Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Algorithm
OLAH	55301	hgsc.bcm.edu	37	10	15103749	15103749	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	OLAH-68	NM_018324	exon5	c.G349C	p.E117Q	GGAAGAGAAAGCA	.	150.0	35.0	144.0	0.0	.	Atlas-SNP
FRMPD2	143162	hgsc.bcm.edu	37	10	49440201	49440201	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	FRMPD2-153	NM_001018071	exon10	c.C1125T	p.A375A	GAGGTTGGCAAAG	.	138.0	47.0	124.0	0.0	.	Atlas-SNP
ANK3	288	hgsc.bcm.edu	37	10	61835910	61835910	+	Missense_Mutation	SNP	T	T	A	rs201650334	alternate_allele	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	ANK3-107	NM_020987	exon37	c.A4729T	p.M1577L	AAGACATTGTCCG	.	340.0	72.0	255.0	0.0	.	Atlas-SNP
HSPA14	51182	hgsc.bcm.edu	37	10	14909858	14909859	+	Frame_Shift_Del	DEL	TA	TA	-	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	TA	TA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	HSPA14-291	NM_016299	exon12	c.1329_1330del	p.443_444del	.	.	157.0	60.0	120.0	0.0	.	Atlas-Indel
OR4C11	219429	hgsc.bcm.edu	37	11	55371204	55371204	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	OR4C11-69	NM_001004700	exon1	c.T646C	p.Y216H	CAATATATGAAAT	.	95.0	35.0	96.0	0.0	.	Atlas-SNP
RAB6A	5870	hgsc.bcm.edu	37	11	73441848	73441848	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	RAB6A-227	NM_002869	exon2	c.A91G	p.T31A	ATCTGGTGATCAA	.	228.0	63.0	226.0	0.0	.	Atlas-SNP
C12orf57	113246	hgsc.bcm.edu	37	12	7053766	7053766	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	C12orf57-90	NM_138425	exon2	c.G180T	p.Q60H	CACGCAGATCCAG	.	358.0	93.0	248.0	0.0	.	Atlas-SNP
PIK3C2G	5288	hgsc.bcm.edu	37	12	18491453	18491453	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	PIK3C2G-1312	NM_004570	exon9	c.C1366T	p.L456L	AATGAACTAAGTC	.	139.0	29.0	192.0	0.0	.	Atlas-SNP
ATF1	466	hgsc.bcm.edu	37	12	51207830	51207830	+	Silent	SNP	T	T	C	rs186674535	alternate_allele	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	ATF1-685	NM_005171	exon5	c.T366C	p.S122S	GGCAAGTCCAGGC	.	302.0	75.0	189.0	0.0	T|0.999;G|0.000	Atlas-SNP
OR6C2	341416	hgsc.bcm.edu	37	12	55846356	55846356	+	Missense_Mutation	SNP	G	G	A	rs187562104		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	OR6C2-70	NM_054105	exon1	c.G359A	p.R120H	ATGACCGCTATGT	.	103.0	19.0	85.0	0.0	G|0.999;A|0.001	Atlas-SNP
NABP2	79035	hgsc.bcm.edu	37	12	56622965	56622965	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	.	NM_024068	exon7	c.G604A	p.G202S	AGTAACGGCAAAG	.	155.0	20.0	102.0	0.0	.	Atlas-SNP
AVPR1A	552	hgsc.bcm.edu	37	12	63544072	63544072	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	AVPR1A-946	NM_000706	exon1	c.G545T	p.S182I	GGCGTGCTCAGCA	.	282.0	59.0	161.0	0.0	.	Atlas-SNP
GAS6	2621	hgsc.bcm.edu	37	13	114529971	114529971	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	GAS6-650	NM_000820	exon12	c.A1475G	p.Y492C	TTACTGTAGTCCA	.	125.0	56.0	149.0	0.0	.	Atlas-SNP
ABCD4	5826	hgsc.bcm.edu	37	14	74763089	74763089	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	ABCD4-292	NM_005050	exon5	c.G489T	p.K163N	GATGAGCTTGCTG	.	78.0	23.0	77.0	0.0	.	Atlas-SNP
RORA	6095	hgsc.bcm.edu	37	15	60797800	60797800	+	Silent	SNP	C	C	T	rs199818399		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	RORA-290	NM_134262	exon5	c.G684A	p.S228S	CAGATGCGATTTA	.	99.0	31.0	109.0	0.0	.	Atlas-SNP
