.0	0.0	.	Atlas-SNP
HEATR2	54919	hgsc.bcm.edu	37	7	780485	780485	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	HEATR2-69	NM_017802	exon3	c.C810T	p.G270G	GGTGGGCGGCTGG	.	105.0	80.0	147.0	0.0	.	Atlas-SNP
SDK1	221935	hgsc.bcm.edu	37	7	4169611	4169611	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	SDK1-138	NM_152744	exon27	c.G4011A	p.S1337S	GCAGTCGGCCCTG	.	92.0	86.0	116.0	0.0	.	Atlas-SNP
HECW1	23072	hgsc.bcm.edu	37	7	43351432	43351432	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	HECW1-669	NM_015052	exon4	c.G98A	p.R33H	GCCGACGCCGGTG	.	84.0	8.0	97.0	0.0	.	Atlas-SNP
PHKG1	5260	hgsc.bcm.edu	37	7	56149873	56149873	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PHKG1-424	NM_001258459	exon8	c.C717T	p.Y239Y	TTTCCCGTAGCCC	.	73.0	63.0	119.0	0.0	.	Atlas-SNP
PLXNA4	91584	hgsc.bcm.edu	37	7	131913155	131913155	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PLXNA4-91	NM_020911	exon6	c.C1678T	p.R560W	TCAGCCGGACACA	.	129.0	115.0	219.0	1.0	.	Atlas-SNP
MLL3	58508	hgsc.bcm.edu	37	7	151864452	151864452	+	Missense_Mutation	SNP	G	G	A	rs145072739		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	MLL3-1398	NM_170606	exon42	c.C9529T	p.R3177C	GCTTACGCTGTGA	.	31.0	30.0	35.0	0.0	G|1.000;A|0.000	Atlas-SNP
SGK223	0	hgsc.bcm.edu	37	8	8185743	8185743	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	.	NM_001080826	exon4	c.C2549T	p.S850L	GTTTCCGAGTGGC	.	142.0	58.0	133.0	0.0	.	Atlas-SNP
SOX7	83595	hgsc.bcm.edu	37	8	10583913	10583913	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	SOX7-522	NM_031439	exon2	c.G502A	p.G168S	CAGTGCCGGGGGA	.	75.0	39.0	13.0	0.0	.	Atlas-SNP
DLC1	10395	hgsc.bcm.edu	37	8	12950218	12950218	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	DLC1-657	NM_182643	exon13	c.G3643A	p.V1215I	CTTTTACGGCTGC	.	226.0	112.0	203.0	0.0	.	Atlas-SNP
SH2D4A	63898	hgsc.bcm.edu	37	8	19221709	19221709	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	SH2D4A-90	NM_001174160	exon6	c.G698A	p.R233H	CCTTGCGTGTTCC	.	121.0	60.0	85.0	0.0	.	Atlas-SNP
UBE2V2	7336	hgsc.bcm.edu	37	8	48955657	48955657	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	UBE2V2-659	NM_003350	exon2	c.C81T	p.G27G	AGTAGGCGACGGT	.	191.0	13.0	148.0	0.0	.	Atlas-SNP
PREX2	80243	hgsc.bcm.edu	37	8	68939483	68939483	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PREX2-390	NM_024870	exon5	c.G468T	p.K156N	ACGGAAGAACACA	.	205.0	96.0	143.0	0.0	.	Atlas-SNP
C8orf31	286122	hgsc.bcm.edu	37	8	144126154	144126154	+	Missense_Mutation	SNP	G	G	A	rs74447754	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	C8orf31-91	NM_173687	exon4	c.G275A	p.R92Q	GGGCACGAGACCA	.	152.0	74.0	127.0	0.0	G|0.990;A|0.010	Atlas-SNP
EPPK1	83481	hgsc.bcm.edu	37	8	144940488	144940488	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	EPPK1-25	NM_031308	exon1	c.G6934A	p.D2312N	AGGGGTCGGTGTA	.	452.0	36.0	229.0	0.0	.	Atlas-SNP
PLEC	5339	hgsc.bcm.edu	37	8	144994967	144994967	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PLEC-141	NM_201381	exon32	c.C8926T	p.R2976X	CGTCTCGCACAGA	.	164.0	82.0	83.0	0.0	.	Atlas-SNP
LRRC14	9684	hgsc.bcm.edu	37	8	145745151	145745151	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	LRRC14-90	NM_001272036	exon3	c.G42A	p.Q14Q	GCTGCAGTGCCAG	.	198.0	105.0	184.0	0.0	.	Atlas-SNP
