Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Algorithm
AKR1C4	1109	hgsc.bcm.edu	37	10	5254964	5254964	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	AKR1C4-91	NM_001818	exon7	c.C688A	p.P230T	GTGGACCCAAACT	.	224.0	81.0	169.0	0.0	.	Atlas-SNP
PRKCQ	5588	hgsc.bcm.edu	37	10	6521128	6521128	+	Splice_Site	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PRKCQ-1380	NM_006257	exon13	c.1180-1G>T	.	GAAGACCTAGAAG	.	138.0	45.0	114.0	0.0	.	Atlas-SNP
ITIH2	3698	hgsc.bcm.edu	37	10	7763735	7763735	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ITIH2-93	NM_002216	exon8	c.C862A	p.L288M	GGTGAACTGGAGG	.	219.0	76.0	191.0	0.0	.	Atlas-SNP
ATP5C1	509	hgsc.bcm.edu	37	10	7841035	7841035	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ATP5C1-90	NM_001001973	exon4	c.G306C	p.L102L	AGGACTGTGTGGT	.	306.0	85.0	306.0	0.0	.	Atlas-SNP
UCMA	221044	hgsc.bcm.edu	37	10	13275734	13275734	+	Splice_Site	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	UCMA-90	NM_145314	exon3	c.124+1G>T	.	CACTCACCTTCAC	.	83.0	30.0	67.0	0.0	.	Atlas-SNP
CUBN	8029	hgsc.bcm.edu	37	10	16949626	16949626	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CUBN-166	NM_001081	exon49	c.G7586A	p.S2529N	TTCACACTACTAC	.	190.0	71.0	163.0	0.0	.	Atlas-SNP
CUBN	8029	hgsc.bcm.edu	37	10	16970184	16970184	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CUBN-166	NM_001081	exon41	c.G6243C	p.R2081S	GCCTGCCCTGGTT	.	59.0	32.0	65.0	0.0	.	Atlas-SNP
MRC1	4360	hgsc.bcm.edu	37	10	18138668	18138668	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MRC1-68	NM_002438	exon7	c.C1224G	p.D408E	ATTGGACTTTATT	.	311.0	235.0	306.0	1.0	.	Atlas-SNP
SLC39A12	221074	hgsc.bcm.edu	37	10	18254445	18254445	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC39A12-154	NM_001145195	exon4	c.G577T	p.G193X	AAATCTGGAATAG	.	49.0	12.0	62.0	0.0	.	Atlas-SNP
MSRB2	22921	hgsc.bcm.edu	37	10	23408289	23408289	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MSRB2-90	NM_012228	exon4	c.G353A	p.G118D	CTCATGGTACGTC	.	153.0	54.0	116.0	0.0	.	Atlas-SNP
GPR158	57512	hgsc.bcm.edu	37	10	25701255	25701255	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPR158-141	NM_020752	exon4	c.G1188T	p.R396S	TTGCAGGGAGGGC	.	242.0	86.0	206.0	0.0	.	Atlas-SNP
GPR158	57512	hgsc.bcm.edu	37	10	25839904	25839904	+	Splice_Site	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPR158-141	NM_020752	exon6	c.1405-1G>T	.	CCCACAGGTTGTT	.	160.0	52.0	118.0	0.0	.	Atlas-SNP
GPR158	57512	hgsc.bcm.edu	37	10	25885596	25885596	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPR158-141	NM_020752	exon10	c.C2023G	p.R675G	AACCCACGAGATG	.	125.0	42.0	141.0	0.0	.	Atlas-SNP
ZEB1	6935	hgsc.bcm.edu	37	10	31750115	31750115	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZEB1-518	NM_001174093	exon2	c.G208T	p.G70W	TTACCAGGGAGGA	.	279.0	103.0	240.0	0.0	.	Atlas-SNP
ANKRD30A	91074	hgsc.bcm.edu	37	10	37422904	37422904	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ANKRD30A-161	NM_052997	exon5	c.G510T	p.Q170H	TCTTCAGCAAAAT	.	152.0	66.0	157.0	0.0	.	Atlas-SNP
ANKRD30A	91074	hgsc.bcm.edu	37	10	37508068	37508068	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ANKRD30A-161	NM_052997	exon34	c.A3260G	p.N1087S	AAAAGAATGCTGA	.	252.0	49.0	240.0	0.0	.	Atlas-SNP
RET	5979	hgsc.bcm.edu	37	10	43609034	43609034	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RET-4507	NM_020975	exon10	c.G1790T	p.G597V	AGCCTGGGGAGCC	.	33.0	14.0	21.0	0.0	.	Atlas-SNP
RASGEF1A	221002	hgsc.bcm.edu	37	10	43692433	43692433	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RASGEF1A-227	NM_145313	exon11	c.A1339T	p.S447C	CCTCGCTGTAGAT	.	150.0	62.0	154.0	0.0	.	Atlas-SNP
PPYR1	5540	hgsc.bcm.edu	37	10	47087507	47087507	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PPYR1-524	NM_005972	exon3	c.C724A	p.Q242K	CGCCTGCAGAGGC	.	131.0	28.0	121.0	0.0	.	Atlas-SNP
ARHGAP22	58504	hgsc.bcm.edu	37	10	49658873	49658873	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ARHGAP22-228	NM_001256024	exon9	c.G1347C	p.R449R	CGGCTGCCGGAAG	.	186.0	68.0	106.0	0.0	.	Atlas-SNP
WDFY4	57705	hgsc.bcm.edu	37	10	49918000	49918000	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	WDFY4-22	NM_020945	exon2	c.C223A	p.L75I	CTCCCCCTATTCC	.	45.0	16.0	57.0	0.0	.	Atlas-SNP
WDFY4	57705	hgsc.bcm.edu	37	10	49934093	49934093	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	WDFY4-22	NM_020945	exon6	c.C759G	p.L253L	GAACCTCAGCATC	.	170.0	31.0	119.0	0.0	.	Atlas-SNP
C10orf71	118461	hgsc.bcm.edu	37	10	50532949	50532949	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	C10orf71-90	NM_001135196	exon3	c.G2359T	p.G787W	AGCAATGGGCACG	.	197.0	68.0	153.0	0.0	.	Atlas-SNP
SLC18A3	6572	hgsc.bcm.edu	37	10	50819769	50819769	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC18A3-92	NM_003055	exon1	c.G983T	p.G328V	AGATGGGCATGGC	.	59.0	17.0	39.0	0.0	.	Atlas-SNP
PARG	8505	hgsc.bcm.edu	37	10	51040918	51040918	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PARG-948	NM_003631	exon16	c.G2578T	p.E860X	GATTCTCTGAAGA	.	163.0	52.0	145.0	0.0	.	Atlas-SNP
A1CF	29974	hgsc.bcm.edu	37	10	52573773	52573773	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	A1CF-68	NM_001198818	exon11	c.C1167A	p.G389G	ACGGCCGCCCAGT	.	93.0	32.0	83.0	0.0	.	Atlas-SNP
PCDH15	65217	hgsc.bcm.edu	37	10	56106181	56106181	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDH15-193	NM_001142767	exon6	c.G538C	p.D180H	CATCATCTATATC	.	75.0	15.0	56.0	0.0	.	Atlas-SNP
BICC1	80114	hgsc.bcm.edu	37	10	60562966	60562966	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BICC1-72	NM_001080512	exon15	c.C2145T	p.A715A	AAGGGCCCACCTT	.	108.0	26.0	152.0	0.0	.	Atlas-SNP
FAM13C	220965	hgsc.bcm.edu	37	10	61029737	61029737	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM13C-70	NM_001143773	exon8	c.C476A	p.S159Y	AAGATGGAGCATC	.	130.0	53.0	216.0	0.0	.	Atlas-SNP
FAM13C	220965	hgsc.bcm.edu	37	10	61112192	61112192	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM13C-70	NM_001001971	exon3	c.G162T	p.L54L	TTCTACCAGAGCC	.	33.0	8.0	36.0	0.0	.	Atlas-SNP
ANK3	288	hgsc.bcm.edu	37	10	61815615	61815615	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ANK3-107	NM_020987	exon42	c.G12866C	p.G4289A	CCAGATCCATGTA	.	111.0	47.0	123.0	0.0	.	Atlas-SNP
CTNNA3	29119	hgsc.bcm.edu	37	10	68139070	68139070	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CTNNA3-234	NM_013266	exon12	c.C1572A	p.A524A	TCTTAAGGCTATG	.	123.0	32.0	115.0	0.0	.	Atlas-SNP
CTNNA3	29119	hgsc.bcm.edu	37	10	68139071	68139071	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CTNNA3-234	NM_013266	exon12	c.C1571A	p.A524D	CTTAAGGCTATGA	.	123.0	32.0	116.0	0.0	.	Atlas-SNP
TET1	80312	hgsc.bcm.edu	37	10	70450767	70450767	+	Silent	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TET1-663	NM_030625	exon12	c.A5607T	p.S1869S	AGCCTCATGCGGG	.	96.0	26.0	74.0	0.0	.	Atlas-SNP
STOX1	219736	hgsc.bcm.edu	37	10	70644278	70644278	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	STOX1-92	NM_152709	exon3	c.G726T	p.Q242H	CTGTCAGTCTTGC	.	109.0	46.0	126.0	0.0	.	Atlas-SNP
CDH23	64072	hgsc.bcm.edu	37	10	73326680	73326680	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CDH23-563	NM_052836	exon7	c.C611A	p.T204K	AGCTCACGGTCAA	.	29.0	22.0	50.0	0.0	.	Atlas-SNP
CDH23	64072	hgsc.bcm.edu	37	10	73405591	73405591	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CDH23-563	NM_052836	exon12	c.C1144A	p.L382M	CAGGGCCTGAACA	.	237.0	96.0	218.0	0.0	.	Atlas-SNP
CHST3	9469	hgsc.bcm.edu	37	10	73766985	73766985	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CHST3-90	NM_004273	exon3	c.G196T	p.D66Y	AGCACCGACCCAG	.	105.0	39.0	123.0	0.0	.	Atlas-SNP
PPP3CB	5532	hgsc.bcm.edu	37	10	75239173	75239173	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PPP3CB-226	NM_001142353	exon2	c.G188T	p.G63V	ACTCGACCTTCTT	.	107.0	29.0	126.0	0.0	.	Atlas-SNP
DUSP13	51207	hgsc.bcm.edu	37	10	76861715	76861715	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DUSP13-226	NM_001007273	exon3	c.A188T	p.Q63L	TGATGCTGTTTCT	.	56.0	10.0	62.0	0.0	.	Atlas-SNP
RPS24	6229	hgsc.bcm.edu	37	10	79814544	79814544	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RPS24-91	NM_001142285	exon5	c.G646T	p.V216F	GCACTGGTCAGAA	.	192.0	82.0	173.0	0.0	.	Atlas-SNP
CDHR1	92211	hgsc.bcm.edu	37	10	85961590	85961590	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CDHR1-91	NM_001171971	exon7	c.C553A	p.R185S	GTGGACCGCCACA	.	33.0	16.0	30.0	0.0	.	Atlas-SNP
BMPR1A	657	hgsc.bcm.edu	37	10	88649911	88649911	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BMPR1A-1619	NM_004329	exon4	c.G160C	p.D54H	CCAGAGGATACCT	.	234.0	47.0	254.0	0.0	.	Atlas-SNP
IFIT5	24138	hgsc.bcm.edu	37	10	91177055	91177055	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IFIT5-90	NM_012420	exon2	c.G99A	p.E33E	GTTTGAGGTAGAA	.	125.0	40.0	138.0	0.0	.	Atlas-SNP
PIK3AP1	118788	hgsc.bcm.edu	37	10	98355338	98355338	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PIK3AP1-519	NM_152309	exon17	c.G2414C	p.R805P	AATCAGCGTCCTC	.	180.0	39.0	203.0	0.0	.	Atlas-SNP
PYROXD2	84795	hgsc.bcm.edu	37	10	100159880	100159880	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PYROXD2-90	NM_032709	exon5	c.G450T	p.Q150H	GGAGAACTGGGCG	.	79.0	32.0	109.0	0.0	.	Atlas-SNP
CWF19L1	55280	hgsc.bcm.edu	37	10	101995432	101995432	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CWF19L1-90	NM_018294	exon13	c.G1464A	p.Q488Q	TCCAAACTGCAAA	.	25.0	6.0	23.0	0.0	.	Atlas-SNP
PAX2	5076	hgsc.bcm.edu	37	10	102568924	102568924	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PAX2-90	NM_003987	exon8	c.C919T	p.L307L	TCGAGTCTATCTG	.	100.0	43.0	100.0	0.0	.	Atlas-SNP
INA	9118	hgsc.bcm.edu	37	10	105037222	105037222	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	INA-154	NM_032727	exon1	c.A254G	p.N85S	GCACCAACGAGTA	.	50.0	13.0	10.0	0.0	.	Atlas-SNP
CALHM3	119395	hgsc.bcm.edu	37	10	105236155	105236155	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CALHM3-67	NM_001129742	exon2	c.C439A	p.Q147K	GTACCTGGCTGGG	.	425.0	140.0	254.0	0.0	.	Atlas-SNP
SORCS3	22986	hgsc.bcm.edu	37	10	106401534	106401534	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SORCS3-99	NM_014978	exon1	c.C449T	p.P150L	CTGCTCCGGCCGA	.	107.0	14.0	18.0	0.0	.	Atlas-SNP
SORCS3	22986	hgsc.bcm.edu	37	10	106737189	106737189	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SORCS3-99	NM_014978	exon4	c.C892A	p.Q298K	TATATCCAGAGCC	.	58.0	9.0	31.0	0.0	.	Atlas-SNP
SORCS3	22986	hgsc.bcm.edu	37	10	106970974	106970974	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SORCS3-99	NM_014978	exon17	c.T2341A	p.C781S	AAGGACTGCAGCC	.	216.0	59.0	186.0	0.0	.	Atlas-SNP
SORCS1	114815	hgsc.bcm.edu	37	10	108338952	108338952	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SORCS1-153	NM_001206572	exon26	c.G3429T	p.M1143I	ACTGATCATCTCT	.	115.0	26.0	76.0	0.0	.	Atlas-SNP
SORCS1	114815	hgsc.bcm.edu	37	10	108448031	108448031	+	Missense_Mutation	SNP	G	G	C	rs145364719	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SORCS1-153	NM_001206572	exon10	c.C1479G	p.I493M	ATATGTGATGAAA	.	189.0	26.0	146.0	0.0	G|1.000;A|0.000	Atlas-SNP
SORCS1	114815	hgsc.bcm.edu	37	10	108589374	108589374	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SORCS1-153	NM_001206572	exon3	c.C684A	p.T228T	CAAAATGGTTTTC	.	160.0	17.0	108.0	0.0	.	Atlas-SNP
RBM20	282996	hgsc.bcm.edu	37	10	112572474	112572474	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001134363	exon9	c.G2319T	p.K773N	TCTGAAGCAGCAG	.	159.0	70.0	98.0	0.0	.	Atlas-SNP
ADRA2A	150	hgsc.bcm.edu	37	10	112838012	112838012	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADRA2A-90	NM_000681	exon1	c.C258T	p.F86F	CCTCTTCCTGGTG	.	239.0	80.0	128.0	0.0	.	Atlas-SNP
ADRA2A	150	hgsc.bcm.edu	37	10	112838129	112838129	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADRA2A-90	NM_000681	exon1	c.G375T	p.L125L	CTACCTGGCGCTC	.	311.0	83.0	161.0	0.0	.	Atlas-SNP
TDRD1	56165	hgsc.bcm.edu	37	10	115991247	115991247	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TDRD1-90	NM_198795	exon26	c.A3541G	p.T1181A	TCAGAAACAGCAT	.	59.0	18.0	52.0	0.0	.	Atlas-SNP
ABLIM1	3983	hgsc.bcm.edu	37	10	116201527	116201527	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ABLIM1-153	NM_006720	exon13	c.C983T	p.S328F	GTTTTAGATGATG	.	163.0	39.0	90.0	0.0	.	Atlas-SNP
ABLIM1	3983	hgsc.bcm.edu	37	10	116444073	116444073	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ABLIM1-153	NM_001003407	exon1	c.C40T	p.H14Y	TGTGATGAGGGTC	.	275.0	63.0	138.0	0.0	.	Atlas-SNP
GFRA1	2674	hgsc.bcm.edu	37	10	118030372	118030372	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GFRA1-93	NM_001145453	exon3	c.G296T	p.C99F	CGCAGGCAGTTCT	.	152.0	37.0	83.0	0.0	.	Atlas-SNP
PNLIP	5406	hgsc.bcm.edu	37	10	118306857	118306857	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PNLIP-92	NM_000936	exon3	c.G98T	p.W33L	CCCCATGGTCAGG	.	161.0	21.0	104.0	0.0	.	Atlas-SNP
PNLIP	5406	hgsc.bcm.edu	37	10	118315585	118315585	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PNLIP-92	NM_000936	exon9	c.T885G	p.D295E	CCCTGATGGCTTT	.	184.0	45.0	104.0	0.0	.	Atlas-SNP
C10orf82	143379	hgsc.bcm.edu	37	10	118424447	118424447	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	C10orf82-90	NM_144661	exon4	c.G286C	p.V96L	TCTTTACATATTT	.	46.0	7.0	32.0	0.0	.	Atlas-SNP
C10orf82	143379	hgsc.bcm.edu	37	10	118425218	118425218	+	Missense_Mutation	SNP	C	C	G	rs144390968	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	C10orf82-90	NM_144661	exon3	c.G175C	p.A59P	CCACTGCGCAGCA	.	260.0	35.0	149.0	0.0	C|1.000;T|0.000	Atlas-SNP
VAX1	11023	hgsc.bcm.edu	37	10	118893665	118893665	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	VAX1-92	NM_001112704	exon3	c.C859A	p.R287S	ACAGGCGGCTGGC	.	62.0	16.0	18.0	0.0	.	Atlas-SNP
VAX1	11023	hgsc.bcm.edu	37	10	118897336	118897336	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	VAX1-92	NM_199131	exon1	c.C232A	p.L78M	GGACCAGGATCCG	.	146.0	58.0	50.0	0.0	.	Atlas-SNP
KCNK18	338567	hgsc.bcm.edu	37	10	118969655	118969655	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KCNK18-91	NM_181840	exon3	c.C1000A	p.P334T	GAACACCCTAACT	.	316.0	105.0	199.0	0.0	.	Atlas-SNP
SLC18A2	6571	hgsc.bcm.edu	37	10	119003663	119003663	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC18A2-90	NM_003054	exon3	c.C303A	p.T101T	TCAGACCGCCACA	.	231.0	41.0	135.0	0.0	.	Atlas-SNP
EMX2	2018	hgsc.bcm.edu	37	10	119305183	119305183	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EMX2-90	NM_004098	exon2	c.G447T	p.A149A	CAACGCGCTGGCC	.	605.0	223.0	410.0	1.0	.	Atlas-SNP
PRLHR	2834	hgsc.bcm.edu	37	10	120353662	120353662	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PRLHR-90	NM_004248	exon2	c.C1095G	p.T365T	GCTGACGGTCATA	.	331.0	53.0	161.0	0.0	.	Atlas-SNP
PRLHR	2834	hgsc.bcm.edu	37	10	120354576	120354576	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PRLHR-90	NM_004248	exon2	c.G181T	p.G61W	TCAGCCCCTTCAG	.	372.0	97.0	80.0	0.0	.	Atlas-SNP
SFXN4	119559	hgsc.bcm.edu	37	10	120921874	120921874	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SFXN4-91	NM_213649	exon3	c.G230A	p.S77N	GCAGGGCTGGAAA	.	329.0	122.0	195.0	0.0	.	Atlas-SNP
SEC23IP	11196	hgsc.bcm.edu	37	10	121685604	121685604	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SEC23IP-93	NM_007190	exon13	c.G2178T	p.E726D	ACAAGAGCAAAGT	.	168.0	68.0	134.0	0.0	.	Atlas-SNP
TACC2	10579	hgsc.bcm.edu	37	10	124008228	124008228	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TACC2-296	NM_006997	exon14	c.C2697T	p.A899A	GCAAGCCCTGGCC	.	181.0	33.0	110.0	0.0	.	Atlas-SNP
HMX2	3167	hgsc.bcm.edu	37	10	124907940	124907940	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HMX2-90	NM_005519	exon1	c.G46T	p.G16C	GCCGGTGGCGTCT	.	226.0	71.0	102.0	0.0	.	Atlas-SNP
HMX2	3167	hgsc.bcm.edu	37	10	124907941	124907941	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HMX2-90	NM_005519	exon1	c.G47T	p.G16V	CCGGTGGCGTCTC	.	226.0	72.0	101.0	0.0	.	Atlas-SNP
CPXM2	119587	hgsc.bcm.edu	37	10	125639753	125639753	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CPXM2-92	NM_198148	exon2	c.G377T	p.R126L	GCCACACGGACAC	.	138.0	21.0	91.0	0.0	.	Atlas-SNP
CPXM2	119587	hgsc.bcm.edu	37	10	125639754	125639754	+	Missense_Mutation	SNP	G	G	C	rs202210136	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CPXM2-92	NM_198148	exon2	c.C376G	p.R126G	CCACACGGACACT	.	141.0	21.0	95.0	0.0	.	Atlas-SNP
ADAM12	8038	hgsc.bcm.edu	37	10	127806696	127806696	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADAM12-716	NM_021641	exon6	c.G523T	p.V175F	CCCGGACGCTTTT	.	235.0	54.0	135.0	0.0	.	Atlas-SNP
C10orf90	118611	hgsc.bcm.edu	37	10	128153420	128153420	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	C10orf90-92	NM_001004298	exon4	c.G1379C	p.C460S	GACAGACAGTCAT	.	279.0	25.0	164.0	0.0	.	Atlas-SNP
MGMT	4255	hgsc.bcm.edu	37	10	131565118	131565118	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MGMT-1108	NM_002412	exon5	c.G574C	p.G192R	TCCGGAGGACTGG	.	338.0	42.0	220.0	0.0	.	Atlas-SNP
EBF3	253738	hgsc.bcm.edu	37	10	131638572	131638572	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EBF3-91	NM_001005463	exon15	c.G1561T	p.V521L	GGACCACGGGCGC	.	207.0	30.0	125.0	0.0	.	Atlas-SNP
TTC40	54777	hgsc.bcm.edu	37	10	134648207	134648207	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001200049	exon48	c.G6817A	p.E2273K	GCTCCTCCAGGGG	.	239.0	68.0	154.0	0.0	.	Atlas-SNP
TTC40	54777	hgsc.bcm.edu	37	10	134663902	134663902	+	Missense_Mutation	SNP	C	C	T	rs143782266	byfrequency;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001200049	exon41	c.G5798A	p.G1933E	AGTGCCCCGTGTG	.	346.0	92.0	103.0	0.0	C|0.999;G|0.001	Atlas-SNP
TTC40	54777	hgsc.bcm.edu	37	10	134664665	134664665	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001200049	exon40	c.G5719T	p.A1907S	AGTCCGCCAGCAG	.	209.0	31.0	145.0	0.0	.	Atlas-SNP
ECHS1	1892	hgsc.bcm.edu	37	10	135179540	135179540	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ECHS1-90	NM_004092	exon6	c.G679T	p.E227X	TTTTTTCTGCACA	.	127.0	28.0	78.0	0.0	.	Atlas-SNP
MTG1	92170	hgsc.bcm.edu	37	10	135209699	135209699	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MTG1-91	NM_138384	exon3	c.G210T	p.Q70H	GTTTCAGGAAACC	.	146.0	24.0	89.0	0.0	.	Atlas-SNP
ITIH5	80760	hgsc.bcm.edu	37	10	7659227	7659227	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ITIH5-92	NM_032817	exon2	c.30delA	p.P10fs	.	.	50.0	22.0	55.0	0.0	.	Atlas-Indel
PAX2	5076	hgsc.bcm.edu	37	10	102509533	102509534	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PAX2-90	NM_003990	exon2	c.74_75insA	p.G25fs	.	.	114.0	30.0	59.0	0.0	.	Atlas-Indel
TDRD1	56165	hgsc.bcm.edu	37	10	115991245	115991245	+	Splice_Site	DEL	A	A	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TDRD1-90	NM_198795	exon26	c.3539-1A>-	.	.	.	59.0	18.0	52.0	0.0	.	Atlas-Indel
PNLIPRP1	5407	hgsc.bcm.edu	37	10	118350667	118350667	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PNLIPRP1-154	NM_006229	exon2	c.25delC	p.L9fs	.	.	69.0	19.0	37.0	0.0	.	Atlas-Indel
TDRD1	56165	hgsc.bcm.edu	37	10	115991246	115991247	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	AA	AA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TDRD1-90	NM_198795	exon26	c.3539_3540del	p.1180_1180del	.	.	60.0	10.0	52.0	0.0	.	Pindel
PHRF1	57661	hgsc.bcm.edu	37	11	607214	607214	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PHRF1-22	NM_020901	exon14	c.A1755T	p.Q585H	CTGTCAAGGCAGG	.	45.0	32.0	21.0	0.0	.	Atlas-SNP
MUC5B	727897	hgsc.bcm.edu	37	11	1269567	1269567	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_002458	exon31	c.G11457T	p.M3819I	CACCATGTCCACA	.	599.0	261.0	740.0	1.0	.	Atlas-SNP
BRSK2	9024	hgsc.bcm.edu	37	11	1464775	1464775	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BRSK2-333	NM_001256629	exon8	c.G690T	p.R230R	GAAGCGGGGCGTG	.	62.0	34.0	51.0	0.0	.	Atlas-SNP
C11orf40	143501	hgsc.bcm.edu	37	11	4592668	4592668	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	C11orf40-92	NM_144663	exon4	c.G639C	p.L213F	GGACTTCAAGTAG	.	37.0	22.0	70.0	0.0	.	Atlas-SNP
OR51A4	401666	hgsc.bcm.edu	37	11	4968178	4968178	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR51A4-71	NM_001005329	exon1	c.C153A	p.I51I	TGTCTTGATGATA	.	510.0	300.0	794.0	1.0	.	Atlas-SNP
FAM160A2	84067	hgsc.bcm.edu	37	11	6245247	6245247	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM160A2-92	NM_032127	exon3	c.G370T	p.E124X	GTTCCTCGACCCC	.	73.0	36.0	101.0	0.0	.	Atlas-SNP
DCHS1	8642	hgsc.bcm.edu	37	11	6661671	6661671	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DCHS1-73	NM_003737	exon2	c.G1174T	p.D392Y	CTGGGTCTGACAC	.	69.0	33.0	134.0	0.0	.	Atlas-SNP
OR2D2	120776	hgsc.bcm.edu	37	11	6913108	6913108	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR2D2-501	NM_003700	exon1	c.C624A	p.L208L	AGGTATGAGGAGA	.	68.0	37.0	92.0	0.0	.	Atlas-SNP
OR2D3	120775	hgsc.bcm.edu	37	11	6942958	6942958	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR2D3-68	NM_001004684	exon1	c.C726A	p.I242I	TGTTATCCAGATG	.	146.0	75.0	213.0	0.0	.	Atlas-SNP
OR5P2	120065	hgsc.bcm.edu	37	11	7817640	7817640	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR5P2-496	NM_153444	exon1	c.C850A	p.L284M	AGATCAGGGGGTT	.	206.0	119.0	224.0	0.0	.	Atlas-SNP
ADM	133	hgsc.bcm.edu	37	11	10328160	10328160	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADM-514	NM_001124	exon4	c.C530A	p.P177Q	CCCCCCCGAGTGG	.	118.0	70.0	96.0	0.0	.	Atlas-SNP
INSC	387755	hgsc.bcm.edu	37	11	15197588	15197588	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	INSC-94	NM_001042536	exon3	c.G358T	p.E120X	GTCAGCGAGTACA	.	146.0	59.0	187.0	0.0	.	Atlas-SNP
SOX6	55553	hgsc.bcm.edu	37	11	16256218	16256218	+	Splice_Site	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SOX6-93	NM_001145811	exon5	c.446-1G>T	.	AGGAATCTATTAA	.	11.0	6.0	12.0	0.0	.	Atlas-SNP
USH1C	10083	hgsc.bcm.edu	37	11	17552712	17552712	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	USH1C-91	NM_153676	exon4	c.G376T	p.V126F	GCCCGACGCTGTC	.	128.0	73.0	199.0	0.0	.	Atlas-SNP
NELL1	4745	hgsc.bcm.edu	37	11	21596527	21596527	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NELL1-155	NM_006157	exon20	c.G2392T	p.V798F	GGAAGAGTCTGTT	.	58.0	26.0	105.0	0.0	.	Atlas-SNP
SLC17A6	57084	hgsc.bcm.edu	37	11	22363120	22363120	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC17A6-580	NM_020346	exon2	c.G133C	p.E45Q	CTGACGGAGGATG	.	57.0	33.0	102.0	0.0	.	Atlas-SNP
SLC17A6	57084	hgsc.bcm.edu	37	11	22399006	22399006	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC17A6-580	NM_020346	exon12	c.G1469T	p.G490V	ATGGTGGAGTTAT	.	88.0	51.0	149.0	0.0	.	Atlas-SNP
KCNA4	3739	hgsc.bcm.edu	37	11	30034154	30034154	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KCNA4-517	NM_002233	exon2	c.G72T	p.Q24H	CCGGGCCTGGGCA	.	19.0	6.0	15.0	0.0	.	Atlas-SNP
DCDC5	100506627	hgsc.bcm.edu	37	11	30915876	30915876	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DCDC5-23	NM_020869	exon16	c.G2133T	p.V711V	GGGCTGCACAGGG	.	56.0	26.0	85.0	0.0	.	Atlas-SNP
WT1	7490	hgsc.bcm.edu	37	11	32414240	32414240	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	WT1-6891	NM_001198551	exon8	c.G675T	p.Q225H	TTTGAGCTGGTCT	.	142.0	80.0	185.0	0.0	.	Atlas-SNP
CCDC73	493860	hgsc.bcm.edu	37	11	32635948	32635948	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CCDC73-91	NM_001008391	exon16	c.T1916A	p.I639K	GGAACAGGATTTT	.	38.0	21.0	52.0	0.0	.	Atlas-SNP
QSER1	79832	hgsc.bcm.edu	37	11	32956724	32956724	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	QSER1-95	NM_001076786	exon4	c.G3533T	p.R1178L	CTAGACGGCCAGG	.	68.0	35.0	131.0	0.0	.	Atlas-SNP
KIAA1549L	25758	hgsc.bcm.edu	37	11	33564462	33564462	+	Silent	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_012194	exon1	c.A462T	p.S154S	TTTGTCAGCAGCT	.	65.0	33.0	94.0	0.0	.	Atlas-SNP
PAMR1	25891	hgsc.bcm.edu	37	11	35457622	35457622	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PAMR1-70	NM_001001991	exon9	c.C1162A	p.P388T	TGGTAGGGGCACT	.	255.0	142.0	308.0	0.0	.	Atlas-SNP
RAG1	5896	hgsc.bcm.edu	37	11	36596616	36596616	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RAG1-230	NM_000448	exon2	c.G1762T	p.D588Y	CTTGATGATTACC	.	136.0	75.0	198.0	1.0	.	Atlas-SNP
LRP4	4038	hgsc.bcm.edu	37	11	46880716	46880716	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LRP4-94	NM_002334	exon38	c.G5536T	p.D1846Y	CCGTGTCTGTCTT	.	87.0	27.0	107.0	0.0	.	Atlas-SNP
OR4S1	256148	hgsc.bcm.edu	37	11	48328090	48328090	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR4S1-69	NM_001004725	exon1	c.G316C	p.G106R	TTCTTTGGTGGCA	.	84.0	52.0	116.0	0.0	.	Atlas-SNP
FOLH1	2346	hgsc.bcm.edu	37	11	49195014	49195014	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FOLH1-579	NM_001193471	exon11	c.C1075T	p.L359L	CTCCCAGAATGAC	.	80.0	38.0	117.0	0.0	.	Atlas-SNP
OR4C46	119749	hgsc.bcm.edu	37	11	51515827	51515827	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR4C46-69	NM_001004703	exon1	c.G546T	p.L182F	CCCTTTGCTCAAC	.	103.0	54.0	124.0	0.0	.	Atlas-SNP
OR4C11	219429	hgsc.bcm.edu	37	11	55371701	55371701	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR4C11-69	NM_001004700	exon1	c.G149A	p.S50N	GTCCGGCTGGACT	.	34.0	23.0	59.0	0.0	.	Atlas-SNP
OR4C6	219432	hgsc.bcm.edu	37	11	55432829	55432829	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR4C6-70	NM_001004704	exon1	c.T187A	p.F63I	CTTACCTTCTTGT	.	113.0	70.0	141.0	0.0	.	Atlas-SNP
OR4C6	219432	hgsc.bcm.edu	37	11	55433022	55433022	+	Missense_Mutation	SNP	C	C	A	rs139660252	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	OR4C6,hand,malignant_melanoma,0	OR4C6-70	NM_001004704	exon1	c.C380A	p.P127H	GTAAGCCCCTGCA	.	98.0	41.0	115.0	0.0	.	Atlas-SNP
OR4C6	219432	hgsc.bcm.edu	37	11	55433023	55433023	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	OR4C6,hand,malignant_melanoma,+1	OR4C6-70	NM_001004704	exon1	c.C381A	p.P127P	TAAGCCCCTGCAC	.	99.0	42.0	116.0	0.0	.	Atlas-SNP
OR5D16	390144	hgsc.bcm.edu	37	11	55606310	55606310	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR5D16-73	NM_001005496	exon1	c.C83T	p.P28L	AAATTCCCCTCTT	.	73.0	41.0	92.0	0.0	.	Atlas-SNP
OR5W2	390148	hgsc.bcm.edu	37	11	55681212	55681212	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR5W2-70	NM_001001960	exon1	c.C847G	p.P283A	ACATGGGAACCAC	.	53.0	16.0	93.0	0.0	.	Atlas-SNP
OR8H1	219469	hgsc.bcm.edu	37	11	56058500	56058500	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR8H1-71	NM_001005199	exon1	c.C39A	p.I13I	CGTAAGGATGAAG	.	29.0	16.0	41.0	0.0	.	Atlas-SNP
OR8U1	219417	hgsc.bcm.edu	37	11	56143148	56143148	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR8U1-72	NM_001005204	exon1	c.C49A	p.L17I	GTGGGCCTCACAG	.	71.0	44.0	115.0	0.0	.	Atlas-SNP
OR5R1	219479	hgsc.bcm.edu	37	11	56185247	56185247	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR5R1-70	NM_001004744	exon1	c.G462T	p.L154L	GGCAACCAGGAAG	.	94.0	56.0	137.0	0.0	.	Atlas-SNP
OR1S2	219958	hgsc.bcm.edu	37	11	57970677	57970677	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR1S2-69	NM_001004459	exon1	c.G977C	p.X326S	GGGCATCAAAGGG	.	104.0	66.0	170.0	0.0	.	Atlas-SNP
OR5B3	441608	hgsc.bcm.edu	37	11	58170454	58170454	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR5B3-68	NM_001005469	exon1	c.C429T	p.A143A	GCCTATGGCCAGA	.	97.0	57.0	152.0	0.0	.	Atlas-SNP
OR5B2	390190	hgsc.bcm.edu	37	11	58190520	58190520	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR5B2-71	NM_001005566	exon1	c.C215A	p.S72Y	GCTGAGGAGTATC	.	129.0	80.0	190.0	0.0	.	Atlas-SNP
OR5B12	390191	hgsc.bcm.edu	37	11	58207133	58207133	+	Silent	SNP	G	G	A	rs146093633		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR5B12-68	NM_001004733	exon1	c.C492T	p.L164L	GAAGGAGAGCCTG	.	139.0	83.0	161.0	0.0	G|1.000;A|0.000	Atlas-SNP
OR5AN1	390195	hgsc.bcm.edu	37	11	59132631	59132631	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR5AN1-69	NM_001004729	exon1	c.G700T	p.G234C	GCTAAAGGCAGGT	.	112.0	69.0	164.0	0.0	.	Atlas-SNP
NRXN2	9379	hgsc.bcm.edu	37	11	64375221	64375221	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NRXN2-232	NM_138734	exon7	c.C1448T	p.P483L	TTGCGGGGTGACA	.	124.0	58.0	59.0	0.0	.	Atlas-SNP
ZFPL1	7542	hgsc.bcm.edu	37	11	64855517	64855517	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZFPL1-91	NM_006782	exon8	c.G864T	p.R288R	AGGCCGGGCCGCA	.	100.0	41.0	58.0	0.0	.	Atlas-SNP
TMEM151A	256472	hgsc.bcm.edu	37	11	66062127	66062127	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TMEM151A-90	NM_153266	exon2	c.C410A	p.A137E	TGCTGGCGCTGAT	.	93.0	21.0	13.0	0.0	.	Atlas-SNP
CCS	9973	hgsc.bcm.edu	37	11	66366693	66366693	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CCS-90	NM_005125	exon3	c.G219T	p.A73A	GCAGGCGGTACTC	.	90.0	20.0	87.0	0.0	.	Atlas-SNP
RHOD	29984	hgsc.bcm.edu	37	11	66838961	66838961	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RHOD-659	NM_014578	exon5	c.G521A	p.R174Q	CGGCTCGGCTCCA	.	192.0	41.0	38.0	0.0	.	Atlas-SNP
PITPNM1	9600	hgsc.bcm.edu	37	11	67264702	67264702	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PITPNM1-227	NM_001130848	exon14	c.G2146T	p.A716S	ACTCACCCTCCAG	.	240.0	100.0	210.0	0.0	.	Atlas-SNP
FGF3	2248	hgsc.bcm.edu	37	11	69625429	69625429	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FGF3-847	NM_005247	exon3	c.C364A	p.H122N	GCTCGTGGATCCG	.	204.0	104.0	211.0	1.0	.	Atlas-SNP
KRTAP5-9	3846	hgsc.bcm.edu	37	11	71259735	71259735	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_005553	exon1	c.G32T	p.G11V	GCTGTGGCTCCAG	.	331.0	189.0	405.0	1.0	.	Atlas-SNP
UCP2	7351	hgsc.bcm.edu	37	11	73687909	73687909	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	UCP2-90	NM_003355	exon5	c.A491T	p.K164M	ATGGTCTTGTAGG	.	229.0	116.0	281.0	0.0	.	Atlas-SNP
ARRB1	408	hgsc.bcm.edu	37	11	74978733	74978733	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	ARRB1,NS,carcinoma,+1	ARRB1-567	NM_020251	exon14	c.A1084T	p.T362S	CTGGCGTCTCGTT	.	13.0	8.0	19.0	0.0	.	Atlas-SNP
UVRAG	7405	hgsc.bcm.edu	37	11	75563004	75563004	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	UVRAG-229	NM_003369	exon2	c.A194T	p.Y65F	ATACCTACTTTAC	.	64.0	33.0	92.0	0.0	.	Atlas-SNP
TMEM135	65084	hgsc.bcm.edu	37	11	87013485	87013485	+	Splice_Site	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TMEM135-514	NM_001168724	exon7	c.632+1G>T	.	TTCAATGTGAGCT	.	56.0	24.0	105.0	0.0	.	Atlas-SNP
CTSC	1075	hgsc.bcm.edu	37	11	88045699	88045699	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CTSC-90	NM_001814	exon3	c.G342C	p.V114V	AGTGGTCACCTTG	.	61.0	32.0	62.0	0.0	.	Atlas-SNP
GRM5	2915	hgsc.bcm.edu	37	11	88242036	88242036	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GRM5-949	NM_000842	exon9	c.C3267T	p.I1089I	GACTTCGATGGCC	.	71.0	31.0	58.0	0.0	.	Atlas-SNP
NOX4	50507	hgsc.bcm.edu	37	11	89223635	89223635	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NOX4-515	NM_016931	exon2	c.G144C	p.Q48H	CAACATCTGGTGG	.	27.0	17.0	31.0	0.0	.	Atlas-SNP
FAT3	120114	hgsc.bcm.edu	37	11	92534391	92534391	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAT3-73	NM_001008781	exon9	c.G8212A	p.V2738I	CAGAATGTCTGGT	.	56.0	30.0	116.0	0.0	.	Atlas-SNP
FOLR4	390243	hgsc.bcm.edu	37	11	94039684	94039684	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FOLR4-23	NM_001199206	exon2	c.C144T	p.I48I	GTGCATCCCCTGG	.	79.0	39.0	87.0	0.0	.	Atlas-SNP
CNTN5	53942	hgsc.bcm.edu	37	11	99942487	99942487	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CNTN5-366	NM_175566	exon9	c.A1128T	p.Q376H	GAATCAATCAGAT	.	81.0	50.0	127.0	0.0	.	Atlas-SNP
PDGFD	80310	hgsc.bcm.edu	37	11	103818443	103818443	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PDGFD-723	NM_033135	exon4	c.C502T	p.Q168X	CGGGTTGGAAATC	.	43.0	25.0	88.0	0.0	.	Atlas-SNP
PDGFD	80310	hgsc.bcm.edu	37	11	103818444	103818444	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PDGFD-723	NM_033135	exon4	c.C501A	p.F167L	GGGTTGGAAATCT	.	44.0	26.0	88.0	0.0	.	Atlas-SNP
ATM	472	hgsc.bcm.edu	37	11	108236144	108236144	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ATM-3419	NM_000051	exon63	c.G9080T	p.S3027I	TGCTCAGTGTTGG	.	46.0	28.0	67.0	0.0	.	Atlas-SNP
ARHGAP20	57569	hgsc.bcm.edu	37	11	110482045	110482045	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ARHGAP20-230	NM_001258415	exon7	c.G627T	p.M209I	CCCTAGCATTGGT	.	48.0	23.0	99.0	0.0	.	Atlas-SNP
TIMM8B	26521	hgsc.bcm.edu	37	11	111956172	111956172	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TIMM8B-90	NM_012459	exon2	c.G144T	p.M48I	TAACTCCATGAAG	.	42.0	24.0	48.0	0.0	.	Atlas-SNP
BCO2	83875	hgsc.bcm.edu	37	11	112087010	112087010	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BCO2-68	NM_001256398	exon9	c.A1364C	p.E455A	ATGAAGAAGATGG	.	95.0	57.0	128.0	0.0	.	Atlas-SNP
FXYD2	486	hgsc.bcm.edu	37	11	117691574	117691574	+	Missense_Mutation	SNP	C	C	T	rs139816783	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FXYD2-90	NM_021603	exon4	c.G170A	p.R57K	GCTCACCTGCGCT	.	34.0	18.0	43.0	0.0	C|1.000;T|0.000	Atlas-SNP
HSPA8	3312	hgsc.bcm.edu	37	11	122929389	122929389	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HSPA8-654	NM_006597	exon7	c.G1473T	p.V491V	CTTGTCCACAGCA	.	28.0	13.0	61.0	0.0	.	Atlas-SNP
HSPA8	3312	hgsc.bcm.edu	37	11	122929391	122929391	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HSPA8-654	NM_006597	exon7	c.G1471T	p.V491L	TGTCCACAGCAGA	.	28.0	13.0	61.0	0.0	.	Atlas-SNP
OR10S1	219873	hgsc.bcm.edu	37	11	123847992	123847992	+	Missense_Mutation	SNP	C	C	A	rs199683540	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR10S1-70	NM_001004474	exon1	c.G407T	p.R136L	AGATAGCGGTCAT	.	101.0	57.0	119.0	0.0	.	Atlas-SNP
VWA5A	4013	hgsc.bcm.edu	37	11	124015980	124015980	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	VWA5A-92	NM_014622	exon17	c.G2191T	p.V731L	CTGGCCGTGATCT	.	65.0	44.0	125.0	0.0	.	Atlas-SNP
OR8A1	390275	hgsc.bcm.edu	37	11	124440239	124440239	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR8A1-69	NM_001005194	exon1	c.C275T	p.S92F	ACTCCTCCGTCAT	.	84.0	46.0	122.0	0.0	.	Atlas-SNP
NTM	50863	hgsc.bcm.edu	37	11	132204993	132204993	+	Missense_Mutation	SNP	G	G	T	rs145004908	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NTM-95	NM_001144058	exon8	c.G1021T	p.V341F	GGCTGCGTCTGGC	.	43.0	27.0	57.0	0.0	G|1.000;A|0.000	Atlas-SNP
NLRP10	338322	hgsc.bcm.edu	37	11	7981838	7981839	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NLRP10-209	NM_176821	exon2	c.1321_1322insA	p.P441fs	.	.	54.0	31.0	66.0	0.0	.	Atlas-Indel
FAT3	120114	hgsc.bcm.edu	37	11	92616454	92616455	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAT3-73	NM_001008781	exon23	c.12832_12833insG	p.R4278fs	.	.	85.0	38.0	59.0	0.0	.	Atlas-Indel
CACNA2D4	93589	hgsc.bcm.edu	37	12	1994182	1994182	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CACNA2D4-23	NM_172364	exon10	c.C1129A	p.L377M	CTCTCAGGGCTTG	.	113.0	73.0	132.0	0.0	.	Atlas-SNP
FGF6	2251	hgsc.bcm.edu	37	12	4554551	4554551	+	Silent	SNP	G	G	C	rs202212518	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FGF6-659	NM_020996	exon1	c.C186G	p.R62R	CCCGGCGCGAGAC	.	86.0	52.0	69.0	0.0	G|0.999;A|0.000	Atlas-SNP
KCNA6	3742	hgsc.bcm.edu	37	12	4920365	4920365	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KCNA6-93	NM_002235	exon1	c.G1158A	p.G386G	CATCGGGGTCATC	.	267.0	176.0	275.0	1.0	.	Atlas-SNP
VWF	7450	hgsc.bcm.edu	37	12	6078387	6078387	+	Missense_Mutation	SNP	G	G	T	rs192262780		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	VWF-163	NM_000552	exon45	c.C7719A	p.S2573R	GCGACAGCTTGGG	.	155.0	102.0	173.0	0.0	G|0.999;T|0.000	Atlas-SNP
VWF	7450	hgsc.bcm.edu	37	12	6125362	6125362	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	VWF-163	NM_000552	exon31	c.C5348G	p.S1783X	ATTTCTGAAGTCA	.	286.0	74.0	227.0	0.0	.	Atlas-SNP
CD163L1	283316	hgsc.bcm.edu	37	12	7528358	7528358	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CD163L1-100	NM_174941	exon10	c.C2624T	p.P875L	ACAATGGGGCATA	.	135.0	95.0	126.0	0.0	.	Atlas-SNP
C3AR1	719	hgsc.bcm.edu	37	12	8212382	8212382	+	Missense_Mutation	SNP	G	G	C	rs61736561	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	C3AR1-227	NM_004054	exon2	c.C400G	p.R134G	CATTGCGATGATT	.	122.0	76.0	151.0	0.0	G|0.986;A|0.014	Atlas-SNP
MFAP5	8076	hgsc.bcm.edu	37	12	8813475	8813475	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MFAP5-577	NM_003480	exon3	c.C78A	p.V26V	ACTATTGACCCCC	.	58.0	35.0	77.0	0.0	.	Atlas-SNP
STYK1	55359	hgsc.bcm.edu	37	12	10782211	10782211	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	STYK1-1379	NM_018423	exon6	c.G514T	p.G172W	GTTTCCCCAGGTA	.	64.0	33.0	91.0	0.0	.	Atlas-SNP
PDE3A	5139	hgsc.bcm.edu	37	12	20523173	20523173	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PDE3A-94	NM_000921	exon1	c.G955T	p.E319X	CCGAGGGAACAGG	.	37.0	25.0	53.0	0.0	.	Atlas-SNP
SLCO1C1	53919	hgsc.bcm.edu	37	12	20886031	20886031	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLCO1C1-97	NM_017435	exon10	c.T1375A	p.Y459N	GTCTCCTACCAAG	.	49.0	30.0	51.0	0.0	.	Atlas-SNP
SOX5	6660	hgsc.bcm.edu	37	12	23893815	23893815	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SOX5-655	NM_152989	exon8	c.C688A	p.Q230K	GTTGCTGCTTGGC	.	50.0	33.0	74.0	0.0	.	Atlas-SNP
MANSC4	100287284	hgsc.bcm.edu	37	12	27915672	27915672	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001146221	exon3	c.A1022T	p.X341L	TTTTACTATGAAG	.	60.0	33.0	43.0	0.0	.	Atlas-SNP
CCDC91	55297	hgsc.bcm.edu	37	12	28605587	28605587	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CCDC91-90	NM_018318	exon10	c.G1101C	p.Q367H	AAGTCAGGTTAGT	.	35.0	14.0	53.0	0.0	.	Atlas-SNP
OVCH1	341350	hgsc.bcm.edu	37	12	29598275	29598275	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OVCH1-210	NM_183378	exon23	c.G2817T	p.R939S	TGTCACCCTCACC	.	52.0	34.0	64.0	0.0	.	Atlas-SNP
OVCH1	341350	hgsc.bcm.edu	37	12	29607850	29607850	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OVCH1-210	NM_183378	exon21	c.G2454T	p.Q818H	ATTTGTCTGAAGT	.	60.0	36.0	83.0	0.0	.	Atlas-SNP
OVCH1	341350	hgsc.bcm.edu	37	12	29628092	29628092	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OVCH1-210	NM_183378	exon14	c.C1502A	p.S501X	AATATTGAAGTGA	.	103.0	70.0	151.0	0.0	.	Atlas-SNP
TMTC1	83857	hgsc.bcm.edu	37	12	29908758	29908758	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TMTC1-90	NM_001193451	exon4	c.G615T	p.L205F	GAGCAGCAAGAAG	.	82.0	47.0	95.0	0.0	.	Atlas-SNP
KIAA1551	55196	hgsc.bcm.edu	37	12	32136907	32136907	+	Silent	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_018169	exon4	c.A3018T	p.T1006T	AAGCACAGCTAAC	.	54.0	36.0	53.0	0.0	.	Atlas-SNP
KIF21A	55605	hgsc.bcm.edu	37	12	39695356	39695356	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIF21A-97	NM_001173465	exon33	c.G4698T	p.V1566V	CTCTCCCACTGGC	.	171.0	126.0	179.0	0.0	.	Atlas-SNP
CNTN1	1272	hgsc.bcm.edu	37	12	41463834	41463834	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CNTN1-1149	NM_175038	exon22	c.C3021A	p.F1007L	GGAATTCTGAATG	.	72.0	49.0	85.0	0.0	.	Atlas-SNP
ADAMTS20	80070	hgsc.bcm.edu	37	12	43821221	43821221	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADAMTS20-795	NM_025003	exon27	c.G3997T	p.D1333Y	TTTCATCCTGGCA	.	94.0	56.0	102.0	0.0	.	Atlas-SNP
PUS7L	83448	hgsc.bcm.edu	37	12	44142372	44142372	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PUS7L-91	NM_001098615	exon3	c.G951T	p.A317A	ACCAATCGCTTCA	.	38.0	26.0	40.0	0.0	.	Atlas-SNP
TWF1	5756	hgsc.bcm.edu	37	12	44190794	44190794	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TWF1-797	NM_001242397	exon9	c.G888T	p.M296I	TACATCCATTTGT	.	58.0	41.0	91.0	0.0	.	Atlas-SNP
ANO6	196527	hgsc.bcm.edu	37	12	45742042	45742042	+	Missense_Mutation	SNP	G	G	C	rs145491348	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ANO6-516	NM_001204803	exon6	c.G640C	p.D214H	ATGAATGATTTTT	.	119.0	29.0	137.0	0.0	G|1.000;T|0.000	Atlas-SNP