IGDCC4	57722	hgsc.bcm.edu	37	15	65703500	65703500	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	IGDCC4-93	NM_020962	exon2	c.G279T	p.L93L	CAGCCACAGGGAA	.	195.0	62.0	157.0	0.0	.	Atlas-SNP
SLC28A1	9154	hgsc.bcm.edu	37	15	85438269	85438269	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	SLC28A1-93	NM_201651	exon6	c.C376T	p.R126C	GGCCACCGCCTGC	.	151.0	40.0	122.0	0.0	.	Atlas-SNP
MSLN	10232	hgsc.bcm.edu	37	16	818658	818658	+	Silent	SNP	G	G	A	rs201197109		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	MSLN-91	NM_001177355	exon18	c.G1794A	p.S598S	CCTCTCGGGGACG	.	63.0	19.0	43.0	0.0	G|0.999;A|0.001	Atlas-SNP
MYO15A	51168	hgsc.bcm.edu	37	17	18062646	18062646	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	MYO15A-97	NM_016239	exon53	c.A9214G	p.T3072A	ATGGCCACCGACA	.	83.0	33.0	101.0	0.0	.	Atlas-SNP
LASP1	3927	hgsc.bcm.edu	37	17	37070576	37070576	+	Splice_Site	SNP	A	A	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	LASP1-522	NM_006148	exon5	c.358-2A>C	.	CCTTGCAGATAAA	.	385.0	90.0	259.0	0.0	.	Atlas-SNP
ARL4D	379	hgsc.bcm.edu	37	17	41477602	41477602	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	ARL4D-228	NM_001661	exon2	c.T502C	p.C168R	CAAGGCTGCAGCG	.	68.0	24.0	60.0	0.0	.	Atlas-SNP
EVPL	2125	hgsc.bcm.edu	37	17	74004100	74004100	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	EVPL-93	NM_001988	exon22	c.C5186T	p.S1729L	GGCCCCGAGGTGG	.	119.0	33.0	81.0	0.0	.	Atlas-SNP
FLJ45079	0	hgsc.bcm.edu	37	17	75879202	75879203	+	RNA	INS	-	-	CCCA	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	.	.	.	.	.	.	.	62.0	13.0	57.0	0.0	.	Atlas-Indel
ME2	4200	hgsc.bcm.edu	37	18	48434497	48434498	+	Frame_Shift_Ins	INS	-	-	AGAG	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	ME2-90	NM_001168335	exon3	c.173_174insAGAG	p.I58fs	.	.	118.0	25.0	96.0	0.0	.	Atlas-Indel
NACC1	112939	hgsc.bcm.edu	37	19	13246265	13246265	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	NACC1-90	NM_052876	exon2	c.C244G	p.L82V	CAGATCCTCAGCT	.	344.0	51.0	202.0	0.0	.	Atlas-SNP
NUMBL	9253	hgsc.bcm.edu	37	19	41175846	41175846	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	NUMBL-637	NM_004756	exon9	c.C1116T	p.A372A	AGCACTGGCAAAA	.	175.0	34.0	103.0	0.0	.	Atlas-SNP
PSG9	5678	hgsc.bcm.edu	37	19	43772123	43772123	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	PSG9-92	NM_002784	exon2	c.G243A	p.S81S	TATATACGATATA	.	167.0	28.0	161.0	0.0	.	Atlas-SNP
PNMAL2	57469	hgsc.bcm.edu	37	19	46997223	46997223	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	PNMAL2-1	NM_020709	exon1	c.C1500T	p.N500N	CCCCTCGTTGGAC	.	83.0	11.0	76.0	0.0	.	Atlas-SNP
TMEM143	55260	hgsc.bcm.edu	37	19	48866617	48866617	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	TMEM143-90	NM_018273	exon2	c.C195G	p.D65E	GGCCCAGTCGCGG	.	90.0	19.0	66.0	0.0	.	Atlas-SNP
NAPSA	9476	hgsc.bcm.edu	37	19	50865552	50865552	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	NAPSA-90	NM_004851	exon2	c.C102G	p.V34V	AGGTTGGACTCGA	.	82.0	17.0	67.0	0.0	.	Atlas-SNP
PRAM1	84106	hgsc.bcm.edu	37	19	8555234	8555236	+	In_Frame_Del	DEL	CAT	CAT	-	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	CAT	CAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	.	NM_032152	exon9	c.1962_1964del	p.654_655del	.	.	185.0	35.0	126.0	0.0	.	Atlas-Indel
