Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Algorithm
C10orf113	387638	hgsc.bcm.edu	37	10	21435342	21435342	+	Missense_Mutation	SNP	A	A	T	rs200339723		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	.	C10orf113-93	NM_001010896	exon1	c.T96A	p.S32R	ACAAACACTCTCT	.	80.0	5.0	81.0	0.0	.	Atlas-SNP
SMC3	9126	hgsc.bcm.edu	37	10	112350315	112350315	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	.	SMC3-92	NM_005445	exon16	c.T1655G	p.V552G	TGGAAGTCACTGC	.	188.0	80.0	202.0	0.0	.	Atlas-SNP
SF3B2	10992	hgsc.bcm.edu	37	11	65826803	65826803	+	Silent	SNP	C	C	T	rs143148362	byfrequency	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	.	SF3B2-92	NM_006842	exon11	c.C1314T	p.D438D	TGATGACGAGCAG	.	145.0	118.0	213.0	1.0	C|0.999;T|0.001	Atlas-SNP
MEN1	4221	hgsc.bcm.edu	37	11	64573212	64573216	+	Frame_Shift_Del	DEL	GATCT	GATCT	-	novel		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	GATCT	GATCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	.	MEN1-3017	NM_130801	exon8	c.1092_1096del	p.364_366del	.	.	88.0	61.0	209.0	0.0	.	Atlas-Indel
PUS1	80324	hgsc.bcm.edu	37	12	132426223	132426223	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	.	PUS1-577	NM_025215	exon5	c.G931A	p.E311K	GCCCCTGAGAGCG	.	236.0	109.0	206.0	0.0	.	Atlas-SNP
POSTN	10631	hgsc.bcm.edu	37	13	38148740	38148740	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	.	POSTN-516	NM_006475	exon17	c.A2058C	p.E686D	ACTGCCTTCAATC	.	33.0	20.0	39.0	0.0	.	Atlas-SNP
ARHGEF40	55701	hgsc.bcm.edu	37	14	21544607	21544607	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	.	ARHGEF40-228	NM_018071	exon6	c.C1828T	p.Q610X	TTGAGCCAACTTC	.	79.0	33.0	72.0	0.0	.	Atlas-SNP
BZRAP1	9256	hgsc.bcm.edu	37	17	56399729	56399729	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	.	BZRAP1-229	NM_004758	exon10	c.G1362A	p.E454E	TTCATGCTCCACC	.	95.0	21.0	48.0	0.0	.	Atlas-SNP
STRADA	92335	hgsc.bcm.edu	37	17	61787883	61787883	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	.	STRADA-547	NM_001165969	exon6	c.C462T	p.L154L	GTAGTCGAGGGCC	.	309.0	79.0	209.0	0.0	.	Atlas-SNP
CEACAM20	125931	hgsc.bcm.edu	37	19	45028106	45028106	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	.	CEACAM20-67	NM_001102597	exon3	c.C385T	p.Q129X	CCCGCTGGACAAT	.	466.0	192.0	386.0	0.0	.	Atlas-SNP
WDR78	79819	hgsc.bcm.edu	37	1	67370954	67370954	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	.	WDR78-92	NM_207014	exon2	c.C275A	p.S92Y	GTTTTGGACACAG	.	59.0	4.0	128.0	0.0	.	Atlas-SNP
NR5A2	2494	hgsc.bcm.edu	37	1	200008804	200008804	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	.	NR5A2-227	NM_205860	exon2	c.G83C	p.C28S	CGGACCGACACGG	.	178.0	19.0	115.0	0.0	.	Atlas-SNP
RHOU	58480	hgsc.bcm.edu	37	1	228879456	228879456	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	.	RHOU-659	NM_021205	exon3	c.C746A	p.S249Y	CCAAGTCCTGGTG	.	192.0	81.0	181.0	0.0	.	Atlas-SNP
NEFH	4744	hgsc.bcm.edu	37	22	29885594	29885594	+	Silent	SNP	A	A	T	rs79235463	byfrequency	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	.	NEFH-90	NM_021076	exon4	c.A1965T	p.P655P	GTCCCCAGAGAAG	.	245.0	57.0	257.0	0.0	A|0.500;T|0.500	Atlas-SNP
NBAS	51594	hgsc.bcm.edu	37	2	15607887	15607887	+	Missense_Mutation	SNP	T	T	C	rs186337430		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	.	NBAS-94	NM_015909	exon18	c.A1919G	p.Y640C	TCTTCATAGGAGA	.	112.0	59.0	135.0	0.0	T|0.999;C|0.000	Atlas-SNP