NCKAP5L	57701	hgsc.bcm.edu	37	12	50195681	50195681	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NCKAP5L-68	NM_001037806	exon6	c.A301T	p.S101C	GGGCACTCAGCAT	.	168.0	117.0	176.0	0.0	.	Atlas-SNP
FAM186A	121006	hgsc.bcm.edu	37	12	50746537	50746537	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM186A-68	NM_001145475	exon4	c.G4078C	p.G1360R	GGATCCCCAGTTC	.	454.0	374.0	271.0	2.0	.	Atlas-SNP
KRT74	121391	hgsc.bcm.edu	37	12	52967215	52967215	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KRT74-92	NM_175053	exon1	c.C347T	p.T116I	TTGACAGTGACCT	.	103.0	49.0	122.0	0.0	.	Atlas-SNP
IGFBP6	3489	hgsc.bcm.edu	37	12	53494882	53494882	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IGFBP6-523	NM_002178	exon3	c.C538T	p.R180X	GTCTACCGAGGGG	.	125.0	84.0	135.0	0.0	.	Atlas-SNP
ERBB3	2065	hgsc.bcm.edu	37	12	56487188	56487188	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ERBB3-1403	NM_001982	exon12	c.C1334T	p.S445F	TCCGATCCCTGAA	.	115.0	27.0	94.0	0.0	.	Atlas-SNP
LGR5	8549	hgsc.bcm.edu	37	12	71972663	71972663	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LGR5-527	NM_003667	exon15	c.C1360G	p.H454D	GGAAATCATGCCT	.	99.0	61.0	116.0	0.0	.	Atlas-SNP
LGR5	8549	hgsc.bcm.edu	37	12	71978418	71978418	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LGR5-527	NM_003667	exon18	c.C2628G	p.I876M	CAGCATCACTTAT	.	82.0	46.0	78.0	0.0	.	Atlas-SNP
TRHDE	29953	hgsc.bcm.edu	37	12	72680494	72680494	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TRHDE-93	NM_013381	exon2	c.T813G	p.H271Q	TACACATGCCAGA	.	107.0	67.0	128.0	0.0	.	Atlas-SNP
SLC6A15	55117	hgsc.bcm.edu	37	12	85255765	85255765	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC6A15-93	NM_182767	exon12	c.C1839G	p.S613R	TGGATAGCTCAGA	.	42.0	18.0	97.0	0.0	.	Atlas-SNP
TMPO	7112	hgsc.bcm.edu	37	12	98940166	98940166	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TMPO-93	NM_001032283	exon8	c.A1020G	p.V340V	AAGAGTAGAAAGG	.	105.0	61.0	118.0	0.0	.	Atlas-SNP
SLC5A8	160728	hgsc.bcm.edu	37	12	101603553	101603553	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC5A8-90	NM_145913	exon1	c.C74A	p.S25X	GCGGCCGAGATGA	.	94.0	68.0	57.0	0.0	.	Atlas-SNP
MYBPC1	4604	hgsc.bcm.edu	37	12	102055036	102055036	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYBPC1-94	NM_001254721	exon17	c.C1896A	p.I632I	TCCAATCCTAGGT	.	54.0	31.0	87.0	0.0	.	Atlas-SNP
MYBPC1	4604	hgsc.bcm.edu	37	12	102055037	102055037	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYBPC1-94	NM_001254721	exon17	c.C1897A	p.L633I	CCAATCCTAGGTA	.	54.0	31.0	87.0	0.0	.	Atlas-SNP
ALDH1L2	160428	hgsc.bcm.edu	37	12	105424132	105424132	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ALDH1L2-91	NM_001034173	exon21	c.C2486A	p.P829H	ATAATAGGCCCAA	.	84.0	54.0	82.0	0.0	.	Atlas-SNP
TRPV4	59341	hgsc.bcm.edu	37	12	110231758	110231758	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TRPV4-94	NM_021625	exon9	c.G1561T	p.G521W	GGACCCCAGTGAA	.	241.0	182.0	251.0	0.0	.	Atlas-SNP
HECTD4	283450	hgsc.bcm.edu	37	12	112701980	112701980	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001109662	exon17	c.C2224G	p.Q742E	GATTCTGAACTGC	.	103.0	21.0	109.0	0.0	.	Atlas-SNP
RPH3A	22895	hgsc.bcm.edu	37	12	113304642	113304642	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RPH3A-519	NM_014954	exon6	c.G429A	p.R143R	GCAGAGGGAGGTG	.	133.0	88.0	123.0	0.0	.	Atlas-SNP
TBX3	6926	hgsc.bcm.edu	37	12	115112157	115112157	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TBX3-93	NM_005996	exon6	c.G1523C	p.G508A	GCGCCCCCCATGG	.	103.0	49.0	57.0	0.0	.	Atlas-SNP
SUDS3	64426	hgsc.bcm.edu	37	12	118841234	118841234	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SUDS3-90	NM_022491	exon10	c.G715T	p.E239X	TCTCCTGAGCACT	.	50.0	34.0	41.0	0.0	.	Atlas-SNP
SRRM4	84530	hgsc.bcm.edu	37	12	119594333	119594333	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SRRM4-2	NM_194286	exon13	c.C1566A	p.P522P	TCGGCCCAGCCCC	.	205.0	119.0	176.0	1.0	.	Atlas-SNP
CCDC60	160777	hgsc.bcm.edu	37	12	119926594	119926594	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CCDC60-93	NM_178499	exon5	c.C480A	p.L160L	TGCTCTCCACTGG	.	300.0	218.0	236.0	0.0	.	Atlas-SNP
WDR66	144406	hgsc.bcm.edu	37	12	122413555	122413555	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	WDR66-92	NM_144668	exon19	c.C2970T	p.V990V	TTTTGTCATGAGA	.	160.0	32.0	112.0	0.0	.	Atlas-SNP
DNAH10	196385	hgsc.bcm.edu	37	12	124335466	124335466	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DNAH10-95	NM_207437	exon34	c.G5780T	p.R1927L	ACTCCCGCATGGG	.	98.0	74.0	79.0	0.0	.	Atlas-SNP
MED13L	23389	hgsc.bcm.edu	37	12	116444164	116444165	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MED13L-232	NM_015335	exon12	c.2291_2292insG	p.P764fs	.	.	127.0	77.0	157.0	0.0	.	Atlas-Indel
RNF17	56163	hgsc.bcm.edu	37	13	25363494	25363494	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RNF17-228	NM_001184993	exon8	c.G792T	p.R264R	TATCCGGACTTTG	.	61.0	21.0	120.0	0.0	.	Atlas-SNP
CDK8	1024	hgsc.bcm.edu	37	13	26923272	26923272	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CDK8-1023	NM_001260	exon3	c.G268T	p.D90Y	CATGCTGATAGGA	.	93.0	33.0	127.0	0.0	.	Atlas-SNP
MTUS2	23281	hgsc.bcm.edu	37	13	29599201	29599201	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MTUS2-218	NM_001033602	exon1	c.G396T	p.Q132H	CCTGCAGACCACG	.	86.0	34.0	153.0	0.0	.	Atlas-SNP
MTUS2	23281	hgsc.bcm.edu	37	13	29600623	29600623	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MTUS2-218	NM_001033602	exon1	c.G1818T	p.G606G	CAGTGGGATCCCC	.	74.0	24.0	122.0	0.0	.	Atlas-SNP
MTUS2	23281	hgsc.bcm.edu	37	13	30054476	30054476	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MTUS2-218	NM_001033602	exon8	c.G3404C	p.S1135T	TGCTGAGCATCCG	.	112.0	40.0	180.0	0.0	.	Atlas-SNP
DCLK1	9201	hgsc.bcm.edu	37	13	36699966	36699966	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DCLK1-826	NM_004734	exon2	c.G309T	p.Q103H	CACTCCCTGGGGC	.	111.0	31.0	155.0	0.0	.	Atlas-SNP
FREM2	341640	hgsc.bcm.edu	37	13	39264618	39264618	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FREM2-100	NM_207361	exon1	c.G3137T	p.G1046V	GAATTGGTGGCAA	.	53.0	21.0	96.0	0.0	.	Atlas-SNP
NAA16	79612	hgsc.bcm.edu	37	13	41932560	41932560	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NAA16-90	NM_024561	exon11	c.G1208T	p.S403I	TTGCTAGTACTCC	.	50.0	13.0	100.0	0.0	.	Atlas-SNP
ENOX1	55068	hgsc.bcm.edu	37	13	43896519	43896519	+	Splice_Site	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ENOX1-92	NM_001242863	exon12	c.1261+1G>T	.	GCATTACCTGATT	.	73.0	28.0	188.0	0.0	.	Atlas-SNP
TSC22D1	8848	hgsc.bcm.edu	37	13	45147767	45147767	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TSC22D1-90	NM_183422	exon1	c.C2444T	p.S815L	TGCTGTGAAACAA	.	86.0	28.0	171.0	0.0	.	Atlas-SNP
LRCH1	23143	hgsc.bcm.edu	37	13	47297444	47297444	+	Missense_Mutation	SNP	G	G	T	rs188820612	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LRCH1-91	NM_001164211	exon17	c.G1848T	p.E616D	GAAAGAGCTGGTG	.	30.0	11.0	62.0	0.0	G|0.999;A|0.000	Atlas-SNP
HTR2A	3356	hgsc.bcm.edu	37	13	47469863	47469863	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HTR2A-519	NM_000621	exon2	c.G179T	p.C60F	GAGAGGCACCCTT	.	129.0	36.0	190.0	0.0	.	Atlas-SNP
ITM2B	9445	hgsc.bcm.edu	37	13	48830474	48830474	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ITM2B-90	NM_021999	exon3	c.G408T	p.E136D	CCCAGAGTTTGCA	.	53.0	12.0	82.0	0.0	.	Atlas-SNP
PCDH8	5100	hgsc.bcm.edu	37	13	53422274	53422274	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDH8-153	NM_032949	exon1	c.C298A	p.P100T	ACTGCGGGGCCTG	.	68.0	21.0	20.0	0.0	.	Atlas-SNP
PCDH17	27253	hgsc.bcm.edu	37	13	58208760	58208760	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDH17-97	NM_001040429	exon1	c.C2080G	p.R694G	GTACCACGGGTGA	.	164.0	41.0	253.0	0.0	.	Atlas-SNP
PCDH17	27253	hgsc.bcm.edu	37	13	58240856	58240856	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDH17-97	NM_001040429	exon3	c.G2686T	p.D896Y	GACAGTGATCAGG	.	119.0	42.0	174.0	0.0	.	Atlas-SNP
PCDH9	5101	hgsc.bcm.edu	37	13	67205483	67205483	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDH9-96	NM_020403	exon3	c.G3097T	p.G1033C	CTAGACCACTGTC	.	64.0	17.0	129.0	0.0	.	Atlas-SNP
KLHL1	57626	hgsc.bcm.edu	37	13	70281793	70281793	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KLHL1-90	NM_020866	exon10	c.G2151T	p.M717I	GGATTCCATAGTG	.	92.0	23.0	150.0	0.0	.	Atlas-SNP
KLHL1	57626	hgsc.bcm.edu	37	13	70281794	70281794	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KLHL1-90	NM_020866	exon10	c.T2150C	p.M717T	GATTCCATAGTGT	.	93.0	22.0	152.0	0.0	.	Atlas-SNP
DACH1	1602	hgsc.bcm.edu	37	13	72063190	72063190	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DACH1-135	NM_080759	exon7	c.C1667T	p.P556L	GGAGATGGAAAAC	.	56.0	13.0	110.0	0.0	.	Atlas-SNP
DACH1	1602	hgsc.bcm.edu	37	13	72063191	72063191	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DACH1-135	NM_080759	exon7	c.C1666A	p.P556T	GAGATGGAAAACC	.	55.0	13.0	111.0	0.0	.	Atlas-SNP
TBC1D4	9882	hgsc.bcm.edu	37	13	75915278	75915278	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TBC1D4-95	NM_014832	exon7	c.A1594G	p.I532V	CCCCGATGTGCAC	.	106.0	28.0	133.0	0.0	.	Atlas-SNP
IRG1	730249	hgsc.bcm.edu	37	13	77531719	77531719	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001258406	exon4	c.G1033T	p.V345F	ATCACTGTCCCCT	.	73.0	17.0	78.0	0.0	.	Atlas-SNP
MYCBP2	23077	hgsc.bcm.edu	37	13	77870754	77870754	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYCBP2-236	NM_015057	exon2	c.A358G	p.K120E	TCACTTTTGATTT	.	13.0	4.0	22.0	0.0	.	Atlas-SNP
EDNRB	1910	hgsc.bcm.edu	37	13	78492683	78492683	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EDNRB-522	NM_001201397	exon2	c.G296C	p.G99A	GCGCGTCCGCACA	.	79.0	24.0	93.0	0.0	.	Atlas-SNP
RNF219	79596	hgsc.bcm.edu	37	13	79191112	79191112	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RNF219-135	NM_024546	exon6	c.G784T	p.E262X	TCTCTTCACTTGA	.	73.0	18.0	107.0	0.0	.	Atlas-SNP
SLITRK1	114798	hgsc.bcm.edu	37	13	84455469	84455469	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLITRK1-94	NM_052910	exon1	c.C174A	p.S58S	AAACTGGGAAGTC	.	37.0	9.0	70.0	0.0	.	Atlas-SNP
SLITRK6	84189	hgsc.bcm.edu	37	13	86368998	86368998	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLITRK6-137	NM_032229	exon2	c.C1646A	p.P549H	TGCCCGGGGGAAG	.	84.0	14.0	132.0	0.0	.	Atlas-SNP
GPC5	2262	hgsc.bcm.edu	37	13	92051320	92051320	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPC5-519	NM_004466	exon1	c.C20A	p.P7H	CCTGGCCCGTGGG	.	115.0	26.0	100.0	0.0	.	Atlas-SNP
GPC5	2262	hgsc.bcm.edu	37	13	92345810	92345810	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPC5-519	NM_004466	exon3	c.G695T	p.G232V	ATCTGGGCATTGA	.	70.0	21.0	125.0	0.0	.	Atlas-SNP
DCT	1638	hgsc.bcm.edu	37	13	95121092	95121092	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DCT-94	NM_001922	exon2	c.G503T	p.G168V	TTGGGCCCAAGCA	.	69.0	17.0	101.0	0.0	.	Atlas-SNP
HS6ST3	266722	hgsc.bcm.edu	37	13	96743551	96743551	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	HS6ST3,nipple,malignant_melanoma,+2	HS6ST3-92	NM_153456	exon1	c.C435G	p.R145R	AGGGCGCGACGTG	.	122.0	38.0	183.0	0.0	.	Atlas-SNP
NALCN	259232	hgsc.bcm.edu	37	13	101736110	101736110	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NALCN-167	NM_052867	exon31	c.A3535C	p.K1179Q	GGCTCTTCAGGTC	.	30.0	7.0	73.0	0.0	.	Atlas-SNP
NALCN	259232	hgsc.bcm.edu	37	13	101755576	101755576	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NALCN-167	NM_052867	exon26	c.C3004A	p.Q1002K	TCATCTGGGGCAC	.	51.0	16.0	65.0	0.0	.	Atlas-SNP
NALCN	259232	hgsc.bcm.edu	37	13	102029346	102029346	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NALCN-167	NM_052867	exon5	c.G437T	p.R146L	AGTGGCCGTGGAA	.	91.0	19.0	103.0	0.0	.	Atlas-SNP
CCDC168	643677	hgsc.bcm.edu	37	13	103388356	103388356	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001146197	exon4	c.C14691A	p.P4897P	CCTTTTGGGGAGT	.	68.0	20.0	83.0	0.0	.	Atlas-SNP
CCDC168	643677	hgsc.bcm.edu	37	13	103391132	103391132	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001146197	exon4	c.C11915A	p.P3972H	GCAAAAGGTTTGC	.	24.0	4.0	65.0	0.0	.	Atlas-SNP
CCDC168	643677	hgsc.bcm.edu	37	13	103398334	103398334	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001146197	exon4	c.C4713T	p.G1571G	TATTAAGCCATCG	.	87.0	12.0	118.0	0.0	.	Atlas-SNP
COL4A1	1282	hgsc.bcm.edu	37	13	110850953	110850953	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	COL4A1-654	NM_001845	exon21	c.T1146C	p.G382G	AGGGGCACCAGCC	.	38.0	12.0	67.0	0.0	.	Atlas-SNP
ATP11A	23250	hgsc.bcm.edu	37	13	113508734	113508734	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ATP11A-138	NM_015205	exon19	c.G2133C	p.L711L	GCTGCTGGAGCTG	.	101.0	23.0	115.0	0.0	.	Atlas-SNP
PCID2	55795	hgsc.bcm.edu	37	13	113839829	113839829	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCID2-90	NM_018386	exon8	c.G513T	p.L171L	GTTCACCAGAAAC	.	42.0	9.0	55.0	0.0	.	Atlas-SNP
KLHL1	57626	hgsc.bcm.edu	37	13	70681348	70681349	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KLHL1-90	NM_020866	exon1	c.484_485del	p.162_162del	.	.	149.0	33.0	176.0	0.0	.	Pindel
OR11G2	390439	hgsc.bcm.edu	37	14	20665906	20665906	+	Missense_Mutation	SNP	C	C	A	rs77997988		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR11G2-70	NM_001005503	exon1	c.C412A	p.Q138K	TTCCTCCAGTTCT	.	67.0	38.0	107.0	0.0	.	Atlas-SNP
TEP1	7011	hgsc.bcm.edu	37	14	20845643	20845643	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TEP1-95	NM_007110	exon41	c.G5884T	p.G1962W	GAGCCCCCTGGGA	.	54.0	30.0	81.0	0.0	.	Atlas-SNP
MYH6	4624	hgsc.bcm.edu	37	14	23876252	23876252	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYH6-94	NM_002471	exon3	c.G181C	p.A61P	TTTCAGCAATGAC	.	87.0	59.0	92.0	0.0	.	Atlas-SNP
RNF31	55072	hgsc.bcm.edu	37	14	24617561	24617561	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RNF31-90	NM_017999	exon3	c.A434C	p.Q145P	AGCACCAGGTTGC	.	115.0	57.0	195.0	0.0	.	Atlas-SNP
EAPP	55837	hgsc.bcm.edu	37	14	35005309	35005309	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EAPP-91	NM_018453	exon2	c.C247T	p.L83L	TTCCCAGAGAGGA	.	25.0	17.0	36.0	0.0	.	Atlas-SNP
FAM177A1	283635	hgsc.bcm.edu	37	14	35548204	35548204	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM177A1-226	NM_173607	exon4	c.G478C	p.D160H	GCCATTGATGAAT	.	60.0	16.0	96.0	0.0	.	Atlas-SNP
LRFN5	145581	hgsc.bcm.edu	37	14	42356483	42356483	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LRFN5-97	NM_152447	exon3	c.G655C	p.A219P	CAGCGAGCTCAGG	.	102.0	57.0	121.0	0.0	.	Atlas-SNP
LRFN5	145581	hgsc.bcm.edu	37	14	42356830	42356830	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LRFN5-97	NM_152447	exon3	c.T1002A	p.S334S	AAGATCTCTGGTG	.	78.0	37.0	130.0	0.0	.	Atlas-SNP
FSCB	84075	hgsc.bcm.edu	37	14	44974595	44974595	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FSCB-587	NM_032135	exon1	c.G1596T	p.E532D	AGGAGCCTCTATA	.	35.0	22.0	31.0	0.0	.	Atlas-SNP
MIS18BP1	55320	hgsc.bcm.edu	37	14	45693590	45693590	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MIS18BP1-90	NM_018353	exon11	c.G2200A	p.E734K	TTTGTTCCTTTTC	.	41.0	24.0	47.0	0.0	.	Atlas-SNP
MIS18BP1	55320	hgsc.bcm.edu	37	14	45711445	45711445	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MIS18BP1-90	NM_018353	exon4	c.G935C	p.G312A	GAAGTCCCTTCTG	.	57.0	28.0	64.0	0.0	.	Atlas-SNP
MDGA2	161357	hgsc.bcm.edu	37	14	47342647	47342647	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MDGA2-95	NM_182830	exon14	c.G1847C	p.G616A	TGTTGTCCATACA	.	33.0	16.0	71.0	0.0	.	Atlas-SNP
ABHD12B	145447	hgsc.bcm.edu	37	14	51355545	51355545	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ABHD12B-153	NM_001206673	exon9	c.G704A	p.C235Y	AAGGATGCCCAGT	.	31.0	18.0	55.0	0.0	.	Atlas-SNP
NID2	22795	hgsc.bcm.edu	37	14	52485862	52485862	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NID2-158	NM_007361	exon14	c.G2945T	p.W982L	ACGCACCAGCAGA	.	177.0	111.0	180.0	1.0	.	Atlas-SNP
NID2	22795	hgsc.bcm.edu	37	14	52486816	52486816	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NID2-158	NM_007361	exon13	c.C2755A	p.Q919K	CGGGTTGACAACG	.	124.0	68.0	173.0	0.0	.	Atlas-SNP
ARID4A	5926	hgsc.bcm.edu	37	14	58831980	58831980	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ARID4A-231	NM_023000	exon20	c.G3173C	p.C1058S	GTACCTGTAGTAT	.	81.0	52.0	119.0	0.0	.	Atlas-SNP
C14orf39	317761	hgsc.bcm.edu	37	14	60933637	60933637	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	C14orf39-94	NM_174978	exon10	c.C893A	p.A298E	ATACCTGCAACTC	.	17.0	10.0	17.0	0.0	.	Atlas-SNP
AKAP5	9495	hgsc.bcm.edu	37	14	64935226	64935226	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	AKAP5-226	NM_004857	exon2	c.G114C	p.K38N	CTTCAAGAGAAGA	.	276.0	41.0	188.0	0.0	.	Atlas-SNP
PLEKHG3	26030	hgsc.bcm.edu	37	14	65209938	65209938	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PLEKHG3-91	NM_015549	exon15	c.C3009G	p.S1003S	TGCCTCCCGCGAT	.	111.0	24.0	13.0	0.0	.	Atlas-SNP
VTI1B	10490	hgsc.bcm.edu	37	14	68120200	68120200	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	VTI1B-90	NM_006370	exon5	c.G556T	p.E186X	AGTTTTCACTTGT	.	50.0	8.0	65.0	0.0	.	Atlas-SNP
SLC8A3	6547	hgsc.bcm.edu	37	14	70634023	70634023	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC8A3-225	NM_033262	exon2	c.G1117T	p.A373S	CTGCTGCATGTTT	.	131.0	87.0	169.0	0.0	.	Atlas-SNP
ADAM21	8747	hgsc.bcm.edu	37	14	70926120	70926120	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADAM21-92	NM_003813	exon2	c.T1904A	p.L635H	TCTGCCTTCCTGA	.	398.0	180.0	435.0	1.0	.	Atlas-SNP
ADAM20	8748	hgsc.bcm.edu	37	14	70990144	70990144	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADAM20-226	NM_003814	exon2	c.G1481T	p.G494V	GCAGCCCCAGGAT	.	120.0	43.0	97.0	0.0	.	Atlas-SNP
PAPLN	89932	hgsc.bcm.edu	37	14	73711367	73711367	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PAPLN-70	NM_173462	exon3	c.C70A	p.R24R	GTGAGGCGGCAGA	.	140.0	85.0	122.0	0.0	.	Atlas-SNP
NUMB	8650	hgsc.bcm.edu	37	14	73750814	73750814	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NUMB-1062	NM_001005744	exon10	c.G924A	p.K308K	ATCAGTCTTCCTC	.	187.0	41.0	195.0	0.0	.	Atlas-SNP
TTLL5	23093	hgsc.bcm.edu	37	14	76149969	76149969	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TTLL5-92	NM_015072	exon5	c.C341T	p.S114F	CCCTCTCTGAAGC	.	122.0	28.0	121.0	0.0	.	Atlas-SNP
PTPN21	11099	hgsc.bcm.edu	37	14	88971713	88971713	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PTPN21-230	NM_007039	exon5	c.G451T	p.D151Y	CAAAATCCGCTAT	.	123.0	8.0	153.0	0.0	.	Atlas-SNP
SERPINA4	5267	hgsc.bcm.edu	37	14	95030149	95030149	+	Silent	SNP	C	C	G	rs141308668	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SERPINA4-230	NM_006215	exon2	c.C330G	p.T110T	CCTCACCGAGCTG	.	78.0	36.0	72.0	0.0	C|1.000;T|0.000	Atlas-SNP
SERPINA5	5104	hgsc.bcm.edu	37	14	95054239	95054239	+	Silent	SNP	G	G	A	rs146244413	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SERPINA5-652	NM_000624	exon3	c.G540A	p.T180T	GCAAACGAAGGGC	.	353.0	233.0	403.0	1.0	G|0.999;A|0.001	Atlas-SNP
SYNE3	161176	hgsc.bcm.edu	37	14	95916424	95916424	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_152592	exon7	c.G1293A	p.A431A	CAGCCTCGCGCTC	.	179.0	36.0	120.0	0.0	.	Atlas-SNP
ATG2B	55102	hgsc.bcm.edu	37	14	96813577	96813577	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ATG2B-93	NM_018036	exon2	c.G264T	p.Q88H	ATTATCCTGCAGT	.	71.0	46.0	97.0	0.0	.	Atlas-SNP
PAPOLA	10914	hgsc.bcm.edu	37	14	97029218	97029218	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PAPOLA-68	NM_032632	exon21	c.G2130C	p.L710L	TTCTCTGTTGGCC	.	25.0	13.0	38.0	0.0	.	Atlas-SNP
RTL1	388015	hgsc.bcm.edu	37	14	101351118	101351118	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RTL1-46	NM_001134888	exon1	c.A8G	p.E3G	GAGGGTTCTATCA	.	100.0	66.0	99.0	0.0	.	Atlas-SNP
MARK3	4140	hgsc.bcm.edu	37	14	103931918	103931918	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MARK3-360	NM_001128919	exon8	c.G565A	p.D189N	GATGCCGATATGA	.	55.0	13.0	56.0	0.0	.	Atlas-SNP
KIF26A	26153	hgsc.bcm.edu	37	14	104641745	104641745	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIF26A-24	NM_015656	exon12	c.G2620A	p.G874R	GCCCGAGGGGGCC	.	120.0	26.0	22.0	0.0	.	Atlas-SNP
KIF26A	26153	hgsc.bcm.edu	37	14	104641876	104641876	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIF26A-24	NM_015656	exon12	c.C2751T	p.A917A	CAAGGCCATTGTC	.	62.0	11.0	32.0	0.0	.	Atlas-SNP
OR4M2	390538	hgsc.bcm.edu	37	15	22368578	22368578	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR4M2-69	NM_001004719	exon1	c.G3T	p.M1I	AGAAATGGAAACT	.	81.0	11.0	99.0	0.0	.	Atlas-SNP
OR4M2	390538	hgsc.bcm.edu	37	15	22368613	22368613	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR4M2-69	NM_001004719	exon1	c.T38C	p.V13A	AATTTGTTCTCAC	.	133.0	34.0	176.0	0.0	.	Atlas-SNP
OR4N4	283694	hgsc.bcm.edu	37	15	22382866	22382866	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR4N4-73	NM_001005241	exon1	c.T394G	p.C132G	CTGCACTGTTCAA	.	271.0	78.0	290.0	0.0	.	Atlas-SNP
TUBGCP5	114791	hgsc.bcm.edu	37	15	22855078	22855078	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TUBGCP5-91	NM_052903	exon13	c.G1539T	p.T513T	TTACACGTTATAT	.	273.0	32.0	177.0	0.0	.	Atlas-SNP
GABRB3	2562	hgsc.bcm.edu	37	15	26866612	26866612	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GABRB3-518	NM_021912	exon4	c.C310G	p.L104V	GGTTGAGAGGGAT	.	74.0	10.0	85.0	0.0	.	Atlas-SNP
GABRA5	2558	hgsc.bcm.edu	37	15	27182468	27182468	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GABRA5-91	NM_001165037	exon8	c.C717A	p.T239T	CAGCACCAGCACA	.	154.0	86.0	118.0	0.0	.	Atlas-SNP
GABRG3	2567	hgsc.bcm.edu	37	15	27572125	27572125	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001270873	exon4	c.C440A	p.P147H	CCACACCCAATCA	.	106.0	46.0	116.0	0.0	.	Atlas-SNP
APBA2	321	hgsc.bcm.edu	37	15	29346205	29346205	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	APBA2-90	NM_005503	exon3	c.G118T	p.G40C	TTGGAGGGCTATG	.	289.0	74.0	234.0	0.0	.	Atlas-SNP
TRPM1	4308	hgsc.bcm.edu	37	15	31295069	31295069	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TRPM1-94	NM_001252020	exon27	c.G3885T	p.T1295T	AAGATACGTTGCC	.	68.0	36.0	78.0	0.0	.	Atlas-SNP
FMN1	342184	hgsc.bcm.edu	37	15	33300216	33300216	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FMN1-23	NM_001103184	exon3	c.A1553T	p.Q518L	CATACCTGCAGGT	.	65.0	26.0	43.0	0.0	.	Atlas-SNP
RYR3	6263	hgsc.bcm.edu	37	15	34111987	34111987	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RYR3-520	NM_001243996	exon76	c.C10722A	p.S3574S	CACCTCCTATTCC	.	103.0	26.0	90.0	0.0	.	Atlas-SNP
GPR176	11245	hgsc.bcm.edu	37	15	40094026	40094026	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPR176-519	NM_007223	exon3	c.G855T	p.L285L	GACGACCAGGGTG	.	149.0	40.0	159.0	0.0	.	Atlas-SNP
INO80	54617	hgsc.bcm.edu	37	15	41272438	41272438	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	INO80-72	NM_017553	exon36	c.C4654T	p.P1552S	CAGAGGGGTTGGT	.	70.0	16.0	67.0	0.0	.	Atlas-SNP
MAPKBP1	23005	hgsc.bcm.edu	37	15	42116197	42116197	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MAPKBP1-589	NM_014994	exon29	c.C4151T	p.P1384L	CACCCCCTGAGAA	.	41.0	8.0	41.0	0.0	.	Atlas-SNP
SPTBN5	51332	hgsc.bcm.edu	37	15	42158294	42158294	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SPTBN5-91	NM_016642	exon38	c.G6659T	p.R2220L	AAGTTCCGCCTGT	.	68.0	11.0	56.0	0.0	.	Atlas-SNP
PLA2G4D	283748	hgsc.bcm.edu	37	15	42364533	42364533	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PLA2G4D-136	NM_178034	exon14	c.C1375T	p.L459L	GGGGCAGAGGGTT	.	82.0	19.0	69.0	0.0	.	Atlas-SNP
TMEM87A	25963	hgsc.bcm.edu	37	15	42503948	42503948	+	Splice_Site	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TMEM87A-91	NM_015497	exon21	c.1627-1G>C	.	TCGTTCCTAGGGA	.	45.0	10.0	50.0	0.0	.	Atlas-SNP
DUOXA1	90527	hgsc.bcm.edu	37	15	45409733	45409733	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DUOXA1-227	NM_001276265	exon7	c.C1297T	p.R433C	TGTGGCGGGAGGT	.	110.0	52.0	140.0	0.0	.	Atlas-SNP
SLC24A5	283652	hgsc.bcm.edu	37	15	48431348	48431348	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC24A5-90	NM_205850	exon7	c.C1054A	p.L352M	TATATCCTGGTTT	.	46.0	20.0	70.0	0.0	.	Atlas-SNP
FBN1	2200	hgsc.bcm.edu	37	15	48802361	48802361	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FBN1-92	NM_000138	exon14	c.G1594T	p.D532Y	ACTCATCAATGTC	.	88.0	16.0	143.0	0.0	.	Atlas-SNP
SHC4	399694	hgsc.bcm.edu	37	15	49135625	49135625	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SHC4-95	NM_203349	exon10	c.G1464T	p.G488G	TGGGCTCCCCAGT	.	158.0	32.0	152.0	0.0	.	Atlas-SNP
ATP8B4	79895	hgsc.bcm.edu	37	15	50212566	50212566	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ATP8B4-140	NM_024837	exon18	c.C1800T	p.Y600Y	GTCTCTGTATGCG	.	116.0	32.0	101.0	0.0	.	Atlas-SNP
TRPM7	54822	hgsc.bcm.edu	37	15	50897135	50897135	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TRPM7-392	NM_017672	exon21	c.G2916T	p.W972C	CACATACCAAAAT	.	134.0	47.0	182.0	0.0	.	Atlas-SNP
TRPM7	54822	hgsc.bcm.edu	37	15	50941083	50941083	+	Splice_Site	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TRPM7-392	NM_017672	exon5	c.123-1G>T	.	AAACACCTAAAAG	.	19.0	5.0	23.0	0.0	.	Atlas-SNP
UNC13C	440279	hgsc.bcm.edu	37	15	54305438	54305438	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	UNC13C-51	NM_001080534	exon1	c.A338C	p.N113T	GTGATAATGAGGA	.	85.0	31.0	124.0	0.0	.	Atlas-SNP
C2CD4A	145741	hgsc.bcm.edu	37	15	62359893	62359893	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	C2CD4A-68	NM_207322	exon2	c.C81A	p.R27R	GGCCCGCGGAGCC	.	77.0	38.0	34.0	0.0	.	Atlas-SNP
TLN2	83660	hgsc.bcm.edu	37	15	63031744	63031744	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TLN2-573	NM_015059	exon28	c.G3885T	p.Q1295H	AGCTCAGGTGGGT	.	155.0	74.0	128.0	0.0	.	Atlas-SNP
VWA9	81556	hgsc.bcm.edu	37	15	65884016	65884016	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001207058	exon9	c.A986T	p.N329I	ATGAGGTTTGATT	.	107.0	44.0	96.0	0.0	.	Atlas-SNP
NOX5	79400	hgsc.bcm.edu	37	15	69347714	69347714	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NOX5-136	NM_001184779	exon15	c.G1956T	p.L652L	TGCACTGGGCAAG	.	161.0	32.0	199.0	0.0	.	Atlas-SNP
PKM	5315	hgsc.bcm.edu	37	15	72502105	72502105	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_002654	exon5	c.G474T	p.W158C	GTCCAGCCACAGG	.	124.0	55.0	154.0	0.0	.	Atlas-SNP
TBC1D2B	23102	hgsc.bcm.edu	37	15	78290603	78290603	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TBC1D2B-136	NM_015079	exon13	c.G2739A	p.W913X	TCAGCTCCAGCCG	.	210.0	41.0	233.0	0.0	.	Atlas-SNP
ADAMTS7	11173	hgsc.bcm.edu	37	15	79051846	79051846	+	Missense_Mutation	SNP	T	T	C	rs199524707		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADAMTS7-226	NM_014272	exon24	c.A4978G	p.I1660V	TGCGGATGGTGGG	.	109.0	9.0	25.0	0.0	.	Atlas-SNP
KIAA1024	23251	hgsc.bcm.edu	37	15	79749156	79749156	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIAA1024-183	NM_015206	exon2	c.G667C	p.E223Q	GAAAACGAGTCCA	.	158.0	41.0	148.0	0.0	.	Atlas-SNP
ARNT2	9915	hgsc.bcm.edu	37	15	80767372	80767372	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ARNT2-175	NM_014862	exon5	c.G430C	p.E144Q	ATCCTTGAAGCAG	.	47.0	20.0	67.0	0.0	.	Atlas-SNP
ARNT2	9915	hgsc.bcm.edu	37	15	80800576	80800576	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ARNT2-175	NM_014862	exon6	c.G702A	p.R234R	CTCGCGGCGGTCT	.	128.0	65.0	137.0	0.0	.	Atlas-SNP
ARNT2	9915	hgsc.bcm.edu	37	15	80869292	80869292	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ARNT2-175	NM_014862	exon15	c.C1599A	p.S533S	ACACTCCGGGAAG	.	128.0	22.0	121.0	0.0	.	Atlas-SNP
KIAA1199	57214	hgsc.bcm.edu	37	15	81218065	81218065	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIAA1199-93	NM_018689	exon18	c.C2389A	p.R797S	TGGCTGCGCGGCG	.	131.0	61.0	100.0	0.0	.	Atlas-SNP
KIAA1199	57214	hgsc.bcm.edu	37	15	81224296	81224296	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIAA1199-93	NM_018689	exon21	c.C2709A	p.T903T	GCACACCAGCGCC	.	55.0	20.0	86.0	0.0	.	Atlas-SNP
FAM154B	283726	hgsc.bcm.edu	37	15	82574573	82574573	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM154B-70	NM_001008226	exon3	c.C367T	p.P123S	TTTGTTCCTCAGG	.	140.0	15.0	134.0	0.0	.	Atlas-SNP
AKAP13	11214	hgsc.bcm.edu	37	15	86124843	86124843	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	AKAP13-258	NM_006738	exon7	c.G3544A	p.E1182K	GACGATGAAGCAC	.	139.0	22.0	152.0	0.0	.	Atlas-SNP
KLHL25	64410	hgsc.bcm.edu	37	15	86312878	86312878	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KLHL25-92	NM_022480	exon2	c.G164T	p.R55L	AAGGCACGGTCGC	.	213.0	50.0	210.0	0.0	.	Atlas-SNP
AGBL1	123624	hgsc.bcm.edu	37	15	86697774	86697774	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_152336	exon3	c.C238A	p.R80S	GCTCTGCGTGTGT	.	94.0	15.0	87.0	0.0	.	Atlas-SNP
AGBL1	123624	hgsc.bcm.edu	37	15	86800211	86800211	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_152336	exon7	c.G725T	p.G242V	TCCCCGGGTGCAT	.	117.0	29.0	102.0	0.0	.	Atlas-SNP
NTRK3	4916	hgsc.bcm.edu	37	15	88423642	88423642	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NTRK3-3538	NM_002530	exon18	c.G2151T	p.M717I	GGGGAGCATGGTG	.	90.0	49.0	101.0	0.0	.	Atlas-SNP
CERS3	204219	hgsc.bcm.edu	37	15	100996194	100996194	+	Nonsense_Mutation	SNP	G	G	T	rs139946861	byfrequency;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_178842	exon12	c.C903A	p.Y301X	GAAGATGTATGAA	.	62.0	12.0	64.0	0.0	G|0.997;A|0.003	Atlas-SNP
LRRK1	79705	hgsc.bcm.edu	37	15	101565124	101565124	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LRRK1-602	NM_024652	exon16	c.G2184A	p.L728L	GGCGCTGGGGGAG	.	101.0	46.0	107.0	0.0	.	Atlas-SNP
OR4N3P	390539	hgsc.bcm.edu	37	15	22414205	22414205	+	RNA	DEL	C	C	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	.	.	.	.	.	.	292.0	65.0	261.0	0.0	.	Atlas-Indel
DTWD1	56986	hgsc.bcm.edu	37	15	49926822	49926822	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DTWD1-226	NM_001144955	exon4	c.497delG	p.G166fs	.	.	94.0	21.0	161.0	0.0	.	Atlas-Indel
PDIA2	64714	hgsc.bcm.edu	37	16	335179	335179	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PDIA2-91	NM_006849	exon5	c.G774C	p.L258L	GCGCCTGGTCACG	.	129.0	23.0	99.0	0.0	.	Atlas-SNP
PDIA2	64714	hgsc.bcm.edu	37	16	335541	335541	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PDIA2-91	NM_006849	exon7	c.T957A	p.N319K	CGACAATGAGCAC	.	172.0	33.0	164.0	0.0	.	Atlas-SNP
C16orf13	84326	hgsc.bcm.edu	37	16	684529	684529	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	C16orf13-22	NM_001040160	exon5	c.C615G	p.P205P	GGCCTAGGGAGGC	.	127.0	35.0	136.0	0.0	.	Atlas-SNP
TELO2	9894	hgsc.bcm.edu	37	16	1551665	1551665	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TELO2-90	NM_016111	exon11	c.A1363G	p.T455A	TAAAGCACGTCCC	.	68.0	29.0	48.0	0.0	.	Atlas-SNP
CRAMP1L	57585	hgsc.bcm.edu	37	16	1706050	1706050	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_020825	exon9	c.G1292T	p.R431L	GCGGCCGGTGCAA	.	146.0	66.0	54.0	0.0	.	Atlas-SNP
SLC9A3R2	9351	hgsc.bcm.edu	37	16	2079600	2079600	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC9A3R2-23	NM_001130012	exon2	c.G231T	p.K77N	GATCAAGGCTGTG	.	151.0	25.0	124.0	0.0	.	Atlas-SNP
E4F1	1877	hgsc.bcm.edu	37	16	2284352	2284352	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	E4F1-187	NM_004424	exon10	c.A1556G	p.Y519C	GGCCCTACCCTTG	.	355.0	156.0	262.0	0.0	.	Atlas-SNP
SRRM2	23524	hgsc.bcm.edu	37	16	2816143	2816143	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SRRM2-93	NM_016333	exon11	c.A5614T	p.T1872S	CCAGCCACTCACC	.	161.0	73.0	155.0	0.0	.	Atlas-SNP
C16orf90	646174	hgsc.bcm.edu	37	16	3544850	3544850	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001080524	exon2	c.C74A	p.P25H	TGGCCGGGGCGTC	.	50.0	22.0	8.0	0.0	.	Atlas-SNP
ADCY9	115	hgsc.bcm.edu	37	16	4164589	4164589	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADCY9-139	NM_001116	exon2	c.G855T	p.G285G	GAGCAGCCCCCTG	.	87.0	36.0	78.0	0.0	.	Atlas-SNP
TEKT5	146279	hgsc.bcm.edu	37	16	10769881	10769881	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TEKT5-92	NM_144674	exon5	c.G1021T	p.A341S	TGAAGGCCAGGTT	.	134.0	23.0	111.0	0.0	.	Atlas-SNP
TEKT5	146279	hgsc.bcm.edu	37	16	10769882	10769882	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TEKT5-92	NM_144674	exon5	c.G1020T	p.L340L	GAAGGCCAGGTTG	.	135.0	25.0	111.0	0.0	.	Atlas-SNP
CIITA	4261	hgsc.bcm.edu	37	16	11000690	11000690	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CIITA-226	NM_000246	exon11	c.T1341G	p.F447L	CGACTTTGTCTTC	.	83.0	19.0	62.0	0.0	.	Atlas-SNP
KIAA0430	9665	hgsc.bcm.edu	37	16	15732947	15732947	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIAA0430-90	NM_001184999	exon2	c.G144C	p.T48T	AGTTACCGTTTGG	.	86.0	36.0	139.0	0.0	.	Atlas-SNP
C16orf62	57020	hgsc.bcm.edu	37	16	19628040	19628040	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	C16orf62-69	NM_020314	exon14	c.G1401T	p.V467V	GCTGGTGGTCCAA	.	162.0	45.0	140.0	0.0	.	Atlas-SNP
GP2	2813	hgsc.bcm.edu	37	16	20331586	20331586	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GP2-94	NM_001007242	exon4	c.G415T	p.E139X	TTACCTCCAGAAT	.	93.0	27.0	110.0	0.0	.	Atlas-SNP
ACSM2A	123876	hgsc.bcm.edu	37	16	20476935	20476935	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ACSM2A-91	NM_001010845	exon4	c.C274T	p.Q92X	AGCCAGCAGGCAG	.	443.0	57.0	400.0	0.0	.	Atlas-SNP
HS3ST2	9956	hgsc.bcm.edu	37	16	22825984	22825984	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HS3ST2-516	NM_006043	exon1	c.G53A	p.R18H	GGGCGCGCAGGCT	.	85.0	51.0	14.0	0.0	.	Atlas-SNP
HS3ST2	9956	hgsc.bcm.edu	37	16	22926624	22926624	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HS3ST2-516	NM_006043	exon2	c.C845A	p.A282D	ACCCGGCCGGCGA	.	138.0	68.0	138.0	0.0	.	Atlas-SNP
ERN2	10595	hgsc.bcm.edu	37	16	23716290	23716290	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ERN2-322	NM_033266	exon8	c.C912G	p.L304L	GAGGGCGAGGAAA	.	212.0	91.0	73.0	0.0	.	Atlas-SNP
RBBP6	5930	hgsc.bcm.edu	37	16	24582830	24582830	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RBBP6-230	NM_018703	exon17	c.G4341T	p.E1447D	CAGAGAGTATTCA	.	78.0	19.0	81.0	0.0	.	Atlas-SNP
SLC5A11	115584	hgsc.bcm.edu	37	16	24909414	24909414	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC5A11-92	NM_001258412	exon9	c.C780G	p.S260R	GGTCAGCCGCATC	.	68.0	16.0	51.0	0.0	.	Atlas-SNP
C16orf82	162083	hgsc.bcm.edu	37	16	27078584	27078584	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001145545	exon1	c.G268T	p.G90W	AGCAGCGGGTACG	.	64.0	19.0	66.0	0.0	.	Atlas-SNP
KIAA0556	23247	hgsc.bcm.edu	37	16	27709688	27709688	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIAA0556-141	NM_015202	exon9	c.G980T	p.R327L	CAACCCGCAAAAC	.	79.0	16.0	59.0	0.0	.	Atlas-SNP
NFATC2IP	84901	hgsc.bcm.edu	37	16	28970367	28970367	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NFATC2IP-91	NM_032815	exon7	c.G1047T	p.Q349H	GCTCCAGCTCCGG	.	254.0	92.0	239.0	0.0	.	Atlas-SNP
C16orf92	146378	hgsc.bcm.edu	37	16	30035165	30035165	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	C16orf92-68	NM_001109659	exon2	c.C182A	p.A61D	CTGTGGCCCAGTT	.	137.0	72.0	119.0	0.0	.	Atlas-SNP
ARMC5	79798	hgsc.bcm.edu	37	16	31477303	31477303	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ARMC5-24	NM_001105247	exon5	c.G1997T	p.R666L	TCTGCCGGTGAGT	.	61.0	28.0	73.0	0.0	.	Atlas-SNP
SHCBP1	79801	hgsc.bcm.edu	37	16	46637518	46637518	+	Silent	SNP	A	A	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SHCBP1-154	NM_024745	exon8	c.T1146G	p.V382V	AACAATAACAGTG	.	334.0	148.0	282.0	0.0	.	Atlas-SNP
ABCC12	94160	hgsc.bcm.edu	37	16	48134826	48134826	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ABCC12-93	NM_033226	exon21	c.G2995T	p.G999C	TGATGCCCAGGCC	.	203.0	78.0	188.0	0.0	.	Atlas-SNP
ABCC12	94160	hgsc.bcm.edu	37	16	48173122	48173122	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ABCC12-93	NM_033226	exon5	c.C783A	p.P261P	AGCTGTGGGCCCC	.	116.0	22.0	108.0	0.0	.	Atlas-SNP
NOD2	64127	hgsc.bcm.edu	37	16	50744557	50744557	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NOD2-231	NM_022162	exon4	c.G735T	p.T245T	AGAGACGCTCTGC	.	129.0	28.0	140.0	0.0	.	Atlas-SNP
SALL1	6299	hgsc.bcm.edu	37	16	51173113	51173113	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SALL1-98	NM_002968	exon2	c.G3020C	p.G1007A	GTTTTGCCACAAA	.	120.0	23.0	145.0	0.0	.	Atlas-SNP
IRX6	79190	hgsc.bcm.edu	37	16	55360430	55360430	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IRX6-174	NM_024335	exon2	c.G228T	p.A76A	CTATGCGGCCGCT	.	126.0	57.0	86.0	0.0	.	Atlas-SNP
IRX6	79190	hgsc.bcm.edu	37	16	55362936	55362936	+	Missense_Mutation	SNP	C	C	A	rs200996745	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IRX6-174	NM_024335	exon5	c.C1046A	p.P349Q	AGAAACCGCGCAT	.	156.0	31.0	127.0	0.0	C|0.999;T|0.000	Atlas-SNP
CES5A	221223	hgsc.bcm.edu	37	16	55880508	55880508	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CES5A-94	NM_001143685	exon13	c.G1583T	p.G528V	CTCTGTCCGAGGC	.	141.0	73.0	167.0	0.0	.	Atlas-SNP
NUP93	9688	hgsc.bcm.edu	37	16	56782300	56782300	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NUP93-205	NM_014669	exon2	c.C141G	p.T47T	CCGTACCCTAACA	.	77.0	32.0	93.0	0.0	.	Atlas-SNP
SLC12A3	6559	hgsc.bcm.edu	37	16	56936360	56936360	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC12A3-155	NM_000339	exon24	c.G2823A	p.E941E	CAACGAGATGCGG	.	157.0	28.0	146.0	0.0	.	Atlas-SNP
CCDC135	84229	hgsc.bcm.edu	37	16	57732900	57732900	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CCDC135-90	NM_032269	exon3	c.C342A	p.P114P	CGTGCCCCTCTTC	.	114.0	24.0	109.0	0.0	.	Atlas-SNP
CCDC135	84229	hgsc.bcm.edu	37	16	57735916	57735916	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CCDC135-90	NM_032269	exon5	c.G573C	p.T191T	CAGTACGCTGCTC	.	195.0	25.0	189.0	0.0	.	Atlas-SNP
SLC38A7	55238	hgsc.bcm.edu	37	16	58713931	58713931	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC38A7-69	NM_018231	exon3	c.G100T	p.A34S	TGGGGGCTGTGTC	.	80.0	32.0	85.0	0.0	.	Atlas-SNP
GOT2	2806	hgsc.bcm.edu	37	16	58768113	58768113	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GOT2-91	NM_002080	exon1	c.G20T	p.G7V	ACGCGGCCGGAGT	.	127.0	44.0	15.0	0.0	.	Atlas-SNP
CDH8	1006	hgsc.bcm.edu	37	16	61851398	61851398	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CDH8-161	NM_001796	exon7	c.C1262G	p.T421S	CTGGAAGTGATAT	.	134.0	53.0	146.0	0.0	.	Atlas-SNP
FAM65A	79567	hgsc.bcm.edu	37	16	67579578	67579578	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM65A-92	NM_001193522	exon19	c.C3214T	p.R1072W	CTGGTGCGGAATC	.	118.0	54.0	141.0	0.0	.	Atlas-SNP
FAM65A	79567	hgsc.bcm.edu	37	16	67579579	67579579	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM65A-92	NM_001193522	exon19	c.G3215T	p.R1072L	TGGTGCGGAATCT	.	118.0	55.0	142.0	0.0	.	Atlas-SNP
DPEP3	64180	hgsc.bcm.edu	37	16	68012506	68012506	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DPEP3-71	NM_001129758	exon3	c.C513A	p.C171X	GGACTGGCATGAG	.	170.0	37.0	136.0	0.0	.	Atlas-SNP
PDPR	55066	hgsc.bcm.edu	37	16	70182454	70182454	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PDPR-135	NM_017990	exon17	c.G2050A	p.E684K	CCCATAGAGGTGA	.	405.0	56.0	342.0	0.0	.	Atlas-SNP
FUK	197258	hgsc.bcm.edu	37	16	70512517	70512517	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FUK-91	NM_145059	exon22	c.C2893T	p.R965W	CTGGTACGGCAAA	.	65.0	29.0	49.0	0.0	.	Atlas-SNP
DHX38	9785	hgsc.bcm.edu	37	16	72144969	72144969	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DHX38-227	NM_014003	exon26	c.A3592T	p.S1198C	CTGGGCAGTGTCA	.	104.0	17.0	36.0	0.0	.	Atlas-SNP
ADAT1	23536	hgsc.bcm.edu	37	16	75637040	75637040	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADAT1-92	NM_012091	exon10	c.G1319T	p.R440I	AATGATCTGAAGA	.	111.0	13.0	125.0	0.0	.	Atlas-SNP
CNTNAP4	85445	hgsc.bcm.edu	37	16	76486501	76486501	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CNTNAP4-70	NM_138994	exon7	c.G949T	p.E317X	GGAGAGGAGGAGG	.	64.0	21.0	92.0	0.0	.	Atlas-SNP