ZNF616	90317	hgsc.bcm.edu	37	19	52620097	52620098	+	Frame_Shift_Del	DEL	TT	TT	-	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	ZNF616-90	NM_178523	exon4	c.320_321del	p.107_107del	.	.	195.0	37.0	136.0	0.0	.	Atlas-Indel
SLC2A5	6518	hgsc.bcm.edu	37	1	9118302	9118302	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	SLC2A5-517	NM_001135585	exon2	c.C41T	p.T14M	ACAAGCGTCAGCC	.	242.0	92.0	321.0	1.0	.	Atlas-SNP
UBR4	23352	hgsc.bcm.edu	37	1	19455563	19455563	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	UBR4-612	NM_020765	exon61	c.A8912T	p.H2971L	ACCATGTGCAGCC	.	88.0	30.0	131.0	0.0	.	Atlas-SNP
NTNG1	22854	hgsc.bcm.edu	37	1	107691233	107691233	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	NTNG1-140	NM_001113228	exon2	c.C18A	p.F6L	AAGATTCCTGTCG	.	119.0	55.0	145.0	0.0	.	Atlas-SNP
ADAMTSL4	54507	hgsc.bcm.edu	37	1	150532560	150532560	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	ADAMTSL4-92	NM_019032	exon19	c.C3113T	p.P1038L	GCTCTCCACATTG	.	262.0	47.0	137.0	0.0	.	Atlas-SNP
SPTA1	6708	hgsc.bcm.edu	37	1	158632609	158632609	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	SPTA1-142	NM_003126	exon17	c.G2347C	p.A783P	GGGTGGCCAGTGG	.	209.0	44.0	150.0	0.0	.	Atlas-SNP
PTPN7	5778	hgsc.bcm.edu	37	1	202122941	202122941	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	PTPN7-227	NM_080588	exon6	c.C746A	p.T249K	TCTTCTGTGGGCC	.	144.0	22.0	100.0	0.0	.	Atlas-SNP
KCNH1	3756	hgsc.bcm.edu	37	1	210857405	210857405	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	KCNH1-94	NM_002238	exon11	c.A2107C	p.I703L	GCAAGATCAGGGG	.	45.0	10.0	22.0	0.0	.	Atlas-SNP
TRIM11	81559	hgsc.bcm.edu	37	1	228582932	228582932	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	TRIM11-658	NM_145214	exon6	c.A881G	p.D294G	GCGGTGTCCGGGT	.	43.0	9.0	25.0	0.0	.	Atlas-SNP
PRDX1	5052	hgsc.bcm.edu	37	1	45980288	45980290	+	In_Frame_Del	DEL	ATC	ATC	-	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	ATC	ATC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	PRDX1-514	NM_002574	exon5	c.404_406del	p.135_136del	.	.	105.0	35.0	163.0	0.0	.	Atlas-Indel
SLC4A11	83959	hgsc.bcm.edu	37	20	3214626	3214626	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	SLC4A11-91	NM_001174090	exon6	c.C675T	p.I225I	CCCTTGGATGGTA	.	100.0	36.0	92.0	0.0	.	Atlas-SNP
HNF4A	3172	hgsc.bcm.edu	37	20	43057001	43057001	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	HNF4A-227	NM_001258355	exon10	c.C1135A	p.H379N	CATGCCCACCACC	.	119.0	48.0	89.0	0.0	.	Atlas-SNP
OGFR	11054	hgsc.bcm.edu	37	20	61444569	61444569	+	Silent	SNP	A	A	G	rs3204348	byfrequency;by1000genomes	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	OGFR-68	NM_007346	exon7	c.A1602G	p.P534P	CGAGCCAGCCGAG	.	70.0	13.0	25.0	0.0	A|0.979;G|0.021	Atlas-SNP
ITSN2	50618	hgsc.bcm.edu	37	2	24522788	24522788	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	ITSN2-539	NM_006277	exon12	c.A1334G	p.E445G	CGTCTTTCTATGT	.	75.0	19.0	55.0	0.0	.	Atlas-SNP
CRIM1	51232	hgsc.bcm.edu	37	2	36739479	36739479	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	CRIM1-118	NM_016441	exon10	c.G1722T	p.K574N	CAGTAAGATCTGC	.	290.0	82.0	205.0	0.0	.	Atlas-SNP