LYPD1	116372	hgsc.bcm.edu	37	2	133425989	133425989	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	.	LYPD1-90	NM_144586	exon2	c.G174A	p.V58V	CTCCATCACTTCT	.	97.0	11.0	114.0	0.0	.	Atlas-SNP
ZEB2	9839	hgsc.bcm.edu	37	2	145187558	145187558	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	.	ZEB2-297	NM_001171653	exon3	c.G109T	p.E37X	CTGTTTCAGAACC	.	104.0	13.0	109.0	0.0	.	Atlas-SNP
PRR21	643905	hgsc.bcm.edu	37	2	240982362	240982362	+	Missense_Mutation	SNP	G	G	A	rs151246209	byfrequency	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	.	PRR21-70	NM_001080835	exon1	c.C38T	p.P13L	ATGAAGGGCCGTG	.	157.0	9.0	157.0	0.0	G|0.991;A|0.009	Atlas-SNP
PRR21	643905	hgsc.bcm.edu	37	2	240982368	240982369	+	Frame_Shift_Ins	INS	-	-	GATGAAGAGCCGTG	novel		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	.	PRR21-70	NM_001080835	exon1	c.32_33insCACGGCTCTTCATC	p.P11fs	.	.	154.0	36.0	161.0	0.0	.	Atlas-Indel
IP6K2	51447	hgsc.bcm.edu	37	3	48726082	48726082	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	.	IP6K2-265	NM_016291	exon6	c.A905G	p.E302G	AGGAGTTCACGGC	.	253.0	40.0	249.0	0.0	.	Atlas-SNP
DHX36	170506	hgsc.bcm.edu	37	3	153994065	153994065	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	.	DHX36-226	NM_001114397	exon25	c.C2880A	p.S960S	GTCTCTGGATTTA	.	100.0	5.0	134.0	0.0	.	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	37	3	41266117	41266139	+	Frame_Shift_Del	DEL	TGCCACTACCACAGCTCCTTCTC	TGCCACTACCACAGCTCCTTCTC	-	novel		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	TGCCACTACCACAGCTCCTTCTC	TGCCACTACCACAGCTCCTTCTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	CTNNB1,NS,carcinoma,0	CTNNB1-24361	NM_001904	exon3	c.113_135del	p.38_45del	.	.	165.0	34.0	196.0	0.0	.	Pindel
ODAM	54959	hgsc.bcm.edu	37	4	71068537	71068537	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	.	ODAM-134	NM_017855	exon9	c.G713C	p.G238A	GTGCAGGAGTTTT	.	215.0	85.0	223.0	0.0	.	Atlas-SNP
SCUBE3	222663	hgsc.bcm.edu	37	6	35207577	35207577	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	.	SCUBE3-91	NM_152753	exon8	c.G878A	p.R293H	TTTGCCGCAACAC	.	146.0	65.0	132.0	0.0	.	Atlas-SNP
SMIM8	57150	hgsc.bcm.edu	37	6	88046858	88046858	+	Missense_Mutation	SNP	G	G	T	rs141864670	alternate_allele	TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	.	.	NM_001042493	exon3	c.G109T	p.V37L	CGTGCTGTGAATC	.	40.0	5.0	43.0	0.0	G|1.000;A|0.000	Atlas-SNP
CYP3A7	1551	hgsc.bcm.edu	37	7	99305480	99305480	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	.	CYP3A7-91	NM_000765	exon12	c.C1371G	p.V457V	GACTCTGACTAGA	.	590.0	36.0	257.0	0.0	.	Atlas-SNP
ESYT2	57488	hgsc.bcm.edu	37	7	158534581	158534581	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	.	ESYT2-92	NM_020728	exon17	c.C1882A	p.H628N	CGAGATGGAGCAC	.	57.0	7.0	106.0	0.0	.	Atlas-SNP
RSBN1L	222194	hgsc.bcm.edu	37	7	77326230	77326231	+	In_Frame_Ins	INS	-	-	GCCGCT	novel		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	.	RSBN1L-91	NM_198467	exon1	c.444_445insGCCGCT	p.A148delinsAAA	.	.	49.0	14.0	14.0	0.0	.	Atlas-Indel
DEC1	50514	hgsc.bcm.edu	37	9	118162667	118162667	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K6-01A-11D-A29I-10	TCGA-OR-A5K6-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	788cf29b-3505-4a07-b8f4-9c4caee33ad9	4da48703-c30a-4b4a-b8ae-9256618f3300	.	DEC1-69	NM_017418	exon6	c.G43T	p.V15L	AGCATTGTGCCAG	.	107.0	20.0	106.0	0.0	.	Atlas-SNP