CNTNAP4	85445	hgsc.bcm.edu	37	16	76555117	76555117	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CNTNAP4-70	NM_138994	exon15	c.G2227C	p.D743H	AGCGCGGATGTAT	.	34.0	15.0	60.0	0.0	.	Atlas-SNP
ZCCHC14	23174	hgsc.bcm.edu	37	16	87445728	87445728	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZCCHC14-154	NM_015144	exon12	c.A2188T	p.S730C	TGGAGCTGGGGGC	.	59.0	11.0	58.0	0.0	.	Atlas-SNP
ZNF469	84627	hgsc.bcm.edu	37	16	88494585	88494585	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001127464	exon1	c.C707G	p.P236R	CCTGGCCTCCCGC	.	80.0	27.0	129.0	0.0	.	Atlas-SNP
ZNF469	84627	hgsc.bcm.edu	37	16	88495049	88495049	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001127464	exon1	c.C1171A	p.L391M	GATGGGCTGGGGA	.	94.0	31.0	79.0	0.0	.	Atlas-SNP
ZNF469	84627	hgsc.bcm.edu	37	16	88502418	88502418	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001127464	exon2	c.A8456T	p.K2819M	GTGCCAAGGATCC	.	42.0	12.0	49.0	0.0	.	Atlas-SNP
CRAMP1L	57585	hgsc.bcm.edu	37	16	1706047	1706048	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_020825	exon9	c.1289_1290insC	p.G430fs	.	.	142.0	59.0	55.0	0.0	.	Atlas-Indel
VPS53	55275	hgsc.bcm.edu	37	17	505108	505108	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	VPS53-90	NM_001128159	exon12	c.C1145T	p.T382I	GGATTGGTAGATG	.	79.0	22.0	79.0	0.0	.	Atlas-SNP
OR1A2	26189	hgsc.bcm.edu	37	17	3101229	3101229	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR1A2-70	NM_012352	exon1	c.G417T	p.R139R	TCCACGGTCTTGT	.	214.0	46.0	232.0	0.0	.	Atlas-SNP
GSG2	83903	hgsc.bcm.edu	37	17	3628702	3628702	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GSG2-297	NM_031965	exon1	c.G1473T	p.G491G	GATTGGGGAAGGG	.	146.0	27.0	163.0	0.0	.	Atlas-SNP
ZZEF1	23140	hgsc.bcm.edu	37	17	3955316	3955316	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZZEF1-93	NM_015113	exon35	c.A5549T	p.D1850V	AAGTCATCGCAAA	.	110.0	23.0	128.0	0.0	.	Atlas-SNP
ZZEF1	23140	hgsc.bcm.edu	37	17	3959640	3959640	+	Splice_Site	SNP	C	C	A	rs60052193	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZZEF1-93	NM_015113	exon34	c.5166-1G>T	.	CATTGGCTGAAAG	.	56.0	10.0	55.0	0.0	.	Atlas-SNP
ZZEF1	23140	hgsc.bcm.edu	37	17	3973982	3973982	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZZEF1-93	NM_015113	exon26	c.A4071T	p.K1357N	ACCATATTTTTGC	.	56.0	26.0	56.0	0.0	.	Atlas-SNP
SPNS3	201305	hgsc.bcm.edu	37	17	4351540	4351540	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SPNS3-153	NM_182538	exon6	c.G712T	p.G238W	GGGGAGGGGGCCG	.	98.0	42.0	65.0	0.0	.	Atlas-SNP
NLRP1	22861	hgsc.bcm.edu	37	17	5436275	5436275	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NLRP1-274	NM_033007	exon10	c.G3073T	p.E1025X	AGAGTTCCACCGG	.	109.0	41.0	108.0	0.0	.	Atlas-SNP
TP53	7157	hgsc.bcm.edu	37	17	7578413	7578413	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	TP53,NS,carcinoma,+2	TP53-70225	NM_001126114	exon5	c.G517T	p.V173L	GCCTCACAACCTC	.	176.0	72.0	159.0	0.0	.	Atlas-SNP
TP53	7157	hgsc.bcm.edu	37	17	7578534	7578534	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	TP53,NS,carcinoma,-1	TP53-70225	NM_001126114	exon5	c.G396C	p.K132N	AAACATCTTGTTG	.	89.0	18.0	80.0	0.0	.	Atlas-SNP
PER1	5187	hgsc.bcm.edu	37	17	8053364	8053364	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PER1-723	NM_002616	exon4	c.G454C	p.E152Q	GGCGCTCTGGCGG	.	99.0	28.0	138.0	0.0	.	Atlas-SNP
AURKB	9212	hgsc.bcm.edu	37	17	8110524	8110524	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	AURKB-1508	NM_004217	exon5	c.G368A	p.R123H	TCTCTGCGCAGCT	.	93.0	24.0	75.0	0.0	.	Atlas-SNP
USP43	124739	hgsc.bcm.edu	37	17	9631601	9631601	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	USP43-637	NM_153210	exon15	c.G2666T	p.G889V	CAGCCGGGGTGCC	.	266.0	112.0	252.0	0.0	.	Atlas-SNP
GLP2R	9340	hgsc.bcm.edu	37	17	9792935	9792935	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GLP2R-524	NM_004246	exon13	c.C1575A	p.P525P	CTGGCCCCGGGGC	.	101.0	42.0	89.0	0.0	.	Atlas-SNP
MYH13	8735	hgsc.bcm.edu	37	17	10227550	10227550	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYH13-6	NM_003802	exon23	c.G2723T	p.R908L	TCACACCGTTCCT	.	93.0	21.0	74.0	0.0	.	Atlas-SNP
MYH8	4626	hgsc.bcm.edu	37	17	10293878	10293878	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYH8-101	NM_002472	exon40	c.C5707A	p.Q1903K	CATGCTGGAGTTT	.	66.0	13.0	81.0	0.0	.	Atlas-SNP
MYH8	4626	hgsc.bcm.edu	37	17	10303798	10303798	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYH8-101	NM_002472	exon27	c.G3644T	p.R1215L	TTGACCCGCTGCA	.	55.0	24.0	46.0	0.0	.	Atlas-SNP
MYH4	4622	hgsc.bcm.edu	37	17	10353829	10353829	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYH4-102	NM_017533	exon30	c.G4122T	p.Q1374H	CCTCCACTGGGCA	.	131.0	20.0	115.0	0.0	.	Atlas-SNP
MYH4	4622	hgsc.bcm.edu	37	17	10356511	10356511	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYH4-102	NM_017533	exon24	c.C3069A	p.T1023T	GGTCAGGGTGTTG	.	162.0	75.0	224.0	0.0	.	Atlas-SNP
MYH4	4622	hgsc.bcm.edu	37	17	10357111	10357111	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYH4-102	NM_017533	exon23	c.A2783G	p.E928G	GCTCTTTCAGTTA	.	193.0	39.0	258.0	0.0	.	Atlas-SNP
MYH1	4619	hgsc.bcm.edu	37	17	10402002	10402002	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYH1-171	NM_005963	exon30	c.G4122A	p.Q1374Q	CCTCCACTGGGCA	.	102.0	37.0	88.0	0.0	.	Atlas-SNP
MYH1	4619	hgsc.bcm.edu	37	17	10408289	10408289	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYH1-171	NM_005963	exon22	c.C2529A	p.L843L	TTTGAGGAGGGGT	.	83.0	28.0	63.0	0.0	.	Atlas-SNP
MYH2	4620	hgsc.bcm.edu	37	17	10428845	10428845	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYH2-194	NM_001100112	exon32	c.T4460A	p.L1487Q	TTGAACAGCTCAG	.	57.0	10.0	63.0	0.0	.	Atlas-SNP
MYH3	4621	hgsc.bcm.edu	37	17	10535908	10535908	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYH3-95	NM_002470	exon34	c.G4841T	p.R1614L	TTGAGCCGGATGG	.	60.0	27.0	64.0	0.0	.	Atlas-SNP
SHISA6	388336	hgsc.bcm.edu	37	17	11461111	11461111	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SHISA6-67	NM_001173461	exon4	c.C993T	p.H331H	GCGGCACCTGCCC	.	99.0	30.0	101.0	0.0	.	Atlas-SNP
DNAH9	1770	hgsc.bcm.edu	37	17	11592948	11592948	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DNAH9-168	NM_001372	exon20	c.C3809A	p.S1270Y	TGGAATCCACTAT	.	82.0	31.0	110.0	0.0	.	Atlas-SNP
DNAH9	1770	hgsc.bcm.edu	37	17	11725237	11725237	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DNAH9-168	NM_001372	exon46	c.G8708C	p.G2903A	TCCCAGGGGAGAT	.	75.0	21.0	61.0	0.0	.	Atlas-SNP
DNAH9	1770	hgsc.bcm.edu	37	17	11738038	11738038	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DNAH9-168	NM_001372	exon49	c.C9330A	p.V3110V	TCAGGTCGTGGGT	.	267.0	46.0	233.0	0.0	.	Atlas-SNP
DNAH9	1770	hgsc.bcm.edu	37	17	11772530	11772530	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DNAH9-168	NM_001372	exon51	c.C10013A	p.A3338D	AAGAAGCCGAAGT	.	36.0	4.0	50.0	0.0	.	Atlas-SNP
MYOCD	93649	hgsc.bcm.edu	37	17	12656026	12656026	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYOCD-93	NM_001146312	exon10	c.C1421A	p.T474N	CGGACACCTTCAA	.	137.0	30.0	113.0	0.0	.	Atlas-SNP
HS3ST3A1	9955	hgsc.bcm.edu	37	17	13504387	13504387	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HS3ST3A1-515	NM_006042	exon1	c.C60A	p.S20R	GAAGATGCTGCGG	.	166.0	42.0	94.0	0.0	.	Atlas-SNP
TBC1D26	353149	hgsc.bcm.edu	37	17	15638662	15638662	+	Splice_Site	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TBC1D26-90	.	.	.	.	TTGCAGGATGGAG	.	258.0	63.0	264.0	0.0	.	Atlas-SNP
PEMT	10400	hgsc.bcm.edu	37	17	17415964	17415964	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PEMT-90	NM_148172	exon4	c.A325G	p.T109A	CCTGCGTGAAGCT	.	179.0	73.0	113.0	0.0	.	Atlas-SNP
RAI1	10743	hgsc.bcm.edu	37	17	17701546	17701546	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RAI1-91	NM_030665	exon3	c.G5284C	p.D1762H	CCAGCTGACCCGG	.	70.0	13.0	14.0	0.0	.	Atlas-SNP
FLII	2314	hgsc.bcm.edu	37	17	18148680	18148680	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FLII-91	NM_001256265	exon28	c.G3498C	p.L1166L	GGCCTTCAGGCTC	.	127.0	57.0	150.0	0.0	.	Atlas-SNP
CDRT15L2	256223	hgsc.bcm.edu	37	17	20483562	20483562	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001190790	exon2	c.G366T	p.E122D	GGTGGAGGGAGCT	.	194.0	33.0	184.0	0.0	.	Atlas-SNP
CDRT15L2	256223	hgsc.bcm.edu	37	17	20483563	20483563	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001190790	exon2	c.G367T	p.G123X	GTGGAGGGAGCTC	.	196.0	33.0	180.0	0.0	.	Atlas-SNP
MAP2K3	5606	hgsc.bcm.edu	37	17	21201734	21201734	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MAP2K3-790	NM_145109	exon2	c.A59G	p.K20R	AATCCAAGAGGAA	.	190.0	28.0	225.0	0.0	.	Atlas-SNP
KCNJ12	3768	hgsc.bcm.edu	37	17	21319212	21319212	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KCNJ12-94	NM_021012	exon3	c.G558C	p.R186S	GGCAAGGCCCAAG	.	320.0	23.0	240.0	0.0	.	Atlas-SNP
KCNJ12	3768	hgsc.bcm.edu	37	17	21319910	21319910	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KCNJ12-94	NM_021012	exon3	c.G1256T	p.G419V	CTGGCGGCGGGGT	.	95.0	7.0	59.0	0.0	.	Atlas-SNP
PIPOX	51268	hgsc.bcm.edu	37	17	27383223	27383223	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PIPOX-90	NM_016518	exon8	c.G1073A	p.G358E	TGGTGGGGAAGAT	.	104.0	38.0	133.0	0.0	.	Atlas-SNP
PIPOX	51268	hgsc.bcm.edu	37	17	27383224	27383224	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PIPOX-90	NM_016518	exon8	c.G1074A	p.G358G	GGTGGGGAAGATC	.	107.0	39.0	134.0	0.0	.	Atlas-SNP
EFCAB5	374786	hgsc.bcm.edu	37	17	28407846	28407846	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EFCAB5-70	NM_198529	exon17	c.C3273T	p.N1091N	CTGGAACCAGTCC	.	155.0	34.0	189.0	0.0	.	Atlas-SNP
CPD	1362	hgsc.bcm.edu	37	17	28748840	28748840	+	Silent	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CPD-92	NM_001199775	exon4	c.A555T	p.V185V	TACAGTAGTTTTA	.	68.0	18.0	77.0	0.0	.	Atlas-SNP
CRLF3	51379	hgsc.bcm.edu	37	17	29120477	29120477	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CRLF3-90	NM_015986	exon5	c.G817C	p.V273L	GAGGCACCAATGT	.	111.0	46.0	120.0	0.0	.	Atlas-SNP
SPACA3	124912	hgsc.bcm.edu	37	17	31322454	31322454	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SPACA3-92	NM_173847	exon2	c.C62A	p.P21H	CTTCTCCTTCTGT	.	130.0	20.0	131.0	0.0	.	Atlas-SNP
ASIC2	40	hgsc.bcm.edu	37	17	31618866	31618866	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_183377	exon1	c.G268T	p.V90L	CCAGCACCCACAG	.	69.0	20.0	39.0	0.0	.	Atlas-SNP
UNC45B	146862	hgsc.bcm.edu	37	17	33504573	33504573	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	UNC45B-157	NM_173167	exon17	c.G2205T	p.Q735H	GCTTCAGAACTAT	.	79.0	45.0	63.0	0.0	.	Atlas-SNP
SLC35G3	146861	hgsc.bcm.edu	37	17	33520493	33520493	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_152462	exon1	c.C834T	p.H278H	GGCAGGGTGGGCC	.	251.0	53.0	219.0	0.0	.	Atlas-SNP
SLFN5	162394	hgsc.bcm.edu	37	17	33592239	33592239	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLFN5-92	NM_144975	exon5	c.C2008T	p.Q670X	ATCACTCAGACAG	.	184.0	26.0	221.0	0.0	.	Atlas-SNP
SLFN13	146857	hgsc.bcm.edu	37	17	33768243	33768243	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLFN13-91	NM_144682	exon6	c.C2065G	p.Q689E	CTCTCTGAGTGAT	.	118.0	23.0	120.0	0.0	.	Atlas-SNP
STARD3	10948	hgsc.bcm.edu	37	17	37818535	37818535	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	STARD3-90	NM_001165938	exon13	c.C1117T	p.L373F	ATCGTGCTCAAGT	.	146.0	46.0	120.0	0.0	.	Atlas-SNP
KRT36	8689	hgsc.bcm.edu	37	17	39645883	39645883	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KRT36-90	NM_003771	exon1	c.G234T	p.V78V	GCTCCCCACAAAG	.	118.0	36.0	105.0	0.0	.	Atlas-SNP
KRT14	3861	hgsc.bcm.edu	37	17	39742633	39742633	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KRT14-91	NM_000526	exon1	c.C454G	p.Q152E	GCCTCTGGTACCA	.	238.0	52.0	242.0	0.0	.	Atlas-SNP
KRT16	3868	hgsc.bcm.edu	37	17	39766464	39766464	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KRT16-91	NM_005557	exon7	c.C1305T	p.G435G	GGATTGGCCAGAT	.	284.0	57.0	263.0	0.0	.	Atlas-SNP
LEPREL4	10609	hgsc.bcm.edu	37	17	39964251	39964251	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LEPREL4-90	NM_006455	exon5	c.G922A	p.D308N	GCACATCATTCAC	.	199.0	35.0	213.0	0.0	.	Atlas-SNP
ACLY	47	hgsc.bcm.edu	37	17	40054039	40054039	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ACLY-228	NM_198830	exon13	c.G1392T	p.V464V	AGGCGCCACCTCA	.	70.0	35.0	66.0	0.0	.	Atlas-SNP
GHDC	84514	hgsc.bcm.edu	37	17	40344460	40344460	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GHDC-90	NM_032484	exon5	c.G688A	p.G230R	GCGCTCCAGGGTT	.	82.0	39.0	62.0	0.0	.	Atlas-SNP
ADAM11	4185	hgsc.bcm.edu	37	17	42847371	42847371	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADAM11-227	NM_002390	exon4	c.C336G	p.Y112X	GCAATACGTGGAG	.	144.0	24.0	103.0	0.0	.	Atlas-SNP
KANSL1	284058	hgsc.bcm.edu	37	17	44117207	44117207	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_015443	exon8	c.G2064T	p.Q688H	CTGCCACTGAGAT	.	95.0	20.0	93.0	0.0	.	Atlas-SNP
OSBPL7	114881	hgsc.bcm.edu	37	17	45894628	45894628	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OSBPL7-68	NM_145798	exon8	c.A696T	p.T232T	CTGGTGTGTGGGG	.	33.0	18.0	63.0	0.0	.	Atlas-SNP
ITGA3	3675	hgsc.bcm.edu	37	17	48154781	48154781	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ITGA3-229	NM_002204	exon16	c.G2109T	p.E703D	TTGCGAGCTGGGG	.	135.0	25.0	136.0	0.0	.	Atlas-SNP
SGCA	6442	hgsc.bcm.edu	37	17	48246526	48246526	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SGCA-92	NM_000023	exon6	c.G658T	p.A220S	AGCCACGCCCGCT	.	59.0	28.0	72.0	0.0	.	Atlas-SNP
CACNA1G	8913	hgsc.bcm.edu	37	17	48677192	48677192	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CACNA1G-67	NM_198382	exon16	c.G3593A	p.G1198E	TGGATGGGGATGA	.	91.0	38.0	61.0	0.0	.	Atlas-SNP
KIF2B	84643	hgsc.bcm.edu	37	17	51900753	51900753	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIF2B-98	NM_032559	exon1	c.C359G	p.P120R	TGATCCCCCAGAA	.	64.0	36.0	75.0	0.0	.	Atlas-SNP
TOM1L1	10040	hgsc.bcm.edu	37	17	53014522	53014522	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TOM1L1-91	NM_005486	exon10	c.G968T	p.S323I	GTCCCAGTCCCCG	.	31.0	14.0	39.0	0.0	.	Atlas-SNP
NOG	9241	hgsc.bcm.edu	37	17	54671840	54671840	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NOG-90	NM_005450	exon1	c.G256T	p.D86Y	CCCGAGGACCGGC	.	68.0	17.0	17.0	0.0	.	Atlas-SNP
LPO	4025	hgsc.bcm.edu	37	17	56326518	56326518	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LPO-91	NM_006151	exon5	c.T423C	p.I141I	CACCATTACGGGA	.	69.0	18.0	68.0	0.0	.	Atlas-SNP
MTMR4	9110	hgsc.bcm.edu	37	17	56570286	56570286	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MTMR4-91	NM_004687	exon17	c.G3238T	p.D1080Y	CAGTATCACTGCC	.	213.0	33.0	262.0	0.0	.	Atlas-SNP
MTMR4	9110	hgsc.bcm.edu	37	17	56570288	56570288	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MTMR4-91	NM_004687	exon17	c.G3236T	p.S1079I	GTATCACTGCCAT	.	209.0	33.0	263.0	0.0	.	Atlas-SNP
SEPT4	5414	hgsc.bcm.edu	37	17	56598641	56598641	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SEPT4-68	NM_080416	exon9	c.G1031C	p.R344P	TAGAGTCGACCCC	.	138.0	33.0	160.0	0.0	.	Atlas-SNP
TEX14	56155	hgsc.bcm.edu	37	17	56676889	56676889	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TEX14-810	NM_198393	exon14	c.A1817T	p.E606V	CTGGCCTCTTCTG	.	105.0	51.0	69.0	0.0	.	Atlas-SNP
HEATR6	63897	hgsc.bcm.edu	37	17	58137396	58137396	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HEATR6-227	NM_022070	exon10	c.C1478G	p.S493C	GCAACAGAAAGAA	.	95.0	15.0	99.0	0.0	.	Atlas-SNP
NACA2	342538	hgsc.bcm.edu	37	17	59668146	59668146	+	Silent	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NACA2-91	NM_199290	exon1	c.T396A	p.S132S	TTGCTGAGATAAA	.	120.0	75.0	116.0	0.0	.	Atlas-SNP
EFCAB3	146779	hgsc.bcm.edu	37	17	60484029	60484029	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EFCAB3-227	NM_173503	exon7	c.T677A	p.L226H	AAGAGCTCAAGAG	.	64.0	24.0	69.0	0.0	.	Atlas-SNP
GH2	2689	hgsc.bcm.edu	37	17	61958131	61958131	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GH2-93	NM_022557	exon4	c.G457T	p.V153L	CCCTCACCCACAT	.	163.0	32.0	180.0	0.0	.	Atlas-SNP
ABCA6	23460	hgsc.bcm.edu	37	17	67094069	67094069	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ABCA6-159	NM_080284	exon23	c.G3112T	p.D1038Y	TGTAATCACTGAT	.	17.0	7.0	26.0	0.0	.	Atlas-SNP
ABCA5	23461	hgsc.bcm.edu	37	17	67285343	67285343	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ABCA5-93	NM_172232	exon14	c.G1877T	p.G626V	GCAATTCCTAATG	.	33.0	14.0	29.0	0.0	.	Atlas-SNP
ABCA5	23461	hgsc.bcm.edu	37	17	67285344	67285344	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ABCA5-93	NM_172232	exon14	c.G1876C	p.G626R	CAATTCCTAATGA	.	33.0	14.0	30.0	0.0	.	Atlas-SNP
SDK2	54549	hgsc.bcm.edu	37	17	71334923	71334923	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SDK2-24	NM_001144952	exon45	c.G6322T	p.G2108C	GCTCACCCGAGTC	.	174.0	41.0	187.0	0.0	.	Atlas-SNP
CD300LB	124599	hgsc.bcm.edu	37	17	72522169	72522169	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CD300LB-91	NM_174892	exon2	c.G199T	p.G67W	GGGACCCCTGCTC	.	81.0	43.0	55.0	0.0	.	Atlas-SNP
RAB37	326624	hgsc.bcm.edu	37	17	72725483	72725483	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RAB37-230	NM_175738	exon2	c.C161T	p.A54V	TCTCGGCCACTGT	.	183.0	35.0	175.0	0.0	.	Atlas-SNP
OTOP2	92736	hgsc.bcm.edu	37	17	72926856	72926856	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OTOP2-134	NM_178160	exon6	c.G1126C	p.A376P	GGTGCCGCCCTGG	.	179.0	42.0	186.0	0.0	.	Atlas-SNP
SLC16A5	9121	hgsc.bcm.edu	37	17	73096274	73096274	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC16A5-90	NM_001271765	exon5	c.C516T	p.F172F	TACCTTCCTTGTC	.	139.0	61.0	129.0	0.0	.	Atlas-SNP
TRIM47	91107	hgsc.bcm.edu	37	17	73871533	73871533	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TRIM47-659	NM_033452	exon5	c.C1224G	p.L408L	ACTCTCGAGGTCT	.	95.0	34.0	114.0	0.0	.	Atlas-SNP
UBE2O	63893	hgsc.bcm.edu	37	17	74392628	74392628	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	UBE2O-272	NM_022066	exon14	c.G2390T	p.G797V	ATCAGCCCGGCCA	.	46.0	15.0	48.0	0.0	.	Atlas-SNP
RBFOX3	146713	hgsc.bcm.edu	37	17	77111616	77111616	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001082575	exon5	c.G182T	p.G61V	CTGGCCTCGGAGC	.	22.0	6.0	26.0	0.0	.	Atlas-SNP
RBFOX3	146713	hgsc.bcm.edu	37	17	77111617	77111617	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001082575	exon5	c.G181T	p.G61W	TGGCCTCGGAGCC	.	22.0	6.0	25.0	0.0	.	Atlas-SNP
MYBBP1A	10514	hgsc.bcm.edu	37	17	4453405	4453405	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYBBP1A-92	NM_014520	exon9	c.1268delT	p.V423fs	.	.	161.0	41.0	215.0	0.0	.	Atlas-Indel
GIT1	28964	hgsc.bcm.edu	37	17	27901828	27901830	+	In_Frame_Del	DEL	GGC	GGC	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	GGC	GGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GIT1-251	NM_014030	exon20	c.2177_2179del	p.726_727del	.	.	57.0	10.0	54.0	0.0	.	Atlas-Indel
EFTUD2	9343	hgsc.bcm.edu	37	17	42930702	42930703	+	Frame_Shift_Ins	INS	-	-	TC	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EFTUD2-91	NM_001142605	exon24	c.2418_2419insGA	p.D806fs	.	.	111.0	44.0	117.0	0.0	.	Atlas-Indel
KIF2B	84643	hgsc.bcm.edu	37	17	51900846	51900846	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIF2B-98	NM_032559	exon1	c.451delT	p.W151fs	.	.	74.0	29.0	69.0	0.0	.	Atlas-Indel
MYBBP1A	10514	hgsc.bcm.edu	37	17	4453405	4453406	+	Frame_Shift_Del	DEL	CC	CC	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYBBP1A-92	NM_001105538	exon9	c.1267_1268del	p.423_423del	.	.	163.0	29.0	214.0	0.0	.	Pindel
COLEC12	81035	hgsc.bcm.edu	37	18	321761	321761	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	COLEC12-92	NM_130386	exon9	c.C2110A	p.P704T	CTCCTGGCCCATG	.	57.0	30.0	60.0	0.0	.	Atlas-SNP
MYOM1	8736	hgsc.bcm.edu	37	18	3067394	3067394	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYOM1-94	NM_019856	exon37	c.G4636T	p.G1546C	ATTTGCCCGAGTC	.	166.0	39.0	126.0	0.0	.	Atlas-SNP
C18orf42	642597	hgsc.bcm.edu	37	18	5145576	5145576	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001145194	exon2	c.G195C	p.K65N	TTCGTGCTTCTTG	.	196.0	43.0	221.0	0.0	.	Atlas-SNP
ANKRD12	23253	hgsc.bcm.edu	37	18	9258888	9258888	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ANKRD12-92	NM_015208	exon9	c.C5623G	p.L1875V	TCATATCTCCTGG	.	164.0	45.0	177.0	0.0	.	Atlas-SNP
CIDEA	1149	hgsc.bcm.edu	37	18	12277152	12277152	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CIDEA-91	NM_001279	exon5	c.C543A	p.A181A	CTCCGCCCAGGTG	.	132.0	63.0	140.0	0.0	.	Atlas-SNP
PTPN2	5771	hgsc.bcm.edu	37	18	12817252	12817252	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PTPN2-652	NM_001207013	exon7	c.G677T	p.G226V	AAGGAGCCAGATT	.	203.0	93.0	204.0	0.0	.	Atlas-SNP
ANKRD30B	374860	hgsc.bcm.edu	37	18	14787090	14787090	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ANKRD30B-24	NM_001145029	exon15	c.G1725T	p.W575C	TTCTTGGGATTCT	.	132.0	52.0	154.0	0.0	.	Atlas-SNP
TTC39C	125488	hgsc.bcm.edu	37	18	21646036	21646036	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TTC39C-91	NM_001135993	exon3	c.A277G	p.T93A	AAAACCACAGAAA	.	151.0	73.0	183.0	0.0	.	Atlas-SNP
SS18	6760	hgsc.bcm.edu	37	18	23615884	23615884	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SS18-1968	NM_001007559	exon8	c.A884G	p.H295R	TCATTATGACCTA	.	51.0	20.0	69.0	0.0	.	Atlas-SNP
CDH2	1000	hgsc.bcm.edu	37	18	25565561	25565561	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CDH2-525	NM_001792	exon12	c.C1906A	p.P636T	CAAATGGTCCAGC	.	87.0	17.0	96.0	0.0	.	Atlas-SNP
CDH2	1000	hgsc.bcm.edu	37	18	25593747	25593747	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CDH2-525	NM_001792	exon3	c.C299A	p.A100D	AACTTGGCATGCT	.	75.0	19.0	77.0	0.0	.	Atlas-SNP
DSG1	1828	hgsc.bcm.edu	37	18	28906904	28906904	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DSG1-519	NM_001942	exon3	c.G152T	p.W51L	GTGAATGGATCAA	.	355.0	155.0	461.0	1.0	.	Atlas-SNP
DSG3	1830	hgsc.bcm.edu	37	18	29049291	29049291	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DSG3-98	NM_001944	exon12	c.C1876T	p.L626F	CTGCTCCTTGGTC	.	88.0	35.0	70.0	0.0	.	Atlas-SNP
ASXL3	80816	hgsc.bcm.edu	37	18	31323338	31323338	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ASXL3-49	NM_030632	exon12	c.C3526A	p.R1176R	CACCTCCGGGAGA	.	42.0	24.0	58.0	0.0	.	Atlas-SNP
ASXL3	80816	hgsc.bcm.edu	37	18	31325189	31325189	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ASXL3-49	NM_030632	exon12	c.G5377C	p.E1793Q	GCACCAGAGAGAA	.	65.0	11.0	93.0	0.0	.	Atlas-SNP
DTNA	1837	hgsc.bcm.edu	37	18	32431876	32431876	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DTNA-153	NM_001198938	exon13	c.C1255A	p.L419I	GCTGAGCTAGAAA	.	204.0	93.0	195.0	0.0	.	Atlas-SNP
KIAA1328	57536	hgsc.bcm.edu	37	18	34646889	34646889	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIAA1328-90	NM_020776	exon7	c.G613C	p.V205L	TCATCTGTGGAAC	.	202.0	43.0	181.0	0.0	.	Atlas-SNP
CELF4	56853	hgsc.bcm.edu	37	18	34853088	34853088	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CELF4-92	NM_001025089	exon7	c.G810C	p.A270A	GCCCTGCGCGACT	.	314.0	147.0	249.0	0.0	.	Atlas-SNP
PIK3C3	5289	hgsc.bcm.edu	37	18	39567811	39567811	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PIK3C3-1312	NM_002647	exon5	c.A567G	p.K189K	GGTGAAAGTAGAT	.	133.0	73.0	162.0	0.0	.	Atlas-SNP
SLC14A2	8170	hgsc.bcm.edu	37	18	43207111	43207111	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC14A2-93	NM_007163	exon4	c.A520T	p.R174W	CAAGACAGGTGGG	.	120.0	22.0	87.0	0.0	.	Atlas-SNP
SLC14A2	8170	hgsc.bcm.edu	37	18	43219733	43219733	+	Missense_Mutation	SNP	G	G	T	rs137884313	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC14A2-93	NM_007163	exon7	c.G866T	p.G289V	CTGTTGGGGTCGG	.	95.0	21.0	94.0	0.0	G|1.000;A|0.000	Atlas-SNP
EPG5	57724	hgsc.bcm.edu	37	18	43458387	43458387	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EPG5-580	NM_020964	exon34	c.A5896G	p.I1966V	GCTGAATGATTAC	.	62.0	14.0	54.0	0.0	.	Atlas-SNP
LOXHD1	125336	hgsc.bcm.edu	37	18	44104755	44104755	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001145472	exon12	c.C1323A	p.N441K	GTCCTCGTTGGTG	.	207.0	74.0	248.0	0.0	.	Atlas-SNP
TCEB3B	51224	hgsc.bcm.edu	37	18	44561326	44561326	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TCEB3B-156	NM_016427	exon1	c.C310T	p.Q104X	GGTCCTGAAGAGC	.	66.0	36.0	52.0	0.0	.	Atlas-SNP
ME2	4200	hgsc.bcm.edu	37	18	48458690	48458690	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ME2-90	NM_001168335	exon13	c.C1377G	p.V459V	GCGAGTCTTTACA	.	151.0	23.0	185.0	0.0	.	Atlas-SNP
DCC	1630	hgsc.bcm.edu	37	18	50278479	50278479	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DCC-225	NM_005215	exon2	c.C147G	p.A49A	TGATGCCGTCACA	.	57.0	8.0	66.0	0.0	.	Atlas-SNP
DCC	1630	hgsc.bcm.edu	37	18	50985607	50985607	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DCC-225	NM_005215	exon24	c.G3398C	p.R1133P	GGAAACGGGCCAC	.	61.0	22.0	80.0	0.0	.	Atlas-SNP
CDH20	28316	hgsc.bcm.edu	37	18	59221763	59221763	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CDH20-155	NM_031891	exon11	c.G2241T	p.T747T	CCAGACGTATATG	.	115.0	54.0	83.0	0.0	.	Atlas-SNP
SERPINB7	8710	hgsc.bcm.edu	37	18	61460444	61460444	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SERPINB7-226	NM_003784	exon4	c.C269A	p.S90Y	ATGCATCCCACAA	.	89.0	21.0	105.0	0.0	.	Atlas-SNP
SERPINB8	5271	hgsc.bcm.edu	37	18	61654266	61654266	+	Missense_Mutation	SNP	C	C	A	rs146637081	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SERPINB8-226	NM_002640	exon7	c.C879A	p.D293E	TTTTGACGAAGCC	.	153.0	66.0	140.0	0.0	C|1.000;G|0.000	Atlas-SNP
CDH7	1005	hgsc.bcm.edu	37	18	63476945	63476945	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CDH7-94	NM_004361	exon3	c.C216G	p.H72Q	GCTTCACTCTGAT	.	94.0	40.0	108.0	0.0	.	Atlas-SNP
CDH7	1005	hgsc.bcm.edu	37	18	63511216	63511216	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CDH7-94	NM_004361	exon7	c.A1150T	p.M384L	TACCCTATGGAGG	.	119.0	32.0	124.0	0.0	.	Atlas-SNP
CDH19	28513	hgsc.bcm.edu	37	18	64239377	64239377	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CDH19-516	NM_001271028	exon2	c.C65A	p.A22E	TCTGTTGCTCCAA	.	107.0	16.0	114.0	0.0	.	Atlas-SNP
CCDC102B	79839	hgsc.bcm.edu	37	18	66564598	66564598	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CCDC102B-93	NM_001093729	exon8	c.G1196T	p.R399I	AAAATAGATTAAG	.	49.0	8.0	56.0	0.0	.	Atlas-SNP
CCDC102B	79839	hgsc.bcm.edu	37	18	66721282	66721282	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CCDC102B-93	NM_001093729	exon10	c.A1450T	p.N484Y	TCCCTGAATCAGA	.	22.0	5.0	16.0	0.0	.	Atlas-SNP
NETO1	81832	hgsc.bcm.edu	37	18	70526196	70526196	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NETO1-94	NM_138999	exon4	c.C331A	p.P111T	TTATTGGAGAAAA	.	124.0	49.0	143.0	0.0	.	Atlas-SNP
ZNF407	55628	hgsc.bcm.edu	37	18	72775251	72775251	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF407-92	NM_017757	exon8	c.G5574T	p.P1858P	AGCGCCGCCCCCT	.	253.0	62.0	203.0	0.0	.	Atlas-SNP
CTDP1	9150	hgsc.bcm.edu	37	18	77475469	77475469	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CTDP1-90	NM_048368	exon8	c.G2009T	p.R670L	TCACTCGGCTGGT	.	112.0	46.0	70.0	0.0	.	Atlas-SNP
STK11	6794	hgsc.bcm.edu	37	19	1220443	1220443	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	STK11,NS,carcinoma,0	STK11-5227	NM_000455	exon4	c.C536G	p.P179R	TCAAGCCGGGGAA	.	183.0	107.0	169.0	1.0	.	Atlas-SNP
NFIC	4782	hgsc.bcm.edu	37	19	3449047	3449047	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NFIC-226	NM_001245004	exon7	c.A994T	p.K332X	ATGGACAAGTCAC	.	145.0	88.0	116.0	0.0	.	Atlas-SNP
PTPRS	5802	hgsc.bcm.edu	37	19	5239001	5239001	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PTPRS-357	NM_002850	exon13	c.G1778T	p.R593L	GCCAGGCGGAAGG	.	118.0	66.0	43.0	0.0	.	Atlas-SNP
MLLT1	4298	hgsc.bcm.edu	37	19	6214015	6214015	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MLLT1-658	NM_005934	exon9	c.G1342T	p.A448S	AGTCGGCGCTGTT	.	9.0	7.0	10.0	0.0	.	Atlas-SNP
KHSRP	8570	hgsc.bcm.edu	37	19	6416662	6416662	+	Splice_Site	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KHSRP-226	NM_003685	exon15	c.1328-1G>T	.	CGCCACCTGCAGA	.	78.0	43.0	87.0	0.0	.	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	37	19	9060203	9060203	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MUC16-566	NM_024690	exon3	c.C27243A	p.T9081T	TGTTTGGGTGGTA	.	115.0	71.0	196.0	0.0	.	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	37	19	9062539	9062539	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MUC16-566	NM_024690	exon3	c.G24907T	p.G8303C	CCAGGCCAGGGTT	.	94.0	54.0	145.0	0.0	.	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	37	19	9070334	9070334	+	Silent	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MUC16-566	NM_024690	exon3	c.T17112A	p.T5704T	GTGCGCAGTGTCT	.	188.0	104.0	271.0	0.0	.	Atlas-SNP
COL5A3	50509	hgsc.bcm.edu	37	19	10106750	10106750	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	COL5A3-99	NM_015719	exon15	c.G1525T	p.G509W	GTGGCCCTTCTGC	.	149.0	85.0	161.0	0.0	.	Atlas-SNP
SMARCA4	6597	hgsc.bcm.edu	37	19	11150201	11150201	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SMARCA4-1523	NM_001128849	exon30	c.G4238A	p.G1413D	AGCGTGGCCTTCA	.	65.0	39.0	74.0	0.0	.	Atlas-SNP
CACNA1A	773	hgsc.bcm.edu	37	19	13565966	13565966	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CACNA1A-67	NM_001127221	exon2	c.G354T	p.E118D	ATGCTGCTCCAGT	.	96.0	55.0	127.0	0.0	.	Atlas-SNP
SLC1A6	6511	hgsc.bcm.edu	37	19	15083539	15083539	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC1A6-186	NM_001272088	exon2	c.A184T	p.T62S	TGACCGTCAGCAG	.	321.0	145.0	227.0	1.0	.	Atlas-SNP
PGLYRP2	114770	hgsc.bcm.edu	37	19	15586650	15586650	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PGLYRP2-93	NM_052890	exon2	c.G831C	p.L277L	CCCATCCAGGGCG	.	55.0	12.0	59.0	0.0	.	Atlas-SNP
CYP4F3	4051	hgsc.bcm.edu	37	19	15752302	15752302	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CYP4F3-93	NM_001199209	exon2	c.G77A	p.G26E	TGGTTGGGGCCTC	.	121.0	69.0	133.0	0.0	.	Atlas-SNP
SIN3B	23309	hgsc.bcm.edu	37	19	16973222	16973222	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SIN3B-228	NM_015260	exon9	c.T1118A	p.F373Y	TGTCCTTCGCGCC	.	58.0	29.0	84.0	0.0	.	Atlas-SNP
MYO9B	4650	hgsc.bcm.edu	37	19	17303667	17303667	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYO9B-67	NM_001130065	exon21	c.A2924T	p.H975L	GTCGGCACTTCCT	.	154.0	93.0	107.0	0.0	.	Atlas-SNP
FAM129C	199786	hgsc.bcm.edu	37	19	17643172	17643172	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM129C-90	NM_173544	exon4	c.G380T	p.R127L	ACGGCCGCCTAGA	.	172.0	105.0	199.0	0.0	.	Atlas-SNP
ZNF90	7643	hgsc.bcm.edu	37	19	20228898	20228898	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF90-48	NM_007138	exon4	c.G535T	p.G179C	GAATGTGGCAAAG	.	54.0	21.0	62.0	0.0	.	Atlas-SNP
ZNF675	171392	hgsc.bcm.edu	37	19	23844980	23844980	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF675-228	NM_138330	exon3	c.C162T	p.T54T	CAGACAGGTGATC	.	36.0	17.0	45.0	0.0	.	Atlas-SNP
TSHZ3	57616	hgsc.bcm.edu	37	19	31767667	31767667	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TSHZ3-232	NM_020856	exon2	c.C3032G	p.T1011S	TGTTCGGTGGACA	.	198.0	112.0	316.0	0.0	.	Atlas-SNP
TSHZ3	57616	hgsc.bcm.edu	37	19	31768123	31768123	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TSHZ3-232	NM_020856	exon2	c.C2576A	p.T859K	TTTGACGTGTGGC	.	106.0	61.0	157.0	0.0	.	Atlas-SNP
TSHZ3	57616	hgsc.bcm.edu	37	19	31769009	31769009	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TSHZ3-232	NM_020856	exon2	c.C1690G	p.L564V	AGCCCAGGGACAA	.	156.0	70.0	211.0	0.0	.	Atlas-SNP
TSHZ3	57616	hgsc.bcm.edu	37	19	31769010	31769010	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TSHZ3-232	NM_020856	exon2	c.C1689A	p.S563S	GCCCAGGGACAAC	.	156.0	70.0	215.0	0.0	.	Atlas-SNP
ZNF599	148103	hgsc.bcm.edu	37	19	35260460	35260460	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF599-92	NM_001007248	exon2	c.G19T	p.A7S	CTAATGCCTGGGA	.	58.0	36.0	92.0	0.0	.	Atlas-SNP
MAG	4099	hgsc.bcm.edu	37	19	35786525	35786525	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MAG-947	NM_080600	exon4	c.G56T	p.G19V	CCCGAGGGGGTCA	.	57.0	30.0	69.0	0.0	.	Atlas-SNP
ZFP82	284406	hgsc.bcm.edu	37	19	36884174	36884174	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZFP82-91	NM_133466	exon5	c.T1068C	p.H356H	TCTCTGATGGAGT	.	48.0	30.0	77.0	0.0	.	Atlas-SNP
ZNF382	84911	hgsc.bcm.edu	37	19	37100830	37100830	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF382-90	NM_001256838	exon3	c.G11T	p.G4V	TACAGGGATCAGT	.	157.0	85.0	172.0	0.0	.	Atlas-SNP
SIPA1L3	23094	hgsc.bcm.edu	37	19	38572624	38572624	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SIPA1L3-91	NM_015073	exon3	c.G419A	p.R140Q	TCCACCGACTCTC	.	84.0	23.0	120.0	0.0	.	Atlas-SNP
RYR1	6261	hgsc.bcm.edu	37	19	38954426	38954426	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RYR1-100	NM_001042723	exon22	c.G2722T	p.D908Y	CTTGTGGACTTCC	.	88.0	52.0	107.0	0.0	.	Atlas-SNP
MAP4K1	11184	hgsc.bcm.edu	37	19	39103252	39103252	+	Silent	SNP	T	T	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MAP4K1-980	NM_001042600	exon9	c.A664C	p.R222R	CCTACCTGAGAGG	.	38.0	24.0	52.0	0.0	.	Atlas-SNP
PAPL	0	hgsc.bcm.edu	37	19	39589631	39589631	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001004318	exon4	c.C354A	p.S118R	CTGGAGCCGTCGG	.	28.0	16.0	50.0	0.0	.	Atlas-SNP
SUPT5H	6829	hgsc.bcm.edu	37	19	39959793	39959793	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SUPT5H-94	NM_003169	exon14	c.G1218T	p.E406D	CCTGGAGGTGGTG	.	146.0	89.0	223.0	1.0	.	Atlas-SNP
SERTAD1	29950	hgsc.bcm.edu	37	19	40929113	40929113	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SERTAD1-226	NM_013376	exon2	c.C341T	p.S114F	GCCATGGAGGCTG	.	138.0	16.0	95.0	0.0	.	Atlas-SNP
NUMBL	9253	hgsc.bcm.edu	37	19	41173883	41173883	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NUMBL-637	NM_004756	exon10	c.G1320A	p.Q440Q	CTGCTGCTGCTGC	.	58.0	4.0	51.0	0.0	.	Atlas-SNP
NUMBL	9253	hgsc.bcm.edu	37	19	41173904	41173904	+	Silent	SNP	T	T	C	rs79658769		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NUMBL-637	NM_004756	exon10	c.A1299G	p.Q433Q	TTGCTGTTGCTGC	.	49.0	11.0	49.0	0.0	C|1.000;|0.000	Atlas-SNP
PSG9	5678	hgsc.bcm.edu	37	19	43766262	43766262	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PSG9-92	NM_002784	exon3	c.C459A	p.S153R	GTTGCTGCTGGAG	.	73.0	30.0	118.0	0.0	.	Atlas-SNP
DACT3	147906	hgsc.bcm.edu	37	19	47156013	47156013	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_145056	exon3	c.T403A	p.C135S	CCCCACAGAAGGT	.	39.0	23.0	69.0	0.0	.	Atlas-SNP
MEIS3	56917	hgsc.bcm.edu	37	19	47920493	47920493	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MEIS3-90	NM_020160	exon2	c.C127G	p.P43A	GCAGGGGCTGGGG	.	112.0	64.0	87.0	0.0	.	Atlas-SNP
SLC8A2	6543	hgsc.bcm.edu	37	19	47951225	47951225	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC8A2-94	NM_015063	exon4	c.G1604A	p.S535N	CACTCGCTCACGT	.	63.0	35.0	18.0	0.0	.	Atlas-SNP
RPL13A	23521	hgsc.bcm.edu	37	19	49994074	49994074	+	Missense_Mutation	SNP	C	C	G	rs1061320	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RPL13A-90	NM_012423	exon5	c.C295G	p.L99V	GCCGCTCTGGACC	.	201.0	125.0	238.0	0.0	C|1.000;|0.000	Atlas-SNP
IL4I1	259307	hgsc.bcm.edu	37	19	50404912	50404912	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IL4I1-523	NM_001258018	exon4	c.C63A	p.P21P	CCTCTGGGGGGCT	.	81.0	54.0	60.0	0.0	.	Atlas-SNP
KLK7	5650	hgsc.bcm.edu	37	19	51480918	51480918	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KLK7-650	NM_005046	exon6	c.A636T	p.R212S	GGTACCTCTGCAC	.	99.0	57.0	113.0	0.0	.	Atlas-SNP
SIGLEC8	27181	hgsc.bcm.edu	37	19	51958781	51958781	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SIGLEC8-94	NM_014442	exon4	c.G942T	p.E314D	AGGCAGCTCCAGC	.	152.0	93.0	175.0	1.0	.	Atlas-SNP
SIGLEC8	27181	hgsc.bcm.edu	37	19	51961365	51961365	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SIGLEC8-94	NM_014442	exon1	c.C277G	p.Q93E	GGCCCTGGGTCTC	.	177.0	108.0	280.0	1.0	.	Atlas-SNP
FPR2	2358	hgsc.bcm.edu	37	19	52272299	52272299	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FPR2-501	NM_001462	exon2	c.C388G	p.P130A	CTGCATCCAGTCT	.	106.0	66.0	132.0	0.0	.	Atlas-SNP
TTYH1	57348	hgsc.bcm.edu	37	19	54930366	54930366	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TTYH1-90	NM_001005367	exon2	c.T191C	p.V64A	TCGCTGTCTACCT	.	57.0	39.0	59.0	0.0	.	Atlas-SNP
NLRP7	199713	hgsc.bcm.edu	37	19	55451819	55451819	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NLRP7-291	NM_139176	exon4	c.G368T	p.W123L	TTTCTCCATCCTT	.	40.0	26.0	41.0	0.0	.	Atlas-SNP
NLRP4	147945	hgsc.bcm.edu	37	19	56369475	56369475	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NLRP4-216	NM_134444	exon3	c.G716C	p.G239A	AGGGCGGCTTGAA	.	109.0	64.0	146.0	0.0	.	Atlas-SNP
NLRP8	126205	hgsc.bcm.edu	37	19	56466706	56466706	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	NLRP8,NS,carcinoma,0	NLRP8-361	NM_176811	exon3	c.G1282T	p.V428F	GTGTTCGTCCGGT	.	88.0	47.0	126.0	0.0	.	Atlas-SNP
NLRP5	126206	hgsc.bcm.edu	37	19	56539330	56539330	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NLRP5-162	NM_153447	exon7	c.G1731C	p.E577D	CTGTGAGGAGTAC	.	143.0	81.0	157.0	0.0	.	Atlas-SNP
PEG3	5178	hgsc.bcm.edu	37	19	57334984	57334984	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PEG3-164	NM_001146186	exon2	c.C458A	p.P153Q	TGAGGTGGTGAGG	.	166.0	92.0	217.0	0.0	.	Atlas-SNP
A1BG	1	hgsc.bcm.edu	37	19	58864353	58864353	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	A1BG-90	NM_130786	exon3	c.G281A	p.R94H	CCCGAGCGGCAGC	.	90.0	25.0	121.0	0.0	.	Atlas-SNP
VAV1	7409	hgsc.bcm.edu	37	19	6853959	6853959	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	VAV1-1276	NM_001258207	exon25	c.2237delT	p.V746fs	.	.	23.0	17.0	26.0	0.0	.	Atlas-Indel
AURKC	6795	hgsc.bcm.edu	37	19	57746327	57746327	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	AURKC-1560	NM_001015878	exon6	c.659delT	p.V220fs	.	.	136.0	61.0	186.0	0.0	.	Atlas-Indel
TTLL10	254173	hgsc.bcm.edu	37	1	1117120	1117120	+	Splice_Site	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TTLL10-153	NM_001130045	exon9	c.756-1G>A	.	GCTGCAGGCTGGA	.	392.0	94.0	298.0	0.0	.	Atlas-SNP
CCNL2	81669	hgsc.bcm.edu	37	1	1334033	1334033	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CCNL2-70	NM_030937	exon2	c.C307T	p.Q103X	ACACCTGCCCGGT	.	245.0	124.0	215.0	0.0	.	Atlas-SNP
PANK4	55229	hgsc.bcm.edu	37	1	2440355	2440355	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PANK4-158	NM_018216	exon19	c.G2253T	p.A751A	CAGCCACGCGTTC	.	220.0	104.0	77.0	0.0	.	Atlas-SNP
CHD5	26038	hgsc.bcm.edu	37	1	6196856	6196856	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CHD5-719	NM_015557	exon16	c.C2506T	p.L836L	AGCCCAGGATGGC	.	158.0	37.0	104.0	0.0	.	Atlas-SNP
PER3	8863	hgsc.bcm.edu	37	1	7869982	7869982	+	Nonsense_Mutation	SNP	C	C	A	rs140055805	byfrequency;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PER3-93	NM_016831	exon11	c.C1269A	p.Y423X	CGGCTACGGGAGC	.	297.0	143.0	215.0	1.0	C|1.000;T|0.000	Atlas-SNP
VPS13D	55187	hgsc.bcm.edu	37	1	12339596	12339596	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	VPS13D-95	NM_018156	exon20	c.G4491A	p.L1497L	TAAACTGGAGAAG	.	169.0	49.0	156.0	0.0	.	Atlas-SNP
PRAMEF1	65121	hgsc.bcm.edu	37	1	12854331	12854331	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PRAMEF1-22	NM_023013	exon3	c.G555C	p.L185L	TAAGCTGGTCAAT	.	289.0	135.0	261.0	0.0	.	Atlas-SNP
PRAMEF11	440560	hgsc.bcm.edu	37	1	12887562	12887562	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001146344	exon3	c.C295A	p.P99T	TCCTTGGACAGTC	.	72.0	21.0	43.0	0.0	.	Atlas-SNP
PLA2G5	5322	hgsc.bcm.edu	37	1	20416346	20416346	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PLA2G5-515	NM_000929	exon4	c.C250T	p.Q84X	CGCACACAGTCCT	.	181.0	48.0	148.0	0.0	.	Atlas-SNP