WASH1	100287171	hgsc.bcm.edu	37	9	14858	14858	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	.	NM_182905	exon11	c.G1347C	p.P449P	CGGTGGCGGCAAA	.	366.0	63.0	250.0	0.0	.	Atlas-SNP
FBXO10	26267	hgsc.bcm.edu	37	9	37516027	37516027	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	FBXO10-637	NM_012166	exon10	c.G2570A	p.R857H	TTGGCACGGCCCC	.	122.0	109.0	161.0	0.0	.	Atlas-SNP
SPATA31E1	286234	hgsc.bcm.edu	37	9	90503505	90503505	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	.	NM_178828	exon4	c.G4103A	p.R1368H	AAGAACGTAGCAG	.	113.0	100.0	155.0	0.0	.	Atlas-SNP
GABBR2	9568	hgsc.bcm.edu	37	9	101258725	101258725	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	GABBR2-518	NM_005458	exon4	c.C702T	p.N234N	GGGATCGTTGGAG	.	105.0	98.0	154.0	1.0	.	Atlas-SNP
C9orf172	389813	hgsc.bcm.edu	37	9	139739046	139739046	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	.	NM_001080482	exon1	c.C180T	p.D60D	GCTGGACGGGCCG	.	34.0	30.0	17.0	0.0	.	Atlas-SNP
MXRA5	25878	hgsc.bcm.edu	37	X	3228791	3228791	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	MXRA5-136	NM_015419	exon7	c.G7453A	p.V2485I	GCAGAACCACACC	.	558.0	314.0	398.0	2.0	.	Atlas-SNP
CDKL5	6792	hgsc.bcm.edu	37	X	18525233	18525233	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	CDKL5-838	NM_003159	exon2	c.T17G	p.I6S	CTAACATTGGTAA	.	277.0	134.0	201.0	0.0	.	Atlas-SNP
NYX	60506	hgsc.bcm.edu	37	X	41333840	41333840	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	NYX-108	NM_022567	exon2	c.C1134T	p.F378F	GACCTTCGGGCGC	.	210.0	113.0	65.0	0.0	.	Atlas-SNP
TSPYL2	64061	hgsc.bcm.edu	37	X	53112257	53112257	+	Missense_Mutation	SNP	C	C	T	rs192279149	by1000genomes;alternate_allele	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	TSPYL2-130	NM_022117	exon1	c.C577T	p.R193W	CGGCGGCGGAGGA	.	481.0	230.0	385.0	1.0	C|0.999;A|0.001	Atlas-SNP
TRO	7216	hgsc.bcm.edu	37	X	54951477	54951477	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	TRO-131	NM_001271184	exon5	c.A270G	p.E90E	CATTGAACGAGCA	.	672.0	302.0	598.0	2.0	.	Atlas-SNP
TCEAL2	140597	hgsc.bcm.edu	37	X	101382400	101382400	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	TCEAL2-130	NM_080390	exon3	c.G598T	p.D200Y	TTACAGGACCCCT	.	233.0	99.0	106.0	0.0	.	Atlas-SNP
COL4A5	1287	hgsc.bcm.edu	37	X	107812000	107812000	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	COL4A5-133	NM_000495	exon6	c.C333T	p.G111G	GCCAGGCCACGAT	.	388.0	194.0	212.0	0.0	.	Atlas-SNP
RBMXL3	139804	hgsc.bcm.edu	37	X	114425196	114425196	+	Missense_Mutation	SNP	G	G	A	rs12399211		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	.	NM_001145346	exon1	c.G1192A	p.D398N	TCGCCCGACGCCC	.	423.0	266.0	55.0	0.0	G|0.483;A|0.517	Atlas-SNP
RBMXL3	139804	hgsc.bcm.edu	37	X	114425210	114425210	+	Silent	SNP	G	G	A	rs12399213		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	.	NM_001145346	exon1	c.G1206A	p.G402G	CAGCGGGGGCCGC	.	367.0	157.0	71.0	0.0	G|0.607;A|0.393	Atlas-SNP
BCORL1	63035	hgsc.bcm.edu	37	X	129190051	129190051	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	BCORL1-294	NM_021946	exon12	c.C5076T	p.Y1692Y	GCGGTACGAGCCA	.	199.0	82.0	121.0	0.0	.	Atlas-SNP
FLNA	2316	hgsc.bcm.edu	37	X	153588004	153588004	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	FLNA-599	NM_001110556	exon24	c.C3990T	p.S1330S	GTCCACGGAGTGC	.	133.0	71.0	85.0	0.0	.	Atlas-SNP
