Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Algorithm
PRKCQ	5588	hgsc.bcm.edu	37	10	6533734	6533734	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	PRKCQ-1380	NM_001242413	exon8	c.T701A	p.F234Y	ACTTTAAATCTGT	.	164.0	32.0	110.0	0.0	.	Atlas-SNP
ECHDC3	79746	hgsc.bcm.edu	37	10	11805518	11805518	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ECHDC3-90	NM_024693	exon5	c.C887G	p.P296R	GAAAACCTGTCTG	.	16.0	8.0	10.0	0.0	.	Atlas-SNP
ERCC6	2074	hgsc.bcm.edu	37	10	50714007	50714007	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ERCC6-1153	NM_000124	exon6	c.G1449T	p.M483I	ATCGTCCTCCAGC	.	41.0	13.0	48.0	0.0	.	Atlas-SNP
NDUFB8	4714	hgsc.bcm.edu	37	10	102289594	102289594	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	NDUFB8-90	NM_005004	exon1	c.G15T	p.R5S	CCCGGCCCTGGCC	.	188.0	118.0	90.0	0.0	.	Atlas-SNP
C10orf90	118611	hgsc.bcm.edu	37	10	128193343	128193343	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	C10orf90-92	NM_001004298	exon3	c.C426T	p.I142I	GGCCGTGATGGTG	.	15.0	5.0	14.0	0.0	.	Atlas-SNP
MUC5B	727897	hgsc.bcm.edu	37	11	1253980	1253980	+	Missense_Mutation	SNP	A	A	G	rs202127660		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	.	NM_002458	exon17	c.A2045G	p.D682G	TCAGCGACTGGAG	.	143.0	15.0	32.0	0.0	.	Atlas-SNP
KRTAP5-5	439915	hgsc.bcm.edu	37	11	1651229	1651229	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	KRTAP5-5-23	NM_001001480	exon1	c.G159A	p.A53A	CTGTGCGGGCTGT	.	115.0	12.0	60.0	0.0	.	Atlas-SNP
MRGPRE	116534	hgsc.bcm.edu	37	11	3250000	3250000	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	MRGPRE-136	NM_001039165	exon2	c.C30T	p.H10H	CCCCACGTGCTGT	.	60.0	55.0	41.0	0.0	.	Atlas-SNP
OR51A4	401666	hgsc.bcm.edu	37	11	4967624	4967624	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	OR51A4-71	NM_001005329	exon1	c.T707G	p.L236R	GCCTTAAGCTGCT	.	718.0	333.0	872.0	0.0	.	Atlas-SNP
MICALCL	84953	hgsc.bcm.edu	37	11	12315183	12315183	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	MICALCL-91	NM_032867	exon3	c.G205C	p.A69P	AGGCGAGCCGTAG	.	109.0	55.0	119.0	0.0	.	Atlas-SNP
NCAM1	4684	hgsc.bcm.edu	37	11	113103921	113103921	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	NCAM1-23	NM_001242607	exon15	c.C1653G	p.A551A	CACAGCCCAGGTG	.	285.0	123.0	222.0	0.0	.	Atlas-SNP
FKBP4	2288	hgsc.bcm.edu	37	12	2910398	2910398	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	FKBP4-226	NM_002014	exon9	c.A1148G	p.Y383C	AGCTCTACCCCAA	.	147.0	89.0	133.0	0.0	.	Atlas-SNP
CSAD	51380	hgsc.bcm.edu	37	12	53555170	53555170	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	CSAD-91	NM_001244705	exon11	c.G706A	p.A236T	GCACAGCACCCTG	.	356.0	99.0	213.0	0.0	.	Atlas-SNP
ESYT1	23344	hgsc.bcm.edu	37	12	56522161	56522161	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ESYT1-95	NM_015292	exon1	c.C58G	p.P20A	TCTGCTCCCTCCG	.	76.0	17.0	13.0	0.0	.	Atlas-SNP
BAZ2A	11176	hgsc.bcm.edu	37	12	57005765	57005765	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	BAZ2A-22	NM_013449	exon6	c.C1407T	p.V469V	TGGAGAGACCACT	.	359.0	44.0	108.0	0.0	.	Atlas-SNP