VWA5B1	127731	hgsc.bcm.edu	37	1	20669628	20669628	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001039500	exon16	c.C2368A	p.P790T	GACCCCCCAGCCG	.	221.0	57.0	70.0	0.0	.	Atlas-SNP
HSPG2	3339	hgsc.bcm.edu	37	1	22179236	22179236	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HSPG2-141	NM_005529	exon52	c.A6681T	p.L2227L	GGCCTCTAGGGGG	.	171.0	43.0	110.0	0.0	.	Atlas-SNP
CNKSR1	10256	hgsc.bcm.edu	37	1	26509747	26509747	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CNKSR1-846	NM_006314	exon7	c.G684T	p.Q228H	CACCCAGGTGAGA	.	317.0	80.0	277.0	0.0	.	Atlas-SNP
WDTC1	23038	hgsc.bcm.edu	37	1	27627876	27627876	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	WDTC1-91	NM_015023	exon13	c.G1389A	p.P463P	ATTTCCGGAGCAG	.	119.0	24.0	119.0	0.0	.	Atlas-SNP
MECR	51102	hgsc.bcm.edu	37	1	29520573	29520573	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MECR-91	NM_001024732	exon10	c.G855T	p.M285I	GGGCTTCATGGAG	.	102.0	29.0	76.0	0.0	.	Atlas-SNP
PUM1	9698	hgsc.bcm.edu	37	1	31447604	31447604	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PUM1-92	NM_001020658	exon10	c.G1400T	p.G467V	TAGACTCCCCAGG	.	116.0	46.0	85.0	0.0	.	Atlas-SNP
PTP4A2	8073	hgsc.bcm.edu	37	1	32374453	32374453	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PTP4A2-650	NM_001195101	exon4	c.G411A	p.X137X	TTCCTTCTACTGA	.	92.0	41.0	91.0	0.0	.	Atlas-SNP
LCK	3932	hgsc.bcm.edu	37	1	32741016	32741016	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LCK-1378	NM_001042771	exon5	c.G373T	p.E125X	GAGCCCGAACCGT	.	398.0	198.0	292.0	0.0	.	Atlas-SNP
HMGB4	127540	hgsc.bcm.edu	37	1	34329806	34329806	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HMGB4-90	NM_145205	exon2	c.T14A	p.I5N	AAGAAATCCAGCT	.	163.0	37.0	145.0	0.0	.	Atlas-SNP
C1orf94	84970	hgsc.bcm.edu	37	1	34662954	34662954	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	C1orf94-90	NM_001134734	exon2	c.C449A	p.S150Y	GCAGCTCTCCCGA	.	100.0	20.0	81.0	0.0	.	Atlas-SNP
C1orf94	84970	hgsc.bcm.edu	37	1	34663403	34663403	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	C1orf94-90	NM_032884	exon2	c.C328A	p.R110S	CCTGCACGTCCTG	.	107.0	53.0	101.0	0.0	.	Atlas-SNP
RSPO1	284654	hgsc.bcm.edu	37	1	38078537	38078537	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RSPO1-22	NM_001242909	exon7	c.G601A	p.A201T	TCCTGGCCAGGTT	.	95.0	27.0	94.0	0.0	.	Atlas-SNP
MACF1	23499	hgsc.bcm.edu	37	1	39549943	39549943	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MACF1-165	NM_012090	exon3	c.G53T	p.R18L	GTGAGCGGTCTTG	.	138.0	33.0	101.0	0.0	.	Atlas-SNP
MACF1	23499	hgsc.bcm.edu	37	1	39818684	39818684	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MACF1-165	NM_012090	exon40	c.A5019T	p.K1673N	GAGTAAAGCAGCA	.	64.0	29.0	66.0	0.0	.	Atlas-SNP
HIVEP3	59269	hgsc.bcm.edu	37	1	42045967	42045967	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HIVEP3-157	NM_024503	exon4	c.G4502T	p.S1501I	GACAGGCTGGACA	.	133.0	35.0	103.0	0.0	.	Atlas-SNP
HIVEP3	59269	hgsc.bcm.edu	37	1	42047294	42047294	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HIVEP3-157	NM_024503	exon4	c.T3175C	p.L1059L	CCTCCAACTCAGA	.	114.0	21.0	94.0	0.0	.	Atlas-SNP
PTPRF	5792	hgsc.bcm.edu	37	1	44063549	44063549	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PTPRF-232	NM_130440	exon12	c.G1944A	p.A648A	CGAGGCGGTGGAC	.	280.0	132.0	49.0	0.0	.	Atlas-SNP
PTPRF	5792	hgsc.bcm.edu	37	1	44063550	44063550	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PTPRF-232	NM_130440	exon12	c.G1945T	p.V649L	GAGGCGGTGGACG	.	277.0	130.0	49.0	0.0	.	Atlas-SNP
ELAVL4	1996	hgsc.bcm.edu	37	1	50610817	50610817	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ELAVL4-516	NM_001144774	exon2	c.C198T	p.F66F	TCTCTTCGGGAGC	.	187.0	73.0	181.0	0.0	.	Atlas-SNP
ELAVL4	1996	hgsc.bcm.edu	37	1	50659488	50659488	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ELAVL4-516	NM_001144774	exon4	c.G406T	p.V136F	CTCTATGTTAGCG	.	259.0	62.0	219.0	0.0	.	Atlas-SNP
ZFYVE9	9372	hgsc.bcm.edu	37	1	52740214	52740214	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZFYVE9-230	NM_007324	exon7	c.G2527C	p.D843H	CCTGAAGATGGCC	.	125.0	8.0	119.0	0.0	.	Atlas-SNP
WDR78	79819	hgsc.bcm.edu	37	1	67306280	67306280	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	WDR78-92	NM_207014	exon9	c.G1366A	p.E456K	CCTCCTCCTTCTT	.	143.0	38.0	98.0	0.0	.	Atlas-SNP
LRRC7	57554	hgsc.bcm.edu	37	1	70446116	70446116	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LRRC7-163	NM_020794	exon7	c.G652T	p.A218S	AATAATGCATTAC	.	72.0	25.0	74.0	0.0	.	Atlas-SNP
LRRC7	57554	hgsc.bcm.edu	37	1	70504166	70504166	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LRRC7-163	NM_020794	exon19	c.C2545A	p.P849T	AGAACCCCTAGTC	.	269.0	59.0	228.0	0.0	.	Atlas-SNP
SRSF11	9295	hgsc.bcm.edu	37	1	70701183	70701183	+	Splice_Site	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SRSF11-227	NM_001190987	exon6	c.541-1G>A	.	TTTACAGTCTCTT	.	31.0	7.0	40.0	0.0	.	Atlas-SNP
LRRIQ3	127255	hgsc.bcm.edu	37	1	74507594	74507594	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LRRIQ3-92	NM_001105659	exon7	c.G1021T	p.V341L	CATCCACAATTTC	.	31.0	9.0	19.0	0.0	.	Atlas-SNP
LHX8	431707	hgsc.bcm.edu	37	1	75622718	75622718	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LHX8-93	NM_001256114	exon8	c.C921A	p.P307P	CGTGCCCCAAGAT	.	237.0	58.0	205.0	0.0	.	Atlas-SNP
ASB17	127247	hgsc.bcm.edu	37	1	76397853	76397853	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ASB17-227	NM_080868	exon1	c.T124G	p.C42G	CGTAACAGTGATA	.	166.0	38.0	121.0	0.0	.	Atlas-SNP
ST6GALNAC3	256435	hgsc.bcm.edu	37	1	76877898	76877898	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ST6GALNAC3-95	NM_152996	exon3	c.C419T	p.P140L	AAAACCCTGATTA	.	198.0	90.0	189.0	0.0	.	Atlas-SNP
AK5	26289	hgsc.bcm.edu	37	1	77759610	77759610	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	AK5-227	NM_012093	exon3	c.C302A	p.P101H	TTGATCCTACCAG	.	161.0	21.0	157.0	0.0	.	Atlas-SNP
AK5	26289	hgsc.bcm.edu	37	1	77987587	77987587	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	AK5-227	NM_012093	exon12	c.T1309A	p.Y437N	GACGGCTATCCTC	.	90.0	43.0	57.0	0.0	.	Atlas-SNP
LPHN2	23266	hgsc.bcm.edu	37	1	82372734	82372734	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LPHN2-525	NM_012302	exon3	c.G106T	p.V36L	GGGCTGGTGAGGC	.	110.0	54.0	85.0	0.0	.	Atlas-SNP
ODF2L	57489	hgsc.bcm.edu	37	1	86841918	86841918	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ODF2L-69	NM_020729	exon8	c.C808G	p.Q270E	ATACCTGATCTCT	.	68.0	16.0	61.0	0.0	.	Atlas-SNP
GBP4	115361	hgsc.bcm.edu	37	1	89652054	89652054	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GBP4-90	NM_052941	exon10	c.C1669A	p.L557I	CTCTGAGAAGGTT	.	56.0	13.0	63.0	0.0	.	Atlas-SNP
HFM1	164045	hgsc.bcm.edu	37	1	91866610	91866610	+	Silent	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HFM1-112	NM_001017975	exon2	c.T30A	p.S10S	TTCCAAAGAAAAC	.	132.0	70.0	146.0	0.0	.	Atlas-SNP
TGFBR3	7049	hgsc.bcm.edu	37	1	92182149	92182149	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TGFBR3-93	NM_001195683	exon11	c.G1680T	p.L560L	GGTGAACAGGGAA	.	226.0	67.0	223.0	0.0	.	Atlas-SNP
BTBD8	284697	hgsc.bcm.edu	37	1	92568096	92568096	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BTBD8-91	NM_183242	exon3	c.G414T	p.M138I	GATAATGGAGATT	.	121.0	57.0	125.0	0.0	.	Atlas-SNP
SNX7	51375	hgsc.bcm.edu	37	1	99164270	99164270	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SNX7-229	NM_152238	exon5	c.G682A	p.D228N	TATTTTGATGAAA	.	36.0	8.0	40.0	0.0	.	Atlas-SNP
LPPR4	0	hgsc.bcm.edu	37	1	99764707	99764707	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LPPR4-93	NM_014839	exon4	c.A655T	p.N219Y	TCTCTGAATGTAT	.	153.0	30.0	146.0	0.0	.	Atlas-SNP
LPPR4	0	hgsc.bcm.edu	37	1	99771539	99771539	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LPPR4-93	NM_014839	exon7	c.C1265T	p.T422I	CCAATACCCCATC	.	140.0	43.0	150.0	0.0	.	Atlas-SNP
LPPR4	0	hgsc.bcm.edu	37	1	99772258	99772258	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LPPR4-93	NM_014839	exon7	c.G1984T	p.E662X	ACTTACGAGCTCA	.	243.0	120.0	255.0	0.0	.	Atlas-SNP
SASS6	163786	hgsc.bcm.edu	37	1	100588833	100588833	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SASS6-70	NM_194292	exon3	c.C139T	p.R47C	TCAGACGAATAAC	.	83.0	38.0	91.0	0.0	.	Atlas-SNP
TRMT13	54482	hgsc.bcm.edu	37	1	100606445	100606445	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_019083	exon7	c.T539G	p.L180R	AGTTACTTGGTCC	.	83.0	32.0	95.0	0.0	.	Atlas-SNP
CDC14A	8556	hgsc.bcm.edu	37	1	100964629	100964629	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CDC14A-290	NM_033312	exon15	c.G1566T	p.Q522H	CTCCCAGCCAACT	.	172.0	44.0	137.0	0.0	.	Atlas-SNP
NTNG1	22854	hgsc.bcm.edu	37	1	108023431	108023431	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NTNG1-140	NM_001113228	exon8	c.T1412A	p.L471Q	CCACGCTGCTGGG	.	89.0	34.0	38.0	0.0	.	Atlas-SNP
VAV3	10451	hgsc.bcm.edu	37	1	108138963	108138963	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	VAV3-1339	NM_006113	exon25	c.G2221T	p.E741X	CAAGTTCCTTTGG	.	59.0	12.0	51.0	0.0	.	Atlas-SNP
VAV3	10451	hgsc.bcm.edu	37	1	108417589	108417589	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	VAV3-1339	NM_006113	exon2	c.G255T	p.T85T	TCCAAACGTCTCA	.	172.0	31.0	192.0	0.0	.	Atlas-SNP
GPR61	83873	hgsc.bcm.edu	37	1	110085990	110085990	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPR61-91	NM_031936	exon2	c.C346T	p.R116C	GCCTGCCGCCTCT	.	97.0	49.0	99.0	0.0	.	Atlas-SNP
KCNC4	3749	hgsc.bcm.edu	37	1	110766353	110766353	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KCNC4-154	NM_004978	exon2	c.C1446A	p.A482A	CCTGGCCATGGCC	.	128.0	25.0	159.0	0.0	.	Atlas-SNP
VANGL1	81839	hgsc.bcm.edu	37	1	116206308	116206308	+	Silent	SNP	G	G	T	rs186509771	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	VANGL1-226	NM_001172411	exon4	c.G225T	p.T75T	CACCACGGCCATC	.	124.0	33.0	133.0	0.0	G|0.999;A|0.000	Atlas-SNP
PDE4DIP	9659	hgsc.bcm.edu	37	1	144852481	144852481	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PDE4DIP-663	NM_001198832	exon46	c.C6700A	p.L2234M	ATGGCAGAGCCCT	.	102.0	38.0	44.0	0.0	.	Atlas-SNP
PDE4DIP	9659	hgsc.bcm.edu	37	1	144854656	144854656	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PDE4DIP-663	NM_001198832	exon44	c.G6496T	p.G2166X	ATTCTCCCTGGAT	.	225.0	29.0	155.0	0.0	.	Atlas-SNP
PDE4DIP	9659	hgsc.bcm.edu	37	1	144865885	144865885	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PDE4DIP-663	NM_001198832	exon37	c.C5377G	p.Q1793E	AGAGCTGAGGTAT	.	221.0	15.0	196.0	0.0	.	Atlas-SNP
ITGA10	8515	hgsc.bcm.edu	37	1	145533058	145533058	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ITGA10-231	NM_003637	exon11	c.G1153A	p.G385R	CAGGATGGGATTC	.	74.0	25.0	44.0	0.0	.	Atlas-SNP
GJA8	2703	hgsc.bcm.edu	37	1	147380254	147380254	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GJA8-138	NM_005267	exon2	c.C172T	p.Q58X	ACCCAGCAGCCTG	.	270.0	75.0	118.0	0.0	.	Atlas-SNP
POGZ	23126	hgsc.bcm.edu	37	1	151402135	151402135	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	POGZ-93	NM_001194938	exon4	c.G353C	p.G118A	ACAATCCCAACCT	.	152.0	31.0	71.0	0.0	.	Atlas-SNP
RPTN	126638	hgsc.bcm.edu	37	1	152129433	152129433	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RPTN-68	NM_001122965	exon3	c.C142T	p.P48S	CATTTGGTCTCTG	.	107.0	27.0	67.0	0.0	.	Atlas-SNP
FLG	2312	hgsc.bcm.edu	37	1	152276700	152276700	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FLG-106	NM_002016	exon3	c.G10662T	p.R3554S	AGACCACCTCTCA	.	403.0	51.0	225.0	0.0	.	Atlas-SNP
FLG	2312	hgsc.bcm.edu	37	1	152280069	152280069	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FLG-106	NM_002016	exon3	c.C7293A	p.T2431T	GGTCCCGGTCCGT	.	604.0	308.0	331.0	1.0	.	Atlas-SNP
FLG2	388698	hgsc.bcm.edu	37	1	152323875	152323875	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FLG2-151	NM_001014342	exon3	c.C6387A	p.A2129A	AGATCTGGCTTGG	.	516.0	218.0	341.0	1.0	.	Atlas-SNP
FLG2	388698	hgsc.bcm.edu	37	1	152326364	152326364	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FLG2-151	NM_001014342	exon3	c.T3898A	p.Y1300N	TTGGGTAGTGAGA	.	715.0	182.0	401.0	1.0	.	Atlas-SNP
FLG2	388698	hgsc.bcm.edu	37	1	152328752	152328752	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FLG2-151	NM_001014342	exon3	c.G1510T	p.G504C	CAAAGCCAGAGGA	.	408.0	32.0	259.0	0.0	.	Atlas-SNP
FLG2	388698	hgsc.bcm.edu	37	1	152329711	152329711	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FLG2-151	NM_001014342	exon3	c.C551T	p.S184F	CAGCTGGACCTGT	.	190.0	43.0	146.0	0.0	.	Atlas-SNP
PGLYRP4	57115	hgsc.bcm.edu	37	1	153303417	153303417	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PGLYRP4-94	NM_020393	exon9	c.A948G	p.I316M	GGGTGGTATACCT	.	193.0	20.0	120.0	0.0	.	Atlas-SNP
TMEM79	84283	hgsc.bcm.edu	37	1	156255405	156255405	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TMEM79-90	NM_032323	exon2	c.G388T	p.V130L	GCCTTCGTGCCTA	.	299.0	35.0	163.0	0.0	.	Atlas-SNP
TSACC	128229	hgsc.bcm.edu	37	1	156316635	156316635	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_144627	exon4	c.C240T	p.A80A	GCTCGCCCAACAA	.	315.0	89.0	175.0	0.0	.	Atlas-SNP
FCRL4	83417	hgsc.bcm.edu	37	1	157559043	157559043	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FCRL4-229	NM_031282	exon3	c.G258A	p.Q86Q	CCGGGCCTGGCAT	.	280.0	140.0	165.0	0.0	.	Atlas-SNP
CD5L	922	hgsc.bcm.edu	37	1	157804410	157804410	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CD5L-91	NM_005894	exon4	c.C505A	p.L169I	CCCGGAGGCTCCA	.	122.0	30.0	101.0	0.0	.	Atlas-SNP
OR10T2	128360	hgsc.bcm.edu	37	1	158368349	158368349	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR10T2-70	NM_001004475	exon1	c.G908T	p.R303I	AGAACTCTTTTCA	.	153.0	16.0	85.0	0.0	.	Atlas-SNP
OR10T2	128360	hgsc.bcm.edu	37	1	158369178	158369178	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR10T2-70	NM_001004475	exon1	c.C79A	p.L27M	AAAGCAGCAGCTG	.	105.0	60.0	67.0	0.0	.	Atlas-SNP
OR10K2	391107	hgsc.bcm.edu	37	1	158390612	158390612	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR10K2-69	NM_001004476	exon1	c.C45G	p.L15L	GAAGCCGAGGAAG	.	184.0	53.0	114.0	0.0	.	Atlas-SNP
OR10K1	391109	hgsc.bcm.edu	37	1	158435408	158435408	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR10K1-69	NM_001004473	exon1	c.C57G	p.S19S	CTCATCCCTGGCC	.	282.0	75.0	197.0	0.0	.	Atlas-SNP
SPTA1	6708	hgsc.bcm.edu	37	1	158589090	158589090	+	Missense_Mutation	SNP	C	C	A	rs202169454	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SPTA1-142	NM_003126	exon45	c.G6452T	p.R2151I	ACCTGTCTTGCCT	.	414.0	43.0	300.0	0.0	C|0.999;T|0.001	Atlas-SNP
SPTA1	6708	hgsc.bcm.edu	37	1	158590083	158590083	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SPTA1-142	NM_003126	exon44	c.C6294A	p.D2098E	TTTAAAGTCTGCT	.	255.0	35.0	170.0	0.0	.	Atlas-SNP
SPTA1	6708	hgsc.bcm.edu	37	1	158592778	158592778	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SPTA1-142	NM_003126	exon43	c.C6115G	p.Q2039E	CCTTCTGTAGAGG	.	121.0	27.0	88.0	0.0	.	Atlas-SNP
SPTA1	6708	hgsc.bcm.edu	37	1	158606464	158606464	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SPTA1-142	NM_003126	exon37	c.G5277T	p.E1759D	CTCCCCCTCTAGG	.	112.0	29.0	87.0	0.0	.	Atlas-SNP
SPTA1	6708	hgsc.bcm.edu	37	1	158653268	158653268	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SPTA1-142	NM_003126	exon3	c.C283A	p.Q95K	GGGATTGATGCTT	.	155.0	60.0	112.0	0.0	.	Atlas-SNP
OR6K2	81448	hgsc.bcm.edu	37	1	158670301	158670301	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR6K2-69	NM_001005279	exon1	c.G142T	p.V48L	GGACCACTGTGAT	.	243.0	75.0	168.0	0.0	.	Atlas-SNP
OR6N1	128372	hgsc.bcm.edu	37	1	158735697	158735697	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR6N1-69	NM_001005185	exon1	c.A776G	p.Y259C	TGCACATACATGG	.	368.0	178.0	213.0	1.0	.	Atlas-SNP
OR6N2	81442	hgsc.bcm.edu	37	1	158747067	158747067	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR6N2-68	NM_001005278	exon1	c.A359T	p.Y120F	CTATCATAGGCCA	.	380.0	54.0	293.0	0.0	.	Atlas-SNP
CADM3	57863	hgsc.bcm.edu	37	1	159141616	159141616	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CADM3-92	NM_021189	exon1	c.C61A	p.P21T	TGGGCGCCCGGCG	.	72.0	11.0	12.0	0.0	.	Atlas-SNP
DARC	2532	hgsc.bcm.edu	37	1	159175764	159175764	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DARC-659	NM_002036	exon2	c.C535T	p.L179L	GCTGCCCTACTGA	.	184.0	37.0	121.0	0.0	.	Atlas-SNP
APCS	325	hgsc.bcm.edu	37	1	159558001	159558001	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	APCS-154	NM_001639	exon2	c.T175C	p.Y59H	CGAGCCTATAGTG	.	87.0	16.0	41.0	0.0	.	Atlas-SNP
FCRL6	343413	hgsc.bcm.edu	37	1	159779392	159779392	+	Missense_Mutation	SNP	C	C	G	rs146386650	byfrequency;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FCRL6-93	NM_001004310	exon5	c.C805G	p.Q269E	TCAGAACAGGATG	.	220.0	58.0	140.0	0.0	C|1.000;T|0.000	Atlas-SNP
F11R	50848	hgsc.bcm.edu	37	1	160970019	160970019	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	F11R-92	NM_016946	exon5	c.G508T	p.G170W	CTATCCCATCTTT	.	173.0	69.0	85.0	0.0	.	Atlas-SNP
FCGR3A	2214	hgsc.bcm.edu	37	1	161519625	161519625	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FCGR3A-91	NM_001127592	exon1	c.G10T	p.G4W	CAGCCCCTCCACC	.	302.0	171.0	192.0	0.0	.	Atlas-SNP
OLFML2B	25903	hgsc.bcm.edu	37	1	161967901	161967901	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OLFML2B-69	NM_015441	exon6	c.A1188T	p.Q396H	GGTTGTTTGGAGT	.	204.0	32.0	94.0	0.0	.	Atlas-SNP
OLFML2B	25903	hgsc.bcm.edu	37	1	161987209	161987209	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OLFML2B-69	NM_015441	exon3	c.G527T	p.R176L	TCCACTCGCCCCA	.	124.0	36.0	92.0	0.0	.	Atlas-SNP
NOS1AP	9722	hgsc.bcm.edu	37	1	162313643	162313643	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NOS1AP-228	NM_001164757	exon6	c.G457T	p.V153F	AGAATCGTTCGGA	.	434.0	90.0	301.0	0.0	.	Atlas-SNP
C1orf111	284680	hgsc.bcm.edu	37	1	162345173	162345173	+	Missense_Mutation	SNP	G	G	C	rs139605225	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	C1orf111-69	NM_182581	exon2	c.C124G	p.P42A	CAGTGGGTACTGC	.	374.0	28.0	204.0	0.0	G|0.999;T|0.000	Atlas-SNP
HSD17B7	51478	hgsc.bcm.edu	37	1	162762484	162762484	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HSD17B7-91	NM_016371	exon2	c.C71T	p.A24V	TGCTGGCGGAAGA	.	173.0	22.0	132.0	0.0	.	Atlas-SNP
HSD17B7	51478	hgsc.bcm.edu	37	1	162766425	162766425	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HSD17B7-91	NM_016371	exon3	c.C290T	p.P97L	CTAATCCACAACT	.	145.0	19.0	121.0	0.0	.	Atlas-SNP
LMX1A	4009	hgsc.bcm.edu	37	1	165322434	165322434	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LMX1A-92	NM_177398	exon3	c.C142T	p.L48L	GCCGCAGCAGAAA	.	169.0	68.0	87.0	0.0	.	Atlas-SNP
FAM78B	149297	hgsc.bcm.edu	37	1	166039894	166039894	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM78B-91	NM_001017961	exon2	c.C370A	p.L124M	CAACCAGGGTCAC	.	163.0	25.0	84.0	0.0	.	Atlas-SNP
POGK	57645	hgsc.bcm.edu	37	1	166816741	166816741	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	POGK-91	NM_017542	exon4	c.C270A	p.F90L	CCCATTCCCTAAG	.	147.0	18.0	95.0	0.0	.	Atlas-SNP
MAEL	84944	hgsc.bcm.edu	37	1	166962004	166962004	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MAEL-91	NM_032858	exon4	c.C407A	p.P136H	TCCTCCCTTGTGA	.	41.0	5.0	25.0	0.0	.	Atlas-SNP
DUSP27	92235	hgsc.bcm.edu	37	1	167086597	167086597	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DUSP27-71	NM_001080426	exon3	c.G238T	p.E80X	GACGCAGAGTGTC	.	201.0	113.0	138.0	0.0	.	Atlas-SNP
DUSP27	92235	hgsc.bcm.edu	37	1	167096341	167096341	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DUSP27-71	NM_001080426	exon5	c.C1973A	p.P658H	GCATTCCCCTGTC	.	416.0	64.0	255.0	0.0	.	Atlas-SNP
DUSP27	92235	hgsc.bcm.edu	37	1	167096491	167096491	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DUSP27-71	NM_001080426	exon5	c.C2123A	p.P708H	CCCTGCCTAACCT	.	274.0	119.0	161.0	0.0	.	Atlas-SNP
RCSD1	92241	hgsc.bcm.edu	37	1	167659302	167659302	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RCSD1-517	NM_052862	exon4	c.C215A	p.A72E	CCAATGCGAGCCA	.	256.0	31.0	157.0	0.0	.	Atlas-SNP
XCL1	6375	hgsc.bcm.edu	37	1	168550362	168550362	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	XCL1-90	NM_002995	exon3	c.C249A	p.S83R	CAGGAGCATGGAC	.	477.0	173.0	326.0	0.0	.	Atlas-SNP
KIFAP3	22920	hgsc.bcm.edu	37	1	170015874	170015874	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIFAP3-91	NM_014970	exon3	c.C298T	p.R100C	AATCACGGCGGTT	.	278.0	58.0	161.0	0.0	.	Atlas-SNP
PRRX1	5396	hgsc.bcm.edu	37	1	170633519	170633519	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PRRX1-659	NM_006902	exon1	c.G160C	p.D54H	CAGGCGGATGAGA	.	616.0	72.0	177.0	0.0	.	Atlas-SNP
TNN	63923	hgsc.bcm.edu	37	1	175046899	175046899	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TNN-138	NM_022093	exon2	c.G345T	p.L115L	GAAGCTGGAGGAA	.	459.0	126.0	311.0	0.0	.	Atlas-SNP
TNN	63923	hgsc.bcm.edu	37	1	175092664	175092664	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TNN-138	NM_022093	exon12	c.A2779T	p.R927W	GAGACCAGGGAGG	.	444.0	100.0	309.0	0.0	.	Atlas-SNP
PAPPA2	60676	hgsc.bcm.edu	37	1	176526124	176526124	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PAPPA2-548	NM_020318	exon2	c.G666T	p.W222C	ACCTTGGCCCAAG	.	215.0	62.0	146.0	0.0	.	Atlas-SNP
PAPPA2	60676	hgsc.bcm.edu	37	1	176769205	176769205	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PAPPA2-548	NM_020318	exon21	c.G5139T	p.V1713V	CATTGTGTGCACT	.	108.0	10.0	65.0	0.0	.	Atlas-SNP
ASTN1	460	hgsc.bcm.edu	37	1	176845691	176845691	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ASTN1-319	NM_004319	exon21	c.G3445T	p.D1149Y	CATCATCCACCAC	.	296.0	151.0	209.0	1.0	.	Atlas-SNP
ASTN1	460	hgsc.bcm.edu	37	1	176863813	176863813	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ASTN1-319	NM_004319	exon17	c.C2825A	p.S942Y	GGGCAGGACGAGG	.	137.0	40.0	92.0	0.0	.	Atlas-SNP
TDRD5	163589	hgsc.bcm.edu	37	1	179620086	179620086	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TDRD5-94	NM_001199085	exon12	c.G1885A	p.D629N	TATGTAGATGGAA	.	340.0	91.0	165.0	0.0	.	Atlas-SNP
CACNA1E	777	hgsc.bcm.edu	37	1	181702776	181702776	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CACNA1E-95	NM_001205293	exon21	c.C3152A	p.P1051H	GCGAGCCTGACCT	.	973.0	256.0	531.0	1.0	.	Atlas-SNP
CACNA1E	777	hgsc.bcm.edu	37	1	181767816	181767816	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CACNA1E-95	NM_001205293	exon48	c.C6788A	p.S2263Y	GCCGTTCCAACAC	.	217.0	21.0	117.0	0.0	.	Atlas-SNP
CACNA1E	777	hgsc.bcm.edu	37	1	181767817	181767817	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CACNA1E-95	NM_001205293	exon48	c.C6789A	p.S2263S	CCGTTCCAACACC	.	217.0	21.0	114.0	0.0	.	Atlas-SNP
RGSL1	353299	hgsc.bcm.edu	37	1	182499425	182499425	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RGSL1-226	NM_001137669	exon12	c.C2172A	p.S724S	CGCTTCCATGCGT	.	165.0	58.0	95.0	0.0	.	Atlas-SNP
RGSL1	353299	hgsc.bcm.edu	37	1	182499426	182499426	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RGSL1-226	NM_001137669	exon12	c.A2173T	p.M725L	GCTTCCATGCGTC	.	167.0	58.0	98.0	0.0	.	Atlas-SNP
LAMC2	3918	hgsc.bcm.edu	37	1	183195953	183195953	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LAMC2-93	NM_018891	exon9	c.G1187T	p.C396F	AGGATTGTGCTTC	.	217.0	17.0	163.0	0.0	.	Atlas-SNP
PLA2G4A	5321	hgsc.bcm.edu	37	1	186880385	186880385	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PLA2G4A-721	NM_024420	exon7	c.G422T	p.C141F	GCTCATGCCCAGA	.	186.0	63.0	116.0	0.0	.	Atlas-SNP
FAM5C	339479	hgsc.bcm.edu	37	1	190067550	190067550	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM5C-228	NM_199051	exon8	c.C1899T	p.I633I	GGACTTGATGCGA	.	155.0	88.0	130.0	0.0	.	Atlas-SNP
RGS18	64407	hgsc.bcm.edu	37	1	192127877	192127877	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RGS18-229	NM_130782	exon1	c.C110A	p.A37D	AAGAAGCCAAAAT	.	259.0	60.0	230.0	0.0	.	Atlas-SNP
RGS1	5996	hgsc.bcm.edu	37	1	192548286	192548286	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RGS1-226	NM_002922	exon5	c.C464A	p.T155N	TCCGCACTCGAGA	.	238.0	59.0	201.0	0.0	.	Atlas-SNP
CFHR3	10878	hgsc.bcm.edu	37	1	196749007	196749007	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CFHR3-90	NM_021023	exon3	c.G334C	p.V112L	ACAGAAGTTGCCT	.	618.0	301.0	414.0	0.0	.	Atlas-SNP
CFHR2	3080	hgsc.bcm.edu	37	1	196920020	196920020	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CFHR2-93	NM_005666	exon3	c.G292C	p.E98Q	CATTCTGAATCTT	.	204.0	17.0	155.0	0.0	.	Atlas-SNP
CFHR5	81494	hgsc.bcm.edu	37	1	196964954	196964954	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CFHR5-154	NM_030787	exon5	c.C715G	p.P239A	TGCAATCCTAATT	.	289.0	142.0	200.0	0.0	.	Atlas-SNP
ASPM	259266	hgsc.bcm.edu	37	1	197059995	197059995	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ASPM-615	NM_001206846	exon22	c.A4866T	p.G1622G	AATGATTCCACTA	.	62.0	23.0	45.0	0.0	.	Atlas-SNP
ASPM	259266	hgsc.bcm.edu	37	1	197113117	197113117	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ASPM-615	NM_001206846	exon2	c.A411T	p.L137L	ATTTCCTAGTAAT	.	127.0	44.0	114.0	0.0	.	Atlas-SNP
KIF21B	23046	hgsc.bcm.edu	37	1	200943940	200943940	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIF21B-96	NM_017596	exon33	c.G4677T	p.W1559C	CACGTTCCAGACC	.	379.0	94.0	186.0	0.0	.	Atlas-SNP
KIF21B	23046	hgsc.bcm.edu	37	1	200971454	200971454	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIF21B-96	NM_017596	exon9	c.G1237T	p.G413C	CAGCGCCATCCTC	.	193.0	53.0	132.0	0.0	.	Atlas-SNP
CACNA1S	779	hgsc.bcm.edu	37	1	201009798	201009798	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CACNA1S-94	NM_000069	exon42	c.G5178T	p.L1726L	CTGGGTCAGCAGT	.	140.0	46.0	74.0	0.0	.	Atlas-SNP
CACNA1S	779	hgsc.bcm.edu	37	1	201009799	201009799	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CACNA1S-94	NM_000069	exon42	c.T5177C	p.L1726P	TGGGTCAGCAGTC	.	138.0	45.0	75.0	0.0	.	Atlas-SNP
CACNA1S	779	hgsc.bcm.edu	37	1	201047167	201047167	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CACNA1S-94	NM_000069	exon11	c.G1459T	p.G487C	GCAGGCCCAGCCC	.	625.0	338.0	369.0	0.0	.	Atlas-SNP
PPFIA4	8497	hgsc.bcm.edu	37	1	203028334	203028334	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PPFIA4-230	NM_015053	exon7	c.G918T	p.M306I	CAGTATGCAGGAG	.	811.0	294.0	468.0	0.0	.	Atlas-SNP
BTG2	7832	hgsc.bcm.edu	37	1	203276418	203276418	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BTG2-651	NM_006763	exon2	c.C329T	p.S110F	AGGTGTCCTACCG	.	140.0	39.0	104.0	0.0	.	Atlas-SNP
PRELP	5549	hgsc.bcm.edu	37	1	203452762	203452762	+	Silent	SNP	C	C	T	rs200569548		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PRELP-516	NM_002725	exon2	c.C450T	p.P150P	ACTGCCCGGCCTG	.	316.0	106.0	202.0	0.0	C|0.999;T|0.000	Atlas-SNP
LAX1	54900	hgsc.bcm.edu	37	1	203743202	203743202	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LAX1-514	NM_017773	exon5	c.C590A	p.P197H	ATGTCCCCACAGC	.	196.0	66.0	99.0	0.0	.	Atlas-SNP
ZC3H11A	9877	hgsc.bcm.edu	37	1	203807096	203807096	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZC3H11A-515	NM_014827	exon13	c.G877T	p.G293C	ATAGGCGGTGACA	.	246.0	115.0	190.0	0.0	.	Atlas-SNP
NFASC	23114	hgsc.bcm.edu	37	1	204937426	204937426	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NFASC-139	NM_001160331	exon7	c.C789A	p.T263T	GGGCACCGCGAGC	.	226.0	98.0	136.0	0.0	.	Atlas-SNP
NFASC	23114	hgsc.bcm.edu	37	1	204966446	204966446	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NFASC-139	NM_001005388	exon25	c.C2931A	p.V977V	CACCGTCGCCACA	.	478.0	167.0	338.0	1.0	.	Atlas-SNP
FCAMR	83953	hgsc.bcm.edu	37	1	207139094	207139094	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FCAMR-91	NM_032029	exon4	c.G279T	p.S93S	GAGGGGCGAGGAA	.	235.0	85.0	168.0	0.0	.	Atlas-SNP
PLXNA2	5362	hgsc.bcm.edu	37	1	208202235	208202235	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PLXNA2-92	NM_025179	exon30	c.C5378G	p.S1793C	GAGGGGGAGTCCT	.	333.0	43.0	197.0	0.0	.	Atlas-SNP
LAMB3	3914	hgsc.bcm.edu	37	1	209795997	209795997	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LAMB3-156	NM_001017402	exon17	c.A2585G	p.Q862R	TGAATCTGTGAGG	.	200.0	60.0	134.0	0.0	.	Atlas-SNP
LAMB3	3914	hgsc.bcm.edu	37	1	209796407	209796407	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LAMB3-156	NM_001017402	exon16	c.G2476T	p.G826C	CCCCACCGGCCCT	.	425.0	208.0	280.0	1.0	.	Atlas-SNP
TRAF3IP3	80342	hgsc.bcm.edu	37	1	209936416	209936416	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TRAF3IP3-291	NM_025228	exon6	c.C555A	p.Y185X	CAGTTACGGAGTT	.	141.0	54.0	101.0	0.0	.	Atlas-SNP
IRF6	3664	hgsc.bcm.edu	37	1	209964145	209964145	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IRF6-92	NM_001206696	exon5	c.T470C	p.F157S	CCATAGAAGAGTC	.	161.0	46.0	88.0	0.0	.	Atlas-SNP
KCNH1	3756	hgsc.bcm.edu	37	1	210857441	210857441	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KCNH1-94	NM_002238	exon11	c.G2071C	p.E691Q	GTTCTTCCTCTTC	.	55.0	9.0	31.0	0.0	.	Atlas-SNP
KCNH1	3756	hgsc.bcm.edu	37	1	210971060	210971060	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KCNH1-94	NM_002238	exon9	c.G1624T	p.V542L	GGTGCACGCAGAT	.	400.0	207.0	233.0	0.0	.	Atlas-SNP
KCNH1	3756	hgsc.bcm.edu	37	1	211264025	211264025	+	Silent	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KCNH1-94	NM_002238	exon4	c.T318A	p.P106P	CCACACAGGTGTC	.	83.0	47.0	43.0	0.0	.	Atlas-SNP
INTS7	25896	hgsc.bcm.edu	37	1	212141280	212141280	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	INTS7-90	NM_001199809	exon14	c.A1907G	p.Y636C	TCTCCATATCGAG	.	60.0	24.0	23.0	0.0	.	Atlas-SNP
KCNK2	3776	hgsc.bcm.edu	37	1	215408289	215408289	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KCNK2-90	NM_001017424	exon7	c.T1070A	p.I357N	CCTCCATCAAGCG	.	112.0	50.0	91.0	0.0	.	Atlas-SNP
USH2A	7399	hgsc.bcm.edu	37	1	215822060	215822060	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	USH2A-115	NM_206933	exon66	c.T14392C	p.F4798L	TAGTGAAGGCTTG	.	249.0	128.0	141.0	0.0	.	Atlas-SNP
USH2A	7399	hgsc.bcm.edu	37	1	215953376	215953376	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	USH2A-115	NM_206933	exon55	c.C10748A	p.A3583E	GTAGCTGCAACTA	.	168.0	22.0	121.0	0.0	.	Atlas-SNP
USH2A	7399	hgsc.bcm.edu	37	1	215963428	215963428	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	USH2A-115	NM_206933	exon51	c.C10155A	p.D3385E	AATCTTGTCAGAG	.	85.0	20.0	60.0	0.0	.	Atlas-SNP
USH2A	7399	hgsc.bcm.edu	37	1	216052284	216052284	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	USH2A-115	NM_206933	exon42	c.G8380T	p.V2794F	AAGCAACAATGGT	.	329.0	166.0	209.0	0.0	.	Atlas-SNP
USH2A	7399	hgsc.bcm.edu	37	1	216498841	216498841	+	Silent	SNP	G	G	T	rs111033272		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	USH2A-115	NM_206933	exon6	c.C949A	p.R317R	AGTACCGCTGTGC	.	175.0	76.0	113.0	0.0	.	Atlas-SNP
TGFB2	7042	hgsc.bcm.edu	37	1	218607682	218607682	+	Silent	SNP	A	A	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TGFB2-710	NM_003238	exon4	c.A646C	p.R216R	CCAGACAGGAACC	.	161.0	22.0	98.0	0.0	.	Atlas-SNP
EPRS	2058	hgsc.bcm.edu	37	1	220152840	220152840	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EPRS-92	NM_004446	exon27	c.A3829C	p.T1277P	TTCGAGTTGTCAG	.	192.0	108.0	105.0	0.0	.	Atlas-SNP
EPRS	2058	hgsc.bcm.edu	37	1	220178699	220178699	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EPRS-92	NM_004446	exon16	c.G1954T	p.E652X	GCTCTTCATGCTG	.	49.0	20.0	21.0	0.0	.	Atlas-SNP
BPNT1	10380	hgsc.bcm.edu	37	1	220247364	220247364	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BPNT1-91	NM_006085	exon3	c.G170A	p.S57N	CATATGCTCATCT	.	159.0	34.0	95.0	0.0	.	Atlas-SNP
HHIPL2	79802	hgsc.bcm.edu	37	1	222705308	222705308	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HHIPL2-69	NM_024746	exon6	c.G1723A	p.G575R	TGTTACCTGCTTC	.	145.0	49.0	77.0	0.0	.	Atlas-SNP
DNAH14	127602	hgsc.bcm.edu	37	1	225267153	225267153	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DNAH14-23	NM_001373	exon18	c.G2669T	p.S890I	AGTTAAGTAAAAT	.	256.0	38.0	220.0	0.0	.	Atlas-SNP
CDC42BPA	8476	hgsc.bcm.edu	37	1	227261686	227261686	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CDC42BPA-549	NM_014826	exon18	c.G2371C	p.A791P	GTTTCGCAAAACG	.	56.0	17.0	48.0	0.0	.	Atlas-SNP
PRSS38	339501	hgsc.bcm.edu	37	1	228005027	228005027	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PRSS38-92	NM_183062	exon3	c.G429C	p.M143I	TGAGATGTACCAC	.	221.0	53.0	129.0	0.0	.	Atlas-SNP
OBSCN	84033	hgsc.bcm.edu	37	1	228469788	228469788	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OBSCN-403	NM_001271223	exon36	c.G9639T	p.Q3213H	CTTCCAGGCCACA	.	543.0	322.0	368.0	2.0	.	Atlas-SNP
PGBD5	79605	hgsc.bcm.edu	37	1	230468646	230468646	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PGBD5-93	NM_001258311	exon5	c.G1217A	p.W406X	TTGTACCAGCAGA	.	358.0	177.0	180.0	0.0	.	Atlas-SNP
TRIM67	440730	hgsc.bcm.edu	37	1	231349591	231349591	+	Silent	SNP	C	C	A	rs200465476	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TRIM67-229	NM_001004342	exon9	c.C2154A	p.T718T	GGCCACCGTGGGC	.	666.0	345.0	383.0	0.0	C|0.998;T|0.002	Atlas-SNP
DISC1	27185	hgsc.bcm.edu	37	1	231885794	231885794	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DISC1-91	NM_001164539	exon4	c.G1240C	p.A414P	GTCCAGGCTGCCT	.	276.0	74.0	158.0	0.0	.	Atlas-SNP
ARID4B	51742	hgsc.bcm.edu	37	1	235357437	235357437	+	Silent	SNP	T	T	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ARID4B-228	NM_001206794	exon19	c.A2016C	p.T672T	TGGATTTGTCTGA	.	107.0	54.0	69.0	0.0	.	Atlas-SNP
LYST	1130	hgsc.bcm.edu	37	1	235904873	235904873	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LYST-143	NM_000081	exon31	c.G8207C	p.C2736S	TCCTTACAAGACC	.	189.0	42.0	128.0	0.0	.	Atlas-SNP
LYST	1130	hgsc.bcm.edu	37	1	235966313	235966313	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LYST-143	NM_000081	exon8	c.G3607C	p.E1203Q	CAGCTTCTTCTGA	.	69.0	8.0	45.0	0.0	.	Atlas-SNP
LYST	1130	hgsc.bcm.edu	37	1	235972428	235972428	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LYST-143	NM_000081	exon5	c.G1690T	p.A564S	AGGAAGCCTGCTG	.	238.0	124.0	135.0	0.0	.	Atlas-SNP
LYST	1130	hgsc.bcm.edu	37	1	235973763	235973763	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LYST-143	NM_000081	exon5	c.C355G	p.Q119E	TTTCCTGAGTGGA	.	49.0	15.0	32.0	0.0	.	Atlas-SNP
ACTN2	88	hgsc.bcm.edu	37	1	236902815	236902815	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ACTN2-95	NM_001103	exon10	c.G1090C	p.E364Q	CCCTCCGAGGGCA	.	193.0	54.0	128.0	0.0	.	Atlas-SNP
RYR2	6262	hgsc.bcm.edu	37	1	237664056	237664056	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RYR2-158	NM_001035	exon21	c.G2249T	p.R750I	TGTTAAGAACTGA	.	237.0	59.0	161.0	0.0	.	Atlas-SNP
RYR2	6262	hgsc.bcm.edu	37	1	237811775	237811775	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RYR2-158	NM_001035	exon49	c.G7374T	p.A2458A	GTCTGCGGGGTTT	.	269.0	33.0	179.0	0.0	.	Atlas-SNP
RYR2	6262	hgsc.bcm.edu	37	1	237870480	237870480	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RYR2-158	NM_001035	exon68	c.A9812T	p.E3271V	ACTCAGAGCACAT	.	271.0	72.0	173.0	0.0	.	Atlas-SNP
RYR2	6262	hgsc.bcm.edu	37	1	237890397	237890397	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RYR2-158	NM_001035	exon76	c.C10736G	p.P3579R	AACATCCTCAGAG	.	119.0	51.0	74.0	0.0	.	Atlas-SNP
RYR2	6262	hgsc.bcm.edu	37	1	237954769	237954769	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RYR2-158	NM_001035	exon93	c.C13517A	p.A4506D	TGTTAGCCTTATT	.	139.0	38.0	99.0	0.0	.	Atlas-SNP
RYR2	6262	hgsc.bcm.edu	37	1	237954770	237954770	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RYR2-158	NM_001035	exon93	c.C13518A	p.A4506A	GTTAGCCTTATTT	.	137.0	39.0	98.0	0.0	.	Atlas-SNP
ZP4	57829	hgsc.bcm.edu	37	1	238048794	238048794	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZP4-93	NM_021186	exon8	c.C1057G	p.L353V	TGTGAAGGATGGA	.	387.0	57.0	262.0	0.0	.	Atlas-SNP
ZP4	57829	hgsc.bcm.edu	37	1	238049161	238049161	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZP4-93	NM_021186	exon7	c.G865T	p.V289L	TACTTACTGAGTA	.	182.0	29.0	134.0	0.0	.	Atlas-SNP
FMN2	56776	hgsc.bcm.edu	37	1	240371788	240371788	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FMN2-145	NM_020066	exon5	c.C3676A	p.P1226T	CCACTCCCTCCAC	.	214.0	71.0	142.0	0.0	.	Atlas-SNP
WDR64	128025	hgsc.bcm.edu	37	1	241846794	241846794	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	WDR64-91	NM_144625	exon6	c.T600C	p.N200N	GGAAAATTATTTT	.	98.0	21.0	82.0	0.0	.	Atlas-SNP
CEP170	9859	hgsc.bcm.edu	37	1	243349332	243349332	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CEP170-93	NM_014812	exon10	c.G1315T	p.G439W	ATTTCCCATGTGG	.	305.0	116.0	218.0	0.0	.	Atlas-SNP
KIF26B	55083	hgsc.bcm.edu	37	1	245766029	245766029	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIF26B-25	NM_018012	exon6	c.C1501G	p.Q501E	GGCAACCAGGTTC	.	315.0	29.0	164.0	0.0	.	Atlas-SNP
KIF26B	55083	hgsc.bcm.edu	37	1	245849362	245849362	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIF26B-25	NM_018012	exon12	c.C3077A	p.P1026Q	GCGTCCCGGGCAG	.	181.0	77.0	12.0	0.0	.	Atlas-SNP
OR2C3	81472	hgsc.bcm.edu	37	1	247694914	247694914	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR2C3-70	NM_198074	exon2	c.C900G	p.S300R	GAGGGCGCTCTTC	.	274.0	83.0	121.0	0.0	.	Atlas-SNP
OR11L1	391189	hgsc.bcm.edu	37	1	248004443	248004443	+	Nonsense_Mutation	SNP	G	G	T	rs201677584	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR11L1-71	NM_001001959	exon1	c.C756A	p.Y252X	GGTCCCGTAGTAG	.	332.0	132.0	188.0	0.0	G|0.999;A|0.000	Atlas-SNP
TRIM58	25893	hgsc.bcm.edu	37	1	248039228	248039228	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TRIM58-96	NM_015431	exon6	c.G898T	p.A300S	GCCACGGCGCACC	.	127.0	12.0	59.0	0.0	.	Atlas-SNP
OR2L8	391190	hgsc.bcm.edu	37	1	248113085	248113085	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR2L8-70	NM_001001963	exon1	c.C926A	p.S309Y	TCTGCTCTGTGAA	.	41.0	24.0	29.0	0.0	.	Atlas-SNP
OR2L5	81466	hgsc.bcm.edu	37	1	248185406	248185406	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001258284	exon1	c.C157G	p.H53D	GACACCCATCTCC	.	251.0	84.0	180.0	0.0	.	Atlas-SNP
OR2L2	26246	hgsc.bcm.edu	37	1	248201688	248201688	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR2L2-70	NM_001004686	exon1	c.G119T	p.G40V	TAATTGGAAATCT	.	259.0	34.0	187.0	0.0	.	Atlas-SNP
OR2L13	284521	hgsc.bcm.edu	37	1	248263017	248263017	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR2L13-70	NM_175911	exon3	c.C340A	p.L114M	TTACTCCTGACCT	.	174.0	29.0	90.0	0.0	.	Atlas-SNP
OR2L13	284521	hgsc.bcm.edu	37	1	248263394	248263394	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR2L13-70	NM_175911	exon3	c.C717G	p.T239T	CACCACCATTTCA	.	157.0	38.0	95.0	0.0	.	Atlas-SNP
OR2M5	127059	hgsc.bcm.edu	37	1	248308676	248308676	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR2M5-71	NM_001004690	exon1	c.C227A	p.S76Y	TCTGCTCTACCGT	.	463.0	57.0	285.0	0.0	.	Atlas-SNP
OR2M4	26245	hgsc.bcm.edu	37	1	248402254	248402254	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR2M4-113	NM_017504	exon1	c.C24T	p.F8F	GACCTTCAACTCC	.	305.0	153.0	167.0	0.0	.	Atlas-SNP
OR2T12	127064	hgsc.bcm.edu	37	1	248458292	248458292	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR2T12-71	NM_001004692	exon1	c.A589T	p.M197L	TGTACATGGCGTT	.	1588.0	190.0	807.0	0.0	.	Atlas-SNP
OR14C36	127066	hgsc.bcm.edu	37	1	248512583	248512583	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR14C36-48	NM_001001918	exon1	c.C507A	p.S169S	TCGGTCCAACGTT	.	119.0	57.0	85.0	0.0	.	Atlas-SNP
OR2T6	254879	hgsc.bcm.edu	37	1	248551108	248551108	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR2T6-71	NM_001005471	exon1	c.T199A	p.S67T	CACCTCTCCGTCA	.	345.0	186.0	219.0	0.0	.	Atlas-SNP
OR2T1	26696	hgsc.bcm.edu	37	1	248569879	248569879	+	Missense_Mutation	SNP	T	T	C	rs138350213	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR2T1-69	NM_030904	exon1	c.T584C	p.I195T	TGATTATAGCAGG	.	248.0	107.0	139.0	0.0	T|0.999;C|0.001	Atlas-SNP