CCDC142	84865	hgsc.bcm.edu	37	2	74701812	74701812	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	CCDC142-68	NM_032779	exon9	c.G2093C	p.S698T	AGTGTGCTTTGCA	.	117.0	19.0	89.0	0.0	.	Atlas-SNP
DDX18	8886	hgsc.bcm.edu	37	2	118575133	118575133	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	DDX18-290	NM_006773	exon2	c.G199T	p.E67X	TTATCAGAAACTC	.	155.0	31.0	135.0	0.0	.	Atlas-SNP
CNTNAP5	129684	hgsc.bcm.edu	37	2	125285031	125285031	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	CNTNAP5-524	NM_130773	exon10	c.C1644A	p.D548E	CAAAGACAGGTAA	.	97.0	23.0	108.0	0.0	.	Atlas-SNP
ARHGAP15	55843	hgsc.bcm.edu	37	2	144245049	144245049	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	ARHGAP15-653	NM_018460	exon9	c.A811C	p.K271Q	CAAGAAAAAGGAC	.	48.0	14.0	35.0	0.0	.	Atlas-SNP
FMNL2	114793	hgsc.bcm.edu	37	2	153476031	153476031	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	FMNL2-516	NM_052905	exon15	c.G1636A	p.G546S	CAAAATGGTCCAG	.	52.0	10.0	59.0	0.0	.	Atlas-SNP
CYP20A1	57404	hgsc.bcm.edu	37	2	204143326	204143326	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	CYP20A1-90	NM_177538	exon7	c.A710G	p.N237S	TAAGGAACATCAT	.	342.0	62.0	313.0	0.0	.	Atlas-SNP
VWC2L	402117	hgsc.bcm.edu	37	2	215279234	215279234	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	.	NM_001080500	exon2	c.G317T	p.C106F	GATGCTGTCCTGA	.	112.0	33.0	80.0	0.0	.	Atlas-SNP
TRIP12	9320	hgsc.bcm.edu	37	2	230656613	230656613	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	TRIP12-572	NM_004238	exon28	c.G4159A	p.A1387T	TACCAGCTCTGCC	.	255.0	126.0	161.0	0.0	.	Atlas-SNP
KIF1A	547	hgsc.bcm.edu	37	2	241696843	241696843	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	KIF1A-91	NM_001244008	exon27	c.G2751T	p.E917D	CTCATCCTCCTCC	.	182.0	12.0	111.0	0.0	.	Atlas-SNP
OTOF	9381	hgsc.bcm.edu	37	2	26684681	26684683	+	In_Frame_Del	DEL	TCT	TCT	-	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	TCT	TCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	OTOF-135	NM_194322	exon25	c.3345_3347del	p.1115_1116del	.	.	337.0	75.0	222.0	0.0	.	Atlas-Indel
GOLGA4	2803	hgsc.bcm.edu	37	3	37396592	37396592	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	GOLGA4-93	NM_001172713	exon22	c.A6622C	p.T2208P	TTGTAGACCATGG	.	75.0	13.0	58.0	0.0	.	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	37	3	41266104	41266104	+	Missense_Mutation	SNP	G	G	T	rs28931589	bycluster	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	CTNNB1,gallbladder,other,0	CTNNB1-24361	NM_001098209	exon3	c.G101T	p.G34V	ACTCTGGAATCCA	.	218.0	74.0	205.0	1.0	G|1.000;T|0.000	Atlas-SNP
COPB2	9276	hgsc.bcm.edu	37	3	139077931	139077931	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	COPB2-92	NM_004766	exon19	c.T2393A	p.F798Y	CCAGGGAACAGGT	.	105.0	21.0	85.0	0.0	.	Atlas-SNP
ZBTB38	253461	hgsc.bcm.edu	37	3	141162487	141162487	+	Silent	SNP	A	A	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	ZBTB38-25	NM_001080412	exon8	c.A1257T	p.G419G	AAATGGAGGTTCA	.	171.0	48.0	138.0	0.0	.	Atlas-SNP
KIAA1407	57577	hgsc.bcm.edu	37	3	113697118	113697120	+	In_Frame_Del	DEL	TCT	TCT	-	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	TCT	TCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	KIAA1407-92	NM_020817	exon16	c.2520_2522del	p.840_841del	.	.	99.0	21.0	73.0	0.0	.	Atlas-Indel