ATP8A2	51761	hgsc.bcm.edu	37	13	26138139	26138139	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ATP8A2-138	NM_016529	exon16	c.C1443A	p.P481P	TGACCCCAGGCTG	.	92.0	36.0	78.0	0.0	.	Atlas-SNP
DCLK1	9201	hgsc.bcm.edu	37	13	36410236	36410236	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	DCLK1-826	NM_001195416	exon4	c.A242G	p.E81G	TATCGTTCTGTTA	.	128.0	47.0	158.0	0.0	.	Atlas-SNP
EXD2	55218	hgsc.bcm.edu	37	14	69704629	69704629	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	.	NM_001193363	exon8	c.G1630C	p.A544P	CAAGAGGCTGCCA	.	255.0	68.0	182.0	0.0	.	Atlas-SNP
RTL1	388015	hgsc.bcm.edu	37	14	101348688	101348688	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	RTL1-46	NM_001134888	exon1	c.T2438A	p.I813N	AATTCGATGAAGT	.	138.0	34.0	116.0	0.0	.	Atlas-SNP
RTL1	388015	hgsc.bcm.edu	37	14	101349080	101349080	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	RTL1-46	NM_001134888	exon1	c.C2046T	p.T682T	ATCTTCGGTGCGG	.	233.0	70.0	153.0	0.0	.	Atlas-SNP
RYR3	6263	hgsc.bcm.edu	37	15	34064256	34064256	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	RYR3-520	NM_001243996	exon63	c.A8952T	p.K2984N	GATTAAAGGCGTT	.	74.0	68.0	169.0	1.0	.	Atlas-SNP
FANCI	55215	hgsc.bcm.edu	37	15	89790933	89790933	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	FANCI-92	NM_018193	exon2	c.G55A	p.E19K	CTGCAAGAATTTC	.	65.0	25.0	88.0	0.0	.	Atlas-SNP
KIF7	374654	hgsc.bcm.edu	37	15	90176983	90176983	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	KIF7-523	NM_198525	exon12	c.T2526C	p.L842L	CTCGCGAAGCCGC	.	85.0	36.0	29.0	0.0	.	Atlas-SNP
MGRN1	23295	hgsc.bcm.edu	37	16	4731691	4731691	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	MGRN1-92	NM_001142291	exon12	c.C1206T	p.S402S	CCTGTCCCAGGCC	.	121.0	73.0	58.0	0.0	.	Atlas-SNP
PRKCB	5579	hgsc.bcm.edu	37	16	23847557	23847557	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	PRKCB-1530	NM_212535	exon1	c.G61T	p.A21S	CGCTTCGCCCGCA	.	345.0	134.0	73.0	0.0	.	Atlas-SNP
CACNG3	10368	hgsc.bcm.edu	37	16	24268165	24268165	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	CACNG3-90	NM_006539	exon1	c.G90A	p.T30T	GGGCACGGACTAC	.	244.0	62.0	200.0	0.0	.	Atlas-SNP
ITGAM	3684	hgsc.bcm.edu	37	16	31288327	31288327	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ITGAM-226	NM_000632	exon11	c.C1170T	p.I390I	CTTCATCAACATG	.	161.0	14.0	127.0	0.0	.	Atlas-SNP
CNTNAP4	85445	hgsc.bcm.edu	37	16	76555137	76555137	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	CNTNAP4-70	NM_138994	exon15	c.G2247C	p.K749N	TTTTAAGACAACA	.	35.0	7.0	32.0	0.0	.	Atlas-SNP
CNTD1	124817	hgsc.bcm.edu	37	17	40957779	40957779	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	CNTD1-90	NM_173478	exon4	c.C457G	p.L153V	CAGGCTCTAGGCT	.	60.0	37.0	87.0	0.0	.	Atlas-SNP
AARSD1	80755	hgsc.bcm.edu	37	17	41105767	41105767	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	AARSD1-90	NM_001261434	exon10	c.A982C	p.I328L	CAATGATATTCAT	.	151.0	16.0	126.0	0.0	.	Atlas-SNP
EPN3	55040	hgsc.bcm.edu	37	17	48614027	48614027	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	EPN3-91	NM_017957	exon2	c.G110T	p.S37I	CCCCTAGTTCGCT	.	130.0	109.0	129.0	1.0	.	Atlas-SNP