OR2T10	127069	hgsc.bcm.edu	37	1	248756309	248756309	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR2T10-69	NM_001004693	exon1	c.C761T	p.A254V	ATAGCAGCTCCAT	.	256.0	39.0	202.0	0.0	.	Atlas-SNP
OR2T10	127069	hgsc.bcm.edu	37	1	248756494	248756494	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR2T10-69	NM_001004693	exon1	c.C576A	p.T192T	AAGTGAGGTGTCT	.	392.0	246.0	343.0	1.0	.	Atlas-SNP
OR2T10	127069	hgsc.bcm.edu	37	1	248756527	248756527	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR2T10-69	NM_001004693	exon1	c.C543A	p.V181V	AGCAGGGACCTCA	.	441.0	74.0	375.0	0.0	.	Atlas-SNP
OR2T10	127069	hgsc.bcm.edu	37	1	248756878	248756878	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR2T10-69	NM_001004693	exon1	c.C192A	p.N64K	GAGCTGGTTTATA	.	281.0	153.0	266.0	1.0	.	Atlas-SNP
OR2T11	127077	hgsc.bcm.edu	37	1	248790331	248790331	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR2T11-69	NM_001001964	exon1	c.G99T	p.L33F	GGCCCCCAAGAAA	.	196.0	27.0	135.0	0.0	.	Atlas-SNP
CCDC27	148870	hgsc.bcm.edu	37	1	3669101	3669101	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CCDC27-91	NM_152492	exon1	c.55delC	p.R19fs	.	.	176.0	88.0	100.0	0.0	.	Atlas-Indel
MPL	4352	hgsc.bcm.edu	37	1	43818247	43818248	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MPL-9885	NM_005373	exon12	c.1712_1713insC	p.L571fs	.	.	215.0	47.0	176.0	0.0	.	Atlas-Indel
BRDT	676	hgsc.bcm.edu	37	1	92447227	92447228	+	In_Frame_Ins	INS	-	-	AGC	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BRDT-374	NM_001726	exon12	c.1917_1918insAGC	p.E639delinsES	.	.	359.0	133.0	281.0	0.0	.	Atlas-Indel
AMIGO1	57463	hgsc.bcm.edu	37	1	110050171	110050171	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	AMIGO1-136	NM_020703	exon2	c.1365delC	p.G455fs	.	.	170.0	38.0	156.0	0.0	.	Atlas-Indel
FCER1A	2205	hgsc.bcm.edu	37	1	159273889	159273889	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FCER1A-524	NM_002001	exon4	c.247delG	p.A83fs	.	.	206.0	102.0	175.0	0.0	.	Atlas-Indel
SLAMF9	89886	hgsc.bcm.edu	37	1	159922196	159922196	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLAMF9-91	NM_033438	exon3	c.521delA	p.D174fs	.	.	203.0	46.0	106.0	0.0	.	Atlas-Indel
RGSL1	353299	hgsc.bcm.edu	37	1	182500036	182500036	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RGSL1-226	NM_001137669	exon13	c.2354delA	p.Q785fs	.	.	96.0	45.0	52.0	0.0	.	Atlas-Indel
FAM5C	339479	hgsc.bcm.edu	37	1	190067548	190067548	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM5C-228	NM_199051	exon8	c.1902delG	p.K634fs	.	.	158.0	87.0	131.0	0.0	.	Atlas-Indel
OR2L13	284521	hgsc.bcm.edu	37	1	248263390	248263390	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR2L13-70	NM_175911	exon3	c.712delA	p.T238fs	.	.	154.0	83.0	97.0	0.0	.	Atlas-Indel
RGSL1	353299	hgsc.bcm.edu	37	1	182500036	182500037	+	Frame_Shift_Del	DEL	GG	GG	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RGSL1-226	NM_001137669	exon13	c.2354_2355del	p.785_785del	.	.	96.0	29.0	52.0	0.0	.	Pindel
FAM5C	339479	hgsc.bcm.edu	37	1	190067549	190067550	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM5C-228	NM_199051	exon8	c.1900_1901del	p.634_634del	.	.	157.0	58.0	130.0	0.0	.	Pindel
SIRPG	55423	hgsc.bcm.edu	37	20	1610940	1610940	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SIRPG-23	NM_001039508	exon4	c.C761G	p.S254C	GTAAGGGATGATG	.	40.0	12.0	78.0	0.0	.	Atlas-SNP
TGM6	343641	hgsc.bcm.edu	37	20	2398147	2398147	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TGM6-94	NM_001254734	exon10	c.A1606G	p.I536V	GCCACCATCCTCT	.	40.0	11.0	26.0	0.0	.	Atlas-SNP
TMC2	117532	hgsc.bcm.edu	37	20	2542507	2542507	+	Silent	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TMC2-93	NM_080751	exon4	c.A405T	p.S135S	CAGGTCATCCTCC	.	120.0	26.0	166.0	0.0	.	Atlas-SNP
SLC4A11	83959	hgsc.bcm.edu	37	20	3218585	3218585	+	Silent	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC4A11-91	NM_001174090	exon1	c.T126A	p.A42A	CGCTGCAGCGAGA	.	54.0	17.0	88.0	0.0	.	Atlas-SNP
ATRN	8455	hgsc.bcm.edu	37	20	3624815	3624815	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ATRN-154	NM_139321	exon28	c.C4065T	p.P1355P	CAAACCCATTGCA	.	78.0	25.0	127.0	0.0	.	Atlas-SNP
PROKR2	128674	hgsc.bcm.edu	37	20	5283022	5283022	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PROKR2-94	NM_144773	exon2	c.G819T	p.T273T	CAGGACCGTCTTC	.	132.0	42.0	167.0	0.0	.	Atlas-SNP
CHGB	1114	hgsc.bcm.edu	37	20	5903995	5903995	+	Missense_Mutation	SNP	G	G	T	rs200027232	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CHGB-96	NM_001819	exon4	c.G1205T	p.G402V	GATATGGTGAAGA	.	21.0	5.0	51.0	0.0	G|0.999;A|0.001	Atlas-SNP
CHGB	1114	hgsc.bcm.edu	37	20	5904314	5904314	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CHGB-96	NM_001819	exon4	c.C1524A	p.S508S	TAGCTCCCATCAC	.	90.0	14.0	124.0	0.0	.	Atlas-SNP
CHGB	1114	hgsc.bcm.edu	37	20	5904315	5904315	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CHGB-96	NM_001819	exon4	c.C1525A	p.H509N	AGCTCCCATCACA	.	90.0	13.0	126.0	0.0	.	Atlas-SNP
HAO1	54363	hgsc.bcm.edu	37	20	7875859	7875859	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HAO1-93	NM_017545	exon5	c.G734T	p.R245M	GCCTCCCTGGCAT	.	68.0	17.0	88.0	0.0	.	Atlas-SNP
PLCB1	23236	hgsc.bcm.edu	37	20	8770166	8770166	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PLCB1-297	NM_182734	exon30	c.C3280T	p.P1094S	TTTAGGGAGAAGA	.	91.0	35.0	155.0	0.0	.	Atlas-SNP
PLCB4	5332	hgsc.bcm.edu	37	20	9417684	9417684	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PLCB4-274	NM_000933	exon26	c.A2613G	p.K871K	TTCCAAAAATGAC	.	85.0	24.0	133.0	0.0	.	Atlas-SNP
LAMP5	24141	hgsc.bcm.edu	37	20	9510300	9510300	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001199897	exon5	c.C544A	p.P182T	AAATGCCCAGTGG	.	72.0	9.0	113.0	0.0	.	Atlas-SNP
LAMP5	24141	hgsc.bcm.edu	37	20	9510301	9510301	+	Missense_Mutation	SNP	C	C	A	rs111239272	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001199897	exon5	c.C545A	p.P182Q	AATGCCCAGTGGA	.	74.0	9.0	113.0	0.0	C|0.500;T|0.500	Atlas-SNP
ESF1	51575	hgsc.bcm.edu	37	20	13752040	13752040	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ESF1-91	NM_001276380	exon6	c.G1340A	p.S447N	ATTTTACTAGCTG	.	71.0	14.0	90.0	0.0	.	Atlas-SNP
RRBP1	6238	hgsc.bcm.edu	37	20	17617312	17617312	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RRBP1-92	NM_001042576	exon7	c.G948T	p.V316V	CCGGGCCACCAGC	.	81.0	20.0	89.0	0.0	.	Atlas-SNP
DZANK1	55184	hgsc.bcm.edu	37	20	18434400	18434400	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001099407	exon5	c.G450T	p.W150C	AACATTCCAGCTG	.	48.0	11.0	73.0	0.0	.	Atlas-SNP
C20orf78	100128496	hgsc.bcm.edu	37	20	18790706	18790706	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	C20orf78-71	NM_001242671	exon3	c.A170T	p.E57V	CTGTCTTCTGAGG	.	103.0	31.0	164.0	0.0	.	Atlas-SNP
RALGAPA2	57186	hgsc.bcm.edu	37	20	20501596	20501596	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RALGAPA2-24	NM_020343	exon31	c.C4049T	p.S1350L	TCTGCTGATGAAT	.	95.0	24.0	130.0	0.0	.	Atlas-SNP
FOXA2	3170	hgsc.bcm.edu	37	20	22563160	22563160	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FOXA2-228	NM_021784	exon2	c.C720T	p.T240T	GTGCAGGGTCCAG	.	88.0	48.0	101.0	0.0	.	Atlas-SNP
CD93	22918	hgsc.bcm.edu	37	20	23065618	23065618	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CD93-153	NM_012072	exon1	c.T1212C	p.D404D	TGAGCCATCTGTG	.	224.0	101.0	237.0	0.0	.	Atlas-SNP
CST8	10047	hgsc.bcm.edu	37	20	23472361	23472361	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CST8-90	NM_005492	exon2	c.G57T	p.V19V	CCTGGTGGCCAGG	.	163.0	43.0	129.0	0.0	.	Atlas-SNP
CST9	128822	hgsc.bcm.edu	37	20	23584212	23584212	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CST9-91	NM_001008693	exon2	c.T415C	p.C139R	CCATGCAGCATCC	.	216.0	45.0	232.0	0.0	.	Atlas-SNP
BPIFB6	128859	hgsc.bcm.edu	37	20	31631832	31631832	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_174897	exon15	c.G1341T	p.M447I	CCTGATGCTGGAC	.	88.0	17.0	88.0	0.0	.	Atlas-SNP
CDK5RAP1	51654	hgsc.bcm.edu	37	20	31967333	31967333	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CDK5RAP1-230	NM_016082	exon8	c.C771G	p.V257V	TCTGGAGACCTGA	.	131.0	17.0	143.0	0.0	.	Atlas-SNP
PIGU	128869	hgsc.bcm.edu	37	20	33169461	33169461	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PIGU-226	NM_080476	exon10	c.C942A	p.F314L	CATGAAGAAGATG	.	134.0	9.0	133.0	0.0	.	Atlas-SNP
ACSS2	55902	hgsc.bcm.edu	37	20	33508448	33508448	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ACSS2-226	NM_018677	exon9	c.G1079T	p.G360V	ACATTGGTTGGAT	.	105.0	42.0	124.0	0.0	.	Atlas-SNP
CEP250	11190	hgsc.bcm.edu	37	20	34090551	34090551	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CEP250-27	NM_007186	exon30	c.G4354T	p.E1452X	CAACGGGAAATGC	.	149.0	77.0	194.0	0.0	.	Atlas-SNP
RBM12	10137	hgsc.bcm.edu	37	20	34242103	34242103	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RBM12-93	NM_152838	exon3	c.A1142T	p.Q381L	ACCCACTGTCTTT	.	90.0	17.0	101.0	0.0	.	Atlas-SNP
PHF20	51230	hgsc.bcm.edu	37	20	34535448	34535448	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PHF20-515	NM_016436	exon18	c.C2938T	p.P980S	GAGCCCCCTGAGC	.	112.0	50.0	90.0	0.0	.	Atlas-SNP
MAFB	9935	hgsc.bcm.edu	37	20	39316536	39316536	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MAFB-846	NM_005461	exon1	c.C955G	p.P319A	ACTCGGGAGAGGA	.	59.0	21.0	59.0	0.0	.	Atlas-SNP
L3MBTL1	26013	hgsc.bcm.edu	37	20	42143400	42143400	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	L3MBTL1-227	NM_032107	exon4	c.G420T	p.A140A	CGAGGCGGGCCCC	.	102.0	60.0	6.0	0.0	.	Atlas-SNP
MYBL2	4605	hgsc.bcm.edu	37	20	42315672	42315672	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYBL2-415	NM_002466	exon5	c.G460C	p.G154R	GTGCTGGGCAACC	.	118.0	57.0	87.0	0.0	.	Atlas-SNP
TOX2	84969	hgsc.bcm.edu	37	20	42683068	42683068	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TOX2-91	NM_032883	exon6	c.C655T	p.Q219X	GACACTCAGGCCG	.	174.0	75.0	170.0	0.0	.	Atlas-SNP
RIMS4	140730	hgsc.bcm.edu	37	20	43384921	43384921	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	RIMS4,NS,carcinoma,0	RIMS4-94	NM_001205317	exon6	c.G667C	p.E223Q	CCAGCTCCTCCAG	.	139.0	64.0	147.0	0.0	.	Atlas-SNP
SLC2A10	81031	hgsc.bcm.edu	37	20	45354555	45354555	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC2A10-91	NM_030777	exon2	c.G880T	p.A294S	GACCGTGCAGGCC	.	167.0	39.0	149.0	0.0	.	Atlas-SNP
EYA2	2139	hgsc.bcm.edu	37	20	45771748	45771748	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EYA2-523	NM_172110	exon10	c.C939A	p.F313L	GATCTTCAACCTT	.	137.0	65.0	151.0	0.0	.	Atlas-SNP
ZMYND8	23613	hgsc.bcm.edu	37	20	45976616	45976616	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZMYND8-252	NM_012408	exon2	c.C69G	p.I23M	AGTAGAGATATCC	.	54.0	15.0	53.0	0.0	.	Atlas-SNP
SULF2	55959	hgsc.bcm.edu	37	20	46311853	46311853	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SULF2-293	NM_198596	exon7	c.G949T	p.D317Y	CGTGGTCGGCGGT	.	279.0	55.0	212.0	0.0	.	Atlas-SNP
SULF2	55959	hgsc.bcm.edu	37	20	46385940	46385940	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SULF2-293	NM_198596	exon2	c.G168T	p.V56V	CAGCTCCACATCC	.	73.0	31.0	62.0	0.0	.	Atlas-SNP
PREX1	57580	hgsc.bcm.edu	37	20	47317415	47317415	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PREX1-231	NM_020820	exon7	c.C793A	p.L265I	CTGTGAGGTTGGA	.	127.0	63.0	102.0	0.0	.	Atlas-SNP
B4GALT5	9334	hgsc.bcm.edu	37	20	48257052	48257052	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	B4GALT5-91	NM_004776	exon6	c.A757T	p.R253W	AATGCCTCGGCAT	.	55.0	27.0	50.0	0.0	.	Atlas-SNP
SALL4	57167	hgsc.bcm.edu	37	20	50408431	50408431	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SALL4-92	NM_020436	exon2	c.C591A	p.S197R	ATCCGCGCTCCGC	.	88.0	15.0	88.0	0.0	.	Atlas-SNP
PCK1	5105	hgsc.bcm.edu	37	20	56139391	56139391	+	Silent	SNP	G	G	T	rs200264001	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCK1-227	NM_002591	exon7	c.G1128T	p.P376P	TGAGCCGCTAGCT	.	268.0	54.0	277.0	0.0	G|0.999;A|0.000	Atlas-SNP
ZNF831	128611	hgsc.bcm.edu	37	20	57768917	57768917	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF831-126	NM_178457	exon1	c.C2843A	p.A948E	CTCAGGCAGAGAC	.	68.0	34.0	74.0	0.0	.	Atlas-SNP
ZNF831	128611	hgsc.bcm.edu	37	20	57769069	57769069	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF831-126	NM_178457	exon1	c.G2995T	p.G999C	TCCCCAGGTGAGG	.	34.0	13.0	32.0	0.0	.	Atlas-SNP
ZNF831	128611	hgsc.bcm.edu	37	20	57769218	57769218	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF831-126	NM_178457	exon1	c.C3144A	p.P1048P	GGCTCCCAGGGAG	.	93.0	20.0	66.0	0.0	.	Atlas-SNP
ZNF831	128611	hgsc.bcm.edu	37	20	57829495	57829495	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF831-126	NM_178457	exon5	c.T4731A	p.A1577A	TTCAGCTAGTTCA	.	211.0	86.0	229.0	0.0	.	Atlas-SNP
PHACTR3	116154	hgsc.bcm.edu	37	20	58349336	58349336	+	Missense_Mutation	SNP	G	G	T	rs143127476	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PHACTR3-93	NM_080672	exon7	c.G965T	p.R322L	AGAAGCGGCTGGA	.	117.0	27.0	124.0	0.0	G|0.999;A|0.000	Atlas-SNP
TAF4	6874	hgsc.bcm.edu	37	20	60581714	60581714	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TAF4-93	NM_003185	exon7	c.C2075T	p.A692V	GTGAGCGCAGTGG	.	175.0	42.0	19.0	0.0	.	Atlas-SNP
LAMA5	3911	hgsc.bcm.edu	37	20	60913072	60913072	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LAMA5-93	NM_005560	exon14	c.G1891T	p.A631S	GCTCACCTTGGCA	.	236.0	119.0	116.0	0.0	.	Atlas-SNP
OGFR	11054	hgsc.bcm.edu	37	20	61444261	61444261	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OGFR-68	NM_007346	exon7	c.G1294T	p.G432C	GAAGTGGGCGGTC	.	123.0	32.0	56.0	0.0	.	Atlas-SNP
DIDO1	11083	hgsc.bcm.edu	37	20	61512594	61512594	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DIDO1-96	NM_001193369	exon16	c.G4714T	p.E1572X	CCCCCTCACCGGT	.	42.0	9.0	18.0	0.0	.	Atlas-SNP
YTHDF1	54915	hgsc.bcm.edu	37	20	61834292	61834292	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	YTHDF1-92	NM_017798	exon4	c.A1000G	p.R334G	CGTTTCTGTTGCG	.	72.0	21.0	62.0	0.0	.	Atlas-SNP
BIRC7	79444	hgsc.bcm.edu	37	20	61869820	61869820	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BIRC7-659	NM_139317	exon3	c.G522T	p.L174L	GCTGCTGGGCTCC	.	88.0	42.0	72.0	0.0	.	Atlas-SNP
ARFGAP1	55738	hgsc.bcm.edu	37	20	61919061	61919061	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ARFGAP1-91	NM_175609	exon14	c.G1081A	p.D361N	TGCGCGGACACCT	.	167.0	39.0	125.0	0.0	.	Atlas-SNP
GNAS	2778	hgsc.bcm.edu	37	20	57428374	57428374	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GNAS-4767	NM_080425	exon1	c.53delT	p.I18fs	.	.	111.0	51.0	146.0	0.0	.	Atlas-Indel
TPTE	7179	hgsc.bcm.edu	37	21	10920084	10920084	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TPTE-344	NM_199259	exon18	c.G1116T	p.Q372H	ACTTACCTGAGAA	.	19.0	7.0	36.0	0.0	.	Atlas-SNP
TPTE	7179	hgsc.bcm.edu	37	21	10944670	10944670	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TPTE-344	NM_199259	exon10	c.C510A	p.P170P	ATACCTGGGAATA	.	304.0	29.0	359.0	0.0	.	Atlas-SNP
BAGE3	85318	hgsc.bcm.edu	37	21	11058188	11058188	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_182481	exon3	c.G252T	p.Q84H	TGTGTTCTGGACA	.	220.0	22.0	249.0	0.0	.	Atlas-SNP
TMPRSS15	5651	hgsc.bcm.edu	37	21	19666953	19666953	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TMPRSS15-160	NM_002772	exon20	c.G2278T	p.D760Y	AGGAATCCTGTAA	.	227.0	141.0	277.0	1.0	.	Atlas-SNP
TMPRSS15	5651	hgsc.bcm.edu	37	21	19666954	19666954	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TMPRSS15-160	NM_002772	exon20	c.G2277A	p.Q759Q	GGAATCCTGTAAA	.	229.0	142.0	277.0	1.0	.	Atlas-SNP
GRIK1	2897	hgsc.bcm.edu	37	21	31311813	31311813	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GRIK1-137	NM_175611	exon1	c.G6C	p.E2D	GCCGTGCTCCATC	.	99.0	69.0	79.0	0.0	.	Atlas-SNP
KRTAP13-3	337960	hgsc.bcm.edu	37	21	31797786	31797786	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KRTAP13-3-92	NM_181622	exon1	c.C445G	p.P149A	AGATTGGATGGCA	.	111.0	83.0	116.0	0.0	.	Atlas-SNP
KRTAP15-1	254950	hgsc.bcm.edu	37	21	31812927	31812927	+	Silent	SNP	C	C	A	rs145683493	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KRTAP15-1-90	NM_181623	exon1	c.C282A	p.S94S	AAGATCCCTTGGA	.	119.0	89.0	107.0	0.0	C|1.000;T|0.000	Atlas-SNP
KRTAP15-1	254950	hgsc.bcm.edu	37	21	31812928	31812928	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KRTAP15-1-90	NM_181623	exon1	c.C283A	p.L95I	AGATCCCTTGGAT	.	121.0	90.0	109.0	0.0	.	Atlas-SNP
DSCR6	53820	hgsc.bcm.edu	37	21	38385914	38385914	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DSCR6-153	NM_018962	exon3	c.G235T	p.V79L	CATCCTGTAAGGT	.	109.0	81.0	85.0	0.0	.	Atlas-SNP
DSCAM	1826	hgsc.bcm.edu	37	21	41719682	41719682	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DSCAM-101	NM_001389	exon6	c.G1125T	p.M375I	TTTGACCATGTGA	.	152.0	115.0	158.0	0.0	.	Atlas-SNP
TRPM2	7226	hgsc.bcm.edu	37	21	45795727	45795727	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TRPM2-92	NM_003307	exon6	c.C783T	p.P261P	CTTCCCCGCCGAG	.	161.0	120.0	133.0	0.0	.	Atlas-SNP
TRPM2	7226	hgsc.bcm.edu	37	21	45845667	45845667	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TRPM2-92	NM_003307	exon25	c.C3752A	p.P1251H	ACTGCCCTGTCAC	.	259.0	171.0	108.0	0.0	.	Atlas-SNP
KRTAP10-9	386676	hgsc.bcm.edu	37	21	46047799	46047799	+	Silent	SNP	T	T	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_198690	exon1	c.T711G	p.P237P	CCGCCCTGTGTGC	.	189.0	144.0	97.0	0.0	.	Atlas-SNP
COL6A1	1291	hgsc.bcm.edu	37	21	47423043	47423043	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	COL6A1-91	NM_001848	exon34	c.G2444T	p.C815F	AGAAGTGTCCAGA	.	184.0	125.0	121.0	0.0	.	Atlas-SNP
PRAME	23532	hgsc.bcm.edu	37	22	22890729	22890729	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PRAME-515	NM_206955	exon6	c.C1290A	p.L430L	CCCGATGAGGTGC	.	70.0	40.0	50.0	0.0	.	Atlas-SNP
TTC28	23331	hgsc.bcm.edu	37	22	28559432	28559432	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001145418	exon6	c.G1089A	p.V363V	AATATACACAGCT	.	125.0	74.0	128.0	0.0	.	Atlas-SNP
AP1B1	162	hgsc.bcm.edu	37	22	29745300	29745300	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	AP1B1-92	NM_001166019	exon11	c.G1344T	p.M448I	CCAGATCATGGCA	.	73.0	47.0	103.0	0.0	.	Atlas-SNP
LARGE	9215	hgsc.bcm.edu	37	22	33712075	33712075	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LARGE-92	NM_133642	exon11	c.G1447T	p.D483Y	ACCTGTCCATGGA	.	187.0	127.0	186.0	1.0	.	Atlas-SNP
TMPRSS6	164656	hgsc.bcm.edu	37	22	37465237	37465237	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TMPRSS6-292	NM_153609	exon16	c.G2016A	p.L672L	GAGCTGCAGCAGC	.	139.0	78.0	57.0	0.0	.	Atlas-SNP
SH3BP1	23616	hgsc.bcm.edu	37	22	38043305	38043305	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SH3BP1-90	NM_018957	exon12	c.A1068G	p.P356P	GCTGCCAGAGCCT	.	98.0	41.0	100.0	0.0	.	Atlas-SNP
FAM83F	113828	hgsc.bcm.edu	37	22	40417793	40417793	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM83F-153	NM_138435	exon4	c.G1279A	p.A427T	GGAGAAGCGGCCC	.	154.0	37.0	88.0	0.0	.	Atlas-SNP
C22orf46	79640	hgsc.bcm.edu	37	22	42089695	42089695	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001142964	exon2	c.C445T	p.P149S	TCTGAGCCCATCT	.	68.0	14.0	69.0	0.0	.	Atlas-SNP
MEI1	150365	hgsc.bcm.edu	37	22	42114182	42114182	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MEI1-70	NM_152513	exon6	c.G637T	p.E213X	GCAGCTGAGATGC	.	94.0	16.0	86.0	0.0	.	Atlas-SNP
MEI1	150365	hgsc.bcm.edu	37	22	42114184	42114184	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MEI1-70	NM_152513	exon6	c.G639A	p.E213E	AGCTGAGATGCTT	.	96.0	17.0	86.0	0.0	.	Atlas-SNP
NFAM1	150372	hgsc.bcm.edu	37	22	42781209	42781209	+	Missense_Mutation	SNP	G	G	T	rs200124807	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NFAM1-90	NM_145912	exon6	c.C771A	p.F257L	ATCTTCGAATCTA	.	63.0	32.0	76.0	0.0	G|1.000;A|0.000	Atlas-SNP
SCUBE1	80274	hgsc.bcm.edu	37	22	43610215	43610215	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SCUBE1-93	NM_173050	exon16	c.A1934T	p.Q645L	ACACACTGGCCGA	.	211.0	94.0	194.0	0.0	.	Atlas-SNP
EFCAB6	64800	hgsc.bcm.edu	37	22	44151684	44151684	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EFCAB6-97	NM_198856	exon4	c.C13T	p.R5C	ATGTGCGGCAGCA	.	33.0	17.0	48.0	0.0	.	Atlas-SNP
EFCAB6	64800	hgsc.bcm.edu	37	22	44161245	44161245	+	Missense_Mutation	SNP	G	G	A	rs139001785		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EFCAB6-97	NM_022785	exon5	c.C380T	p.P127L	AGGTACGGTACAG	.	189.0	73.0	203.0	0.0	G|0.999;A|0.000	Atlas-SNP
PARVG	64098	hgsc.bcm.edu	37	22	44602230	44602230	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PARVG-90	NM_001137606	exon14	c.G920T	p.R307M	CACTGAGGGTGCT	.	278.0	117.0	182.0	0.0	.	Atlas-SNP
KIAA0930	23313	hgsc.bcm.edu	37	22	45598876	45598876	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIAA0930-90	NM_015264	exon7	c.G862A	p.E288K	CCCGCTCGTGCAT	.	96.0	11.0	81.0	0.0	.	Atlas-SNP
UPK3A	7380	hgsc.bcm.edu	37	22	45691536	45691536	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	UPK3A-90	NM_006953	exon6	c.C800A	p.T267K	CCTACACGTCCGT	.	72.0	25.0	55.0	0.0	.	Atlas-SNP
CELSR1	9620	hgsc.bcm.edu	37	22	46835306	46835306	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CELSR1-525	NM_014246	exon3	c.G4186A	p.E1396K	AGTGCTCTCCTGG	.	84.0	18.0	54.0	0.0	.	Atlas-SNP
ACR	49	hgsc.bcm.edu	37	22	51183082	51183082	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ACR-90	NM_001097	exon5	c.G713A	p.G238E	GACAGGGAGACAG	.	232.0	55.0	186.0	0.0	.	Atlas-SNP
NEFH	4744	hgsc.bcm.edu	37	22	29885581	29885604	+	In_Frame_Del	DEL	AGGCCAAGTCCCCAGAGAAGGAAG	AGGCCAAGTCCCCAGAGAAGGAAG	-	rs200984527		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	AGGCCAAGTCCCCAGAGAAGGAAG	AGGCCAAGTCCCCAGAGAAGGAAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NEFH-90	NM_021076	exon4	c.1951_1974del	p.651_658del	.	.	259.0	89.0	266.0	0.0	.	Atlas-Indel
SNTG2	54221	hgsc.bcm.edu	37	2	1094065	1094065	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SNTG2-136	NM_018968	exon4	c.C294G	p.V98V	CCCTGTCGTCATA	.	120.0	44.0	149.0	0.0	.	Atlas-SNP
MYT1L	23040	hgsc.bcm.edu	37	2	1926733	1926733	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYT1L-95	NM_015025	exon10	c.C808A	p.Q270K	GTCCTTGGGCTAA	.	237.0	92.0	280.0	1.0	.	Atlas-SNP
TSSC1	7260	hgsc.bcm.edu	37	2	3197900	3197900	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TSSC1-90	NM_003310	exon7	c.G691A	p.V231M	CCCGCACCAGCTG	.	82.0	27.0	77.0	0.0	.	Atlas-SNP
TRAPPC12	51112	hgsc.bcm.edu	37	2	3447573	3447573	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_016030	exon6	c.C1441G	p.R481G	TCGATGCGCATCT	.	163.0	66.0	194.0	0.0	.	Atlas-SNP
SOX11	6664	hgsc.bcm.edu	37	2	5834070	5834070	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SOX11-514	NM_003108	exon1	c.G1217T	p.S406I	AGGGCAGCCTGGG	.	200.0	45.0	156.0	0.0	.	Atlas-SNP
FAM84A	151354	hgsc.bcm.edu	37	2	14774305	14774305	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM84A-91	NM_145175	exon2	c.C202A	p.P68T	GAGAGCCCCAGCC	.	73.0	29.0	86.0	0.0	.	Atlas-SNP
NBAS	51594	hgsc.bcm.edu	37	2	15372587	15372587	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NBAS-94	NM_015909	exon47	c.G6195T	p.L2065L	ACCTTCCAGGACC	.	96.0	33.0	85.0	0.0	.	Atlas-SNP
APOB	338	hgsc.bcm.edu	37	2	21228418	21228418	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	APOB-175	NM_000384	exon26	c.G11322T	p.L3774L	AGTTCTCAGCTTC	.	80.0	19.0	81.0	0.0	.	Atlas-SNP
ATAD2B	54454	hgsc.bcm.edu	37	2	24110821	24110821	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ATAD2B-68	NM_001242338	exon4	c.G453C	p.K151N	ATCTCCCTTCTTT	.	130.0	24.0	152.0	0.0	.	Atlas-SNP
EFR3B	22979	hgsc.bcm.edu	37	2	25326646	25326646	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_014971	exon4	c.G353C	p.G118A	TCCTCGGCACCAA	.	136.0	31.0	124.0	0.0	.	Atlas-SNP
SLC30A3	7781	hgsc.bcm.edu	37	2	27479291	27479291	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC30A3-90	NM_003459	exon7	c.G981A	p.T327T	AGTGAGCGTAAGG	.	358.0	68.0	308.0	0.0	.	Atlas-SNP
ALK	238	hgsc.bcm.edu	37	2	29497978	29497978	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ALK-3833	NM_004304	exon11	c.C2028A	p.I676I	GTCAAAGATGGGG	.	113.0	39.0	155.0	0.0	.	Atlas-SNP
XDH	7498	hgsc.bcm.edu	37	2	31610680	31610680	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	XDH-158	NM_000379	exon8	c.G648T	p.L216F	TACCAGCAACTCT	.	58.0	13.0	63.0	0.0	.	Atlas-SNP
NLRC4	58484	hgsc.bcm.edu	37	2	32477523	32477523	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NLRC4-276	NM_021209	exon3	c.G227A	p.W76X	TAGTTCCACTCCT	.	89.0	40.0	88.0	0.0	.	Atlas-SNP
BIRC6	57448	hgsc.bcm.edu	37	2	32673862	32673862	+	Splice_Site	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BIRC6-233	NM_016252	exon22	c.4485-1G>T	.	TTTTCAGATATGG	.	34.0	13.0	51.0	0.0	.	Atlas-SNP
TTC27	55622	hgsc.bcm.edu	37	2	32865410	32865410	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TTC27-90	NM_001193509	exon4	c.A320C	p.K107T	CCTCGAAGCCTAT	.	71.0	20.0	76.0	0.0	.	Atlas-SNP
RASGRP3	25780	hgsc.bcm.edu	37	2	33752422	33752422	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RASGRP3-661	NM_170672	exon11	c.C1026T	p.S342S	AGTCTCCCTGCAG	.	137.0	62.0	136.0	0.0	.	Atlas-SNP
QPCT	25797	hgsc.bcm.edu	37	2	37599541	37599541	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	QPCT-90	NM_012413	exon6	c.T866C	p.L289S	ACTCTTTGGAGGG	.	189.0	76.0	198.0	0.0	.	Atlas-SNP
SLC8A1	6546	hgsc.bcm.edu	37	2	40656207	40656207	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC8A1-93	NM_001112800	exon1	c.C1214G	p.P405R	CTAACAGGGTCAT	.	175.0	41.0	190.0	0.0	.	Atlas-SNP
COX7A2L	9167	hgsc.bcm.edu	37	2	42578413	42578413	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	COX7A2L-226	NM_004718	exon3	c.G291T	p.G97G	GATGGTCCCTCCC	.	309.0	62.0	299.0	0.0	.	Atlas-SNP
GTF2A1L	11036	hgsc.bcm.edu	37	2	48872174	48872174	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_006872	exon5	c.C306A	p.G102G	CTAGGGCACTTCA	.	33.0	8.0	53.0	0.0	.	Atlas-SNP
ASB3	51130	hgsc.bcm.edu	37	2	53992682	53992682	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ASB3-227	NM_016115	exon2	c.A28T	p.T10S	AGCACGTGTCCGC	.	100.0	41.0	120.0	0.0	.	Atlas-SNP
GPR75	10936	hgsc.bcm.edu	37	2	54080954	54080954	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPR75-92	NM_006794	exon2	c.G940T	p.A314S	CCTTGGCAGTGGA	.	177.0	63.0	182.0	0.0	.	Atlas-SNP
ASPRV1	151516	hgsc.bcm.edu	37	2	70188807	70188807	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ASPRV1-69	NM_152792	exon1	c.G14T	p.G5V	CTGGCCCCTGGGC	.	66.0	13.0	59.0	0.0	.	Atlas-SNP
ZNF638	27332	hgsc.bcm.edu	37	2	71629179	71629179	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF638-94	NM_014497	exon16	c.G2791T	p.G931C	TTTGGTGGTTTAA	.	112.0	20.0	117.0	0.0	.	Atlas-SNP
DYSF	8291	hgsc.bcm.edu	37	2	71709010	71709010	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DYSF-158	NM_001130982	exon3	c.G149C	p.G50A	TCCAGGGATTTGA	.	46.0	13.0	38.0	0.0	.	Atlas-SNP
EGR4	1961	hgsc.bcm.edu	37	2	73519448	73519448	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EGR4-90	NM_001965	exon2	c.G907C	p.A303P	TGAAGGCAGAGAC	.	96.0	12.0	51.0	0.0	.	Atlas-SNP
LOXL3	84695	hgsc.bcm.edu	37	2	74761338	74761338	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LOXL3-226	NM_032603	exon12	c.C1965A	p.A655A	AAAGTTGGCACAC	.	190.0	31.0	204.0	0.0	.	Atlas-SNP
LOXL3	84695	hgsc.bcm.edu	37	2	74761339	74761339	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LOXL3-226	NM_032603	exon12	c.C1964A	p.A655D	AAGTTGGCACACT	.	192.0	31.0	203.0	0.0	.	Atlas-SNP
TACR1	6869	hgsc.bcm.edu	37	2	75425974	75425974	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TACR1-523	NM_015727	exon1	c.C87G	p.A29A	TTGCCAGGCTGGT	.	302.0	89.0	322.0	0.0	.	Atlas-SNP
LRRTM4	80059	hgsc.bcm.edu	37	2	77746839	77746839	+	Missense_Mutation	SNP	G	G	C	rs76327576	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LRRTM4-94	NM_024993	exon3	c.C156G	p.F52L	ATCTGCGAAAGCA	.	137.0	24.0	191.0	0.0	G|0.996;C|0.004	Atlas-SNP
REG3A	5068	hgsc.bcm.edu	37	2	79385466	79385466	+	Missense_Mutation	SNP	G	G	C	rs11554092	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	REG3A-91	NM_002580	exon4	c.C319G	p.H107D	GGTCATGGAGCCC	.	131.0	28.0	163.0	0.0	.	Atlas-SNP
CTNNA2	1496	hgsc.bcm.edu	37	2	79878752	79878752	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CTNNA2-368	NM_004389	exon2	c.G70T	p.V24L	CTAACAGTGGAAA	.	91.0	34.0	111.0	0.0	.	Atlas-SNP
CHMP3	51652	hgsc.bcm.edu	37	2	86769415	86769415	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_016079	exon2	c.G66T	p.K22N	TCTTATCTTCAAT	.	106.0	31.0	108.0	0.0	.	Atlas-SNP
STARD7	56910	hgsc.bcm.edu	37	2	96858161	96858161	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	STARD7-68	NM_020151	exon6	c.G789T	p.R263S	TCTGACCCTGACG	.	111.0	48.0	96.0	0.0	.	Atlas-SNP
INPP4A	3631	hgsc.bcm.edu	37	2	99181141	99181141	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	INPP4A-227	NM_001134225	exon19	c.G2067T	p.R689S	GCTGAGGAACTGC	.	143.0	30.0	158.0	0.0	.	Atlas-SNP
TBC1D8	11138	hgsc.bcm.edu	37	2	101670676	101670676	+	Silent	SNP	G	G	A	rs78556703	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TBC1D8-25	NM_001102426	exon4	c.C480T	p.V160V	GTAGGTGACCAGC	.	123.0	20.0	166.0	0.0	G|0.993;A|0.007	Atlas-SNP
RFX8	731220	hgsc.bcm.edu	37	2	102038877	102038877	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001145664	exon3	c.A130T	p.R44W	ATCTCCTGAATTC	.	133.0	37.0	157.0	0.0	.	Atlas-SNP
SLC9A4	389015	hgsc.bcm.edu	37	2	103090435	103090435	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC9A4-92	NM_001011552	exon1	c.G217T	p.V73F	TATGAGGTCACTC	.	95.0	37.0	102.0	0.0	.	Atlas-SNP
RGPD3	653489	hgsc.bcm.edu	37	2	107041065	107041065	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RGPD3-23	NM_001144013	exon20	c.C3358T	p.L1120L	GCTTCAGGTTCAT	.	27.0	12.0	40.0	0.0	.	Atlas-SNP
ST6GAL2	84620	hgsc.bcm.edu	37	2	107423334	107423334	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ST6GAL2-191	NM_001142351	exon6	c.G1390T	p.E464X	ACAGCTCCGTCTG	.	157.0	68.0	196.0	0.0	.	Atlas-SNP
RANBP2	5903	hgsc.bcm.edu	37	2	109384075	109384075	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RANBP2-675	NM_006267	exon20	c.A7080C	p.L2360F	GATTTTACAGAAT	.	217.0	72.0	213.0	0.0	.	Atlas-SNP
IL36G	56300	hgsc.bcm.edu	37	2	113736244	113736244	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IL36G-91	NM_019618	exon2	c.G29T	p.G10V	CTGATGGTGGAGG	.	163.0	75.0	191.0	0.0	.	Atlas-SNP
CNTNAP5	129684	hgsc.bcm.edu	37	2	125192069	125192069	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CNTNAP5-524	NM_130773	exon5	c.G538A	p.V180I	TCAGATGTTGCTG	.	71.0	28.0	93.0	0.0	.	Atlas-SNP
CNTNAP5	129684	hgsc.bcm.edu	37	2	125284869	125284869	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CNTNAP5-524	NM_130773	exon10	c.C1482A	p.P494P	GTGCCCCGACAAT	.	151.0	68.0	160.0	0.0	.	Atlas-SNP
CNTNAP5	129684	hgsc.bcm.edu	37	2	125405388	125405388	+	Silent	SNP	C	C	A	rs200795882	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CNTNAP5-524	NM_130773	exon13	c.C1927A	p.R643R	CGAGTGCGGGGCG	.	371.0	161.0	422.0	1.0	.	Atlas-SNP
MYO7B	4648	hgsc.bcm.edu	37	2	128367426	128367426	+	Silent	SNP	C	C	A	rs202235279	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYO7B-47	NM_001080527	exon24	c.C3027A	p.A1009A	CCAGGCCGCCCTG	.	163.0	36.0	173.0	0.0	C|0.999;T|0.000	Atlas-SNP
UGGT1	56886	hgsc.bcm.edu	37	2	128890799	128890799	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	UGGT1-91	NM_020120	exon14	c.G1462C	p.V488L	CCTGGTGTTATTC	.	117.0	34.0	120.0	0.0	.	Atlas-SNP
CCDC74B	91409	hgsc.bcm.edu	37	2	130898790	130898790	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CCDC74B-90	NM_207310	exon4	c.G624T	p.E208D	GGGCTCCTCTTCC	.	353.0	111.0	349.0	0.0	.	Atlas-SNP
GPR39	2863	hgsc.bcm.edu	37	2	133174919	133174919	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPR39-226	NM_001508	exon1	c.T304A	p.S102T	ACCACGTCCAGCT	.	161.0	73.0	180.0	0.0	.	Atlas-SNP
NCKAP5	344148	hgsc.bcm.edu	37	2	134275043	134275043	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_207481	exon3	c.G55C	p.D19H	TGCTGTCTAGAGA	.	71.0	13.0	75.0	0.0	.	Atlas-SNP
MAP3K19	80122	hgsc.bcm.edu	37	2	135738654	135738654	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_025052	exon9	c.C3657G	p.T1219T	ACTGTGGGTGCCA	.	83.0	18.0	56.0	0.0	.	Atlas-SNP
LRP1B	53353	hgsc.bcm.edu	37	2	141055390	141055390	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LRP1B-311	NM_018557	exon84	c.C12954A	p.D4318E	ACATCTGTCTCCG	.	102.0	55.0	204.0	0.0	.	Atlas-SNP
LRP1B	53353	hgsc.bcm.edu	37	2	141116494	141116494	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LRP1B-311	NM_018557	exon73	c.C11153A	p.T3718K	GGTCTCGTGGATG	.	45.0	17.0	83.0	0.0	.	Atlas-SNP
LRP1B	53353	hgsc.bcm.edu	37	2	141245192	141245192	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LRP1B-311	NM_018557	exon58	c.C9237T	p.D3079D	CTTAATGTCACTT	.	54.0	15.0	50.0	0.0	.	Atlas-SNP
KIF5C	3800	hgsc.bcm.edu	37	2	149837965	149837965	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIF5C-69	NM_004522	exon14	c.G1459C	p.V487L	AAAGAAGTTCTCC	.	140.0	51.0	117.0	0.0	.	Atlas-SNP
RIF1	55183	hgsc.bcm.edu	37	2	152320981	152320981	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RIF1-300	NM_001177664	exon30	c.G4947T	p.V1649V	AAATGTGTGTGAG	.	78.0	22.0	107.0	0.0	.	Atlas-SNP
RIF1	55183	hgsc.bcm.edu	37	2	152321633	152321633	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RIF1-300	NM_001177664	exon30	c.G5599A	p.G1867R	TGTTTAGGAGACT	.	47.0	15.0	48.0	0.0	.	Atlas-SNP
NEB	4703	hgsc.bcm.edu	37	2	152521284	152521284	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NEB-145	NM_001164507	exon43	c.A5332G	p.T1778A	TCATGGTGATTTG	.	163.0	76.0	189.0	0.0	.	Atlas-SNP
NEB	4703	hgsc.bcm.edu	37	2	152537258	152537258	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NEB-145	NM_001164507	exon30	c.G3028T	p.A1010S	TCTGGGCCTGGTT	.	151.0	54.0	121.0	0.0	.	Atlas-SNP
NEB	4703	hgsc.bcm.edu	37	2	152563490	152563490	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NEB-145	NM_001164507	exon13	c.G1057T	p.E353X	TCTTTTCATAGTC	.	38.0	11.0	41.0	0.0	.	Atlas-SNP
CACNB4	785	hgsc.bcm.edu	37	2	152727077	152727077	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CACNB4-24	NM_001145798	exon8	c.G667T	p.V223L	CTAACACCACCGG	.	333.0	100.0	251.0	0.0	.	Atlas-SNP
RPRM	56475	hgsc.bcm.edu	37	2	154334873	154334873	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RPRM-204	NM_019845	exon1	c.G207T	p.V69V	GAAGACCACGGTG	.	447.0	163.0	268.0	0.0	.	Atlas-SNP
GALNT13	114805	hgsc.bcm.edu	37	2	154996920	154996920	+	Silent	SNP	G	G	A	rs114793552	bycluster;by1000genomes	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GALNT13-95	NM_052917	exon4	c.G213A	p.Q71Q	TGACCAGGAGAAA	.	147.0	53.0	146.0	0.0	G|1.000;A|0.000	Atlas-SNP
BAZ2B	29994	hgsc.bcm.edu	37	2	160205740	160205740	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BAZ2B-94	NM_013450	exon29	c.G4915C	p.G1639R	CCACACCAGTGGG	.	50.0	21.0	41.0	0.0	.	Atlas-SNP
SLC4A10	57282	hgsc.bcm.edu	37	2	162820704	162820704	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC4A10-229	NM_001178016	exon22	c.C2865A	p.Y955X	TATATACCTAAGG	.	76.0	24.0	72.0	0.0	.	Atlas-SNP
FAP	2191	hgsc.bcm.edu	37	2	163059625	163059625	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAP-93	NM_004460	exon13	c.G1078A	p.D360N	TGGCATCATAGCT	.	95.0	29.0	100.0	0.0	.	Atlas-SNP
GRB14	2888	hgsc.bcm.edu	37	2	165353720	165353720	+	Splice_Site	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GRB14-420	NM_004490	exon12	c.1294+1G>T	.	GACATACCCATGT	.	172.0	56.0	161.0	0.0	.	Atlas-SNP
SCN3A	6328	hgsc.bcm.edu	37	2	165947786	165947786	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SCN3A-141	NM_006922	exon28	c.C4877A	p.A1626D	ATCCTGGCAAGAC	.	240.0	72.0	243.0	0.0	.	Atlas-SNP
SCN3A	6328	hgsc.bcm.edu	37	2	166032795	166032795	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SCN3A-141	NM_006922	exon3	c.C110A	p.P37H	TTTTTGGGCTTCT	.	113.0	44.0	92.0	0.0	.	Atlas-SNP
SCN2A	6326	hgsc.bcm.edu	37	2	166198817	166198817	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SCN2A-142	NM_001040143	exon14	c.G2400A	p.G800G	CACAGGGATCTTC	.	82.0	14.0	73.0	0.0	.	Atlas-SNP
CSRNP3	80034	hgsc.bcm.edu	37	2	166535679	166535679	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CSRNP3-157	NM_001172173	exon7	c.G1174T	p.G392C	GGAGATGGCTTCG	.	73.0	28.0	75.0	0.0	.	Atlas-SNP
CSRNP3	80034	hgsc.bcm.edu	37	2	166535970	166535970	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CSRNP3-157	NM_001172173	exon7	c.G1465A	p.G489S	GCCTATGGTGCCT	.	255.0	81.0	224.0	0.0	.	Atlas-SNP
TTC21B	79809	hgsc.bcm.edu	37	2	166781171	166781171	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TTC21B-94	NM_024753	exon12	c.A1404T	p.Q468H	AAGAGGTTGCCCA	.	132.0	56.0	133.0	0.0	.	Atlas-SNP
SCN9A	6335	hgsc.bcm.edu	37	2	167060640	167060640	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SCN9A-181	NM_002977	exon26	c.G4566T	p.M1522I	TTCTACCATCATG	.	101.0	26.0	104.0	0.0	.	Atlas-SNP
XIRP2	129446	hgsc.bcm.edu	37	2	168100697	168100697	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	XIRP2-104	NM_001199144	exon7	c.C2129T	p.T710I	AGTACACACGAAC	.	154.0	50.0	174.0	0.0	.	Atlas-SNP
XIRP2	129446	hgsc.bcm.edu	37	2	168107417	168107417	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	XIRP2-104	NM_001199144	exon7	c.C8849A	p.P2950H	CTTCCCCTTCTCC	.	127.0	40.0	111.0	0.0	.	Atlas-SNP
XIRP2	129446	hgsc.bcm.edu	37	2	168107715	168107715	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	XIRP2-104	NM_001199144	exon7	c.T9147G	p.Y3049X	TACTTATGTTCAT	.	175.0	65.0	137.0	0.0	.	Atlas-SNP
CERS6	253782	hgsc.bcm.edu	37	2	169404169	169404169	+	Silent	SNP	G	G	T	rs112858320	byfrequency;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001256126	exon2	c.G234T	p.P78P	TGCTCCGCCCAAT	.	105.0	45.0	94.0	0.0	G|0.997;A|0.003	Atlas-SNP
G6PC2	57818	hgsc.bcm.edu	37	2	169759005	169759005	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	G6PC2-91	NM_021176	exon2	c.A269T	p.Y90F	AGATTTACCCAAA	.	81.0	26.0	111.0	0.0	.	Atlas-SNP
LRP2	4036	hgsc.bcm.edu	37	2	170088312	170088312	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LRP2-175	NM_004525	exon31	c.C5139A	p.C1713X	AAGCAGGCAGAGA	.	443.0	151.0	419.0	0.0	.	Atlas-SNP
HOXD13	3239	hgsc.bcm.edu	37	2	176957863	176957863	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HOXD13-658	NM_000523	exon1	c.G245T	p.R82L	CTGAGCGCACGGG	.	47.0	14.0	14.0	0.0	.	Atlas-SNP
HOXD8	3234	hgsc.bcm.edu	37	2	176996244	176996244	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HOXD8-90	NM_001199747	exon3	c.C225A	p.D75E	CAAGGACAAATTT	.	133.0	47.0	120.0	0.0	.	Atlas-SNP
OSBPL6	114880	hgsc.bcm.edu	37	2	179209068	179209068	+	Missense_Mutation	SNP	C	C	A	rs137879178	byfrequency;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OSBPL6-69	NM_001201480	exon12	c.C1043A	p.A348E	GGCTAGCGGCAGC	.	120.0	38.0	99.0	0.0	C|0.999;T|0.001	Atlas-SNP
