Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Algorithm
ATF7IP	55729	hgsc.bcm.edu	37	12	14610191	14610191	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	ATF7IP-252	NM_018179	exon8	c.A2120C	p.E707A	TAAGCGAGAGTGC	.	115.0	62.0	83.0	0.0	.	Atlas-SNP
SNURF	8926	hgsc.bcm.edu	37	15	25207273	25207273	+	Missense_Mutation	SNP	C	C	A	rs426541	byfrequency;alternate_allele	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	SNURF-90	NM_005678	exon2	c.C27A	p.H9Q	CTTACACCTGAGA	.	112.0	17.0	109.0	0.0	C|0.990;T|0.010	Atlas-SNP
SETD1A	9739	hgsc.bcm.edu	37	16	30976945	30976945	+	Silent	SNP	C	C	T	rs146323096		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	SETD1A-93	NM_014712	exon8	c.C1743T	p.D581D	TGGAGACGACATG	.	75.0	38.0	71.0	0.0	C|1.000;T|0.000	Atlas-SNP
BCAR1	9564	hgsc.bcm.edu	37	16	75269596	75269596	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	BCAR1-1145	NM_001170716	exon5	c.G1255C	p.D419H	CACCATCAGCCAC	.	207.0	96.0	81.0	0.0	.	Atlas-SNP
MINK1	50488	hgsc.bcm.edu	37	17	4798460	4798460	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	MINK1-943	NM_001024937	exon25	c.G2948A	p.R983Q	ACACCCGGGCCCA	.	98.0	83.0	121.0	0.0	.	Atlas-SNP
CRHR1	1394	hgsc.bcm.edu	37	17	43907881	43907881	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	CRHR1-522	NM_001256299	exon9	c.G129A	p.V43V	CATCGTGCTCACC	.	89.0	77.0	114.0	0.0	.	Atlas-SNP
PGS1	9489	hgsc.bcm.edu	37	17	76394346	76394346	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	PGS1-90	NM_024419	exon4	c.A425G	p.E142G	GCCTGGAAAGTAC	.	31.0	25.0	54.0	0.0	.	Atlas-SNP
SLC44A2	57153	hgsc.bcm.edu	37	19	10745635	10745674	+	In_Frame_Del	DEL	CTTTGCCCTTTGCAGTGATCATTCTGAGTATCCTTGAAGT	CTTTGCCCTTTGCAGTGATCATTCTGAGTATCCTTGAAGT	-	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	CTTTGCCCTTTGCAGTGATCATTCTGAGTATCCTTGAAGT	CTTTGCCCTTTGCAGTGATCATTCTGAGTATCCTTGAAGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	SLC44A2-91	NM_020428	exon12	c.956_979del	p.319_327del	.	.	80.0	28.0	54.0	0.0	.	Atlas-Indel
NR1H2	7376	hgsc.bcm.edu	37	19	50881858	50881864	+	Frame_Shift_Del	DEL	TGTGGGG	TGTGGGG	-	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	TGTGGGG	TGTGGGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	NR1H2-186	NM_007121	exon6	c.551_557del	p.184_186del	.	.	74.0	17.0	59.0	0.0	.	Atlas-Indel
NR1H2	7376	hgsc.bcm.edu	37	19	50881832	50881866	+	Frame_Shift_Del	DEL	GAGTCACAGTCACAGTCGCAGTCACCTGTGGGGCC	GAGTCACAGTCACAGTCGCAGTCACCTGTGGGGCC	-	rs57821899	alternate_allele	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	GAGTCACAGTCACAGTCGCAGTCACCTGTGGGGCC	GAGTCACAGTCACAGTCGCAGTCACCTGTGGGGCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	NR1H2-186	NM_007121	exon6	c.525_559del	p.175_187del	.	.	88.0	14.0	64.0	0.0	.	Pindel
HHIPL2	79802	hgsc.bcm.edu	37	1	222721210	222721210	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	HHIPL2-69	NM_024746	exon1	c.G177T	p.E59D	GCAAAACTCAAGG	.	53.0	43.0	72.0	0.0	.	Atlas-SNP
LCE1F	353137	hgsc.bcm.edu	37	1	152749003	152749008	+	In_Frame_Del	DEL	TGGCTC	TGGCTC	-	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	TGGCTC	TGGCTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	LCE1F-68	NM_178354	exon1	c.155_160del	p.52_54del	.	.	66.0	12.0	56.0	0.0	.	Atlas-Indel