COLEC12	81035	hgsc.bcm.edu	37	18	346782	346782	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	COLEC12-92	NM_130386	exon5	c.C840T	p.N280N	GGTGTCGTTGTTG	.	65.0	20.0	67.0	0.0	.	Atlas-SNP
ABCA7	10347	hgsc.bcm.edu	37	19	1046951	1046951	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ABCA7-98	NM_019112	exon14	c.C1773T	p.L591L	GGTGCTCTGGCTA	.	634.0	89.0	11.0	0.0	.	Atlas-SNP
RFX2	5990	hgsc.bcm.edu	37	19	6047473	6047473	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	RFX2-156	NM_000635	exon2	c.C35T	p.A12V	ACGGACGCTGGCG	.	217.0	65.0	18.0	0.0	.	Atlas-SNP
RPS28	6234	hgsc.bcm.edu	37	19	8386554	8386554	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	RPS28-46	NM_001031	exon2	c.G54C	p.L18L	GGTCCTGGGCAGG	.	80.0	33.0	59.0	0.0	.	Atlas-SNP
ZNF846	162993	hgsc.bcm.edu	37	19	9869036	9869036	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ZNF846-23	NM_001077624	exon6	c.A717G	p.S239S	AAGGTGTGAGGAA	.	90.0	28.0	72.0	0.0	.	Atlas-SNP
ZNF653	115950	hgsc.bcm.edu	37	19	11594864	11594864	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ZNF653-90	NM_138783	exon8	c.C1663T	p.P555S	GCAGGGGGGTCTC	.	269.0	115.0	45.0	0.0	.	Atlas-SNP
AKAP8L	26993	hgsc.bcm.edu	37	19	15508345	15508345	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	AKAP8L-1	NM_014371	exon11	c.A1391C	p.Q464P	AGATCCTGGTCTC	.	580.0	45.0	133.0	0.0	.	Atlas-SNP
OR10H5	284433	hgsc.bcm.edu	37	19	15905273	15905273	+	Missense_Mutation	SNP	C	C	T	rs145808850	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	OR10H5-69	NM_001004466	exon1	c.C415T	p.R139W	AGCCTGCGGGGCT	.	1865.0	215.0	342.0	0.0	A|0.001;C|0.999;T|0.000	Atlas-SNP
UPF1	5976	hgsc.bcm.edu	37	19	18943028	18943028	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	UPF1-91	NM_002911	exon1	c.G10C	p.E4Q	AGCGTGGAGGCGT	.	181.0	113.0	69.0	0.0	.	Atlas-SNP
ZNF607	84775	hgsc.bcm.edu	37	19	38189550	38189550	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ZNF607-90	NM_032689	exon5	c.A1482G	p.I494M	GCGATGTATAGTG	.	133.0	35.0	95.0	0.0	.	Atlas-SNP
SAE1	10055	hgsc.bcm.edu	37	19	47673134	47673134	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	SAE1-227	NM_005500	exon6	c.A687G	p.A229A	GAAAGCAAAGGCT	.	164.0	37.0	106.0	0.0	.	Atlas-SNP
LRRC4B	94030	hgsc.bcm.edu	37	19	51022585	51022585	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	LRRC4B-205	NM_001080457	exon3	c.G385A	p.A129T	TGAAGGCGCCCAC	.	225.0	58.0	84.0	0.0	.	Atlas-SNP
TMEM86B	255043	hgsc.bcm.edu	37	19	55739581	55739581	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	TMEM86B-90	NM_173804	exon2	c.C276G	p.I92M	CGGCCAGATGAGG	.	196.0	49.0	101.0	0.0	.	Atlas-SNP
ZFP28	140612	hgsc.bcm.edu	37	19	57065768	57065768	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ZFP28-91	NM_020828	exon8	c.T1614C	p.C538C	TGTATGTCACAAA	.	56.0	8.0	61.0	0.0	.	Atlas-SNP
GNB1	2782	hgsc.bcm.edu	37	1	1720546	1720546	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	GNB1-227	NM_002074	exon10	c.G862T	p.G288W	CGTACCCAGCAAG	.	196.0	100.0	197.0	1.0	.	Atlas-SNP