TTN	7273	hgsc.bcm.edu	37	2	179406032	179406032	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TTN-636	NM_001267550	exon350	c.C97772A	p.P32591H	ACGATGGGTTTGG	.	184.0	68.0	188.0	0.0	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	37	2	179422421	179422421	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TTN-636	NM_001267550	exon328	c.C87660A	p.I29220I	ATCACTGATGCCA	.	287.0	92.0	220.0	0.0	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	37	2	179426459	179426459	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TTN-636	NM_001267550	exon326	c.C84400A	p.R28134S	CATAGCGGTTTTC	.	160.0	52.0	192.0	0.0	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	37	2	179426490	179426490	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TTN-636	NM_001267550	exon326	c.T84369A	p.S28123R	ATACTCACTTCCT	.	186.0	67.0	212.0	0.0	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	37	2	179429435	179429435	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TTN-636	NM_001267550	exon326	c.G81424T	p.E27142X	CATACTCAAGGCC	.	126.0	22.0	132.0	0.0	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	37	2	179430005	179430005	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TTN-636	NM_001267550	exon326	c.G80854A	p.V26952I	CCGTTACGGTGTA	.	289.0	95.0	259.0	0.0	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	37	2	179437248	179437248	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TTN-636	NM_001267550	exon326	c.A73611G	p.T24537T	TGTGAGTGTGACA	.	121.0	44.0	92.0	0.0	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	37	2	179481738	179481738	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TTN-636	NM_001267550	exon256	c.G47878A	p.E15960K	TTGGTTCAACTAC	.	31.0	9.0	46.0	0.0	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	37	2	179481739	179481739	+	Silent	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TTN-636	NM_001267550	exon256	c.T47877A	p.V15959V	TGGTTCAACTACA	.	33.0	10.0	48.0	0.0	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	37	2	179482958	179482958	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TTN-636	NM_001267550	exon252	c.C47227A	p.P15743T	CTACTGGCTCACC	.	99.0	33.0	109.0	0.0	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	37	2	179505334	179505334	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TTN-636	NM_001267550	exon221	c.C40657T	p.P13553S	CAACAGGTTTTGG	.	88.0	29.0	106.0	0.0	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	37	2	179517194	179517194	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TTN-636	NM_001267550	exon202	c.C39118T	p.P13040S	TAACAGGTGTGAC	.	94.0	30.0	91.0	0.0	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	37	2	179560965	179560965	+	Silent	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TTN-636	NM_001267550	exon114	c.T30834A	p.A10278A	TTCTTCAGCTTTA	.	19.0	7.0	22.0	0.0	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	37	2	179598048	179598048	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TTN-636	NM_001267550	exon54	c.G15972A	p.E5324E	GTGCAGCTCAGCT	.	99.0	31.0	96.0	0.0	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	37	2	179610937	179610937	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TTN-636	NM_133379	exon46	c.C16190A	p.A5397D	AATACAGCATCTG	.	62.0	23.0	69.0	0.0	.	Atlas-SNP
NCKAP1	10787	hgsc.bcm.edu	37	2	183817593	183817593	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NCKAP1-92	NM_013436	exon22	c.A2431T	p.M811L	CTTTCATTGCAGG	.	152.0	46.0	122.0	0.0	.	Atlas-SNP
ZNF804A	91752	hgsc.bcm.edu	37	2	185800948	185800948	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF804A-163	NM_194250	exon4	c.T825C	p.T275T	GAAAACTAACTCT	.	60.0	19.0	63.0	0.0	.	Atlas-SNP
FSIP2	401024	hgsc.bcm.edu	37	2	186670638	186670638	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FSIP2-90	NM_173651	exon17	c.T16872A	p.N5624K	TGAGAATGTATCA	.	139.0	56.0	131.0	0.0	.	Atlas-SNP
FAM171B	165215	hgsc.bcm.edu	37	2	187625878	187625878	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM171B-141	NM_177454	exon7	c.T1051C	p.Y351H	ACTGCCTACCACA	.	423.0	175.0	377.0	0.0	.	Atlas-SNP
PMS1	5378	hgsc.bcm.edu	37	2	190719368	190719368	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PMS1-1396	NM_000534	exon9	c.G1370C	p.C457S	AAACTTGTTTTAT	.	98.0	30.0	101.0	0.0	.	Atlas-SNP
MSTN	2660	hgsc.bcm.edu	37	2	190927320	190927320	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MSTN-650	NM_005259	exon1	c.G3T	p.M1I	TTTTTGCATGATT	.	36.0	13.0	31.0	0.0	.	Atlas-SNP
TMEFF2	23671	hgsc.bcm.edu	37	2	192863915	192863915	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TMEFF2-524	NM_016192	exon6	c.T556A	p.C186S	GAGAACAGTCAAT	.	97.0	34.0	80.0	0.0	.	Atlas-SNP
TMEFF2	23671	hgsc.bcm.edu	37	2	193044393	193044393	+	Splice_Site	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TMEFF2-524	NM_016192	exon5	c.439+1G>T	.	CTCCTACCTCCAT	.	151.0	60.0	207.0	0.0	.	Atlas-SNP
PLCL1	5334	hgsc.bcm.edu	37	2	198950268	198950268	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PLCL1-228	NM_006226	exon2	c.C2027A	p.P676Q	CGGGTCCAATGAT	.	78.0	20.0	93.0	0.0	.	Atlas-SNP
ZDBF2	57683	hgsc.bcm.edu	37	2	207169902	207169902	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZDBF2-3	NM_020923	exon5	c.G650T	p.S217I	CAGTTAGCAAATG	.	117.0	36.0	129.0	0.0	.	Atlas-SNP
ZDBF2	57683	hgsc.bcm.edu	37	2	207170268	207170268	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZDBF2-3	NM_020923	exon5	c.G1016A	p.C339Y	TGGATTGTACCCA	.	46.0	13.0	29.0	0.0	.	Atlas-SNP
ZDBF2	57683	hgsc.bcm.edu	37	2	207174022	207174022	+	Silent	SNP	T	T	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZDBF2-3	NM_020923	exon5	c.T4770G	p.T1590T	CTCTACTCCCTCA	.	46.0	18.0	44.0	0.0	.	Atlas-SNP
ZDBF2	57683	hgsc.bcm.edu	37	2	207174333	207174333	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZDBF2-3	NM_020923	exon5	c.G5081T	p.R1694I	ATCCAAGAAATGC	.	69.0	28.0	50.0	0.0	.	Atlas-SNP
ADAM23	8745	hgsc.bcm.edu	37	2	207454220	207454220	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADAM23-228	NM_003812	exon21	c.G1940T	p.W647L	ACCGGTGGATTCA	.	104.0	38.0	81.0	0.0	.	Atlas-SNP
DYTN	391475	hgsc.bcm.edu	37	2	207527859	207527859	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DYTN-23	NM_001093730	exon11	c.C1401A	p.S467R	TGTTTGGCTTTGT	.	307.0	100.0	264.0	0.0	.	Atlas-SNP
FASTKD2	22868	hgsc.bcm.edu	37	2	207655353	207655353	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FASTKD2-118	NM_001136193	exon11	c.A1956G	p.R652R	CCCCAGAGGATTC	.	59.0	13.0	63.0	0.0	.	Atlas-SNP
CPS1	1373	hgsc.bcm.edu	37	2	211457659	211457659	+	Silent	SNP	C	C	G	rs148322072	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CPS1-162	NM_001875	exon11	c.C1143G	p.T381T	GGTCACCCCGGGG	.	48.0	21.0	61.0	0.0	C|1.000;T|0.000	Atlas-SNP
CPS1	1373	hgsc.bcm.edu	37	2	211527846	211527846	+	Splice_Site	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CPS1-162	NM_001122633	exon34	c.3946-1G>T	.	CCAACAGGCTCCC	.	41.0	12.0	33.0	0.0	.	Atlas-SNP
ERBB4	2066	hgsc.bcm.edu	37	2	212285242	212285242	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ERBB4-1461	NM_005235	exon25	c.A3059T	p.E1020V	TACTCCTCAGCAT	.	76.0	38.0	95.0	0.0	.	Atlas-SNP
ERBB4	2066	hgsc.bcm.edu	37	2	212578300	212578300	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ERBB4-1461	NM_005235	exon8	c.G957T	p.G319G	TTTAATCCCATTT	.	99.0	38.0	63.0	0.0	.	Atlas-SNP
ERBB4	2066	hgsc.bcm.edu	37	2	212589908	212589908	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ERBB4-1461	NM_005235	exon6	c.G634T	p.V212L	CACACACCGTCCT	.	189.0	81.0	184.0	0.0	.	Atlas-SNP
PRKAG3	53632	hgsc.bcm.edu	37	2	219695074	219695074	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PRKAG3-659	NM_017431	exon4	c.C260T	p.T87I	AGCCCGGTGGACT	.	203.0	63.0	154.0	0.0	.	Atlas-SNP
ANKZF1	55139	hgsc.bcm.edu	37	2	220098512	220098512	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ANKZF1-92	NM_001042410	exon8	c.C895G	p.P299A	CGTGCTCCCCGCT	.	115.0	23.0	100.0	0.0	.	Atlas-SNP
PTPRN	5798	hgsc.bcm.edu	37	2	220159708	220159708	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PTPRN-229	NM_001199764	exon19	c.G2394A	p.L798L	GAAGTCCAGCAGG	.	109.0	40.0	28.0	0.0	.	Atlas-SNP
CHPF	79586	hgsc.bcm.edu	37	2	220405282	220405282	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CHPF-90	NM_024536	exon4	c.G1151T	p.R384L	GCCGGGCGGGATG	.	191.0	61.0	109.0	0.0	.	Atlas-SNP
OBSL1	23363	hgsc.bcm.edu	37	2	220419228	220419228	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OBSL1-71	NM_015311	exon15	c.C4844A	p.S1615Y	CGCAGGGAATCCG	.	384.0	130.0	318.0	1.0	.	Atlas-SNP
SLC4A3	6508	hgsc.bcm.edu	37	2	220493241	220493241	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC4A3-157	NM_005070	exon3	c.G166T	p.A56S	CCCCCGGCCTGGG	.	467.0	161.0	316.0	0.0	.	Atlas-SNP
SCG2	7857	hgsc.bcm.edu	37	2	224463929	224463929	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SCG2-69	NM_003469	exon2	c.G72A	p.G24G	TTCAGCCCCAGAG	.	177.0	63.0	154.0	0.0	.	Atlas-SNP
SPHKAP	80309	hgsc.bcm.edu	37	2	228858308	228858308	+	Missense_Mutation	SNP	G	G	T	rs192502309		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SPHKAP-167	NM_001142644	exon9	c.C4663A	p.L1555I	TGCCAAGACTGCT	.	200.0	69.0	163.0	0.0	G|0.999;T|0.001	Atlas-SNP
SPHKAP	80309	hgsc.bcm.edu	37	2	228883407	228883407	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SPHKAP-167	NM_001142644	exon7	c.C2163G	p.F721L	CTTCTTGAACGTG	.	118.0	37.0	97.0	0.0	.	Atlas-SNP
SPHKAP	80309	hgsc.bcm.edu	37	2	228883709	228883709	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SPHKAP-167	NM_001142644	exon7	c.A1861T	p.K621X	CCTCCTTGAGCAA	.	157.0	57.0	140.0	0.0	.	Atlas-SNP
SPHKAP	80309	hgsc.bcm.edu	37	2	228883760	228883760	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SPHKAP-167	NM_001142644	exon7	c.G1810C	p.G604R	CTAAACCACAAAG	.	102.0	38.0	111.0	0.0	.	Atlas-SNP
SPHKAP	80309	hgsc.bcm.edu	37	2	228884194	228884194	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SPHKAP-167	NM_001142644	exon7	c.G1376A	p.S459N	GCATCACTGCCAT	.	89.0	35.0	69.0	0.0	.	Atlas-SNP
SPHKAP	80309	hgsc.bcm.edu	37	2	228884765	228884765	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SPHKAP-167	NM_001142644	exon7	c.G805T	p.E269X	TGTCTTCCAAAGC	.	109.0	34.0	95.0	0.0	.	Atlas-SNP
PID1	55022	hgsc.bcm.edu	37	2	229890643	229890643	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PID1-94	NM_001100818	exon3	c.A359T	p.E120V	GTGGCCTCCCCTT	.	254.0	80.0	219.0	0.0	.	Atlas-SNP
TRIP12	9320	hgsc.bcm.edu	37	2	230723756	230723756	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TRIP12-572	NM_004238	exon3	c.G633C	p.S211S	GGAGGCCGAGGCT	.	88.0	27.0	72.0	0.0	.	Atlas-SNP
ALPI	248	hgsc.bcm.edu	37	2	233322794	233322794	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ALPI-90	NM_001631	exon8	c.C943A	p.L315M	GCTGCCCTGCGCC	.	505.0	180.0	339.0	1.0	.	Atlas-SNP
SAG	6295	hgsc.bcm.edu	37	2	234229340	234229340	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SAG-23	NM_000541	exon5	c.C246A	p.T82T	CTTGACCTTCCGC	.	149.0	55.0	118.0	0.0	.	Atlas-SNP
UGT1A5	54579	hgsc.bcm.edu	37	2	234621950	234621950	+	Missense_Mutation	SNP	C	C	A	rs200200998	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	UGT1A5-3	NM_019078	exon1	c.C313A	p.H105N	ACAGAACATCTTC	.	116.0	36.0	128.0	0.0	C|1.000;T|0.000	Atlas-SNP
OTOS	150677	hgsc.bcm.edu	37	2	241078654	241078654	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OTOS-68	NM_148961	exon4	c.G203A	p.R68Q	AAGGTTCGGGCCA	.	229.0	31.0	227.0	0.0	.	Atlas-SNP
KIF1A	547	hgsc.bcm.edu	37	2	241658532	241658532	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIF1A-91	NM_001244008	exon47	c.G5105T	p.R1702L	TAGGGGCGCCGCA	.	269.0	104.0	164.0	0.0	.	Atlas-SNP
KIF1A	547	hgsc.bcm.edu	37	2	241696843	241696843	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIF1A-91	NM_001244008	exon27	c.G2751T	p.E917D	CTCATCCTCCTCC	.	230.0	13.0	159.0	0.0	.	Atlas-SNP
AGXT	189	hgsc.bcm.edu	37	2	241812461	241812461	+	Missense_Mutation	SNP	G	G	T	rs34664134	byfrequency;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	AGXT-90	NM_000030	exon5	c.G590T	p.R197L	TGGACCGGCAAGG	.	141.0	46.0	107.0	0.0	G|0.993;A|0.007	Atlas-SNP
PASK	23178	hgsc.bcm.edu	37	2	242066763	242066763	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PASK-536	NM_001252124	exon10	c.G1567T	p.E523X	GGCTCTCTATTGC	.	106.0	41.0	87.0	0.0	.	Atlas-SNP
HDLBP	3069	hgsc.bcm.edu	37	2	242192402	242192402	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HDLBP-290	NM_001243900	exon11	c.A1243T	p.R415W	GGTGCCTGTGGAA	.	220.0	68.0	192.0	0.0	.	Atlas-SNP
ATG4B	23192	hgsc.bcm.edu	37	2	242606247	242606247	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_013325	exon8	c.G726T	p.T242T	GGAGACGCTGAAG	.	63.0	22.0	48.0	0.0	.	Atlas-SNP
FAM49A	81553	hgsc.bcm.edu	37	2	16743378	16743378	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM49A-226	NM_030797	exon6	c.331delA	p.T111fs	.	.	117.0	41.0	111.0	0.0	.	Atlas-Indel
ALK	238	hgsc.bcm.edu	37	2	29754793	29754793	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ALK-3833	NM_004304	exon4	c.1143delA	p.P381fs	.	.	88.0	37.0	83.0	0.0	.	Atlas-Indel
ALMS1	7840	hgsc.bcm.edu	37	2	73717464	73717464	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ALMS1-142	NM_015120	exon10	c.8374delA	p.R2792fs	.	.	29.0	10.0	21.0	0.0	.	Atlas-Indel
TEX37	200523	hgsc.bcm.edu	37	2	88828736	88828736	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_152670	exon4	c.286delA	p.R96fs	.	.	291.0	83.0	239.0	0.0	.	Atlas-Indel
DPP10	57628	hgsc.bcm.edu	37	2	116535388	116535388	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DPP10-142	NM_001178037	exon15	c.1326delT	p.S442fs	.	.	106.0	44.0	115.0	0.0	.	Atlas-Indel
GALNT3	2591	hgsc.bcm.edu	37	2	166626967	166626967	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GALNT3-92	NM_004482	exon2	c.245delT	p.I82fs	.	.	135.0	36.0	117.0	0.0	.	Atlas-Indel
C2orf72	257407	hgsc.bcm.edu	37	2	231906104	231906104	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001144994	exon2	c.727delG	p.A243fs	.	.	105.0	35.0	73.0	0.0	.	Atlas-Indel
TLX2	3196	hgsc.bcm.edu	37	2	74742065	74742065	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TLX2-90	NM_016170	exon1	c.131delA	p.H44fs	.	.	169.0	27.0	125.0	0.0	.	Pindel
CHL1	10752	hgsc.bcm.edu	37	3	361487	361487	+	Missense_Mutation	SNP	C	C	G	rs139673243		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CHL1-583	NM_001253387	exon3	c.C28G	p.L10V	AGAGGACTAATCG	.	30.0	19.0	43.0	0.0	C|1.000;G|0.000	Atlas-SNP
ITPR1	3708	hgsc.bcm.edu	37	3	4693830	4693830	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ITPR1-710	NM_001099952	exon11	c.G879T	p.R293R	ATGTCGGGGCGGA	.	163.0	110.0	138.0	0.0	.	Atlas-SNP
GRM7	2917	hgsc.bcm.edu	37	3	6903300	6903300	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GRM7-526	NM_000844	exon1	c.G225T	p.G75G	AAACGGGATCCAC	.	246.0	165.0	173.0	1.0	.	Atlas-SNP
SETD5	55209	hgsc.bcm.edu	37	3	9483874	9483874	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SETD5-70	NM_001080517	exon10	c.G1022T	p.R341L	ATGCCCGTACTTT	.	65.0	41.0	68.0	0.0	.	Atlas-SNP
WNT7A	7476	hgsc.bcm.edu	37	3	13896295	13896295	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	WNT7A-948	NM_004625	exon3	c.C304A	p.R102R	CCTCCCGGCTCCC	.	62.0	45.0	52.0	0.0	.	Atlas-SNP
TGFBR2	7048	hgsc.bcm.edu	37	3	30713626	30713626	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TGFBR2-1698	NM_003242	exon4	c.G951T	p.L317F	GGAGTTGGGGAAA	.	113.0	74.0	160.0	1.0	.	Atlas-SNP
TTC21A	199223	hgsc.bcm.edu	37	3	39151570	39151570	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TTC21A-91	NM_001105513	exon3	c.G208T	p.D70Y	CACCCAGACGTGT	.	67.0	37.0	118.0	0.0	.	Atlas-SNP
CX3CR1	1524	hgsc.bcm.edu	37	3	39307473	39307473	+	Silent	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CX3CR1-658	NM_001171174	exon2	c.T624A	p.L208L	GTCACCAAGGCAT	.	94.0	49.0	141.0	0.0	.	Atlas-SNP
CX3CR1	1524	hgsc.bcm.edu	37	3	39307475	39307475	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CX3CR1-658	NM_001171174	exon2	c.C622A	p.L208I	CACCAAGGCATTC	.	91.0	47.0	140.0	0.0	.	Atlas-SNP
CCDC13	152206	hgsc.bcm.edu	37	3	42787495	42787495	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CCDC13-91	NM_144719	exon7	c.G745A	p.D249N	TGATGTCTTCCCC	.	100.0	44.0	149.0	0.0	.	Atlas-SNP
COL7A1	1294	hgsc.bcm.edu	37	3	48607044	48607044	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	COL7A1-160	NM_000094	exon101	c.G7595C	p.R2532P	GCACCCCGTGGGC	.	75.0	44.0	86.0	0.0	.	Atlas-SNP
DNAH1	25981	hgsc.bcm.edu	37	3	52402787	52402787	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DNAH1-67	NM_015512	exon37	c.G5796T	p.R1932R	CATCCGGGCGGGG	.	144.0	78.0	184.0	0.0	.	Atlas-SNP
DNAH12	201625	hgsc.bcm.edu	37	3	57458294	57458294	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DNAH12-47	NM_178504	exon14	c.C1755A	p.P585P	AAAGATGGGATTA	.	207.0	118.0	249.0	0.0	.	Atlas-SNP
CADPS	8618	hgsc.bcm.edu	37	3	62535700	62535700	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CADPS-281	NM_183393	exon11	c.G1844T	p.W615L	TGGACCCACAGGA	.	166.0	90.0	175.0	0.0	.	Atlas-SNP
ROBO2	6092	hgsc.bcm.edu	37	3	77607213	77607213	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ROBO2-328	NM_002942	exon9	c.C1350A	p.S450R	AATTAGCTGGTTA	.	130.0	70.0	173.0	0.0	.	Atlas-SNP
ROBO1	6091	hgsc.bcm.edu	37	3	78795964	78795964	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ROBO1-67	NM_002941	exon5	c.G586T	p.G196C	GATGGCCTCGTGG	.	79.0	44.0	97.0	0.0	.	Atlas-SNP
POU1F1	5449	hgsc.bcm.edu	37	3	87322579	87322579	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	POU1F1-226	NM_001122757	exon2	c.G210T	p.L70F	GTTTCCCAACGTT	.	79.0	46.0	156.0	0.0	.	Atlas-SNP
PROS1	5627	hgsc.bcm.edu	37	3	93617357	93617357	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PROS1-153	NM_000313	exon8	c.G784T	p.G262C	TGTAACCTCCAGG	.	175.0	35.0	171.0	0.0	.	Atlas-SNP
IMPG2	50939	hgsc.bcm.edu	37	3	100948383	100948383	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IMPG2-93	NM_016247	exon17	c.G3474C	p.K1158N	GTTGTACTTCACA	.	93.0	54.0	74.0	0.0	.	Atlas-SNP
MORC1	27136	hgsc.bcm.edu	37	3	108812300	108812300	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MORC1-98	NM_014429	exon8	c.G672T	p.M224I	TCCAGCCATCAGT	.	79.0	12.0	79.0	0.0	.	Atlas-SNP
SLC9C1	285335	hgsc.bcm.edu	37	3	111898522	111898522	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_183061	exon23	c.G2775A	p.G925G	ATCAATCCCTAAA	.	20.0	11.0	23.0	0.0	.	Atlas-SNP
SIDT1	54847	hgsc.bcm.edu	37	3	113304098	113304098	+	Missense_Mutation	SNP	G	G	T	rs199757460	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SIDT1-95	NM_017699	exon9	c.G982T	p.G328W	CTTGTTGGGTTTG	.	101.0	54.0	107.0	0.0	G|1.000;A|0.000	Atlas-SNP
IGSF11	152404	hgsc.bcm.edu	37	3	118621406	118621406	+	Silent	SNP	G	G	T	rs148424020	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IGSF11-90	NM_152538	exon9	c.C1254A	p.V418V	TACCATGACAGGT	.	151.0	15.0	164.0	0.0	G|1.000;A|0.000	Atlas-SNP
LRRC58	116064	hgsc.bcm.edu	37	3	120053716	120053716	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001099678	exon3	c.G900T	p.K300N	TCCACACTTTGGG	.	93.0	12.0	92.0	0.0	.	Atlas-SNP
HGD	3081	hgsc.bcm.edu	37	3	120347254	120347254	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HGD-68	NM_000187	exon14	c.C1311A	p.N437K	CCTGGAGTTGGGA	.	120.0	20.0	118.0	0.0	.	Atlas-SNP
FBXO40	51725	hgsc.bcm.edu	37	3	121340603	121340603	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FBXO40-273	NM_016298	exon3	c.C327T	p.T109T	TGAAACCACCCTT	.	95.0	50.0	72.0	0.0	.	Atlas-SNP
SEMA5B	54437	hgsc.bcm.edu	37	3	122680055	122680055	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SEMA5B-157	NM_001256347	exon2	c.C218A	p.P73H	GTATCAGGCGGCC	.	297.0	159.0	248.0	1.0	.	Atlas-SNP
KALRN	8997	hgsc.bcm.edu	37	3	124017695	124017695	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KALRN-738	NM_003947	exon6	c.G1021C	p.G341R	GAGATCGGAGTCA	.	214.0	107.0	178.0	0.0	.	Atlas-SNP
ALDH1L1	10840	hgsc.bcm.edu	37	3	125869263	125869263	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ALDH1L1-156	NM_001270364	exon8	c.G1000T	p.A334S	CCTCCGCAGTAAC	.	291.0	73.0	261.0	0.0	.	Atlas-SNP
UROC1	131669	hgsc.bcm.edu	37	3	126224620	126224620	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	UROC1-91	NM_144639	exon8	c.C737G	p.T246S	CCAGAGGTGACAA	.	226.0	50.0	159.0	0.0	.	Atlas-SNP
PODXL2	50512	hgsc.bcm.edu	37	3	127387303	127387303	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PODXL2-91	NM_015720	exon5	c.G1226T	p.R409L	AGCACCGGGGGCC	.	270.0	143.0	196.0	1.0	.	Atlas-SNP
TMCC1	23023	hgsc.bcm.edu	37	3	129373858	129373858	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TMCC1-91	NM_001017395	exon5	c.G1600T	p.E534X	TTTCTTCCATGCT	.	105.0	21.0	82.0	0.0	.	Atlas-SNP
TRH	7200	hgsc.bcm.edu	37	3	129695711	129695711	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TRH-91	NM_007117	exon3	c.C381A	p.V127V	GTCAGTCGATGTA	.	188.0	30.0	189.0	0.0	.	Atlas-SNP
TRH	7200	hgsc.bcm.edu	37	3	129695712	129695712	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TRH-91	NM_007117	exon3	c.G382A	p.D128N	TCAGTCGATGTAA	.	190.0	31.0	185.0	0.0	.	Atlas-SNP
PRR23A	729627	hgsc.bcm.edu	37	3	138724701	138724701	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001134659	exon1	c.T410A	p.V137D	TGCTCAACGACGA	.	303.0	153.0	195.0	0.0	.	Atlas-SNP
CLSTN2	64084	hgsc.bcm.edu	37	3	140167391	140167391	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CLSTN2-157	NM_022131	exon6	c.G818T	p.G273V	AGCCTGGCTCCGG	.	196.0	37.0	221.0	0.0	.	Atlas-SNP
CLSTN2	64084	hgsc.bcm.edu	37	3	140265408	140265408	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CLSTN2-157	NM_022131	exon10	c.C1559A	p.A520D	GCCTGGCCAGTCT	.	301.0	172.0	240.0	1.0	.	Atlas-SNP
GK5	256356	hgsc.bcm.edu	37	3	141904794	141904794	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GK5-90	NM_001039547	exon9	c.G793T	p.V265L	TAGGCACACCAAA	.	127.0	12.0	102.0	0.0	.	Atlas-SNP
ATR	545	hgsc.bcm.edu	37	3	142232433	142232433	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ATR-1139	NM_001184	exon26	c.G4551C	p.M1517I	CTTCATCATAATG	.	469.0	88.0	395.0	0.0	.	Atlas-SNP
TRPC1	7220	hgsc.bcm.edu	37	3	142523389	142523389	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TRPC1-92	NM_003304	exon11	c.A1969G	p.I657V	AAGACTATCTGCT	.	263.0	44.0	247.0	0.0	.	Atlas-SNP
CPA3	1359	hgsc.bcm.edu	37	3	148586735	148586735	+	Missense_Mutation	SNP	G	G	T	rs138685459	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CPA3-154	NM_001870	exon3	c.G178T	p.V60L	CACCACGTAGCTG	.	105.0	19.0	69.0	0.0	G|1.000;A|0.000	Atlas-SNP
TM4SF1	4071	hgsc.bcm.edu	37	3	149095253	149095253	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TM4SF1-90	NM_014220	exon1	c.C82A	p.L28I	AGTAAAGCAAAAT	.	241.0	106.0	277.0	1.0	.	Atlas-SNP
TM4SF1	4071	hgsc.bcm.edu	37	3	149095254	149095254	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TM4SF1-90	NM_014220	exon1	c.G81A	p.L27L	GTAAAGCAAAATA	.	240.0	106.0	280.0	0.0	.	Atlas-SNP
P2RY12	64805	hgsc.bcm.edu	37	3	151055969	151055969	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	P2RY12-501	NM_022788	exon3	c.G665C	p.R222T	CTCGTTCTTACGT	.	121.0	19.0	124.0	0.0	.	Atlas-SNP
IGSF10	285313	hgsc.bcm.edu	37	3	151166386	151166386	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IGSF10-102	NM_178822	exon4	c.A1383T	p.P461P	TGCTCTTGGTAAA	.	85.0	49.0	59.0	0.0	.	Atlas-SNP
RAP2B	5912	hgsc.bcm.edu	37	3	152880651	152880651	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RAP2B-847	NM_002886	exon1	c.G169T	p.D57Y	ATCCTGGATACGG	.	341.0	174.0	282.0	0.0	.	Atlas-SNP
GPR149	344758	hgsc.bcm.edu	37	3	154146424	154146424	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPR149-96	NM_001038705	exon1	c.G981T	p.M327I	TTTTACCATCATG	.	341.0	191.0	221.0	1.0	.	Atlas-SNP
MME	4311	hgsc.bcm.edu	37	3	154884770	154884770	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MME-516	NM_000902	exon18	c.G1740T	p.M580I	CGGCATGGTCATA	.	115.0	65.0	144.0	0.0	.	Atlas-SNP
TIPARP	25976	hgsc.bcm.edu	37	3	156413771	156413771	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TIPARP-523	NM_015508	exon4	c.A1204T	p.R402X	AAAAGGAGACCCC	.	79.0	22.0	78.0	0.0	.	Atlas-SNP
OTOL1	131149	hgsc.bcm.edu	37	3	161214847	161214847	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001080440	exon1	c.C252T	p.L84L	CACTCTCTCTCCC	.	179.0	17.0	145.0	0.0	.	Atlas-SNP
SI	6476	hgsc.bcm.edu	37	3	164786984	164786984	+	Splice_Site	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SI-104	NM_001041	exon5	c.256-1G>T	.	AATTCCCTGATAA	.	112.0	17.0	112.0	0.0	.	Atlas-SNP
BCHE	590	hgsc.bcm.edu	37	3	165547305	165547305	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BCHE-94	NM_000055	exon2	c.G1517T	p.G506V	ACTTACCCATATT	.	82.0	13.0	93.0	0.0	.	Atlas-SNP
SERPINI2	5276	hgsc.bcm.edu	37	3	167184843	167184843	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SERPINI2-228	NM_001012303	exon4	c.G508C	p.G170R	CTTTACCATCTGT	.	36.0	4.0	28.0	0.0	.	Atlas-SNP
WDR49	151790	hgsc.bcm.edu	37	3	167218046	167218046	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	WDR49-155	NM_178824	exon14	c.C1870T	p.P624S	CTTCAGGCAGCTC	.	50.0	29.0	59.0	0.0	.	Atlas-SNP
SAMD7	344658	hgsc.bcm.edu	37	3	169644583	169644583	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SAMD7-91	NM_182610	exon6	c.G533T	p.G178V	GCTGGGGGCAGAG	.	215.0	40.0	143.0	0.0	.	Atlas-SNP
TNIK	23043	hgsc.bcm.edu	37	3	170928929	170928929	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TNIK-550	NM_001161565	exon4	c.A282T	p.P94P	GCCTGGTGGGTTC	.	60.0	26.0	79.0	0.0	.	Atlas-SNP
NDUFB5	4711	hgsc.bcm.edu	37	3	179332777	179332777	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NDUFB5-91	NM_001199958	exon2	c.G143T	p.G48V	ACAGTGGAGACCA	.	46.0	11.0	48.0	0.0	.	Atlas-SNP
CCDC39	339829	hgsc.bcm.edu	37	3	180366051	180366051	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CCDC39-72	NM_181426	exon10	c.G1264A	p.E422K	CAATTTCTGATAA	.	68.0	13.0	79.0	0.0	.	Atlas-SNP
CCDC39	339829	hgsc.bcm.edu	37	3	180369189	180369189	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CCDC39-72	NM_181426	exon9	c.G1167A	p.K389K	CTTTACCTTCACA	.	40.0	17.0	32.0	0.0	.	Atlas-SNP
MCF2L2	23101	hgsc.bcm.edu	37	3	183013226	183013226	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MCF2L2-293	NM_015078	exon13	c.C1537A	p.Q513K	TTTCCTGGACATC	.	159.0	29.0	146.0	0.0	.	Atlas-SNP
ABCC5	10057	hgsc.bcm.edu	37	3	183679297	183679297	+	Splice_Site	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ABCC5-137	NM_005688	exon17	c.2379+2T>A	.	GATCTTACCTCAA	.	107.0	53.0	110.0	0.0	.	Atlas-SNP
SENP2	59343	hgsc.bcm.edu	37	3	185337191	185337191	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SENP2-658	NM_021627	exon13	c.G1347T	p.G449G	GTCTGGGGGTTAC	.	89.0	54.0	82.0	0.0	.	Atlas-SNP
FETUB	26998	hgsc.bcm.edu	37	3	186358823	186358823	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FETUB-92	NM_014375	exon2	c.G230T	p.G77V	AGGGTGGCCTGGG	.	68.0	4.0	57.0	0.0	.	Atlas-SNP
HRG	3273	hgsc.bcm.edu	37	3	186389494	186389494	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HRG-91	NM_000412	exon4	c.C474A	p.A158A	ACAAGCCAACAAA	.	263.0	130.0	219.0	1.0	.	Atlas-SNP
CCDC50	152137	hgsc.bcm.edu	37	3	191107354	191107354	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CCDC50-90	NM_174908	exon10	c.C864T	p.S288S	GAGTTCCACACGG	.	138.0	52.0	126.0	0.0	.	Atlas-SNP
OPA1	4976	hgsc.bcm.edu	37	3	193376763	193376763	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OPA1-68	NM_130832	exon22	c.C2200T	p.L734L	GAGGCTCTGCAGG	.	108.0	20.0	89.0	0.0	.	Atlas-SNP
LRRC15	131578	hgsc.bcm.edu	37	3	194080771	194080771	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LRRC15-71	NM_130830	exon2	c.G1002T	p.P334P	GGCACCCGGGGAG	.	183.0	28.0	158.0	0.0	.	Atlas-SNP
KIAA0226	9711	hgsc.bcm.edu	37	3	197402298	197402298	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIAA0226-22	NM_014687	exon19	c.G2735T	p.C912F	CCTTCACAGGTCC	.	65.0	31.0	61.0	0.0	.	Atlas-SNP
KIAA0226	9711	hgsc.bcm.edu	37	3	197420601	197420601	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIAA0226-22	NM_014687	exon11	c.G1771A	p.E591K	CAAATTCATCAAC	.	86.0	20.0	85.0	0.0	.	Atlas-SNP
SHOX2	6474	hgsc.bcm.edu	37	3	157823581	157823582	+	In_Frame_Ins	INS	-	-	CACCTCCTC	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SHOX2-90	NM_003030	exon1	c.233_234insGAGGAGGTG	p.V78delinsGGGV	.	.	87.0	37.0	18.0	0.0	.	Atlas-Indel
KCNMB2	10242	hgsc.bcm.edu	37	3	178543454	178543454	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KCNMB2-91	NM_181361	exon3	c.134delA	p.D45fs	.	.	197.0	60.0	196.0	0.0	.	Pindel
UVSSA	57654	hgsc.bcm.edu	37	4	1373968	1373968	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_020894	exon11	c.C1702T	p.R568C	TGGTGCCGTGCCC	.	289.0	122.0	177.0	0.0	.	Atlas-SNP
MSX1	4487	hgsc.bcm.edu	37	4	4862088	4862088	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MSX1-90	NM_002448	exon1	c.G462A	p.P154P	CCCGCCGCCGGCC	.	24.0	14.0	6.0	0.0	.	Atlas-SNP
EVC	2121	hgsc.bcm.edu	37	4	5749913	5749913	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EVC-92	NM_153717	exon8	c.C978G	p.H326Q	CCAGCACTTTCTT	.	98.0	51.0	103.0	0.0	.	Atlas-SNP
BOD1L1	259282	hgsc.bcm.edu	37	4	13615256	13615256	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_148894	exon5	c.G1204T	p.G402X	TAAGTCCATCCAC	.	98.0	24.0	155.0	0.0	.	Atlas-SNP
CC2D2A	57545	hgsc.bcm.edu	37	4	15512967	15512967	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CC2D2A-25	NM_001080522	exon9	c.G638C	p.R213T	AAGCAAGACATAG	.	112.0	28.0	97.0	0.0	.	Atlas-SNP
DCAF16	54876	hgsc.bcm.edu	37	4	17805608	17805608	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DCAF16-91	NM_017741	exon3	c.G157T	p.A53S	GCCAGGCAAGACT	.	77.0	8.0	101.0	0.0	.	Atlas-SNP
SLIT2	9353	hgsc.bcm.edu	37	4	20530599	20530599	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLIT2-521	NM_004787	exon16	c.G1490T	p.S497I	AATTAAGTGGAGA	.	42.0	5.0	61.0	0.0	.	Atlas-SNP
SLIT2	9353	hgsc.bcm.edu	37	4	20543086	20543086	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLIT2-521	NM_004787	exon20	c.G1987C	p.A663P	CTCTTGGCCAATC	.	128.0	58.0	142.0	0.0	.	Atlas-SNP
SLIT2	9353	hgsc.bcm.edu	37	4	20550717	20550717	+	Missense_Mutation	SNP	C	C	G	rs143383158	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLIT2-521	NM_004787	exon24	c.C2455G	p.R819G	CCTCCTCGCACCT	.	79.0	31.0	56.0	0.0	C|1.000;T|0.000	Atlas-SNP
PACRGL	133015	hgsc.bcm.edu	37	4	20711305	20711305	+	Splice_Site	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PACRGL-68	NM_001258345	exon5	c.276-1G>C	.	ATTTTAGATTGGT	.	28.0	15.0	46.0	0.0	.	Atlas-SNP
PPARGC1A	10891	hgsc.bcm.edu	37	4	23815899	23815899	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PPARGC1A-230	NM_013261	exon8	c.G1207C	p.E403Q	GGAGCTCCTGTGA	.	45.0	19.0	40.0	0.0	.	Atlas-SNP
STIM2	57620	hgsc.bcm.edu	37	4	26997095	26997095	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	STIM2-91	NM_001169117	exon4	c.A492T	p.K164N	TGTCAAAGGAACG	.	57.0	20.0	71.0	0.0	.	Atlas-SNP
PCDH7	5099	hgsc.bcm.edu	37	4	30725203	30725203	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDH7-229	NM_032456	exon1	c.C2159A	p.P720H	GAGATCCTCCCAG	.	167.0	42.0	200.0	0.0	.	Atlas-SNP
PCDH7	5099	hgsc.bcm.edu	37	4	30726108	30726108	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDH7-229	NM_032456	exon1	c.C3064A	p.Q1022K	GCCGTACAAGATC	.	122.0	41.0	145.0	0.0	.	Atlas-SNP
ARAP2	116984	hgsc.bcm.edu	37	4	36214095	36214095	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ARAP2-93	NM_015230	exon5	c.G1056T	p.K352N	TTCATTCTTTATA	.	28.0	9.0	51.0	0.0	.	Atlas-SNP
CHRNA9	55584	hgsc.bcm.edu	37	4	40337897	40337897	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CHRNA9-96	NM_017581	exon2	c.G118C	p.E40Q	CTTTTTGAAGATT	.	162.0	41.0	167.0	0.0	.	Atlas-SNP
DCAF4L1	285429	hgsc.bcm.edu	37	4	41984385	41984385	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DCAF4L1-23	NM_001029955	exon1	c.C576G	p.L192L	GTCCCTCAACACC	.	209.0	19.0	270.0	0.0	.	Atlas-SNP
GRXCR1	389207	hgsc.bcm.edu	37	4	42895306	42895306	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GRXCR1-23	NM_001080476	exon1	c.C23A	p.P8Q	TGAAGCCAGAAAG	.	242.0	43.0	254.0	0.0	.	Atlas-SNP
KCTD8	386617	hgsc.bcm.edu	37	4	44177094	44177094	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KCTD8-92	NM_198353	exon2	c.G1135T	p.A379S	CTGTTGCCTGCTG	.	108.0	32.0	121.0	0.0	.	Atlas-SNP
GABRG1	2565	hgsc.bcm.edu	37	4	46060307	46060307	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GABRG1-92	NM_173536	exon7	c.C843A	p.C281X	CAGAATGCATGGA	.	177.0	60.0	189.0	0.0	.	Atlas-SNP
SGCB	6443	hgsc.bcm.edu	37	4	52895076	52895076	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SGCB-90	NM_000232	exon4	c.G441T	p.Q147H	CCCTTGCTGAAAA	.	45.0	15.0	42.0	0.0	.	Atlas-SNP
SPATA18	132671	hgsc.bcm.edu	37	4	52944930	52944930	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SPATA18-72	NM_145263	exon8	c.C1050A	p.F350L	GGCATTCAGACAC	.	105.0	27.0	101.0	0.0	.	Atlas-SNP
EXOC1	55763	hgsc.bcm.edu	37	4	56763013	56763013	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EXOC1-950	NM_001024924	exon16	c.G2084T	p.R695L	AGCGTCGTGGAGA	.	79.0	29.0	101.0	0.0	.	Atlas-SNP
TECRL	253017	hgsc.bcm.edu	37	4	65180421	65180421	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TECRL-90	NM_001010874	exon5	c.C496A	p.P166T	TACATGGGATCCT	.	302.0	124.0	365.0	1.0	.	Atlas-SNP
EPHA5	2044	hgsc.bcm.edu	37	4	66467370	66467370	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EPHA5-1430	NM_004439	exon3	c.G899T	p.G300V	CAGGTGCCATTTT	.	67.0	30.0	60.0	0.0	.	Atlas-SNP
UBA6	55236	hgsc.bcm.edu	37	4	68492095	68492095	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	UBA6-90	NM_018227	exon28	c.C2501T	p.S834F	TCATTAGATAAAA	.	29.0	6.0	32.0	0.0	.	Atlas-SNP
TMPRSS11E	28983	hgsc.bcm.edu	37	4	69343119	69343119	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TMPRSS11E-70	NM_014058	exon8	c.T740A	p.F247Y	CTTCCTTTGGAGT	.	199.0	80.0	193.0	0.0	.	Atlas-SNP
UGT2A3	79799	hgsc.bcm.edu	37	4	69795545	69795545	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	UGT2A3-92	NM_024743	exon6	c.G1570C	p.E524Q	TCTTTTCTATCTT	.	57.0	25.0	87.0	0.0	.	Atlas-SNP
HTN1	3346	hgsc.bcm.edu	37	4	70920167	70920167	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HTN1-91	NM_002159	exon4	c.T102C	p.H34H	ATTCCATGTAAGT	.	108.0	18.0	142.0	0.0	.	Atlas-SNP
MUC7	4589	hgsc.bcm.edu	37	4	71346966	71346966	+	Missense_Mutation	SNP	C	C	A	rs41413151	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MUC7-93	NM_152291	exon3	c.C505A	p.P169T	GCTGCCCCACCCA	.	254.0	126.0	277.0	1.0	C|0.987;A|0.013	Atlas-SNP
GC	2638	hgsc.bcm.edu	37	4	72622606	72622606	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GC-93	NM_001204306	exon9	c.G857A	p.C286Y	TTGTCACAGAGTT	.	34.0	16.0	40.0	0.0	.	Atlas-SNP
CCDC158	339965	hgsc.bcm.edu	37	4	77244563	77244563	+	Splice_Site	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CCDC158-96	NM_001042784	exon24	c.3158-1G>T	.	GTGAATCTATTAG	.	40.0	9.0	47.0	0.0	.	Atlas-SNP
CNOT6L	246175	hgsc.bcm.edu	37	4	78641630	78641630	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CNOT6L-67	NM_144571	exon12	c.A1623G	p.P541P	CAGGAGTGGAGGG	.	754.0	181.0	816.0	1.0	.	Atlas-SNP
FGF5	2250	hgsc.bcm.edu	37	4	81207738	81207738	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FGF5-1135	NM_004464	exon3	c.C719A	p.P240H	AGCCACCTAGCCC	.	102.0	20.0	106.0	0.0	.	Atlas-SNP
PRKG2	5593	hgsc.bcm.edu	37	4	82090866	82090866	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PRKG2-524	NM_006259	exon4	c.A799T	p.R267W	TCCTCCTCATTAT	.	52.0	12.0	43.0	0.0	.	Atlas-SNP
PRKG2	5593	hgsc.bcm.edu	37	4	82125944	82125944	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PRKG2-524	NM_006259	exon1	c.G258T	p.V86V	CATATGCACCACA	.	137.0	55.0	143.0	0.0	.	Atlas-SNP
WDFY3	23001	hgsc.bcm.edu	37	4	85626662	85626662	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	WDFY3-93	NM_014991	exon54	c.G8220T	p.E2740D	ATCCACCTCCTAA	.	103.0	40.0	108.0	0.0	.	Atlas-SNP
SLC10A6	345274	hgsc.bcm.edu	37	4	87769948	87769948	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC10A6-22	NM_197965	exon1	c.G321T	p.P107P	GCCCCCCGGGCAG	.	176.0	85.0	145.0	0.0	.	Atlas-SNP
HERC3	8916	hgsc.bcm.edu	37	4	89607931	89607931	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HERC3-660	NM_001271602	exon21	c.A2198C	p.E733A	TGGAGGAGACTTT	.	112.0	34.0	115.0	0.0	.	Atlas-SNP
MMRN1	22915	hgsc.bcm.edu	37	4	90857026	90857026	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MMRN1-94	NM_007351	exon6	c.T2195G	p.M732R	AGACAATGACTAT	.	130.0	35.0	184.0	0.0	.	Atlas-SNP
MMRN1	22915	hgsc.bcm.edu	37	4	90857213	90857213	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MMRN1-94	NM_007351	exon6	c.G2382T	p.Q794H	CAATCAGAGATAT	.	50.0	18.0	69.0	0.0	.	Atlas-SNP
PDLIM5	10611	hgsc.bcm.edu	37	4	95497186	95497186	+	Splice_Site	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PDLIM5-117	NM_006457	exon5	c.710+1G>T	.	AAATGGGTAGGTG	.	172.0	59.0	179.0	0.0	.	Atlas-SNP
BMPR1B	658	hgsc.bcm.edu	37	4	96075737	96075737	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BMPR1B-1378	NM_001256792	exon11	c.G1422T	p.W474C	ATGCTGGGCTCAC	.	168.0	44.0	140.0	0.0	.	Atlas-SNP
ADH1B	125	hgsc.bcm.edu	37	4	100235236	100235236	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADH1B-136	NM_000668	exon6	c.C570T	p.V190V	TGGGGTGACCTGT	.	155.0	72.0	186.0	0.0	.	Atlas-SNP
ADH1B	125	hgsc.bcm.edu	37	4	100237112	100237112	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADH1B-136	NM_000668	exon5	c.C510A	p.V170V	GAGGCAGACTTTC	.	262.0	72.0	276.0	0.0	.	Atlas-SNP
NFKB1	4790	hgsc.bcm.edu	37	4	103537720	103537720	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NFKB1-912	NM_001165412	exon24	c.G2876T	p.G959V	ATTATGGGCAGGA	.	86.0	52.0	97.0	0.0	.	Atlas-SNP
MANBA	4126	hgsc.bcm.edu	37	4	103557078	103557078	+	Missense_Mutation	SNP	T	T	C	rs113843904		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MANBA-91	NM_005908	exon15	c.A2101G	p.T701A	AGAACGTGTTTTC	.	135.0	28.0	159.0	0.0	T|0.500;C|0.500	Atlas-SNP
CENPE	1062	hgsc.bcm.edu	37	4	104032111	104032111	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CENPE-277	NM_001813	exon47	c.G7598T	p.G2533V	CCGCTGCCACCTC	.	49.0	24.0	69.0	0.0	.	Atlas-SNP
CENPE	1062	hgsc.bcm.edu	37	4	104066245	104066245	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CENPE-277	NM_001813	exon32	c.G4819T	p.D1607Y	GTTGGTCTCTCTC	.	33.0	13.0	37.0	0.0	.	Atlas-SNP
CENPE	1062	hgsc.bcm.edu	37	4	104080288	104080288	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CENPE-277	NM_001813	exon22	c.T2480A	p.M827K	AAGTCCATATGAA	.	61.0	30.0	95.0	0.0	.	Atlas-SNP
CENPE	1062	hgsc.bcm.edu	37	4	104102532	104102532	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CENPE-277	NM_001813	exon12	c.A1045T	p.R349X	CTTTTCTATACCT	.	193.0	58.0	214.0	0.0	.	Atlas-SNP
DKK2	27123	hgsc.bcm.edu	37	4	107956686	107956686	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DKK2-661	NM_014421	exon1	c.G63T	p.L21L	CACCATCAGCACC	.	121.0	47.0	140.0	0.0	.	Atlas-SNP
PITX2	5308	hgsc.bcm.edu	37	4	111539439	111539439	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PITX2-650	NM_001204397	exon7	c.C796G	p.P266A	TCGGCGGCGCGTA	.	257.0	151.0	218.0	0.0	.	Atlas-SNP
ANK2	287	hgsc.bcm.edu	37	4	114279073	114279073	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ANK2-583	NM_001148	exon38	c.C9299G	p.P3100R	AAAACCCATTTCT	.	110.0	73.0	86.0	0.0	.	Atlas-SNP
ANK2	287	hgsc.bcm.edu	37	4	114294594	114294594	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ANK2-583	NM_020977	exon44	c.G5593A	p.E1865K	GACACCGAGCAGT	.	427.0	250.0	308.0	0.0	.	Atlas-SNP
UGT8	7368	hgsc.bcm.edu	37	4	115544819	115544819	+	Silent	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	UGT8-92	NM_001128174	exon2	c.A783T	p.V261V	TTATGTAGGAGGA	.	163.0	91.0	126.0	0.0	.	Atlas-SNP
NDST4	64579	hgsc.bcm.edu	37	4	115773935	115773935	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NDST4-94	NM_022569	exon8	c.G1762T	p.E588X	TTTTCTCTCTGGA	.	112.0	69.0	108.0	0.0	.	Atlas-SNP
SYNPO2	171024	hgsc.bcm.edu	37	4	119978893	119978893	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SYNPO2-92	NM_133477	exon5	c.A3590T	p.Q1197L	GAAGGCAAGAGTA	.	490.0	66.0	328.0	0.0	.	Atlas-SNP
ANKRD50	57182	hgsc.bcm.edu	37	4	125591276	125591276	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ANKRD50-90	NM_001167882	exon3	c.A2619T	p.A873A	CTGGGCTGCAATA	.	498.0	320.0	348.0	0.0	.	Atlas-SNP
ANKRD50	57182	hgsc.bcm.edu	37	4	125592669	125592669	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ANKRD50-90	NM_001167882	exon3	c.A1226C	p.Q409P	TGTCCCTGTCTAG	.	152.0	13.0	105.0	0.0	.	Atlas-SNP
FAT4	79633	hgsc.bcm.edu	37	4	126370695	126370695	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAT4-108	NM_024582	exon9	c.A8524T	p.R2842X	CGTTACAGAATTC	.	124.0	18.0	92.0	0.0	.	Atlas-SNP