TTC7A	57217	hgsc.bcm.edu	37	2	47184029	47184029	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	TTC7A-136	NM_020458	exon3	c.G400A	p.E134K	TACGTGGAGGGCT	.	144.0	8.0	219.0	0.0	.	Atlas-SNP
GPR156	165829	hgsc.bcm.edu	37	3	119962580	119962580	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	GPR156-92	NM_001168271	exon2	c.C140A	p.P47H	AGGACAGGAGATA	.	47.0	4.0	79.0	0.0	.	Atlas-SNP
OTOP1	133060	hgsc.bcm.edu	37	4	4228456	4228456	+	Silent	SNP	G	G	T	rs73191872	bycluster;by1000genomes	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	OTOP1-92	NM_177998	exon1	c.C136A	p.R46R	CGCCCCGCCGGGG	.	80.0	15.0	7.0	0.0	.	Atlas-SNP
NAF1	92345	hgsc.bcm.edu	37	4	164050186	164050186	+	Missense_Mutation	SNP	C	C	T	rs200516616		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	NAF1-70	NM_138386	exon8	c.G1348A	p.G450S	CCCAACCCATGTT	.	6.0	4.0	7.0	0.0	.	Atlas-SNP
CMYA5	202333	hgsc.bcm.edu	37	5	79029401	79029401	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	CMYA5-77	NM_153610	exon2	c.G4813C	p.D1605H	CAGGGAGACTTCC	.	135.0	42.0	51.0	0.0	.	Atlas-SNP
DAXX	1616	hgsc.bcm.edu	37	6	33288624	33288624	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	DAXX-731	NM_001254717	exon2	c.C703T	p.Q235X	TGAGCTGGAGCTG	.	78.0	63.0	121.0	0.0	.	Atlas-SNP
CDK19	23097	hgsc.bcm.edu	37	6	110953362	110953362	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	CDK19-548	NM_015076	exon6	c.G517C	p.D173H	CCATGTCAGCTAA	.	14.0	14.0	28.0	0.0	.	Atlas-SNP
LAMA4	3910	hgsc.bcm.edu	37	6	112455803	112455803	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	LAMA4-140	NM_001105207	exon26	c.C3402A	p.I1134I	GTAAATGATTGAG	.	26.0	20.0	27.0	0.0	.	Atlas-SNP
UTRN	7402	hgsc.bcm.edu	37	6	145093104	145093104	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	UTRN-95	NM_007124	exon58	c.G8557T	p.A2853S	TCCCTTGGTAAGT	.	37.0	4.0	13.0	0.0	.	Atlas-SNP
SP8	221833	hgsc.bcm.edu	37	7	20824941	20824943	+	In_Frame_Del	DEL	GCC	GCC	-	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	GCC	GCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	SP8-91	NM_182700	exon2	c.494_496del	p.165_166del	.	.	44.0	24.0	9.0	0.0	.	Atlas-Indel
RP1	6101	hgsc.bcm.edu	37	8	55540356	55540356	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	RP1-102	NM_006269	exon4	c.T3914C	p.L1305P	GTTCACTTACTGA	.	116.0	17.0	118.0	0.0	.	Atlas-SNP
SMARCA2	6595	hgsc.bcm.edu	37	9	2077741	2077741	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	SMARCA2-653	NM_139045	exon14	c.G2149T	p.A717S	CAGTCTGCCCTCC	.	246.0	100.0	150.0	0.0	.	Atlas-SNP
MLLT3	4300	hgsc.bcm.edu	37	9	20414349	20414349	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	MLLT3-660	NM_004529	exon5	c.C495T	p.S165S	ACTGCTGCTGCTG	.	42.0	9.0	30.0	0.0	.	Atlas-SNP
MLLT3	4300	hgsc.bcm.edu	37	9	20414341	20414343	+	In_Frame_Del	DEL	CTA	CTA	-	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	CTA	CTA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	MLLT3-660	NM_004529	exon5	c.502_504del	p.168_168del	.	.	46.0	17.0	34.0	0.0	.	Atlas-Indel
CDR1	1038	hgsc.bcm.edu	37	X	139865766	139865766	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	CDR1-130	NM_004065	exon1	c.A766G	p.T256A	TCAGTGTCTTCCA	.	158.0	148.0	115.0	0.0	.	Atlas-SNP