GNB1	2782	hgsc.bcm.edu	37	1	1720547	1720547	+	Silent	SNP	A	A	C	rs151315046	byfrequency;alternate_allele	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	GNB1-227	NM_002074	exon10	c.T861G	p.A287A	GTACCCAGCAAGG	.	196.0	101.0	196.0	0.0	A|0.999;G|0.001	Atlas-SNP
CSMD2	114784	hgsc.bcm.edu	37	1	34099087	34099087	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	CSMD2-103	NM_052896	exon32	c.T5015C	p.V1672A	ACCTCCACCACGT	.	180.0	76.0	153.0	0.0	.	Atlas-SNP
KIF2C	11004	hgsc.bcm.edu	37	1	45227628	45227628	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	KIF2C-228	NM_006845	exon17	c.C1724T	p.T575I	AATATACTTTAAA	.	153.0	61.0	170.0	0.0	.	Atlas-SNP
CYP4A22	284541	hgsc.bcm.edu	37	1	47611785	47611785	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	CYP4A22-139	NM_001010969	exon11	c.C1324A	p.Q442K	TCTGCTCAACACA	.	286.0	36.0	270.0	0.0	.	Atlas-SNP
HMGCS2	3158	hgsc.bcm.edu	37	1	120295286	120295286	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	HMGCS2-92	NM_001166107	exon7	c.G1180C	p.D394H	ACTTGTCCAGGGG	.	178.0	24.0	198.0	0.0	.	Atlas-SNP
CCT3	7203	hgsc.bcm.edu	37	1	156303393	156303393	+	Silent	SNP	A	A	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	CCT3-92	NM_001008800	exon3	c.T135A	p.I45I	CCGGCTAATTTCG	.	85.0	26.0	50.0	0.0	.	Atlas-SNP
OLFML2B	25903	hgsc.bcm.edu	37	1	161954657	161954657	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	OLFML2B-69	NM_015441	exon7	c.G1588A	p.V530I	TGGTTACGTAAAT	.	394.0	88.0	298.0	0.0	.	Atlas-SNP
SELL	6402	hgsc.bcm.edu	37	1	169672445	169672445	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	SELL-90	NM_000655	exon6	c.C942G	p.T314T	ACAAATGGTTTTC	.	269.0	61.0	144.0	0.0	.	Atlas-SNP
CEP350	9857	hgsc.bcm.edu	37	1	179983496	179983496	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	CEP350-26	NM_014810	exon10	c.G1908C	p.Q636H	GAAGCAGAAGGAA	.	228.0	49.0	139.0	0.0	.	Atlas-SNP
PTGS2	5743	hgsc.bcm.edu	37	1	186646810	186646810	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	PTGS2-227	NM_000963	exon5	c.C610T	p.P204S	AAGCTGGCCCTCG	.	189.0	59.0	82.0	0.0	.	Atlas-SNP
PTPRC	5788	hgsc.bcm.edu	37	1	198711467	198711467	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	PTPRC-295	NM_080921	exon22	c.C2185A	p.R729R	CTAAGGCGACAGA	.	351.0	76.0	232.0	0.0	.	Atlas-SNP
DTL	51514	hgsc.bcm.edu	37	1	212245552	212245552	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	DTL-22	NM_016448	exon11	c.G1032A	p.W344X	CATATGGAAGGTA	.	173.0	46.0	122.0	0.0	.	Atlas-SNP
OR2T33	391195	hgsc.bcm.edu	37	1	248437020	248437020	+	Missense_Mutation	SNP	C	C	T	rs138653777		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	OR2T33-114	NM_001004695	exon1	c.G97A	p.V33I	TCAAAACGATACT	.	1014.0	374.0	633.0	2.0	C|1.000;T|0.000	Atlas-SNP
ITCH	83737	hgsc.bcm.edu	37	20	33080396	33080396	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ITCH-659	NM_001257137	exon24	c.C2533G	p.L845V	GCTGATCTCATGG	.	100.0	34.0	82.0	0.0	.	Atlas-SNP
PTPRT	11122	hgsc.bcm.edu	37	20	40713387	40713387	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	PTPRT-664	NM_133170	exon30	c.C4128T	p.V1376V	TCGTCGGACCACT	.	348.0	95.0	219.0	0.0	.	Atlas-SNP