MCF2L2	23101	hgsc.bcm.edu	37	3	183035998	183035999	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	MCF2L2-293	NM_015078	exon7	c.611_612insG	p.E204fs	.	.	199.0	36.0	142.0	0.0	.	Atlas-Indel
CCNL1	57018	hgsc.bcm.edu	37	3	156868131	156868134	+	Frame_Shift_Del	DEL	AACA	AACA	-	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	AACA	AACA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	CCNL1-659	NM_020307	exon6	c.712_715del	p.238_239del	.	.	202.0	32.0	172.0	0.0	.	Pindel
ARAP2	116984	hgsc.bcm.edu	37	4	36130245	36130245	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	ARAP2-93	NM_015230	exon21	c.G3550C	p.D1184H	TCACATCTTCAAG	.	209.0	72.0	222.0	0.0	.	Atlas-SNP
LPHN3	23284	hgsc.bcm.edu	37	4	62936396	62936396	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	LPHN3-508	NM_015236	exon23	c.G4180A	p.V1394I	GAGAGTGTTACCA	.	72.0	31.0	114.0	0.0	.	Atlas-SNP
ENAM	10117	hgsc.bcm.edu	37	4	71510144	71510144	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	ENAM-93	NM_031889	exon9	c.G3001T	p.V1001F	GAACAAGTTTTTG	.	320.0	78.0	296.0	0.0	.	Atlas-SNP
ANKRD50	57182	hgsc.bcm.edu	37	4	125592202	125592202	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	ANKRD50-90	NM_001167882	exon3	c.T1693C	p.C565R	TATCACAATGATC	.	98.0	21.0	95.0	0.0	.	Atlas-SNP
ZNF131	7690	hgsc.bcm.edu	37	5	43161463	43161463	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	ZNF131-90	NM_003432	exon5	c.G484C	p.E162Q	TCTGCAGAATCAG	.	243.0	67.0	214.0	0.0	.	Atlas-SNP
ISL1	3670	hgsc.bcm.edu	37	5	50680462	50680462	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	ISL1-515	NM_002202	exon2	c.A116C	p.H39P	AATGGCATGCGGC	.	259.0	43.0	233.0	0.0	.	Atlas-SNP
PCDHA7	56141	hgsc.bcm.edu	37	5	140215777	140215777	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	PCDHA7-94	NM_031852	exon1	c.C1809T	p.Y603Y	AGGCTACAACGCG	.	561.0	140.0	294.0	0.0	.	Atlas-SNP
PCDHA2	56146	hgsc.bcm.edu	37	5	140389355	140389355	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	PCDHA2-94	NM_018905	exon4	c.A2680G	p.I894V	CCTGCAATCATCT	.	156.0	42.0	136.0	0.0	.	Atlas-SNP
ADRA1B	147	hgsc.bcm.edu	37	5	159344848	159344848	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	ADRA1B-522	NM_000679	exon1	c.C936T	p.I312I	CTTCATCGCTCTA	.	139.0	31.0	92.0	0.0	.	Atlas-SNP
DOCK2	1794	hgsc.bcm.edu	37	5	169097591	169097591	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	DOCK2-97	NM_004946	exon4	c.G214C	p.E72Q	ACAGTTGAGAAAA	.	97.0	19.0	68.0	0.0	.	Atlas-SNP
PRPF4B	8899	hgsc.bcm.edu	37	6	4037635	4037635	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	PRPF4B-1308	NM_003913	exon3	c.C1243T	p.R415X	AGAACACGACCTC	.	74.0	26.0	82.0	0.0	.	Atlas-SNP
HIST1H3E	8353	hgsc.bcm.edu	37	6	26225400	26225400	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	HIST1H3E-68	NM_003532	exon1	c.G18C	p.Q6H	TAAGCAGACGGCT	.	310.0	88.0	300.0	0.0	.	Atlas-SNP
PKHD1	5314	hgsc.bcm.edu	37	6	51774212	51774212	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	PKHD1-603	NM_170724	exon40	c.G6551T	p.G2184V	CTGGCTCCCATAT	.	177.0	52.0	165.0	0.0	.	Atlas-SNP
DST	667	hgsc.bcm.edu	37	6	56336987	56336987	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	DST-523	NM_015548	exon75	c.C14159T	p.S4720F	GACCCAGAGGGAT	.	182.0	56.0	178.0	0.0	.	Atlas-SNP