FAT4	79633	hgsc.bcm.edu	37	4	126372220	126372220	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAT4-108	NM_024582	exon9	c.A10049T	p.K3350M	TCAATAAGAAGAC	.	141.0	84.0	107.0	0.0	.	Atlas-SNP
PCDH10	57575	hgsc.bcm.edu	37	4	134071578	134071578	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDH10-92	NM_032961	exon1	c.C283A	p.L95M	CTGCACCTGGAGG	.	65.0	16.0	140.0	0.0	.	Atlas-SNP
PCDH10	57575	hgsc.bcm.edu	37	4	134071922	134071922	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDH10-92	NM_032961	exon1	c.G627A	p.G209G	AGGTGGGGGAGGA	.	77.0	27.0	70.0	0.0	.	Atlas-SNP
PCDH10	57575	hgsc.bcm.edu	37	4	134073851	134073851	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDH10-92	NM_032961	exon1	c.C2556A	p.P852P	CAACCCCTGCGGG	.	160.0	60.0	256.0	0.0	.	Atlas-SNP
PCDH18	54510	hgsc.bcm.edu	37	4	138451929	138451929	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDH18-185	NM_019035	exon1	c.G1314T	p.E438D	CCTGTCCTCAGCG	.	29.0	5.0	65.0	0.0	.	Atlas-SNP
GAB1	2549	hgsc.bcm.edu	37	4	144359748	144359748	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GAB1-1146	NM_207123	exon4	c.G1190C	p.R397P	AATTGCGAAAAGG	.	44.0	11.0	71.0	0.0	.	Atlas-SNP
MMAA	166785	hgsc.bcm.edu	37	4	146563573	146563573	+	Missense_Mutation	SNP	G	G	T	rs186933110	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MMAA-91	NM_172250	exon3	c.G498T	p.M166I	AAAAATGCTTACT	.	71.0	13.0	102.0	0.0	G|0.999;A|0.000	Atlas-SNP
ARHGAP10	79658	hgsc.bcm.edu	37	4	148968042	148968042	+	Splice_Site	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ARHGAP10-229	NM_024605	exon20	c.1868-1G>T	.	CTCCTAGGTGACA	.	25.0	9.0	40.0	0.0	.	Atlas-SNP
SFRP2	6423	hgsc.bcm.edu	37	4	154709637	154709637	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SFRP2-659	NM_003013	exon1	c.C351A	p.L117L	CACGCAGAGCGAG	.	200.0	48.0	255.0	0.0	.	Atlas-SNP
DCHS2	54798	hgsc.bcm.edu	37	4	155156608	155156608	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DCHS2-94	NM_017639	exon25	c.G7831A	p.D2611N	TGGCATCCACAGG	.	64.0	20.0	129.0	0.0	.	Atlas-SNP
DCHS2	54798	hgsc.bcm.edu	37	4	155241704	155241704	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DCHS2-94	NM_017639	exon14	c.A3482T	p.H1161L	GGGTTGTGGTCAT	.	190.0	60.0	279.0	0.0	.	Atlas-SNP
GRIA2	2891	hgsc.bcm.edu	37	4	158224710	158224710	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GRIA2-515	NM_001083620	exon3	c.C95A	p.S32Y	TCTGCTCCCAGTT	.	49.0	8.0	68.0	0.0	.	Atlas-SNP
FAM198B	51313	hgsc.bcm.edu	37	4	159092012	159092012	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM198B-90	NM_001128424	exon2	c.G516C	p.L172L	CTTAACCAGGTTT	.	91.0	24.0	134.0	0.0	.	Atlas-SNP
TMEM144	55314	hgsc.bcm.edu	37	4	159162724	159162724	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TMEM144-90	NM_018342	exon11	c.T866A	p.L289Q	ACTCTCTGAGTGC	.	35.0	10.0	55.0	0.0	.	Atlas-SNP
RXFP1	59350	hgsc.bcm.edu	37	4	159573178	159573178	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RXFP1-91	NM_001253727	exon18	c.C2326A	p.Q776K	ATTTCTCAATCAA	.	46.0	9.0	67.0	0.0	.	Atlas-SNP
NPY1R	4886	hgsc.bcm.edu	37	4	164247178	164247178	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NPY1R-523	NM_000909	exon2	c.C529A	p.Q177K	TTACTTGGTAGAT	.	124.0	26.0	199.0	0.0	.	Atlas-SNP
TKTL2	84076	hgsc.bcm.edu	37	4	164393463	164393463	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TKTL2-95	NM_032136	exon1	c.G1424T	p.R475L	CTGGTTCGAATGA	.	86.0	25.0	130.0	0.0	.	Atlas-SNP
TLL1	7092	hgsc.bcm.edu	37	4	166960572	166960572	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TLL1-158	NM_012464	exon10	c.T1240A	p.W414R	GGGTACTGGAGAA	.	63.0	13.0	100.0	0.0	.	Atlas-SNP
TLL1	7092	hgsc.bcm.edu	37	4	167020586	167020586	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TLL1-158	NM_012464	exon20	c.G2814T	p.V938V	TGAAGTGGAGGAA	.	172.0	55.0	289.0	0.0	.	Atlas-SNP
DDX60L	91351	hgsc.bcm.edu	37	4	169383010	169383010	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DDX60L-69	NM_001012967	exon5	c.G446T	p.G149V	CTCAGGCCTTCCT	.	87.0	23.0	86.0	0.0	.	Atlas-SNP
NEK1	4750	hgsc.bcm.edu	37	4	170506532	170506532	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NEK1-361	NM_001199400	exon9	c.G775T	p.A259S	GTTTGGCTATAAA	.	90.0	17.0	126.0	0.0	.	Atlas-SNP
GALNTL6	442117	hgsc.bcm.edu	37	4	173734869	173734869	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GALNTL6-137	NM_001034845	exon7	c.T918C	p.P306P	CGACCCTTTTGAG	.	73.0	23.0	84.0	0.0	.	Atlas-SNP
WDR17	116966	hgsc.bcm.edu	37	4	177098263	177098263	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	WDR17-95	NM_181265	exon27	c.T3504A	p.S1168S	TCTTTCTGAGGAA	.	49.0	14.0	58.0	0.0	.	Atlas-SNP
MTNR1A	4543	hgsc.bcm.edu	37	4	187455197	187455197	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MTNR1A-524	NM_005958	exon2	c.C699A	p.D233E	CCTGAAGTCCTGT	.	219.0	62.0	230.0	0.0	.	Atlas-SNP
MTNR1A	4543	hgsc.bcm.edu	37	4	187455239	187455239	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MTNR1A-524	NM_005958	exon2	c.G657T	p.Q219H	CACCCTCTGTCTG	.	236.0	73.0	253.0	0.0	.	Atlas-SNP
FAT1	2195	hgsc.bcm.edu	37	4	187539244	187539244	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAT1-34	NM_005245	exon10	c.G8496T	p.R2832S	AGATGCCCTGATC	.	64.0	12.0	112.0	0.0	.	Atlas-SNP
FAT1	2195	hgsc.bcm.edu	37	4	187539245	187539245	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAT1-34	NM_005245	exon10	c.G8495T	p.R2832M	GATGCCCTGATCT	.	64.0	12.0	114.0	0.0	.	Atlas-SNP
TRIML1	339976	hgsc.bcm.edu	37	4	189068073	189068073	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TRIML1-156	NM_178556	exon6	c.C954A	p.P318P	GCTACCCGACAAC	.	179.0	57.0	197.0	0.0	.	Atlas-SNP
MSX1	4487	hgsc.bcm.edu	37	4	4862086	4862086	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MSX1-90	NM_002448	exon1	c.459delG	p.P153fs	.	.	25.0	15.0	6.0	0.0	.	Atlas-Indel
POLR2B	5431	hgsc.bcm.edu	37	4	57889607	57889609	+	In_Frame_Del	DEL	ATG	ATG	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	ATG	ATG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	POLR2B-92	NM_000938	exon19	c.2626_2628del	p.876_876del	.	.	146.0	63.0	155.0	0.0	.	Atlas-Indel
WDFY3	23001	hgsc.bcm.edu	37	4	85722990	85722991	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	WDFY3-93	NM_014991	exon17	c.2635_2636insT	p.A879fs	.	.	114.0	26.0	128.0	0.0	.	Atlas-Indel
MSX1	4487	hgsc.bcm.edu	37	4	4862087	4862088	+	Frame_Shift_Del	DEL	CG	CG	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	CG	CG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MSX1-90	NM_002448	exon1	c.460_461del	p.154_154del	.	.	25.0	10.0	6.0	0.0	.	Pindel
KIAA0947	23379	hgsc.bcm.edu	37	5	5457693	5457693	+	Missense_Mutation	SNP	G	G	T	rs76783275	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIAA0947-48	NM_015325	exon12	c.G940T	p.G314C	CGTGACGGTGGTA	.	185.0	61.0	193.0	0.0	G|0.986;A|0.014	Atlas-SNP
KIAA0947	23379	hgsc.bcm.edu	37	5	5460966	5460966	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIAA0947-48	NM_015325	exon13	c.G1519T	p.G507C	ACTCGAGGTCTAT	.	216.0	78.0	211.0	0.0	.	Atlas-SNP
KIAA0947	23379	hgsc.bcm.edu	37	5	5462358	5462358	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIAA0947-48	NM_015325	exon13	c.A2911T	p.I971F	CAAGACATTGTGA	.	86.0	32.0	81.0	0.0	.	Atlas-SNP
KIAA0947	23379	hgsc.bcm.edu	37	5	5466585	5466585	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIAA0947-48	NM_015325	exon14	c.C6031G	p.R2011G	AGAGCTCGTTTGT	.	105.0	13.0	125.0	0.0	.	Atlas-SNP
SEMA5A	9037	hgsc.bcm.edu	37	5	9154783	9154783	+	Missense_Mutation	SNP	C	C	A	rs138343991	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SEMA5A-91	NM_003966	exon12	c.G1298T	p.R433L	GGTACCCGCACTT	.	377.0	106.0	272.0	0.0	C|0.999;T|0.000	Atlas-SNP
CTNND2	1501	hgsc.bcm.edu	37	5	11364815	11364815	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CTNND2-293	NM_001332	exon8	c.G1365C	p.T455T	TGTGCTCGTGCGG	.	61.0	30.0	73.0	0.0	.	Atlas-SNP
DNAH5	1767	hgsc.bcm.edu	37	5	13753344	13753344	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DNAH5-182	NM_001369	exon63	c.C10870T	p.Q3624X	TTACCTGGAGTTC	.	67.0	19.0	59.0	0.0	.	Atlas-SNP
DNAH5	1767	hgsc.bcm.edu	37	5	13841987	13841987	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DNAH5-182	NM_001369	exon33	c.C5298G	p.S1766S	TTGAGAGGAAATT	.	62.0	24.0	67.0	0.0	.	Atlas-SNP
FBXL7	23194	hgsc.bcm.edu	37	5	15928111	15928111	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FBXL7-228	NM_012304	exon3	c.C240A	p.I80I	CTCCATCACCGGG	.	115.0	40.0	87.0	0.0	.	Atlas-SNP
FBXL7	23194	hgsc.bcm.edu	37	5	15928344	15928344	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FBXL7-228	NM_012304	exon3	c.G473T	p.R158L	CTATCCGCCTGAC	.	148.0	50.0	75.0	0.0	.	Atlas-SNP
CDH18	1016	hgsc.bcm.edu	37	5	19473645	19473645	+	Missense_Mutation	SNP	C	C	A	rs140353037	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CDH18-159	NM_004934	exon13	c.G2063T	p.R688L	TCCCTCCGGTACT	.	157.0	59.0	176.0	0.0	C|1.000;T|0.000	Atlas-SNP
CDH12	1010	hgsc.bcm.edu	37	5	21783535	21783535	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CDH12-92	NM_004061	exon11	c.C1325A	p.A442D	TTAGTGGCGATGG	.	95.0	32.0	88.0	0.0	.	Atlas-SNP
CDH12	1010	hgsc.bcm.edu	37	5	21854885	21854885	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CDH12-92	NM_004061	exon7	c.C541T	p.Q181X	TGACCTGGAGTAC	.	172.0	58.0	173.0	0.0	.	Atlas-SNP
PRDM9	56979	hgsc.bcm.edu	37	5	23524575	23524575	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PRDM9-139	NM_020227	exon10	c.C1083A	p.Y361X	TGAATACGGCCAG	.	255.0	92.0	225.0	0.0	.	Atlas-SNP
PRDM9	56979	hgsc.bcm.edu	37	5	23526532	23526532	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PRDM9-139	NM_020227	exon11	c.C1335A	p.H445Q	TCCACACAGCCGT	.	113.0	35.0	101.0	0.0	.	Atlas-SNP
PRDM9	56979	hgsc.bcm.edu	37	5	23527437	23527437	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PRDM9-139	NM_020227	exon11	c.C2240A	p.P747H	AGAAGCCCTATGT	.	402.0	128.0	396.0	0.0	.	Atlas-SNP
ADAMTS12	81792	hgsc.bcm.edu	37	5	33576158	33576158	+	Splice_Site	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADAMTS12-232	NM_030955	exon20	c.3972+1G>T	.	GTCTTACCTCGCT	.	95.0	36.0	88.0	0.0	.	Atlas-SNP
ADAMTS12	81792	hgsc.bcm.edu	37	5	33576501	33576501	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADAMTS12-232	NM_030955	exon19	c.G3630A	p.W1210X	GGGTGGCCACCAG	.	210.0	81.0	164.0	0.0	.	Atlas-SNP
ADAMTS12	81792	hgsc.bcm.edu	37	5	33658359	33658359	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADAMTS12-232	NM_030955	exon7	c.C1120A	p.R374S	AACTGCGGTGAGG	.	224.0	80.0	194.0	0.0	.	Atlas-SNP
RXFP3	51289	hgsc.bcm.edu	37	5	33938186	33938186	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RXFP3-91	NM_016568	exon1	c.C1341T	p.Y447Y	GCTCTACTACCCA	.	78.0	28.0	8.0	0.0	.	Atlas-SNP
UGT3A1	133688	hgsc.bcm.edu	37	5	35968210	35968210	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	UGT3A1-92	NM_152404	exon3	c.C222G	p.Y74X	AACTTGGTATGAT	.	67.0	25.0	57.0	0.0	.	Atlas-SNP
OSMR	9180	hgsc.bcm.edu	37	5	38881777	38881777	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OSMR-496	NM_001168355	exon4	c.A329T	p.H110L	CCACACACTTTGT	.	111.0	46.0	113.0	0.0	.	Atlas-SNP
C9	735	hgsc.bcm.edu	37	5	39308382	39308382	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	C9-90	NM_001737	exon8	c.G1190T	p.G397V	TCAGCTCCAACAG	.	223.0	77.0	203.0	0.0	.	Atlas-SNP
PTGER4	5734	hgsc.bcm.edu	37	5	40692043	40692043	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PTGER4-658	NM_000958	exon3	c.A1030T	p.I344F	GAGAAGATCAAAT	.	167.0	61.0	150.0	0.0	.	Atlas-SNP
HCN1	348980	hgsc.bcm.edu	37	5	45262200	45262200	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HCN1-91	NM_021072	exon8	c.G2496T	p.R832S	AGTGCTCCTGCCC	.	70.0	25.0	44.0	0.0	.	Atlas-SNP
HCN1	348980	hgsc.bcm.edu	37	5	45262201	45262201	+	Missense_Mutation	SNP	C	C	A	rs199887416	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HCN1-91	NM_021072	exon8	c.G2495T	p.R832M	GTGCTCCTGCCCC	.	72.0	27.0	45.0	0.0	C|0.999;G|0.000	Atlas-SNP
HCN1	348980	hgsc.bcm.edu	37	5	45353216	45353216	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HCN1-91	NM_021072	exon5	c.G1363T	p.D455Y	GAGGATCATTGAG	.	62.0	23.0	59.0	0.0	.	Atlas-SNP
ITGA2	3673	hgsc.bcm.edu	37	5	52368469	52368469	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ITGA2-226	NM_002203	exon19	c.G2373T	p.E791D	TGGTGAGGACGGA	.	50.0	10.0	63.0	0.0	.	Atlas-SNP
GPX8	493869	hgsc.bcm.edu	37	5	54457048	54457048	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPX8-68	NM_001008397	exon2	c.G431T	p.G144V	TTCTAGGATCTGA	.	36.0	9.0	44.0	0.0	.	Atlas-SNP
ACTBL2	345651	hgsc.bcm.edu	37	5	56778494	56778494	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ACTBL2-25	NM_001017992	exon1	c.G41A	p.G14E	CCTGACCCATTAT	.	160.0	72.0	179.0	0.0	.	Atlas-SNP
LRRC70	100130733	hgsc.bcm.edu	37	5	61876613	61876613	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_181506	exon2	c.G1348A	p.E450K	GAGACTGAGAACA	.	92.0	38.0	105.0	0.0	.	Atlas-SNP
ADAMTS6	11174	hgsc.bcm.edu	37	5	64747376	64747376	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADAMTS6-226	NM_197941	exon7	c.C999G	p.L333L	GTGGGAGAGAATG	.	248.0	26.0	196.0	0.0	.	Atlas-SNP
ADAMTS6	11174	hgsc.bcm.edu	37	5	64755998	64755998	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADAMTS6-226	NM_197941	exon4	c.G630T	p.S210S	CTCACCCGAAACC	.	81.0	21.0	76.0	0.0	.	Atlas-SNP
F2RL1	2150	hgsc.bcm.edu	37	5	76129178	76129178	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	F2RL1-226	NM_005242	exon2	c.G746T	p.G249V	CCATTGGGGTCTT	.	159.0	37.0	166.0	0.0	.	Atlas-SNP
S100Z	170591	hgsc.bcm.edu	37	5	76173537	76173537	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	S100Z-91	NM_130772	exon4	c.G180T	p.Q60H	AGTGCAGGACCTG	.	153.0	28.0	179.0	0.0	.	Atlas-SNP
PAPD4	167153	hgsc.bcm.edu	37	5	78944447	78944447	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PAPD4-69	NM_001114394	exon9	c.G829T	p.E277X	TGTGTGGAGTTTG	.	99.0	18.0	137.0	0.0	.	Atlas-SNP
CMYA5	202333	hgsc.bcm.edu	37	5	79025201	79025201	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CMYA5-77	NM_153610	exon2	c.A613G	p.T205A	CCGATTACTGGGG	.	160.0	23.0	195.0	0.0	.	Atlas-SNP
VCAN	1462	hgsc.bcm.edu	37	5	82785935	82785935	+	Missense_Mutation	SNP	C	C	A	rs202176395	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	VCAN-238	NM_001164097	exon3	c.C89A	p.P30Q	AAAGCCCACCGGT	.	45.0	12.0	47.0	0.0	C|0.999;T|0.001	Atlas-SNP
MEF2C	4208	hgsc.bcm.edu	37	5	88047710	88047710	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MEF2C-704	NM_001193350	exon5	c.G553C	p.G185R	TTACACCAGGAGA	.	191.0	44.0	211.0	0.0	.	Atlas-SNP
POU5F2	134187	hgsc.bcm.edu	37	5	93077153	93077153	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_153216	exon1	c.G117T	p.A39A	AGGGGCCGCCTGG	.	145.0	68.0	102.0	0.0	.	Atlas-SNP
KIAA0825	285600	hgsc.bcm.edu	37	5	93805738	93805738	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIAA0825-91	NM_001145678	exon10	c.C1800T	p.V600V	AACTCTGACGCAG	.	108.0	18.0	108.0	0.0	.	Atlas-SNP
FAM81B	153643	hgsc.bcm.edu	37	5	94727146	94727146	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM81B-92	NM_152548	exon1	c.C53T	p.S18L	AAAAATCACAGAG	.	123.0	26.0	129.0	0.0	.	Atlas-SNP
FAM81B	153643	hgsc.bcm.edu	37	5	94772570	94772570	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM81B-92	NM_152548	exon7	c.C853T	p.Q285X	ATGGTCCAGGGGG	.	103.0	50.0	94.0	0.0	.	Atlas-SNP
TTC37	9652	hgsc.bcm.edu	37	5	94852291	94852291	+	Splice_Site	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TTC37-94	NM_014639	exon25	c.2516-1G>A	.	CAATACCTGAAAA	.	108.0	51.0	126.0	0.0	.	Atlas-SNP
ARSK	153642	hgsc.bcm.edu	37	5	94901701	94901701	+	Splice_Site	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ARSK-91	NM_198150	exon2	c.127-1G>T	.	TTTCCAGGATGGA	.	38.0	8.0	53.0	0.0	.	Atlas-SNP
SLCO6A1	133482	hgsc.bcm.edu	37	5	101794169	101794169	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLCO6A1-96	NM_173488	exon6	c.C1048G	p.R350G	GTTTACGTTTCCT	.	52.0	20.0	38.0	0.0	.	Atlas-SNP
PPIP5K2	23262	hgsc.bcm.edu	37	5	102508858	102508858	+	Splice_Site	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PPIP5K2-92	NM_001276277	exon20	c.2287-1G>T	.	TGCTCAGGAATAT	.	55.0	26.0	80.0	0.0	.	Atlas-SNP
APC	324	hgsc.bcm.edu	37	5	112175595	112175595	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	APC,NS,adenoma,+1	APC-12026	NM_001127511	exon14	c.G4250C	p.R1417T	CAAGCAGAAGTAA	.	114.0	29.0	134.0	0.0	.	Atlas-SNP
YTHDC2	64848	hgsc.bcm.edu	37	5	112899724	112899724	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	YTHDC2-92	NM_022828	exon20	c.G2611T	p.V871L	CCTTTTGTACTAC	.	145.0	56.0	136.0	0.0	.	Atlas-SNP
AQPEP	0	hgsc.bcm.edu	37	5	115318994	115318994	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_173800	exon2	c.G706A	p.A236T	CTGTTAGCGTCCC	.	174.0	88.0	258.0	0.0	.	Atlas-SNP
HSD17B4	3295	hgsc.bcm.edu	37	5	118809620	118809620	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HSD17B4-92	NM_000414	exon3	c.G130T	p.D44Y	GGAGGGGACTTCA	.	128.0	20.0	165.0	0.0	.	Atlas-SNP
MEGF10	84466	hgsc.bcm.edu	37	5	126769171	126769171	+	Missense_Mutation	SNP	C	C	G	rs202135671	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MEGF10-94	NM_001256545	exon14	c.C1810G	p.P604A	TGTGCACCAGGCT	.	166.0	40.0	164.0	0.0	C|0.999;A|0.000	Atlas-SNP
FBN2	2201	hgsc.bcm.edu	37	5	127595479	127595479	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FBN2-146	NM_001999	exon65	c.G8407T	p.V2803F	TGTTGACGGGGCT	.	127.0	22.0	145.0	0.0	.	Atlas-SNP
FBN2	2201	hgsc.bcm.edu	37	5	127640733	127640733	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FBN2-146	NM_001999	exon45	c.G5716T	p.G1906C	ACAAGCCATGACT	.	199.0	38.0	209.0	0.0	.	Atlas-SNP
FBN2	2201	hgsc.bcm.edu	37	5	127782257	127782257	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FBN2-146	NM_001999	exon7	c.G869T	p.G290V	CAGTTTCCTCCTT	.	77.0	11.0	83.0	0.0	.	Atlas-SNP
FBN2	2201	hgsc.bcm.edu	37	5	127800433	127800433	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FBN2-146	NM_001999	exon6	c.C810A	p.R270R	TCCAGTGCGGATG	.	45.0	16.0	61.0	0.0	.	Atlas-SNP
SLC27A6	28965	hgsc.bcm.edu	37	5	128302151	128302151	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC27A6-90	NM_001017372	exon1	c.G321T	p.T107T	GGACACGGTGGCT	.	86.0	37.0	105.0	0.0	.	Atlas-SNP
RAD50	10111	hgsc.bcm.edu	37	5	131940656	131940656	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RAD50-229	NM_005732	exon16	c.T2683C	p.S895P	GAATTATCCACTG	.	170.0	33.0	196.0	0.0	.	Atlas-SNP
SHROOM1	134549	hgsc.bcm.edu	37	5	132160321	132160321	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SHROOM1-91	NM_133456	exon3	c.G1227T	p.Q409H	GGGCCCCTGGGAG	.	103.0	50.0	103.0	0.0	.	Atlas-SNP
TXNDC15	79770	hgsc.bcm.edu	37	5	134235224	134235224	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TXNDC15-154	NM_024715	exon5	c.T932A	p.I311K	ACCAAATAGGCCC	.	89.0	18.0	63.0	0.0	.	Atlas-SNP
TRPC7	57113	hgsc.bcm.edu	37	5	135692848	135692848	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_020389	exon2	c.C228G	p.Y76X	CCCCATGTAGTCC	.	167.0	28.0	158.0	0.0	.	Atlas-SNP
EGR1	1958	hgsc.bcm.edu	37	5	137802588	137802588	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EGR1-227	NM_001964	exon2	c.G450T	p.W150C	CTTGTGGCCCGAG	.	109.0	17.0	106.0	0.0	.	Atlas-SNP
PCDHA1	56147	hgsc.bcm.edu	37	5	140167127	140167127	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHA1-23	NM_031410	exon1	c.C1252T	p.L418L	GAGAGCCTGTCGG	.	245.0	60.0	132.0	0.0	.	Atlas-SNP
PCDHA2	56146	hgsc.bcm.edu	37	5	140176290	140176290	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHA2-94	NM_018905	exon1	c.G1741C	p.V581L	GAGCTGGTGCCGT	.	412.0	98.0	90.0	0.0	.	Atlas-SNP
PCDHA3	56145	hgsc.bcm.edu	37	5	140181421	140181421	+	Silent	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHA3-98	NM_031497	exon1	c.A639T	p.T213T	AATAACAGCAATT	.	51.0	24.0	71.0	0.0	.	Atlas-SNP
PCDHA4	56144	hgsc.bcm.edu	37	5	140187138	140187138	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHA4-96	NM_031500	exon1	c.G366A	p.E122E	CGTGGAGGTGAGG	.	234.0	59.0	263.0	0.0	.	Atlas-SNP
PCDHA8	56140	hgsc.bcm.edu	37	5	140223235	140223235	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHA8-92	NM_031856	exon1	c.C2329A	p.P777T	TGCCTTCCTCCTG	.	490.0	102.0	475.0	0.0	.	Atlas-SNP
PCDHA11	56138	hgsc.bcm.edu	37	5	140249406	140249406	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHA11-67	NM_031861	exon1	c.C718A	p.P240T	AATGATCCAGAGT	.	153.0	66.0	156.0	0.0	.	Atlas-SNP
PCDHB1	29930	hgsc.bcm.edu	37	5	140433080	140433080	+	Missense_Mutation	SNP	G	G	C	rs36090285	byfrequency;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHB1-90	NM_013340	exon1	c.G2025C	p.Q675H	GTTCCAGGATCCA	.	150.0	73.0	191.0	0.0	G|0.995;A|0.005	Atlas-SNP
PCDHB4	56131	hgsc.bcm.edu	37	5	140502574	140502574	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHB4-93	NM_018938	exon1	c.G994A	p.V332I	GGCACTGTAGTCA	.	157.0	63.0	175.0	0.0	.	Atlas-SNP
PCDHB16	57717	hgsc.bcm.edu	37	5	140562215	140562215	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHB16-92	NM_020957	exon1	c.C81T	p.G27G	GGCGGGCGCCGAG	.	130.0	46.0	140.0	0.0	.	Atlas-SNP
PCDHB16	57717	hgsc.bcm.edu	37	5	140562775	140562775	+	Missense_Mutation	SNP	C	C	G	rs139379718	byfrequency;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHB16-92	NM_020957	exon1	c.C641G	p.A214G	TGACAGCGCTGGA	.	65.0	13.0	88.0	0.0	C|0.997;T|0.003	Atlas-SNP
PCDHB16	57717	hgsc.bcm.edu	37	5	140562794	140562794	+	Silent	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHB16-92	NM_020957	exon1	c.A660T	p.P220P	CTCTCCACCGCGA	.	73.0	12.0	94.0	0.0	.	Atlas-SNP
PCDHB16	57717	hgsc.bcm.edu	37	5	140563800	140563800	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHB16-92	NM_020957	exon1	c.G1666T	p.D556Y	GCCAACGACAACT	.	222.0	90.0	22.0	0.0	.	Atlas-SNP
PCDHB10	56126	hgsc.bcm.edu	37	5	140573565	140573565	+	Silent	SNP	G	G	T	rs61741789	byfrequency;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHB10-92	NM_018930	exon1	c.G1440T	p.S480S	AGACTCGGGCACC	.	241.0	63.0	141.0	0.0	G|0.680;A|0.320	Atlas-SNP
PCDHB10	56126	hgsc.bcm.edu	37	5	140574448	140574448	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHB10-92	NM_018930	exon1	c.G2323T	p.D775Y	ATTTCGGATATTC	.	141.0	55.0	172.0	0.0	.	Atlas-SNP
PCDHB13	56123	hgsc.bcm.edu	37	5	140595009	140595009	+	Silent	SNP	C	C	G	rs201145725	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHB13-93	NM_018933	exon1	c.C1314G	p.T438T	TATGACCGTGCTG	.	227.0	46.0	235.0	0.0	C|0.999;T|0.000	Atlas-SNP
PCDHB14	56122	hgsc.bcm.edu	37	5	140604121	140604121	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHB14-91	NM_018934	exon1	c.C1044A	p.T348T	AGTGACCATATCG	.	76.0	11.0	81.0	0.0	.	Atlas-SNP
PCDHGA1	56114	hgsc.bcm.edu	37	5	140710828	140710828	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHGA1-137	NM_031993	exon1	c.G577C	p.E193Q	CATCCAGAGATGG	.	89.0	20.0	99.0	0.0	.	Atlas-SNP
PCDHGB1	56104	hgsc.bcm.edu	37	5	140731133	140731133	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHGB1-33	NM_018922	exon1	c.C1306A	p.L436M	ATCACCCTGCACA	.	161.0	76.0	170.0	0.0	.	Atlas-SNP
PCDHGB1	56104	hgsc.bcm.edu	37	5	140731260	140731260	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHGB1-33	NM_018922	exon1	c.G1433T	p.G478V	ATTTGGGACCCAA	.	120.0	71.0	127.0	0.0	.	Atlas-SNP
PCDHGA5	56110	hgsc.bcm.edu	37	5	140744142	140744142	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHGA5-35	NM_032054	exon1	c.G245T	p.G82V	GAAGCGGCAGCTT	.	113.0	30.0	119.0	0.0	.	Atlas-SNP
PCDHGA5	56110	hgsc.bcm.edu	37	5	140745589	140745589	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHGA5-35	NM_032054	exon1	c.C1692T	p.Y564Y	CCTGTACCCCGCC	.	235.0	96.0	247.0	0.0	.	Atlas-SNP
PCDHGA6	56109	hgsc.bcm.edu	37	5	140753654	140753654	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHGA6-67	NM_032086	exon1	c.G4T	p.A2S	GTAATGGCGCCTC	.	215.0	46.0	161.0	0.0	.	Atlas-SNP
PCDHGA7	56108	hgsc.bcm.edu	37	5	140762550	140762550	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_032087	exon1	c.A84G	p.A28A	CTGGGCAGGACGT	.	119.0	26.0	97.0	0.0	.	Atlas-SNP
PCDHGA9	56107	hgsc.bcm.edu	37	5	140782720	140782720	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_018921	exon1	c.C201T	p.V67V	CATCGTCTCTAGA	.	91.0	22.0	94.0	0.0	.	Atlas-SNP
PCDHGA9	56107	hgsc.bcm.edu	37	5	140783342	140783342	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_018921	exon1	c.G823C	p.G275R	ATCAACGGAAAAG	.	92.0	19.0	112.0	0.0	.	Atlas-SNP
PCDHGB7	56099	hgsc.bcm.edu	37	5	140798387	140798387	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHGB7-29	NM_032101	exon1	c.G961T	p.A321S	ATAGAAGCAAAAG	.	128.0	20.0	162.0	0.0	.	Atlas-SNP
YIPF5	81555	hgsc.bcm.edu	37	5	143541849	143541849	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	YIPF5-92	NM_030799	exon5	c.A544T	p.S182C	GGACACTTGCCAC	.	410.0	107.0	414.0	0.0	.	Atlas-SNP
LARS	51520	hgsc.bcm.edu	37	5	145509683	145509683	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LARS-90	NM_020117	exon25	c.G2526A	p.G842G	GTGCATCCCTTCC	.	77.0	37.0	104.0	0.0	.	Atlas-SNP
SH3TC2	79628	hgsc.bcm.edu	37	5	148406710	148406710	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SH3TC2-92	NM_024577	exon11	c.C2585A	p.A862D	TTCAAGGCCCGAA	.	138.0	53.0	182.0	0.0	.	Atlas-SNP
SH3TC2	79628	hgsc.bcm.edu	37	5	148407036	148407036	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SH3TC2-92	NM_024577	exon11	c.G2259T	p.R753R	GGTGCTCCGGTCT	.	217.0	43.0	237.0	0.0	.	Atlas-SNP
PCYOX1L	78991	hgsc.bcm.edu	37	5	148745675	148745675	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCYOX1L-91	NM_024028	exon4	c.G641T	p.R214L	TCCTGCGGGCCAG	.	71.0	34.0	72.0	0.0	.	Atlas-SNP
PDGFRB	5159	hgsc.bcm.edu	37	5	149505087	149505087	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PDGFRB-1499	NM_002609	exon12	c.C1728G	p.G576G	CTCATGGCCGTCA	.	339.0	92.0	245.0	0.0	.	Atlas-SNP
CCDC69	26112	hgsc.bcm.edu	37	5	150565009	150565009	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CCDC69-92	NM_015621	exon7	c.A589T	p.R197W	GCCGCCTGTCCAG	.	139.0	60.0	113.0	0.0	.	Atlas-SNP
FAT2	2196	hgsc.bcm.edu	37	5	150925322	150925322	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAT2-96	NM_001447	exon9	c.C5366A	p.A1789D	TCAGAGGCATGAA	.	86.0	43.0	75.0	0.0	.	Atlas-SNP
KIF4B	285643	hgsc.bcm.edu	37	5	154396953	154396953	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIF4B-1	NM_001099293	exon1	c.G3534T	p.V1178V	GCAGGTGCTGTCA	.	224.0	61.0	162.0	0.0	.	Atlas-SNP
ADAM19	8728	hgsc.bcm.edu	37	5	156997966	156997966	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADAM19-294	NM_033274	exon2	c.C117T	p.P39P	CAGCTTGGGGCTG	.	122.0	52.0	69.0	0.0	.	Atlas-SNP
EBF1	1879	hgsc.bcm.edu	37	5	158139314	158139314	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EBF1-92	NM_024007	exon14	c.C1397A	p.S466X	TGTGGTGATACGC	.	236.0	103.0	189.0	0.0	.	Atlas-SNP
GABRG2	2566	hgsc.bcm.edu	37	5	161576148	161576148	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GABRG2-95	NM_198904	exon8	c.C957G	p.S319R	CCTCAGCACCATT	.	172.0	39.0	115.0	0.0	.	Atlas-SNP
TENM2	57451	hgsc.bcm.edu	37	5	167645293	167645293	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001122679	exon23	c.G4370T	p.S1457I	CACTCAGCAAACT	.	306.0	101.0	252.0	0.0	.	Atlas-SNP
FAM196B	100131897	hgsc.bcm.edu	37	5	169310385	169310385	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001129891	exon2	c.G518C	p.R173T	GGGACCCTTGGGA	.	144.0	57.0	118.0	0.0	.	Atlas-SNP
DOCK2	1794	hgsc.bcm.edu	37	5	169461501	169461501	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DOCK2-97	NM_004946	exon35	c.G3566T	p.R1189L	ATTACCGGGGTGT	.	169.0	87.0	113.0	0.0	.	Atlas-SNP
KCNMB1	3779	hgsc.bcm.edu	37	5	169810783	169810783	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KCNMB1-92	NM_004137	exon3	c.T206G	p.L69R	ACCTTCTTGCCCT	.	182.0	56.0	142.0	0.0	.	Atlas-SNP
TLX3	30012	hgsc.bcm.edu	37	5	170736778	170736778	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TLX3-658	NM_021025	exon1	c.G409A	p.D137N	GTGAAAGACCGCT	.	121.0	44.0	46.0	0.0	.	Atlas-SNP
ADAMTS2	9509	hgsc.bcm.edu	37	5	178770799	178770799	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADAMTS2-228	NM_021599	exon2	c.C503A	p.S168Y	ACAGAGGAGGCTT	.	138.0	51.0	47.0	0.0	.	Atlas-SNP
C5orf60	285679	hgsc.bcm.edu	37	5	179069972	179069972	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001142306	exon4	c.C581A	p.S194Y	TTGGAGGAGCTCA	.	506.0	209.0	364.0	0.0	.	Atlas-SNP
FYB	2533	hgsc.bcm.edu	37	5	39202214	39202215	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FYB-24	NM_001465	exon2	c.849_850insA	p.K283fs	.	.	68.0	21.0	58.0	0.0	.	Atlas-Indel
ADAMTS6	11174	hgsc.bcm.edu	37	5	64483914	64483914	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADAMTS6-226	NM_197941	exon22	c.2840delG	p.R947fs	.	.	98.0	23.0	136.0	0.0	.	Atlas-Indel
TNPO1	3842	hgsc.bcm.edu	37	5	72199544	72199545	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TNPO1-228	NM_002270	exon23	c.2523_2524insT	p.I841fs	.	.	46.0	24.0	79.0	0.0	.	Atlas-Indel
CDYL	9425	hgsc.bcm.edu	37	6	4954182	4954182	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CDYL-90	NM_001143970	exon7	c.G1131T	p.L377L	GGAGCTGGAGCAG	.	150.0	45.0	146.0	0.0	.	Atlas-SNP
ATXN1	6310	hgsc.bcm.edu	37	6	16328522	16328522	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ATXN1-93	NM_000332	exon8	c.G20T	p.R7L	TTGCTCCGCTCTT	.	24.0	5.0	11.0	0.0	.	Atlas-SNP
CDKAL1	54901	hgsc.bcm.edu	37	6	21000542	21000542	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CDKAL1-92	NM_017774	exon11	c.G994T	p.E332X	CTCATGGAAATGA	.	61.0	17.0	55.0	0.0	.	Atlas-SNP
GPLD1	2822	hgsc.bcm.edu	37	6	24473883	24473883	+	Missense_Mutation	SNP	C	C	A	rs139020496	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPLD1-228	NM_001503	exon6	c.G454T	p.G152C	AGGAGCCGTGAAA	.	88.0	49.0	60.0	0.0	C|1.000;T|0.000	Atlas-SNP
HIST1H2BH	8345	hgsc.bcm.edu	37	6	26252078	26252078	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HIST1H2BH-93	NM_003524	exon1	c.T200A	p.V67D	CCTTTGTCAACGA	.	283.0	116.0	249.0	1.0	.	Atlas-SNP
BTN3A3	10384	hgsc.bcm.edu	37	6	26451901	26451901	+	Splice_Site	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BTN3A3-90	NM_006994	exon11	c.1019-2A>T	.	CTCTGCAGCGGAT	.	133.0	40.0	145.0	0.0	.	Atlas-SNP
HIST1H2BM	8342	hgsc.bcm.edu	37	6	27783029	27783029	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HIST1H2BM-131	NM_003521	exon1	c.A208T	p.I70F	AACGACATCTTTG	.	193.0	60.0	200.0	0.0	.	Atlas-SNP
TRIM27	5987	hgsc.bcm.edu	37	6	28872409	28872409	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TRIM27-684	NM_006510	exon8	c.C980G	p.P327R	AGGCTGGGGTAGG	.	6.0	4.0	8.0	0.0	.	Atlas-SNP
GABBR1	2550	hgsc.bcm.edu	37	6	29581230	29581230	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GABBR1-521	NM_021904	exon11	c.G1170T	p.K390N	CAGTCGCTTGGTT	.	149.0	52.0	125.0	0.0	.	Atlas-SNP
TRIM10	10107	hgsc.bcm.edu	37	6	30126189	30126189	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TRIM10-226	NM_006778	exon3	c.G743T	p.R248M	AGCTCCCTTGCTG	.	114.0	31.0	110.0	0.0	.	Atlas-SNP
C6orf47	57827	hgsc.bcm.edu	37	6	31627653	31627653	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	C6orf47-91	NM_021184	exon1	c.G72T	p.P24P	GTAAGGCGGGTCA	.	154.0	49.0	136.0	0.0	.	Atlas-SNP
VARS	7407	hgsc.bcm.edu	37	6	31759413	31759413	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	VARS-93	NM_006295	exon8	c.C1074T	p.N358N	GATGGCGTTGGTG	.	251.0	43.0	231.0	0.0	.	Atlas-SNP
NELFE	7936	hgsc.bcm.edu	37	6	31922485	31922485	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_002904	exon7	c.G589A	p.D197N	CTCTGTCCCGGTT	.	78.0	29.0	83.0	0.0	.	Atlas-SNP
NELFE	7936	hgsc.bcm.edu	37	6	31926215	31926215	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_002904	exon2	c.G9A	p.V3V	GGGTATCACCAAC	.	78.0	34.0	63.0	0.0	.	Atlas-SNP
RXRB	6257	hgsc.bcm.edu	37	6	33164382	33164382	+	Silent	SNP	C	C	A	rs148086899	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RXRB-189	NM_021976	exon5	c.G822T	p.A274A	CTGTACCGCTGCA	.	60.0	12.0	67.0	0.0	C|1.000;T|0.000	Atlas-SNP
ZBTB22	9278	hgsc.bcm.edu	37	6	33283358	33283358	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZBTB22-69	NM_005453	exon2	c.G1336T	p.G446W	GGTTCCCTGGTGG	.	259.0	93.0	236.0	0.0	.	Atlas-SNP
PHF1	5252	hgsc.bcm.edu	37	6	33381015	33381015	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PHF1-226	NM_024165	exon5	c.G380C	p.G127A	CCCCTGGAGAGGG	.	122.0	57.0	142.0	0.0	.	Atlas-SNP
GRM4	2914	hgsc.bcm.edu	37	6	34101175	34101175	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GRM4-525	NM_001256811	exon2	c.G99T	p.K33N	TTTGGGCTTTCCC	.	210.0	76.0	127.0	0.0	.	Atlas-SNP
DNAH8	1769	hgsc.bcm.edu	37	6	38890846	38890846	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DNAH8-615	NM_001206927	exon72	c.G10675T	p.D3559Y	CTTAATGACGCTG	.	37.0	9.0	45.0	0.0	.	Atlas-SNP
KCNK5	8645	hgsc.bcm.edu	37	6	39162077	39162077	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KCNK5-227	NM_003740	exon4	c.G502T	p.V168L	CCCACACGATGAA	.	401.0	134.0	358.0	1.0	.	Atlas-SNP
KCNK16	83795	hgsc.bcm.edu	37	6	39284652	39284652	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KCNK16-229	NM_001135106	exon4	c.G567T	p.M189I	GAAGACCATGGGT	.	112.0	40.0	106.0	0.0	.	Atlas-SNP
DAAM2	23500	hgsc.bcm.edu	37	6	39851832	39851832	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DAAM2-228	NM_001201427	exon15	c.A1940T	p.Y647F	CAGCCTACCAGAG	.	96.0	45.0	91.0	0.0	.	Atlas-SNP
FOXP4	116113	hgsc.bcm.edu	37	6	41555166	41555166	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FOXP4-289	NM_001012426	exon7	c.C788G	p.A263G	CGTTTGCCGCTCC	.	333.0	42.0	192.0	0.0	.	Atlas-SNP
KLC4	89953	hgsc.bcm.edu	37	6	43038449	43038449	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KLC4-94	NM_201521	exon8	c.C1001G	p.P334R	ATCATCCAGATGT	.	293.0	111.0	207.0	0.0	.	Atlas-SNP
SLC22A7	10864	hgsc.bcm.edu	37	6	43266402	43266402	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC22A7-90	NM_006672	exon1	c.G306C	p.G102G	CCGTGGGGAGCTG	.	130.0	55.0	103.0	0.0	.	Atlas-SNP
TJAP1	93643	hgsc.bcm.edu	37	6	43472938	43472938	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TJAP1-90	NM_001146016	exon11	c.G1019T	p.R340L	AGGTTCGGATCCC	.	107.0	35.0	122.0	0.0	.	Atlas-SNP
POLR1C	9533	hgsc.bcm.edu	37	6	43488718	43488718	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	POLR1C-90	NM_203290	exon8	c.G854T	p.R285I	TCAGCAGAGAAAT	.	91.0	34.0	68.0	0.0	.	Atlas-SNP
TDRD6	221400	hgsc.bcm.edu	37	6	46657182	46657182	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TDRD6-138	NM_001010870	exon1	c.G1317A	p.S439S	ACAGTCGTGTTGC	.	50.0	21.0	56.0	0.0	.	Atlas-SNP
PLA2G7	7941	hgsc.bcm.edu	37	6	46677128	46677128	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PLA2G7-90	NM_001168357	exon9	c.G805T	p.V269L	CAATTACTGCTAT	.	80.0	16.0	53.0	0.0	.	Atlas-SNP
ANKRD66	100287718	hgsc.bcm.edu	37	6	46717703	46717703	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001162435	exon2	c.G140C	p.R47T	TGCCCAGAGTTTC	.	77.0	14.0	57.0	0.0	.	Atlas-SNP
GPR111	222611	hgsc.bcm.edu	37	6	47649787	47649787	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPR111-91	NM_153839	exon7	c.G1288T	p.A430S	CTGATGGCAGATG	.	276.0	37.0	264.0	0.0	.	Atlas-SNP
GPR111	222611	hgsc.bcm.edu	37	6	47649788	47649788	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPR111-91	NM_153839	exon7	c.C1289G	p.A430G	TGATGGCAGATGT	.	278.0	37.0	266.0	0.0	.	Atlas-SNP
GPR111	222611	hgsc.bcm.edu	37	6	47649791	47649791	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPR111-91	NM_153839	exon7	c.A1292G	p.D431G	TGGCAGATGTGTG	.	278.0	34.0	269.0	0.0	.	Atlas-SNP
RHAG	6005	hgsc.bcm.edu	37	6	49574560	49574560	+	Splice_Site	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RHAG-154	NM_000324	exon10	c.1212+1G>A	.	ACAGTACCTTCCA	.	82.0	33.0	76.0	0.0	.	Atlas-SNP
CRISP3	10321	hgsc.bcm.edu	37	6	49701562	49701562	+	Splice_Site	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CRISP3-92	NM_001190986	exon6	c.347-1G>T	.	TTAGACCTAAGAA	.	151.0	63.0	124.0	0.0	.	Atlas-SNP
PGK2	5232	hgsc.bcm.edu	37	6	49754711	49754711	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PGK2-91	NM_138733	exon1	c.C190G	p.L64V	GACCTAGATGACT	.	182.0	61.0	164.0	0.0	.	Atlas-SNP
DEFB113	245927	hgsc.bcm.edu	37	6	49936521	49936521	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DEFB113-90	NM_001037729	exon2	c.G118T	p.G40C	AAGCACCACGAAC	.	77.0	28.0	99.0	0.0	.	Atlas-SNP
PKHD1	5314	hgsc.bcm.edu	37	6	51907711	51907711	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PKHD1-603	NM_170724	exon27	c.C3043A	p.L1015I	CATTTAGGAAGAG	.	111.0	31.0	120.0	0.0	.	Atlas-SNP
PKHD1	5314	hgsc.bcm.edu	37	6	51907765	51907765	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PKHD1-603	NM_170724	exon27	c.A2989T	p.M997L	CCAACATCAAGAT	.	155.0	63.0	161.0	0.0	.	Atlas-SNP
PKHD1	5314	hgsc.bcm.edu	37	6	51908447	51908447	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PKHD1-603	NM_170724	exon26	c.G2797T	p.V933F	AATGGACACAGGG	.	110.0	41.0	106.0	0.0	.	Atlas-SNP
MCM3	4172	hgsc.bcm.edu	37	6	52141266	52141266	+	Missense_Mutation	SNP	G	G	A	rs144158830	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MCM3-228	NM_002388	exon9	c.C1309T	p.R437C	CCAGACGGCGCTC	.	127.0	54.0	117.0	0.0	G|0.999;A|0.001	Atlas-SNP
GCLC	2729	hgsc.bcm.edu	37	6	53409375	53409375	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GCLC-515	NM_001498	exon1	c.G69T	p.R23R	GTGCCGCCGCACG	.	114.0	41.0	47.0	0.0	.	Atlas-SNP
FAM83B	222584	hgsc.bcm.edu	37	6	54791229	54791229	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM83B-96	NM_001010872	exon3	c.G505T	p.A169S	GTTGAGGCATCAA	.	66.0	24.0	64.0	0.0	.	Atlas-SNP
DST	667	hgsc.bcm.edu	37	6	56495106	56495106	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DST-523	NM_015548	exon17	c.G2607T	p.L869L	TTCACACAGTTTA	.	59.0	10.0	85.0	0.0	.	Atlas-SNP
ZNF451	26036	hgsc.bcm.edu	37	6	56965611	56965611	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF451-93	NM_001257273	exon4	c.G397T	p.E133X	ATCTCTGAGACAG	.	61.0	18.0	61.0	0.0	.	Atlas-SNP
KHDRBS2	202559	hgsc.bcm.edu	37	6	62407105	62407105	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KHDRBS2-272	NM_152688	exon8	c.G947T	p.S316I	CCGTAGCTGTCAT	.	114.0	32.0	80.0	0.0	.	Atlas-SNP
EYS	346007	hgsc.bcm.edu	37	6	65655797	65655797	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EYS-660	NM_001142800	exon15	c.G2270C	p.C757S	CACACACACTGGT	.	52.0	16.0	50.0	0.0	.	Atlas-SNP
BAI3	577	hgsc.bcm.edu	37	6	69943298	69943298	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BAI3-1148	NM_001704	exon18	c.C2597A	p.P866H	AGCAACCTAGAGA	.	158.0	49.0	199.0	0.0	.	Atlas-SNP
B3GAT2	135152	hgsc.bcm.edu	37	6	71665781	71665781	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	B3GAT2-93	NM_080742	exon1	c.G352T	p.D118Y	CCGCGTCCTCCAC	.	99.0	34.0	16.0	0.0	.	Atlas-SNP
COL12A1	1303	hgsc.bcm.edu	37	6	75814965	75814965	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	COL12A1-142	NM_004370	exon54	c.G8222T	p.C2741F	TGTGTACATGTGC	.	176.0	60.0	211.0	0.0	.	Atlas-SNP
SNAP91	9892	hgsc.bcm.edu	37	6	84290239	84290239	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SNAP91-23	NM_001242792	exon23	c.C2229A	p.P743P	AGGACTGGGTGGT	.	240.0	97.0	262.0	0.0	.	Atlas-SNP
HTR1E	3354	hgsc.bcm.edu	37	6	87725124	87725124	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HTR1E-93	NM_000865	exon2	c.C72G	p.L24L	GATGCTCATTTGC	.	339.0	132.0	300.0	0.0	.	Atlas-SNP
SRSF12	135295	hgsc.bcm.edu	37	6	89827555	89827555	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SRSF12-90	NM_080743	exon1	c.G52T	p.A18S	CGTCCGCGACGTT	.	177.0	69.0	49.0	0.0	.	Atlas-SNP
MAP3K7	6885	hgsc.bcm.edu	37	6	91233443	91233443	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MAP3K7-980	NM_145333	exon13	c.A1335T	p.S445S	CTTTTCTGAGGTT	.	150.0	69.0	151.0	0.0	.	Atlas-SNP
GRIK2	2898	hgsc.bcm.edu	37	6	102124584	102124584	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GRIK2-157	NM_021956	exon4	c.G628C	p.D210H	ACAAAGGATGCAA	.	195.0	74.0	196.0	0.0	.	Atlas-SNP