KRTAP11-1	337880	hgsc.bcm.edu	37	21	32253737	32253737	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	KRTAP11-1-91	NM_175858	exon1	c.G107T	p.C36F	CCCAGGCAGTCAG	.	353.0	82.0	185.0	0.0	.	Atlas-SNP
HUNK	30811	hgsc.bcm.edu	37	21	33371313	33371313	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	HUNK-334	NM_014586	exon11	c.C1961G	p.P654R	GGAGCCCCAATTG	.	39.0	11.0	43.0	0.0	.	Atlas-SNP
KCNJ6	3763	hgsc.bcm.edu	37	21	38997475	38997475	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	KCNJ6-91	NM_002240	exon4	c.G1258T	p.E420X	TGGATTCATTCTC	.	70.0	5.0	58.0	0.0	.	Atlas-SNP
KRTAP10-9	386676	hgsc.bcm.edu	37	21	46047395	46047395	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	.	NM_198690	exon1	c.G307A	p.V103I	GTGCCCGTCTGCT	.	509.0	133.0	113.0	0.0	.	Atlas-SNP
MN1	4330	hgsc.bcm.edu	37	22	28192787	28192787	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	MN1-993	NM_002430	exon1	c.G3745A	p.E1249K	CCTTCTCCCAGGG	.	176.0	71.0	85.0	0.0	.	Atlas-SNP
OSBP2	23762	hgsc.bcm.edu	37	22	31137254	31137254	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	OSBP2-114	NM_030758	exon2	c.A751T	p.S251C	GCCAGGAGCTACC	.	116.0	53.0	89.0	0.0	.	Atlas-SNP
UPK3A	7380	hgsc.bcm.edu	37	22	45681905	45681905	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	UPK3A-90	NM_006953	exon2	c.C136A	p.L46I	AAGCCTCTCTGCA	.	208.0	103.0	188.0	0.0	.	Atlas-SNP
RRM2	6241	hgsc.bcm.edu	37	2	10263878	10263878	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	RRM2-227	NM_001165931	exon4	c.G514A	p.D172N	TCCAAGGACATTC	.	77.0	28.0	77.0	0.0	.	Atlas-SNP
USP39	10713	hgsc.bcm.edu	37	2	85872161	85872161	+	Silent	SNP	C	C	T	rs145807458		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	USP39-658	NM_006590	exon11	c.C1518T	p.D506D	GCATGACGGCAAG	.	318.0	88.0	198.0	0.0	C|1.000;T|0.000	Atlas-SNP
MZT2A	653784	hgsc.bcm.edu	37	2	132241688	132241688	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	MZT2A-68	NM_001085365	exon3	c.C423T	p.T141T	CAGCCTGGTAGCG	.	333.0	25.0	161.0	0.0	.	Atlas-SNP
SPC25	57405	hgsc.bcm.edu	37	2	169745769	169745769	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	SPC25-226	NM_020675	exon3	c.C166A	p.R56R	CCATTCGTTCTTC	.	44.0	14.0	49.0	0.0	.	Atlas-SNP
ERBB4	2066	hgsc.bcm.edu	37	2	212589871	212589871	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ERBB4-1461	NM_005235	exon6	c.C671T	p.P224L	ACGTAAGGTCCGT	.	490.0	122.0	346.0	0.0	.	Atlas-SNP
FARSB	10056	hgsc.bcm.edu	37	2	223505606	223505607	+	Frame_Shift_Ins	INS	-	-	TT	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	FARSB-91	NM_005687	exon4	c.314_315insAA	p.I105fs	.	.	26.0	12.0	48.0	0.0	.	Pindel
SETD2	29072	hgsc.bcm.edu	37	3	47139519	47139519	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	SETD2-1273	NM_014159	exon9	c.G5068C	p.G1690R	CTCCTCCCAGGTA	.	36.0	4.0	54.0	0.0	.	Atlas-SNP
PDZRN3	23024	hgsc.bcm.edu	37	3	73437153	73437153	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	PDZRN3-232	NM_015009	exon8	c.A1484G	p.N495S	GAAAAGTTTTTAT	.	14.0	6.0	23.0	0.0	.	Atlas-SNP