GABRR2	2570	hgsc.bcm.edu	37	6	89978901	89978901	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	GABRR2-68	NM_002043	exon4	c.C341G	p.A114G	GAGAAAGCTAGCC	.	154.0	41.0	161.0	0.0	.	Atlas-SNP
RNF217	154214	hgsc.bcm.edu	37	6	125404012	125404012	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	RNF217-68	NM_152553	exon9	c.T797G	p.F266C	CTAGGTTTATTTG	.	71.0	18.0	59.0	0.0	.	Atlas-SNP
BCLAF1	9774	hgsc.bcm.edu	37	6	136582461	136582461	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	BCLAF1-228	NM_001077441	exon12	c.A2180T	p.D727V	TCTTCATCTTCAA	.	125.0	15.0	90.0	0.0	.	Atlas-SNP
MTHFD1L	25902	hgsc.bcm.edu	37	6	151281517	151281517	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	MTHFD1L-292	NM_001242767	exon18	c.A1913T	p.D638V	CCAGTGACAAAAG	.	226.0	66.0	194.0	0.0	.	Atlas-SNP
SCAF8	22828	hgsc.bcm.edu	37	6	155126521	155126522	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	SCAF8-91	NM_014892	exon9	c.881_882del	p.294_294del	.	.	90.0	25.0	90.0	0.0	.	Atlas-Indel
THSD7A	221981	hgsc.bcm.edu	37	7	11485690	11485690	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	THSD7A-71	NM_015204	exon13	c.A3062G	p.H1021R	TTACCATGGCTGT	.	213.0	42.0	159.0	0.0	.	Atlas-SNP
BZW2	28969	hgsc.bcm.edu	37	7	16734601	16734601	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	BZW2-92	NM_014038	exon8	c.G794A	p.R265H	AGGAGCGTCTTTC	.	63.0	15.0	51.0	0.0	.	Atlas-SNP
SP8	221833	hgsc.bcm.edu	37	7	20824953	20824953	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	SP8-91	NM_198956	exon3	c.C429G	p.G143G	GCCGCCGCCCCCG	.	29.0	16.0	11.0	0.0	.	Atlas-SNP
SP4	6671	hgsc.bcm.edu	37	7	21469550	21469550	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	SP4-95	NM_003112	exon3	c.C767T	p.T256I	TAACAACCCTACC	.	261.0	60.0	193.0	0.0	.	Atlas-SNP
KLHL7	55975	hgsc.bcm.edu	37	7	23163401	23163401	+	Silent	SNP	G	G	A	rs150640353		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	KLHL7-90	NM_001031710	exon2	c.G126A	p.T42T	GAAAACGTTGTGT	.	98.0	18.0	103.0	0.0	G|1.000;A|0.000	Atlas-SNP
PKD1L1	168507	hgsc.bcm.edu	37	7	47897371	47897371	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	PKD1L1-145	NM_138295	exon28	c.T4422C	p.H1474H	GTTGTAATGAAGA	.	127.0	26.0	81.0	0.0	.	Atlas-SNP
AASS	10157	hgsc.bcm.edu	37	7	121769438	121769438	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	AASS-92	NM_005763	exon3	c.T364C	p.L122L	CCAACAAGCCCAT	.	24.0	8.0	34.0	0.0	.	Atlas-SNP
CSMD1	64478	hgsc.bcm.edu	37	8	2857496	2857496	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	CSMD1-86	NM_033225	exon53	c.A8187G	p.Q2729Q	AGGCGTTTGTCCA	.	129.0	21.0	137.0	0.0	.	Atlas-SNP
CSMD3	114788	hgsc.bcm.edu	37	8	113323220	113323220	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	CSMD3-1132	NM_198123	exon50	c.C7872A	p.V2624V	GGCAGGGACTGGC	.	127.0	30.0	88.0	0.0	.	Atlas-SNP
SQLE	6713	hgsc.bcm.edu	37	8	126019726	126019726	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	SQLE-523	NM_003129	exon4	c.C819G	p.I273M	AGATATCAAGGTG	.	120.0	28.0	87.0	0.0	.	Atlas-SNP
PLEC	5339	hgsc.bcm.edu	37	8	144998369	144998369	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	PLEC-141	NM_201381	exon31	c.A5632T	p.K1878X	GCCCCTTCTGCCG	.	110.0	40.0	29.0	0.0	.	Atlas-SNP