BCHE	590	hgsc.bcm.edu	37	3	165548281	165548281	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	BCHE-94	NM_000055	exon2	c.T541C	p.F181L	CTAAGAATCCTAG	.	65.0	36.0	84.0	0.0	.	Atlas-SNP
ZNF639	51193	hgsc.bcm.edu	37	3	179051848	179051848	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ZNF639-90	NM_016331	exon7	c.A1096G	p.T366A	AAAATTACCTTTG	.	139.0	62.0	231.0	0.0	.	Atlas-SNP
ATP13A4	84239	hgsc.bcm.edu	37	3	193174877	193174877	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ATP13A4-92	NM_032279	exon16	c.A1827G	p.T609T	AATGACTGTCATT	.	161.0	76.0	161.0	0.0	.	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	37	3	41266132	41266155	+	In_Frame_Del	DEL	TCCTTCTCTGAGTGGTAAAGGCAA	TCCTTCTCTGAGTGGTAAAGGCAA	-	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	TCCTTCTCTGAGTGGTAAAGGCAA	TCCTTCTCTGAGTGGTAAAGGCAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	CTNNB1,NS,carcinoma,0	CTNNB1-24361	NM_001904	exon3	c.128_151del	p.43_51del	.	.	109.0	22.0	162.0	0.0	.	Pindel
CRIPAK	285464	hgsc.bcm.edu	37	4	1388867	1388867	+	Missense_Mutation	SNP	A	A	C	rs76058011	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	CRIPAK-90	NM_175918	exon1	c.A568C	p.I190L	CGCCTGATCACAC	.	383.0	28.0	44.0	0.0	A|0.994;C|0.006	Atlas-SNP
UGT2A3	79799	hgsc.bcm.edu	37	4	69817434	69817434	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	UGT2A3-92	NM_024743	exon1	c.C45G	p.L15L	ACAGAAGAGCTGC	.	91.0	32.0	59.0	0.0	.	Atlas-SNP
UGT2A3	79799	hgsc.bcm.edu	37	4	69817435	69817435	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	UGT2A3-92	NM_024743	exon1	c.T44A	p.L15H	CAGAAGAGCTGCA	.	91.0	32.0	58.0	0.0	.	Atlas-SNP
GPR98	84059	hgsc.bcm.edu	37	5	89986640	89986640	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	GPR98-103	NM_032119	exon31	c.G6733T	p.E2245X	ATTGTAGAGGAAC	.	126.0	41.0	98.0	0.0	.	Atlas-SNP
SLC23A1	9963	hgsc.bcm.edu	37	5	138714364	138714364	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	SLC23A1-90	NM_005847	exon10	c.C1083T	p.F361F	TTCGGTGAAGATG	.	238.0	24.0	157.0	0.0	.	Atlas-SNP
PCDHGA4	56111	hgsc.bcm.edu	37	5	140737208	140737208	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	.	NM_032053	exon1	c.G2441A	p.R814K	ATAATAGATCATA	.	103.0	17.0	125.0	0.0	.	Atlas-SNP
SLC26A2	1836	hgsc.bcm.edu	37	5	149360104	149360104	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	SLC26A2-90	NM_000112	exon3	c.G948C	p.L316F	TCTTTTGCCAACC	.	108.0	48.0	83.0	0.0	.	Atlas-SNP
HIST1H3H	8357	hgsc.bcm.edu	37	6	27777856	27777856	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	HIST1H3H-45	NM_003536	exon1	c.C5G	p.A2G	GCATGGCGCGTAC	.	240.0	52.0	80.0	0.0	.	Atlas-SNP
PPP1R18	170954	hgsc.bcm.edu	37	6	30652252	30652252	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	.	NM_001134870	exon2	c.T1544C	p.L515P	CCCCCCAGAACCA	.	135.0	9.0	91.0	0.0	.	Atlas-SNP
CUTA	51596	hgsc.bcm.edu	37	6	33385931	33385931	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	CUTA-90	NM_001014433	exon1	c.G32C	p.G11A	CCTGCGCCTCCAG	.	225.0	18.0	138.0	0.0	.	Atlas-SNP
PPARD	5467	hgsc.bcm.edu	37	6	35388052	35388052	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	PPARD-187	NM_001171818	exon5	c.G279T	p.G93G	TGAGGGGTGCAAG	.	91.0	42.0	54.0	0.0	.	Atlas-SNP
RCAN2	10231	hgsc.bcm.edu	37	6	46214635	46214635	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	RCAN2-90	NM_001251974	exon4	c.G421T	p.G141X	TGTCTCCATCTGT	.	98.0	5.0	97.0	0.0	.	Atlas-SNP
PKHD1	5314	hgsc.bcm.edu	37	6	51524734	51524734	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	PKHD1-603	NM_138694	exon61	c.A10190T	p.Q3397L	AGAAATTGGTATG	.	79.0	30.0	93.0	0.0	.	Atlas-SNP
MCM9	254394	hgsc.bcm.edu	37	6	119252669	119252669	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	MCM9-515	NM_153255	exon2	c.C220G	p.R74G	ACCTTCGCAGTGC	.	181.0	115.0	189.0	0.0	.	Atlas-SNP
KIAA1244	57221	hgsc.bcm.edu	37	6	138531144	138531144	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	KIAA1244-228	NM_020340	exon4	c.C317T	p.S106L	CGCCTTCGCTCAA	.	682.0	223.0	362.0	0.0	.	Atlas-SNP
KIF25	3834	hgsc.bcm.edu	37	6	168442715	168442715	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	KIF25-92	NM_030615	exon7	c.G713A	p.R238H	GGAGCCGCAGAGC	.	399.0	128.0	215.0	0.0	.	Atlas-SNP
REV3L	5980	hgsc.bcm.edu	37	6	111693904	111693904	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	REV3L-294	NM_002912	exon13	c.5655delA	p.P1885fs	.	.	127.0	56.0	109.0	0.0	.	Atlas-Indel
ABCB5	340273	hgsc.bcm.edu	37	7	20782576	20782576	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ABCB5-158	NM_178559	exon16	c.G1766A	p.R589H	TCCTCCGTGGCTT	.	252.0	98.0	172.0	0.0	.	Atlas-SNP
PTCD1	26024	hgsc.bcm.edu	37	7	99032679	99032679	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	PTCD1-91	NM_015545	exon2	c.A187T	p.T63S	TGCCCGTGTTTTC	.	66.0	18.0	56.0	0.0	.	Atlas-SNP
RELN	5649	hgsc.bcm.edu	37	7	103243773	103243773	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	RELN-574	NM_005045	exon24	c.G3311C	p.G1104A	GATGATCCAGAAG	.	164.0	44.0	156.0	0.0	.	Atlas-SNP
NOS3	4846	hgsc.bcm.edu	37	7	150698991	150698991	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	NOS3-1011	NM_000603	exon13	c.G1585T	p.G529C	GAGACCGGCCGGG	.	263.0	52.0	191.0	0.0	.	Atlas-SNP
KIAA1549	57670	hgsc.bcm.edu	37	7	138601908	138601908	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	KIAA1549-369	NM_001164665	exon2	c.2465delT	p.V822fs	.	.	141.0	29.0	96.0	0.0	.	Atlas-Indel
RP1L1	94137	hgsc.bcm.edu	37	8	10465856	10465856	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	RP1L1-139	NM_178857	exon4	c.G5752A	p.E1918K	CTGTCTCTGGCTG	.	45.0	8.0	30.0	0.0	.	Atlas-SNP
XPO7	23039	hgsc.bcm.edu	37	8	21845361	21845361	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	XPO7-273	NM_015024	exon15	c.G1780A	p.G594R	TTCATAGGAAAAA	.	257.0	54.0	173.0	0.0	.	Atlas-SNP
KIF13B	23303	hgsc.bcm.edu	37	8	29035052	29035052	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	KIF13B-22	NM_015254	exon9	c.C764T	p.A255V	CTGCCAGCTAAAT	.	124.0	26.0	93.0	0.0	.	Atlas-SNP
RB1CC1	9821	hgsc.bcm.edu	37	8	53569634	53569634	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	RB1CC1-170	NM_001083617	exon15	c.G2755T	p.E919X	CTTTTTCATGTTT	.	37.0	6.0	33.0	0.0	.	Atlas-SNP