MROH1	727957	hgsc.bcm.edu	37	8	145247210	145247210	+	Splice_Site	SNP	A	A	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	.	NM_001099281	exon9	c.856-2A>C	.	CGGAGCAGAGCCT	.	46.0	14.0	48.0	0.0	.	Atlas-SNP
LSM1	27257	hgsc.bcm.edu	37	8	38021296	38021298	+	In_Frame_Del	DEL	TTC	TTC	-	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	TTC	TTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	LSM1-90	NM_014462	exon4	c.293_295del	p.98_99del	.	.	109.0	26.0	73.0	0.0	.	Atlas-Indel
ARID3C	138715	hgsc.bcm.edu	37	9	34627865	34627865	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	ARID3C-91	NM_001017363	exon1	c.G147T	p.G49G	CTCAGCCCCAACA	.	92.0	51.0	71.0	0.0	.	Atlas-SNP
TMEM2	23670	hgsc.bcm.edu	37	9	74347358	74347358	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	TMEM2-92	NM_013390	exon7	c.A1472G	p.N491S	ACAATATTCCGGG	.	100.0	28.0	88.0	0.0	.	Atlas-SNP
C9orf57	138240	hgsc.bcm.edu	37	9	74674243	74674243	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	.	NM_001128618	exon2	c.G71A	p.R24K	ATCCTTCTCATTC	.	91.0	18.0	82.0	0.0	.	Atlas-SNP
KIF27	55582	hgsc.bcm.edu	37	9	86518378	86518378	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	KIF27-523	NM_017576	exon4	c.A1055C	p.E352A	TCTGACTCGGGGC	.	32.0	6.0	35.0	0.0	.	Atlas-SNP
DFNB31	25861	hgsc.bcm.edu	37	9	117169063	117169063	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	DFNB31-95	NM_015404	exon9	c.G1808C	p.G603A	TCTCTCCCCAGCT	.	151.0	30.0	105.0	0.0	.	Atlas-SNP
TNC	3371	hgsc.bcm.edu	37	9	117792645	117792645	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	TNC-517	NM_002160	exon24	c.C5960T	p.A1987V	AGCATTGCTTGGG	.	169.0	46.0	113.0	0.0	.	Atlas-SNP
GLE1	2733	hgsc.bcm.edu	37	9	131271329	131271329	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	GLE1-22	NM_001003722	exon2	c.A274G	p.S92G	GACGCAAGCTCTG	.	335.0	53.0	202.0	0.0	.	Atlas-SNP
PCYT1B	9468	hgsc.bcm.edu	37	X	24593415	24593415	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	PCYT1B-130	NM_001163264	exon7	c.G675C	p.Q225H	TTGGTTCTGGAAA	.	97.0	22.0	103.0	0.0	.	Atlas-SNP
MAGEB6	158809	hgsc.bcm.edu	37	X	26212978	26212978	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	MAGEB6-133	NM_173523	exon2	c.G1015C	p.D339H	GTGCAAGATAAGT	.	456.0	102.0	367.0	0.0	.	Atlas-SNP
GPR82	27197	hgsc.bcm.edu	37	X	41587121	41587121	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	GPR82-110	NM_080817	exon3	c.G842T	p.C281F	ATAACTGTCAGCA	.	164.0	31.0	164.0	0.0	.	Atlas-SNP
SMC1A	8243	hgsc.bcm.edu	37	X	53410124	53410124	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	SMC1A-232	NM_006306	exon20	c.G3024A	p.Q1008Q	CAGCTTCTGCTGC	.	113.0	33.0	95.0	0.0	.	Atlas-SNP
DACH2	117154	hgsc.bcm.edu	37	X	85950071	85950071	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	DACH2-136	NM_001139515	exon5	c.G319T	p.A107S	CCATTTGCTGCAC	.	328.0	79.0	341.0	0.0	.	Atlas-SNP
IRS4	8471	hgsc.bcm.edu	37	X	107979446	107979446	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	IRS4-623	NM_003604	exon1	c.C129A	p.L43L	CCCAATGAGTGCG	.	111.0	23.0	115.0	0.0	.	Atlas-SNP
SAT1	6303	hgsc.bcm.edu	37	X	23803871	23803873	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	CTT	CTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	SAT1-554	NM_002970	exon6	c.413_415del	p.138_139del	.	.	218.0	55.0	254.0	0.0	.	Atlas-Indel