C8orf46	254778	hgsc.bcm.edu	37	8	67428183	67428183	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	C8orf46-92	NM_152765	exon6	c.G496A	p.E166K	GGAGCAGAAGCCT	.	47.0	7.0	45.0	0.0	.	Atlas-SNP
RSPO2	340419	hgsc.bcm.edu	37	8	108970363	108970363	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	RSPO2-231	NM_178565	exon5	c.T561C	p.C187C	GGTTGGACACAGT	.	298.0	61.0	146.0	0.0	.	Atlas-SNP
C9orf170	401535	hgsc.bcm.edu	37	9	89771511	89771511	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	C9orf170-90	NM_001001709	exon2	c.G192T	p.L64L	AACCCTGACTAAT	.	78.0	15.0	85.0	0.0	.	Atlas-SNP
GALNT12	79695	hgsc.bcm.edu	37	9	101589096	101589096	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	GALNT12-92	NM_024642	exon3	c.G604A	p.A202T	ATCCGCGCCAACA	.	119.0	34.0	39.0	0.0	.	Atlas-SNP
GRIN3A	116443	hgsc.bcm.edu	37	9	104449164	104449164	+	Missense_Mutation	SNP	C	C	T	rs145326290		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	GRIN3A-96	NM_133445	exon2	c.G1018A	p.E340K	TAATTTCGAAAAT	.	67.0	16.0	82.0	0.0	C|0.999;T|0.000	Atlas-SNP
TMEM8C	389827	hgsc.bcm.edu	37	9	136379902	136379902	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	TMEM8C-68	NM_001080483	exon5	c.G522A	p.W174X	GTAGTCCCAGTCC	.	103.0	32.0	68.0	0.0	.	Atlas-SNP
NLGN4X	57502	hgsc.bcm.edu	37	X	5821337	5821337	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	NLGN4X-195	NM_020742	exon5	c.C1382T	p.A461V	TACTGCGCGTGCA	.	197.0	99.0	170.0	0.0	.	Atlas-SNP
FAM9A	171482	hgsc.bcm.edu	37	X	8763192	8763192	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	FAM9A-130	NM_174951	exon7	c.G758T	p.G253V	CCTCCTCCTCCTT	.	58.0	35.0	57.0	0.0	.	Atlas-SNP
WDR45	11152	hgsc.bcm.edu	37	X	48935337	48935337	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	WDR45-131	NM_001029896	exon4	c.G200A	p.G67D	CCACCGCCCACCA	.	111.0	59.0	129.0	0.0	.	Atlas-SNP
MAGIX	79917	hgsc.bcm.edu	37	X	49021301	49021301	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	MAGIX-108	NM_001099680	exon2	c.A179T	p.E60V	CTGTGGAGCTGGT	.	95.0	39.0	101.0	0.0	.	Atlas-SNP
ARL13A	392509	hgsc.bcm.edu	37	X	100229150	100229150	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ARL13A-131	NM_001012990	exon3	c.T94C	p.S32P	AACAACTCTGGCA	.	83.0	7.0	112.0	0.0	.	Atlas-SNP
ZMAT1	84460	hgsc.bcm.edu	37	X	101139313	101139313	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ZMAT1-131	NM_001011657	exon7	c.G1086A	p.Q362Q	GTAGGTCTGGGAA	.	133.0	19.0	149.0	0.0	.	Atlas-SNP
PAK3	5063	hgsc.bcm.edu	37	X	110439738	110439738	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	PAK3-1043	NM_001128166	exon14	c.C1277T	p.P426L	GAACCCCATATTG	.	152.0	60.0	137.0	0.0	.	Atlas-SNP
WDR44	54521	hgsc.bcm.edu	37	X	117532433	117532433	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	WDR44-133	NM_001184966	exon7	c.C1199A	p.T400K	AGAAAACGTGAGT	.	383.0	147.0	540.0	0.0	.	Atlas-SNP
TAZ	6901	hgsc.bcm.edu	37	X	153647890	153647890	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	TAZ-130	NM_000116	exon6	c.G469A	p.V157I	GATGGCGTCTACC	.	267.0	109.0	253.0	0.0	.	Atlas-SNP