WISP3	8838	hgsc.bcm.edu	37	6	112375568	112375568	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	WISP3-90	NM_198239	exon1	c.G62T	p.G21V	TGCAGGGGCTCCT	.	121.0	42.0	107.0	0.0	.	Atlas-SNP
HS3ST5	222537	hgsc.bcm.edu	37	6	114378755	114378755	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HS3ST5-92	NM_153612	exon2	c.A707T	p.K236I	AGATGTTTGGTGT	.	139.0	55.0	113.0	0.0	.	Atlas-SNP
HS3ST5	222537	hgsc.bcm.edu	37	6	114379130	114379130	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HS3ST5-92	NM_153612	exon2	c.A332C	p.N111T	TGTAGGTTCAGCA	.	99.0	10.0	65.0	0.0	.	Atlas-SNP
GPRC6A	222545	hgsc.bcm.edu	37	6	117130541	117130541	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPRC6A-96	NM_148963	exon2	c.G434T	p.G145V	CCAGAACCTATGA	.	109.0	50.0	85.0	0.0	.	Atlas-SNP
C6orf170	221322	hgsc.bcm.edu	37	6	121563361	121563361	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	C6orf170-92	NM_152730	exon18	c.G2143T	p.A715S	TTTTTGCATATCG	.	77.0	21.0	85.0	0.0	.	Atlas-SNP
TMEM200A	114801	hgsc.bcm.edu	37	6	130761684	130761684	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TMEM200A-23	NM_001258277	exon3	c.C117G	p.P39P	GAAGCCCATCAGG	.	88.0	41.0	116.0	0.0	.	Atlas-SNP
TMEM200A	114801	hgsc.bcm.edu	37	6	130762826	130762826	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TMEM200A-23	NM_001258277	exon3	c.C1259A	p.P420H	GTTGGCCTAGGTT	.	73.0	27.0	52.0	0.0	.	Atlas-SNP
TMEM200A	114801	hgsc.bcm.edu	37	6	130762909	130762909	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TMEM200A-23	NM_001258277	exon3	c.G1342T	p.V448F	CCCCAAGTTGCCA	.	55.0	22.0	62.0	0.0	.	Atlas-SNP
TAAR5	9038	hgsc.bcm.edu	37	6	132910108	132910108	+	Missense_Mutation	SNP	G	G	T	rs188569215	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TAAR5-91	NM_003967	exon1	c.C718A	p.L240M	CAGCCAGGCTTTT	.	140.0	55.0	125.0	0.0	G|0.999;A|0.001	Atlas-SNP
VNN1	8876	hgsc.bcm.edu	37	6	133032885	133032885	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	VNN1-93	NM_004666	exon2	c.C304T	p.P102S	CTTCAGGGTCTGG	.	114.0	27.0	96.0	0.0	.	Atlas-SNP
AHI1	54806	hgsc.bcm.edu	37	6	135754223	135754223	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	AHI1-227	NM_017651	exon15	c.G2208T	p.L736F	TCGGACCAATATG	.	189.0	62.0	166.0	0.0	.	Atlas-SNP
AHI1	54806	hgsc.bcm.edu	37	6	135754324	135754324	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	AHI1-227	NM_017651	exon15	c.G2107T	p.A703S	ATTTAGCCGTGTA	.	89.0	34.0	116.0	0.0	.	Atlas-SNP
BCLAF1	9774	hgsc.bcm.edu	37	6	136599766	136599766	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BCLAF1-228	NM_014739	exon4	c.G253T	p.G85X	TACCTCCTCCTCC	.	200.0	21.0	147.0	0.0	.	Atlas-SNP
TXLNB	167838	hgsc.bcm.edu	37	6	139563758	139563758	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TXLNB-91	NM_153235	exon10	c.C1960A	p.P654T	GTGGGGGCTGCCT	.	105.0	20.0	70.0	0.0	.	Atlas-SNP
GPR126	57211	hgsc.bcm.edu	37	6	142691775	142691775	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPR126-91	NM_001032394	exon4	c.G914T	p.G305V	TAAAAGGGGACAT	.	136.0	51.0	149.0	0.0	.	Atlas-SNP
ADAT2	134637	hgsc.bcm.edu	37	6	143749780	143749780	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADAT2-90	NM_182503	exon5	c.A501G	p.L167L	GGTCTTTAACATT	.	89.0	36.0	88.0	0.0	.	Atlas-SNP
AKAP12	9590	hgsc.bcm.edu	37	6	151672276	151672276	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	AKAP12-293	NM_005100	exon4	c.C2750T	p.S917L	CTGCTTCAGTGAC	.	135.0	27.0	132.0	0.0	.	Atlas-SNP
CCDC170	80129	hgsc.bcm.edu	37	6	151917690	151917690	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_025059	exon9	c.T1688A	p.L563Q	CCAAACTGGCCGA	.	161.0	51.0	126.0	0.0	.	Atlas-SNP
SYNE1	23345	hgsc.bcm.edu	37	6	152737529	152737529	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SYNE1-607	NM_033071	exon41	c.C6064T	p.Q2022X	TCTGCTGAAGAGC	.	34.0	11.0	40.0	0.0	.	Atlas-SNP
SYNE1	23345	hgsc.bcm.edu	37	6	152793441	152793441	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SYNE1-607	NM_033071	exon15	c.C1479G	p.A493A	CCTCTCGGCCATG	.	111.0	35.0	92.0	0.0	.	Atlas-SNP
MYCT1	80177	hgsc.bcm.edu	37	6	153042879	153042879	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYCT1-91	NM_025107	exon2	c.G199T	p.D67Y	TCAGAGGACCTTA	.	62.0	30.0	46.0	0.0	.	Atlas-SNP
IPCEF1	26034	hgsc.bcm.edu	37	6	154587053	154587053	+	Missense_Mutation	SNP	C	C	A	rs139019503	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IPCEF1-90	NM_001130700	exon3	c.G29T	p.S10I	AGAGCACTGCCAT	.	119.0	44.0	120.0	0.0	C|1.000;T|0.000	Atlas-SNP
TIAM2	26230	hgsc.bcm.edu	37	6	155458506	155458506	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TIAM2-93	NM_012454	exon4	c.C1390G	p.R464G	TTCATGCGAGAGT	.	120.0	36.0	130.0	0.0	.	Atlas-SNP
NOX3	50508	hgsc.bcm.edu	37	6	155764494	155764494	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NOX3-91	NM_015718	exon5	c.G399T	p.E133D	GGCCTCCTCGGAC	.	218.0	85.0	189.0	0.0	.	Atlas-SNP
ARID1B	57492	hgsc.bcm.edu	37	6	157505500	157505500	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ARID1B-154	NM_017519	exon12	c.G3442T	p.E1148X	GGGGAGGAGCCCC	.	187.0	75.0	141.0	0.0	.	Atlas-SNP
RSPH3	83861	hgsc.bcm.edu	37	6	159401950	159401950	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RSPH3-92	NM_031924	exon6	c.C1141T	p.Q381X	CCCACTGCTGTTT	.	156.0	47.0	124.0	0.0	.	Atlas-SNP
IGF2R	3482	hgsc.bcm.edu	37	6	160468852	160468852	+	Missense_Mutation	SNP	G	G	T	rs141234361	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IGF2R-118	NM_000876	exon17	c.G2258T	p.R753L	ACTTCCGGTGGTA	.	121.0	40.0	100.0	0.0	G|1.000;A|0.000	Atlas-SNP
PLG	5340	hgsc.bcm.edu	37	6	161134147	161134147	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PLG-94	NM_000301	exon5	c.T537A	p.L179L	CATTCTTGAGTGT	.	137.0	46.0	100.0	0.0	.	Atlas-SNP
PDE10A	10846	hgsc.bcm.edu	37	6	165801852	165801852	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PDE10A-519	NM_001130690	exon17	c.G1747T	p.A583S	GAGCGGCCAGAGG	.	177.0	55.0	130.0	0.0	.	Atlas-SNP
T	6862	hgsc.bcm.edu	37	6	166580287	166580287	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	T-516	NM_001270484	exon3	c.C264A	p.Y88X	GAAGGAGTACATG	.	225.0	81.0	135.0	0.0	.	Atlas-SNP
TTLL2	83887	hgsc.bcm.edu	37	6	167755029	167755029	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TTLL2-92	NM_031949	exon3	c.A1641T	p.K547N	TGGCAAAGCTCCA	.	165.0	54.0	113.0	0.0	.	Atlas-SNP
THBS2	7058	hgsc.bcm.edu	37	6	169629675	169629675	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	THBS2-95	NM_003247	exon15	c.G2251T	p.D751Y	TCTCATCGGTCAC	.	97.0	31.0	69.0	0.0	.	Atlas-SNP
SYNE1	23345	hgsc.bcm.edu	37	6	152647669	152647669	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SYNE1-607	NM_182961	exon79	c.15056delC	p.A5019fs	.	.	125.0	33.0	111.0	0.0	.	Atlas-Indel
IGF2R	3482	hgsc.bcm.edu	37	6	160468850	160468850	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IGF2R-118	NM_000876	exon17	c.2255delT	p.F752fs	.	.	119.0	39.0	100.0	0.0	.	Atlas-Indel
PGK2	5232	hgsc.bcm.edu	37	6	49754216	49754216	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PGK2-91	NM_138733	exon1	c.686delA	p.D229fs	.	.	290.0	55.0	321.0	0.0	.	Pindel
GPRC6A	222545	hgsc.bcm.edu	37	6	117116960	117116960	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPRC6A-96	NM_148963	exon5	c.1588delC	p.Q530fs	.	.	73.0	19.0	58.0	0.0	.	Pindel
IGF2R	3482	hgsc.bcm.edu	37	6	160468851	160468852	+	Frame_Shift_Del	DEL	CG	CG	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	CG	CG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IGF2R-118	NM_000876	exon17	c.2256_2257del	p.752_753del	.	.	121.0	31.0	103.0	0.0	.	Pindel
MAD1L1	8379	hgsc.bcm.edu	37	7	1976421	1976421	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MAD1L1-1083	NM_001013836	exon17	c.G1709T	p.R570L	CGCAGTCGCTCGC	.	117.0	40.0	18.0	0.0	.	Atlas-SNP
CARD11	84433	hgsc.bcm.edu	37	7	2976779	2976779	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CARD11-870	NM_032415	exon9	c.G1233T	p.E411D	CTTCTCCTCCAGC	.	145.0	40.0	157.0	0.0	.	Atlas-SNP
CARD11	84433	hgsc.bcm.edu	37	7	2978414	2978414	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CARD11-870	NM_032415	exon7	c.G916C	p.E306Q	CGTGTTCCAAGAT	.	75.0	13.0	61.0	0.0	.	Atlas-SNP
TNRC18	84629	hgsc.bcm.edu	37	7	5401321	5401321	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TNRC18-46	NM_001080495	exon14	c.C4565T	p.A1522V	CTGCGTGCCAAGC	.	73.0	18.0	12.0	0.0	.	Atlas-SNP
GRID2IP	392862	hgsc.bcm.edu	37	7	6554007	6554007	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001145118	exon8	c.A1422T	p.T474T	CTTACCTGTCATG	.	27.0	11.0	46.0	0.0	.	Atlas-SNP
GRID2IP	392862	hgsc.bcm.edu	37	7	6561558	6561558	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001145118	exon5	c.C950A	p.S317X	TCACCTGACTTGA	.	104.0	30.0	95.0	0.0	.	Atlas-SNP
ICA1	3382	hgsc.bcm.edu	37	7	8258073	8258073	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ICA1-515	NM_004968	exon6	c.T441T	p.Y147Y	GATGGCCCGATGC	.	89.0	30.0	123.0	0.0	.	Atlas-SNP
ICA1	3382	hgsc.bcm.edu	37	7	8258074	8258074	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ICA1-515	NM_004968	exon6	c.A440T	p.Y147F	ATGGCCCGATGCC	.	90.0	31.0	122.0	0.0	.	Atlas-SNP
THSD7A	221981	hgsc.bcm.edu	37	7	11419313	11419313	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	THSD7A-71	NM_015204	exon24	c.G4534A	p.D1512N	CGGCATCAGGCTG	.	86.0	21.0	127.0	0.0	.	Atlas-SNP
THSD7A	221981	hgsc.bcm.edu	37	7	11419314	11419314	+	Silent	SNP	A	A	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	THSD7A-71	NM_015204	exon24	c.T4533G	p.P1511P	GGCATCAGGCTGG	.	86.0	20.0	127.0	0.0	.	Atlas-SNP
THSD7A	221981	hgsc.bcm.edu	37	7	11419315	11419315	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	THSD7A-71	NM_015204	exon24	c.C4532T	p.P1511L	GCATCAGGCTGGC	.	85.0	21.0	123.0	0.0	.	Atlas-SNP
VWDE	221806	hgsc.bcm.edu	37	7	12396973	12396973	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	VWDE-68	NM_001135924	exon17	c.G3443C	p.W1148S	GTTTTCCACATAA	.	64.0	21.0	54.0	0.0	.	Atlas-SNP
DGKB	1607	hgsc.bcm.edu	37	7	14661070	14661070	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DGKB-276	NM_145695	exon14	c.A1220T	p.N407I	ACTTTGTTTGGCT	.	34.0	9.0	61.0	0.0	.	Atlas-SNP
DGKB	1607	hgsc.bcm.edu	37	7	14775769	14775769	+	Silent	SNP	G	G	T	rs10238323	byfrequency;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DGKB-276	NM_145695	exon4	c.C219A	p.A73A	AAGCTCGGCTTCC	.	104.0	22.0	146.0	0.0	G|0.984;A|0.016	Atlas-SNP
ITGB8	3696	hgsc.bcm.edu	37	7	20444293	20444293	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ITGB8-227	NM_002214	exon11	c.G1730C	p.G577A	TCAGTGGCTGGGA	.	152.0	36.0	223.0	0.0	.	Atlas-SNP
SP8	221833	hgsc.bcm.edu	37	7	20824578	20824578	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SP8-91	NM_198956	exon3	c.C804T	p.S268S	GTGCGAGGAGGCG	.	30.0	6.0	32.0	0.0	.	Atlas-SNP
DFNA5	1687	hgsc.bcm.edu	37	7	24789190	24789190	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DFNA5-91	NM_001127453	exon2	c.G204T	p.P68P	TGGACTCGGAAAT	.	32.0	7.0	42.0	0.0	.	Atlas-SNP
C7orf31	136895	hgsc.bcm.edu	37	7	25182373	25182373	+	Missense_Mutation	SNP	C	C	G	rs17150982	byfrequency;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	C7orf31-90	NM_138811	exon8	c.G745C	p.A249P	TAGGAGCGAAGGT	.	58.0	17.0	71.0	0.0	C|0.971;T|0.029	Atlas-SNP
EVX1	2128	hgsc.bcm.edu	37	7	27283071	27283071	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EVX1-91	NM_001989	exon1	c.G422A	p.S141N	AGCACAGCAAAGG	.	72.0	15.0	78.0	0.0	.	Atlas-SNP
BMPER	168667	hgsc.bcm.edu	37	7	34006114	34006114	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BMPER-92	NM_133468	exon5	c.T343C	p.Y115H	AATACCTATAACA	.	50.0	11.0	107.0	0.0	.	Atlas-SNP
BMPER	168667	hgsc.bcm.edu	37	7	34125628	34125628	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BMPER-92	NM_133468	exon14	c.C1669A	p.H557N	CGGGCCCATCGAG	.	117.0	20.0	172.0	0.0	.	Atlas-SNP
AOAH	313	hgsc.bcm.edu	37	7	36726385	36726385	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	AOAH-91	NM_001637	exon2	c.G142T	p.V48L	CAGACACCACCAG	.	137.0	48.0	151.0	0.0	.	Atlas-SNP
ELMO1	9844	hgsc.bcm.edu	37	7	37298802	37298802	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ELMO1-96	NM_001206480	exon6	c.G397T	p.V133L	TCTCCACCATCTG	.	84.0	29.0	115.0	0.0	.	Atlas-SNP
POU6F2	11281	hgsc.bcm.edu	37	7	39379343	39379343	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	POU6F2-90	NM_007252	exon6	c.C614A	p.P205Q	AGCACCCGCAACC	.	23.0	6.0	12.0	0.0	.	Atlas-SNP
MPLKIP	136647	hgsc.bcm.edu	37	7	40174042	40174042	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_138701	exon1	c.G125T	p.R42L	CCGTCTCGAGGGG	.	62.0	16.0	10.0	0.0	.	Atlas-SNP
INHBA	3624	hgsc.bcm.edu	37	7	41739811	41739811	+	Missense_Mutation	SNP	C	C	A	rs140132631		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	INHBA-703	NM_002192	exon2	c.G162T	p.M54I	CTCCACCATCTCT	.	42.0	15.0	87.0	0.0	C|1.000;A|0.000	Atlas-SNP
RAMP3	10268	hgsc.bcm.edu	37	7	45222995	45222995	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RAMP3-90	NM_005856	exon3	c.C431G	p.T144S	AACGCACCGACAC	.	100.0	29.0	109.0	0.0	.	Atlas-SNP
ADCY1	107	hgsc.bcm.edu	37	7	45697346	45697346	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADCY1-95	NM_021116	exon6	c.A1169G	p.E390G	CCACCGAGGTGGA	.	136.0	41.0	200.0	0.0	.	Atlas-SNP
ADCY1	107	hgsc.bcm.edu	37	7	45697347	45697347	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADCY1-95	NM_021116	exon6	c.G1170A	p.E390E	CACCGAGGTGGAT	.	136.0	40.0	201.0	0.0	.	Atlas-SNP
ADCY1	107	hgsc.bcm.edu	37	7	45753294	45753294	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADCY1-95	NM_021116	exon20	c.G3060T	p.V1020V	ACAGGTGACTGAG	.	140.0	43.0	185.0	0.0	.	Atlas-SNP
IGFBP1	3484	hgsc.bcm.edu	37	7	45932578	45932578	+	Missense_Mutation	SNP	G	G	T	rs201339143	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IGFBP1-946	NM_000596	exon4	c.G668T	p.G223V	TGGATGGAGAGGC	.	53.0	15.0	53.0	0.0	.	Atlas-SNP
ABCA13	154664	hgsc.bcm.edu	37	7	48314688	48314688	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ABCA13-521	NM_152701	exon17	c.C5425G	p.P1809A	GATAAGCCAGATA	.	34.0	14.0	74.0	0.0	.	Atlas-SNP
COBL	23242	hgsc.bcm.edu	37	7	51092894	51092894	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	COBL-95	NM_015198	exon12	c.G3680T	p.S1227I	CCCGTGCTGAACC	.	84.0	24.0	90.0	0.0	.	Atlas-SNP
COBL	23242	hgsc.bcm.edu	37	7	51111286	51111286	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	COBL-95	NM_015198	exon8	c.G1200T	p.S400S	GTCCTCCGACGCA	.	79.0	33.0	108.0	0.0	.	Atlas-SNP
VSTM2A	222008	hgsc.bcm.edu	37	7	54617625	54617625	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_182546	exon4	c.C396G	p.A132A	TGATGCCAACTAC	.	166.0	46.0	216.0	0.0	.	Atlas-SNP
LANCL2	55915	hgsc.bcm.edu	37	7	55479679	55479679	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LANCL2-516	NM_018697	exon6	c.G905T	p.R302L	AATTCCGATCTGG	.	157.0	53.0	130.0	0.0	.	Atlas-SNP
CCT6A	908	hgsc.bcm.edu	37	7	56128072	56128072	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CCT6A-91	NM_001009186	exon9	c.G1041T	p.R347S	AGTGAGGGACGGC	.	120.0	31.0	168.0	0.0	.	Atlas-SNP
ZNF479	90827	hgsc.bcm.edu	37	7	57188839	57188839	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF479-72	NM_033273	exon5	c.C283G	p.Q95E	GGTCTTGGGTGAA	.	88.0	24.0	129.0	0.0	.	Atlas-SNP
ZNF727	442319	hgsc.bcm.edu	37	7	63529396	63529396	+	Splice_Site	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001159522	exon2	c.130+1G>A	.	CCTTGGGTGAGAA	.	52.0	17.0	51.0	0.0	.	Atlas-SNP
ASL	435	hgsc.bcm.edu	37	7	65554141	65554141	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ASL-153	NM_001024944	exon11	c.G897A	p.K299K	GAGCAAGGCTGGG	.	124.0	50.0	81.0	0.0	.	Atlas-SNP
CRCP	27297	hgsc.bcm.edu	37	7	65617218	65617218	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CRCP-90	NM_014478	exon6	c.G321T	p.R107R	AGAGCGGCTCACG	.	83.0	25.0	86.0	0.0	.	Atlas-SNP
CALN1	83698	hgsc.bcm.edu	37	7	71571250	71571250	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CALN1-91	NM_031468	exon4	c.C274A	p.R92R	CATCCCGGTCCAG	.	96.0	43.0	94.0	0.0	.	Atlas-SNP
MDH2	4191	hgsc.bcm.edu	37	7	75689773	75689773	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MDH2-228	NM_005918	exon5	c.C512T	p.T171I	TGACGACCCTGGA	.	202.0	69.0	168.0	0.0	.	Atlas-SNP
MAGI2	9863	hgsc.bcm.edu	37	7	78131057	78131057	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MAGI2-461	NM_012301	exon5	c.C802A	p.P268T	GGGAGGGCATCTC	.	105.0	32.0	82.0	0.0	.	Atlas-SNP
HGF	3082	hgsc.bcm.edu	37	7	81359060	81359060	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HGF-516	NM_000601	exon8	c.G901T	p.E301X	TTGTTTCCAAAGG	.	59.0	13.0	94.0	0.0	.	Atlas-SNP
HGF	3082	hgsc.bcm.edu	37	7	81359061	81359061	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HGF-516	NM_000601	exon8	c.G900T	p.L300F	TGTTTCCAAAGGA	.	58.0	13.0	93.0	0.0	.	Atlas-SNP
SEMA3D	223117	hgsc.bcm.edu	37	7	84628911	84628911	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SEMA3D-138	NM_152754	exon17	c.C2179A	p.L727I	GGTCGAGGCTGAA	.	221.0	76.0	216.0	0.0	.	Atlas-SNP
SEMA3D	223117	hgsc.bcm.edu	37	7	84644451	84644451	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SEMA3D-138	NM_152754	exon14	c.G1627T	p.D543Y	AACAGTCTGCGCA	.	205.0	81.0	213.0	0.0	.	Atlas-SNP
SEMA3D	223117	hgsc.bcm.edu	37	7	84644491	84644491	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SEMA3D-138	NM_152754	exon14	c.C1587A	p.L529L	CAAGGAGAGCTGA	.	197.0	72.0	206.0	0.0	.	Atlas-SNP
GRM3	2913	hgsc.bcm.edu	37	7	86394645	86394645	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GRM3-528	NM_000840	exon2	c.G184A	p.E62K	ATCAATGAAGACC	.	185.0	37.0	156.0	0.0	.	Atlas-SNP
ABCB4	5244	hgsc.bcm.edu	37	7	87082308	87082308	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ABCB4-96	NM_018849	exon6	c.G488T	p.G163V	AACCATCCTATTT	.	97.0	29.0	116.0	0.0	.	Atlas-SNP
ABCB1	5243	hgsc.bcm.edu	37	7	87138732	87138732	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ABCB1-582	NM_000927	exon27	c.G3348T	p.V1116V	CTGGGACACGATG	.	157.0	24.0	149.0	0.0	.	Atlas-SNP
DBF4	10926	hgsc.bcm.edu	37	7	87526653	87526653	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DBF4-253	NM_006716	exon8	c.C679A	p.Q227K	ATGAGCCAGTAAG	.	71.0	20.0	72.0	0.0	.	Atlas-SNP
ZNF804B	219578	hgsc.bcm.edu	37	7	88963902	88963902	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF804B-101	NM_181646	exon4	c.C1606T	p.P536S	CCGAAACCAAAGA	.	117.0	32.0	141.0	0.0	.	Atlas-SNP
ZNF804B	219578	hgsc.bcm.edu	37	7	88966065	88966065	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF804B-101	NM_181646	exon4	c.C3769A	p.P1257T	ATTATCCCTGCAC	.	129.0	50.0	119.0	0.0	.	Atlas-SNP
SAMD9L	219285	hgsc.bcm.edu	37	7	92763958	92763958	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SAMD9L-94	NM_152703	exon5	c.G1327T	p.V443L	CCAACACAGCAAA	.	38.0	11.0	44.0	0.0	.	Atlas-SNP
CALCR	799	hgsc.bcm.edu	37	7	93073002	93073002	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CALCR-664	NM_001742	exon9	c.G716T	p.C239F	CCTTCACAGAGCA	.	158.0	62.0	128.0	0.0	.	Atlas-SNP
SHFM1	7979	hgsc.bcm.edu	37	7	96324204	96324204	+	Splice_Site	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SHFM1-227	NM_006304	exon3	c.77-1G>T	.	CCCAGTCTAAAAA	.	48.0	22.0	51.0	0.0	.	Atlas-SNP
BAIAP2L1	55971	hgsc.bcm.edu	37	7	97944819	97944819	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BAIAP2L1-91	NM_018842	exon7	c.G592T	p.D198Y	GCTTATCAACCAG	.	116.0	34.0	99.0	0.0	.	Atlas-SNP
ZNF655	79027	hgsc.bcm.edu	37	7	99169990	99169990	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF655-91	NM_001083956	exon4	c.A364G	p.R122G	GAGACTAGAGAAG	.	90.0	5.0	57.0	0.0	.	Atlas-SNP
PLOD3	8985	hgsc.bcm.edu	37	7	100855544	100855544	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PLOD3-92	NM_001084	exon10	c.G1117T	p.D373Y	CCATGTCCCTGGC	.	162.0	58.0	104.0	0.0	.	Atlas-SNP
PLOD3	8985	hgsc.bcm.edu	37	7	100855545	100855545	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PLOD3-92	NM_001084	exon10	c.G1116A	p.R372R	CATGTCCCTGGCC	.	162.0	57.0	104.0	0.0	.	Atlas-SNP
MYL10	93408	hgsc.bcm.edu	37	7	101259519	101259519	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYL10-136	NM_138403	exon6	c.G514T	p.G172C	CGAAACCTTTCCC	.	173.0	55.0	157.0	0.0	.	Atlas-SNP
RELN	5649	hgsc.bcm.edu	37	7	103163855	103163855	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RELN-574	NM_005045	exon47	c.C7473G	p.C2491W	CTGGATGCATCTC	.	139.0	42.0	144.0	0.0	.	Atlas-SNP
SLC26A3	1811	hgsc.bcm.edu	37	7	107431510	107431510	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC26A3-94	NM_000111	exon5	c.C553G	p.L185V	CAGAAAGCACTGT	.	239.0	79.0	206.0	0.0	.	Atlas-SNP
LAMB4	22798	hgsc.bcm.edu	37	7	107684339	107684339	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LAMB4-140	NM_007356	exon29	c.C4329A	p.I1443I	ACTTTCGATCTGG	.	36.0	11.0	28.0	0.0	.	Atlas-SNP
NRCAM	4897	hgsc.bcm.edu	37	7	107816985	107816985	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NRCAM-156	NM_001037132	exon24	c.C3041A	p.T1014N	TTTAAAGTCCACC	.	62.0	21.0	51.0	0.0	.	Atlas-SNP
NRCAM	4897	hgsc.bcm.edu	37	7	107880406	107880406	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NRCAM-156	NM_001037132	exon1	c.G103T	p.D35Y	TACGATCAAGAGG	.	72.0	24.0	82.0	0.0	.	Atlas-SNP
PNPLA8	50640	hgsc.bcm.edu	37	7	108119816	108119816	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PNPLA8-135	NM_001256010	exon9	c.G1586T	p.G529V	AGCAAACCTCCAT	.	85.0	24.0	70.0	0.0	.	Atlas-SNP
FOXP2	93986	hgsc.bcm.edu	37	7	114294061	114294061	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FOXP2-295	NM_148899	exon9	c.A1263T	p.K421N	TCCCAAACCTGTA	.	66.0	20.0	51.0	0.0	.	Atlas-SNP
ASZ1	136991	hgsc.bcm.edu	37	7	117062373	117062373	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ASZ1-515	NM_130768	exon3	c.C246T	p.P82P	CATAAGGGGAGTC	.	106.0	41.0	90.0	0.0	.	Atlas-SNP
ANKRD7	56311	hgsc.bcm.edu	37	7	117864956	117864956	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ANKRD7-90	NM_019644	exon1	c.G72T	p.K24N	AGAAAAGGATTTA	.	302.0	101.0	243.0	0.0	.	Atlas-SNP
KCND2	3751	hgsc.bcm.edu	37	7	119914836	119914836	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KCND2-517	NM_012281	exon1	c.C150A	p.T50T	TGGCACCCGCTTC	.	177.0	62.0	169.0	0.0	.	Atlas-SNP
CPED1	79974	hgsc.bcm.edu	37	7	120770181	120770181	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_024913	exon12	c.C1410A	p.L470L	TCAGCTCTTCCCA	.	82.0	25.0	62.0	0.0	.	Atlas-SNP
PTPRZ1	5803	hgsc.bcm.edu	37	7	121624143	121624143	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PTPRZ1-699	NM_001206838	exon8	c.C900G	p.Y300X	CTCATACACTGGA	.	65.0	21.0	47.0	0.0	.	Atlas-SNP
ASB15	142685	hgsc.bcm.edu	37	7	123270074	123270074	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ASB15-228	NM_080928	exon9	c.C1495A	p.R499S	GTTACTCGTGTAC	.	102.0	30.0	89.0	0.0	.	Atlas-SNP
PAX4	5078	hgsc.bcm.edu	37	7	127253093	127253093	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PAX4-227	NM_006193	exon6	c.G674T	p.W225L	ATTTCCCACTTGA	.	196.0	68.0	167.0	0.0	.	Atlas-SNP
PAX4	5078	hgsc.bcm.edu	37	7	127253928	127253928	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PAX4-227	NM_006193	exon4	c.G420T	p.L140F	TGGAGCCAAAACA	.	90.0	22.0	62.0	0.0	.	Atlas-SNP
FAM71F2	346653	hgsc.bcm.edu	37	7	128315858	128315858	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001012454	exon2	c.G310T	p.G104C	CCCCAGGGTCCAT	.	56.0	26.0	47.0	0.0	.	Atlas-SNP
SMO	6608	hgsc.bcm.edu	37	7	128845593	128845593	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SMO-2451	NM_005631	exon4	c.C890T	p.A297V	GCCGTGCAGATGG	.	85.0	33.0	37.0	0.0	.	Atlas-SNP
SMO	6608	hgsc.bcm.edu	37	7	128846172	128846172	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SMO-2451	NM_005631	exon5	c.C1102G	p.P368A	TCACTCCCCTTTG	.	202.0	79.0	166.0	0.0	.	Atlas-SNP
PLXNA4	91584	hgsc.bcm.edu	37	7	131865384	131865384	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PLXNA4-91	NM_020911	exon19	c.C3600A	p.L1200L	CTCGCAGAGCAGC	.	194.0	76.0	147.0	0.0	.	Atlas-SNP
PLXNA4	91584	hgsc.bcm.edu	37	7	131912280	131912280	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PLXNA4-91	NM_020911	exon7	c.G1812C	p.L604L	CACGACCAGCCCA	.	244.0	86.0	213.0	0.0	.	Atlas-SNP
CNOT4	4850	hgsc.bcm.edu	37	7	135082955	135082955	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CNOT4-90	NM_001190850	exon8	c.C845G	p.S282C	CTGAGAGAATCTG	.	62.0	24.0	41.0	0.0	.	Atlas-SNP
PTN	5764	hgsc.bcm.edu	37	7	136912824	136912824	+	Splice_Site	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PTN-516	NM_002825	exon6	c.452-2A>T	.	TTCTGCTGTGATT	.	17.0	7.0	10.0	0.0	.	Atlas-SNP
SVOPL	136306	hgsc.bcm.edu	37	7	138363243	138363243	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SVOPL-68	NM_001139456	exon2	c.C110T	p.A37V	TCCACTGCATCTT	.	99.0	36.0	81.0	0.0	.	Atlas-SNP
JHDM1D	80853	hgsc.bcm.edu	37	7	139791751	139791751	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	JHDM1D-91	NM_030647	exon19	c.T2584G	p.S862A	GGTTTGAATTCTG	.	219.0	73.0	176.0	0.0	.	Atlas-SNP
JHDM1D	80853	hgsc.bcm.edu	37	7	139810956	139810956	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	JHDM1D-91	NM_030647	exon11	c.C1367T	p.P456L	TTGTCTGGAATTT	.	67.0	10.0	35.0	0.0	.	Atlas-SNP
DENND2A	27147	hgsc.bcm.edu	37	7	140246647	140246647	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DENND2A-138	NM_015689	exon11	c.G2130T	p.L710L	TTTGCCCAGGGCT	.	285.0	77.0	193.0	0.0	.	Atlas-SNP
DENND2A	27147	hgsc.bcm.edu	37	7	140269463	140269463	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DENND2A-138	NM_015689	exon5	c.G1522T	p.E508X	TGCTCTCCATTGA	.	95.0	16.0	56.0	0.0	.	Atlas-SNP
DENND2A	27147	hgsc.bcm.edu	37	7	140269464	140269464	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DENND2A-138	NM_015689	exon5	c.G1521T	p.M507I	GCTCTCCATTGAC	.	96.0	16.0	58.0	0.0	.	Atlas-SNP
TAS2R3	50831	hgsc.bcm.edu	37	7	141464522	141464522	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TAS2R3-90	NM_016943	exon1	c.G564T	p.W188C	TCTGTGGTACCTG	.	325.0	88.0	169.0	0.0	.	Atlas-SNP
MGAM	8972	hgsc.bcm.edu	37	7	141805635	141805635	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MGAM-70	NM_004668	exon48	c.G5518A	p.D1840N	GTGACTGACAGAA	.	153.0	30.0	95.0	0.0	.	Atlas-SNP
PRSS58	136541	hgsc.bcm.edu	37	7	141955029	141955029	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PRSS58-24	NM_001001317	exon4	c.A282T	p.S94S	AGTGACTGAGAAG	.	234.0	59.0	122.0	0.0	.	Atlas-SNP
TRPV5	56302	hgsc.bcm.edu	37	7	142606676	142606676	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TRPV5-177	NM_019841	exon14	c.G1875T	p.L625L	GTCCCCCAGCCCG	.	126.0	38.0	104.0	0.0	.	Atlas-SNP
KEL	3792	hgsc.bcm.edu	37	7	142638380	142638380	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KEL-93	NM_000420	exon19	c.G2158T	p.G720C	GAGCACCACGTGC	.	156.0	51.0	114.0	0.0	.	Atlas-SNP
OR9A2	135924	hgsc.bcm.edu	37	7	142723927	142723927	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR9A2-69	NM_001001658	exon1	c.C293A	p.S98X	TTGAGCGATACAT	.	392.0	96.0	251.0	0.0	.	Atlas-SNP
OR6V1	346517	hgsc.bcm.edu	37	7	142749491	142749491	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR6V1-23	NM_001001667	exon1	c.T54C	p.F18F	CTCCTTTGGTGAG	.	173.0	21.0	135.0	0.0	.	Atlas-SNP
PIP	5304	hgsc.bcm.edu	37	7	142836633	142836633	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PIP-91	NM_002652	exon4	c.C339A	p.V113V	AGCCGTCGTTGAT	.	162.0	36.0	108.0	0.0	.	Atlas-SNP
OR2F1	26211	hgsc.bcm.edu	37	7	143657461	143657461	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR2F1-71	NM_012369	exon1	c.C398A	p.S133X	GATACTCGGCCAT	.	429.0	226.0	273.0	0.0	.	Atlas-SNP
OR2A14	135941	hgsc.bcm.edu	37	7	143826651	143826651	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR2A14-90	NM_001001659	exon1	c.T446A	p.V149E	CCTGGGTGTTCAG	.	232.0	64.0	150.0	0.0	.	Atlas-SNP
NOBOX	135935	hgsc.bcm.edu	37	7	144098647	144098647	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NOBOX-69	NM_001080413	exon4	c.G336A	p.E112E	TTCCTCCTCCCCG	.	32.0	8.0	20.0	0.0	.	Atlas-SNP
CNTNAP2	26047	hgsc.bcm.edu	37	7	145813997	145813997	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CNTNAP2-100	NM_014141	exon1	c.G29C	p.G10A	GCTGCGGGGCAGC	.	71.0	26.0	27.0	0.0	.	Atlas-SNP
ZNF467	168544	hgsc.bcm.edu	37	7	149466284	149466284	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF467-90	NM_207336	exon4	c.G157T	p.E53X	GGGCCTCGTGCCC	.	101.0	36.0	71.0	0.0	.	Atlas-SNP
SLC4A2	6522	hgsc.bcm.edu	37	7	150771826	150771826	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC4A2-90	NM_001199694	exon18	c.C2903T	p.P968L	TCAACCCCCTGGG	.	148.0	51.0	131.0	0.0	.	Atlas-SNP
PRKAG2	51422	hgsc.bcm.edu	37	7	151478357	151478357	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PRKAG2-658	NM_016203	exon3	c.G347C	p.R116P	GGGGAGCGTGGCG	.	63.0	22.0	55.0	0.0	.	Atlas-SNP
MLL3	58508	hgsc.bcm.edu	37	7	151947965	151947965	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MLL3-1398	NM_170606	exon12	c.G1708T	p.E570X	TGGACTCCTGACC	.	57.0	26.0	50.0	0.0	.	Atlas-SNP
DPP6	1804	hgsc.bcm.edu	37	7	153584820	153584820	+	Splice_Site	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DPP6-652	NM_001039350	exon1	c.51+1G>T	.	GTGATGGTGAGTG	.	144.0	19.0	111.0	0.0	.	Atlas-SNP
DPP6	1804	hgsc.bcm.edu	37	7	153749961	153749961	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DPP6-652	NM_130797	exon1	c.C56A	p.P19H	CCTTCCCCGCGCC	.	23.0	11.0	16.0	0.0	.	Atlas-SNP
DPP6	1804	hgsc.bcm.edu	37	7	154561206	154561206	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DPP6-652	NM_001039350	exon9	c.C771T	p.S257S	TGATTCCCGTGTC	.	170.0	66.0	91.0	0.0	.	Atlas-SNP
THSD7A	221981	hgsc.bcm.edu	37	7	11676331	11676331	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	THSD7A-71	NM_015204	exon2	c.449delA	p.E150fs	.	.	69.0	13.0	145.0	0.0	.	Atlas-Indel
NEUROD6	63974	hgsc.bcm.edu	37	7	31377995	31377995	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NEUROD6-92	NM_022728	exon2	c.889delA	p.R297fs	.	.	97.0	22.0	131.0	0.0	.	Atlas-Indel
ZKSCAN5	23660	hgsc.bcm.edu	37	7	99129205	99129205	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZKSCAN5-91	NM_145102	exon7	c.1852delT	p.S618fs	.	.	321.0	90.0	166.0	0.0	.	Atlas-Indel
SPDYE6	729597	hgsc.bcm.edu	37	7	101991206	101991206	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SPDYE6-1	NM_001146210	exon5	c.718delT	p.S240fs	.	.	104.0	64.0	61.0	0.0	.	Atlas-Indel
HDAC9	9734	hgsc.bcm.edu	37	7	18869083	18869083	+	Splice_Site	DEL	G	G	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HDAC9-227	NM_178423	exon19	c.2370-2G>-	.	.	.	33.0	11.0	56.0	0.0	.	Pindel
MGAM	8972	hgsc.bcm.edu	37	7	141759759	141759759	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MGAM-70	NM_004668	exon33	c.4051delT	p.W1351fs	.	.	369.0	59.0	254.0	0.0	.	Pindel
MYOM2	9172	hgsc.bcm.edu	37	8	2090321	2090321	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYOM2-95	NM_003970	exon35	c.G4023T	p.K1341N	AGAGAAGAGTAAG	.	117.0	31.0	136.0	0.0	.	Atlas-SNP
CSMD1	64478	hgsc.bcm.edu	37	8	2800005	2800005	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CSMD1-86	NM_033225	exon69	c.C10524A	p.L3508L	TTTGTAGAGGTAA	.	32.0	8.0	69.0	0.0	.	Atlas-SNP
CSMD1	64478	hgsc.bcm.edu	37	8	2910065	2910065	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CSMD1-86	NM_033225	exon50	c.C7579A	p.L2527I	ATTCAAGCTTGAA	.	117.0	24.0	160.0	0.0	.	Atlas-SNP
AGPAT5	55326	hgsc.bcm.edu	37	8	6599206	6599206	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	AGPAT5-90	NM_018361	exon5	c.G520A	p.G174S	CCAGAAGGTACAA	.	55.0	21.0	76.0	0.0	.	Atlas-SNP
TNKS	8658	hgsc.bcm.edu	37	8	9620743	9620743	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TNKS-660	NM_003747	exon22	c.G3361T	p.V1121L	CAGTCAGTGGAAG	.	47.0	24.0	25.0	0.0	.	Atlas-SNP
PRSS55	203074	hgsc.bcm.edu	37	8	10389053	10389053	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PRSS55-91	NM_001197020	exon3	c.C596G	p.A199G	CCAATGCTGGTAT	.	62.0	30.0	62.0	0.0	.	Atlas-SNP
GATA4	2626	hgsc.bcm.edu	37	8	11607705	11607705	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GATA4-90	NM_002052	exon4	c.C869A	p.P290H	GCGAGCCTGTGTG	.	78.0	9.0	46.0	0.0	.	Atlas-SNP
PCM1	5108	hgsc.bcm.edu	37	8	17796410	17796410	+	Silent	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCM1-742	NM_006197	exon5	c.A504T	p.S168S	TGGATCAGCACAG	.	115.0	33.0	160.0	0.0	.	Atlas-SNP
NAT2	10	hgsc.bcm.edu	37	8	18258377	18258377	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NAT2-516	NM_000015	exon2	c.T864A	p.L288L	ATCCCTTACTATT	.	30.0	8.0	33.0	0.0	.	Atlas-SNP
DOK2	9046	hgsc.bcm.edu	37	8	21769421	21769421	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DOK2-226	NM_003974	exon3	c.G424A	p.A142T	TGACTGCGCTGCT	.	39.0	9.0	51.0	0.0	.	Atlas-SNP
XPO7	23039	hgsc.bcm.edu	37	8	21842176	21842176	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	XPO7-273	NM_015024	exon12	c.C1297G	p.L433V	GATCCCCTGGAGG	.	41.0	14.0	47.0	0.0	.	Atlas-SNP
PIWIL2	55124	hgsc.bcm.edu	37	8	22147806	22147806	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PIWIL2-91	NM_018068	exon10	c.G1128T	p.L376L	CTTCCTGCTAGCT	.	121.0	40.0	117.0	0.0	.	Atlas-SNP
LOXL2	4017	hgsc.bcm.edu	37	8	23179795	23179795	+	Splice_Site	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LOXL2-272	NM_002318	exon8	c.1151-1G>A	.	CGATCCCTGCAAG	.	111.0	33.0	115.0	0.0	.	Atlas-SNP
NKX3-1	4824	hgsc.bcm.edu	37	8	23538992	23538992	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NKX3-1-90	NM_006167	exon2	c.G447T	p.L149L	GGCCGACAGGTAC	.	64.0	21.0	81.0	0.0	.	Atlas-SNP
NKX2-6	137814	hgsc.bcm.edu	37	8	23560030	23560030	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NKX2-6-68	NM_001136271	exon2	c.C840A	p.H280Q	GCCACCGTGTCCG	.	68.0	19.0	16.0	0.0	.	Atlas-SNP
NEFL	4747	hgsc.bcm.edu	37	8	24813479	24813479	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NEFL-24	NM_006158	exon1	c.G551T	p.S184I	TCGCGGCTCAGCA	.	40.0	12.0	6.0	0.0	.	Atlas-SNP
DOCK5	80005	hgsc.bcm.edu	37	8	25101270	25101270	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DOCK5-71	NM_024940	exon2	c.G124T	p.E42X	ATGTACGAGGGTA	.	55.0	18.0	41.0	0.0	.	Atlas-SNP
SCARA3	51435	hgsc.bcm.edu	37	8	27516983	27516983	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SCARA3-228	NM_182826	exon5	c.C1296T	p.S432S	CCTCTCCATGATC	.	93.0	17.0	107.0	0.0	.	Atlas-SNP
ESCO2	157570	hgsc.bcm.edu	37	8	27646479	27646479	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ESCO2-90	NM_001017420	exon7	c.A1247T	p.E416V	TTCTGGAAGGAAT	.	59.0	17.0	83.0	0.0	.	Atlas-SNP
NUGGC	389643	hgsc.bcm.edu	37	8	27898604	27898604	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001010906	exon13	c.G1575T	p.R525S	AGAAGTCCTGGCG	.	68.0	23.0	100.0	0.0	.	Atlas-SNP
PURG	29942	hgsc.bcm.edu	37	8	30889911	30889911	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PURG-131	NM_001015508	exon1	c.G388T	p.G130C	TCAGGCCCAGGTG	.	39.0	16.0	101.0	0.0	.	Atlas-SNP
PPAPDC1B	84513	hgsc.bcm.edu	37	8	38123741	38123741	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_032483	exon6	c.G552T	p.R184S	ACAGAACCTCCAA	.	333.0	58.0	403.0	0.0	.	Atlas-SNP
ADAM9	8754	hgsc.bcm.edu	37	8	38880770	38880770	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADAM9-227	NM_003816	exon9	c.G840T	p.V280V	TGATGTGCTGGGG	.	184.0	81.0	130.0	0.0	.	Atlas-SNP
KAT6A	7994	hgsc.bcm.edu	37	8	41790513	41790513	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001099413	exon18	c.G5225A	p.G1742D	TAGCTGCCGGCAC	.	92.0	37.0	126.0	0.0	.	Atlas-SNP
PXDNL	137902	hgsc.bcm.edu	37	8	52233364	52233364	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PXDNL-70	NM_144651	exon22	c.T4240G	p.C1414G	GAGTGCAGTCTTC	.	104.0	52.0	69.0	0.0	.	Atlas-SNP
XKR4	114786	hgsc.bcm.edu	37	8	56435991	56435991	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	XKR4-92	NM_052898	exon3	c.G1158T	p.R386S	CGCCAGGGTCATC	.	270.0	115.0	186.0	0.0	.	Atlas-SNP
TOX	9760	hgsc.bcm.edu	37	8	59750748	59750748	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TOX-227	NM_014729	exon5	c.T816A	p.F272L	ATCACGAAAGAAT	.	164.0	73.0	136.0	0.0	.	Atlas-SNP
CHD7	55636	hgsc.bcm.edu	37	8	61654436	61654436	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CHD7-141	NM_017780	exon2	c.G445T	p.A149S	CCCAGGGCTGTTC	.	231.0	116.0	129.0	0.0	.	Atlas-SNP
CHD7	55636	hgsc.bcm.edu	37	8	61765660	61765660	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CHD7-141	NM_017780	exon31	c.G6376C	p.D2126H	TTCTTGGATGCAC	.	249.0	110.0	181.0	0.0	.	Atlas-SNP
PPP1R42	286187	hgsc.bcm.edu	37	8	67926709	67926709	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001013626	exon3	c.G248C	p.C83S	GAAATACAATTGT	.	81.0	25.0	53.0	0.0	.	Atlas-SNP
PREX2	80243	hgsc.bcm.edu	37	8	69069640	69069640	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PREX2-390	NM_024870	exon35	c.G4315T	p.E1439X	TCACTGGAAAAGG	.	295.0	94.0	208.0	0.0	.	Atlas-SNP
KCNB2	9312	hgsc.bcm.edu	37	8	73480116	73480116	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KCNB2-158	NM_004770	exon2	c.G147T	p.L49L	AGTCCTGTGGAGA	.	199.0	59.0	168.0	0.0	.	Atlas-SNP
ZFHX4	79776	hgsc.bcm.edu	37	8	77618388	77618388	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZFHX4-98	NM_024721	exon2	c.G2065T	p.G689C	GCCCGGGGTGAGA	.	119.0	73.0	119.0	0.0	.	Atlas-SNP
ZFHX4	79776	hgsc.bcm.edu	37	8	77776722	77776722	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZFHX4-98	NM_024721	exon11	c.C10772G	p.S3591C	ATAATTCTTTGGA	.	262.0	38.0	178.0	0.0	.	Atlas-SNP
ZBTB10	65986	hgsc.bcm.edu	37	8	81412557	81412557	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZBTB10-522	NM_023929	exon2	c.G1801T	p.V601L	TGCTCAGTAATGC	.	143.0	72.0	131.0	0.0	.	Atlas-SNP
PMP2	5375	hgsc.bcm.edu	37	8	82359617	82359617	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PMP2-90	NM_002677	exon1	c.G5A	p.S2N	TTGTTGCTCATCG	.	122.0	37.0	110.0	0.0	.	Atlas-SNP
CA13	377677	hgsc.bcm.edu	37	8	86162997	86162997	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CA13-90	NM_198584	exon2	c.T66A	p.P22P	TTTCCCTATTGCT	.	234.0	104.0	183.0	0.0	.	Atlas-SNP
DCAF4L2	138009	hgsc.bcm.edu	37	8	88885067	88885067	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DCAF4L2-91	NM_152418	exon1	c.C1133A	p.A378E	CCTGGTGCTCCTC	.	91.0	32.0	68.0	0.0	.	Atlas-SNP
TMEM55A	55529	hgsc.bcm.edu	37	8	92008967	92008967	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TMEM55A-90	NM_018710	exon6	c.C545G	p.S182X	CCCACTGAGGAGC	.	216.0	97.0	161.0	0.0	.	Atlas-SNP
LRRC69	100130742	hgsc.bcm.edu	37	8	92145519	92145519	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001129890	exon4	c.G565T	p.G189X	AACATTGGAGTTT	.	62.0	28.0	49.0	0.0	.	Atlas-SNP
RUNX1T1	862	hgsc.bcm.edu	37	8	92972688	92972688	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RUNX1T1-1196	NM_001198626	exon13	c.C1597A	p.R533R	AGTATCGGGCTGT	.	86.0	26.0	72.0	0.0	.	Atlas-SNP
RIMS2	9699	hgsc.bcm.edu	37	8	104948841	104948841	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RIMS2-279	NM_001100117	exon13	c.C2438T	p.T813I	ACCAAACATTCAT	.	106.0	26.0	80.0	0.0	.	Atlas-SNP
RIMS2	9699	hgsc.bcm.edu	37	8	105263996	105263996	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RIMS2-279	NM_001100117	exon24	c.C3998A	p.A1333D	GAAGAGCTTCCCA	.	153.0	49.0	120.0	0.0	.	Atlas-SNP
DPYS	1807	hgsc.bcm.edu	37	8	105405152	105405152	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DPYS-229	NM_001385	exon8	c.G1303A	p.G435R	GCACCCCGTGGCA	.	107.0	11.0	98.0	0.0	.	Atlas-SNP
LRP12	29967	hgsc.bcm.edu	37	8	105511738	105511738	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LRP12-90	NM_013437	exon4	c.T282G	p.D94E	ATCAAAATCCTGA	.	26.0	10.0	19.0	0.0	.	Atlas-SNP
ZFPM2	23414	hgsc.bcm.edu	37	8	106814687	106814687	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZFPM2-139	NM_012082	exon8	c.G2377T	p.G793X	TTTCCAGGAATTG	.	276.0	76.0	231.0	0.0	.	Atlas-SNP
PKHD1L1	93035	hgsc.bcm.edu	37	8	110464351	110464351	+	Splice_Site	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PKHD1L1-145	NM_177531	exon42	c.6351-2A>T	.	TTTTACAGTGAAA	.	126.0	64.0	121.0	0.0	.	Atlas-SNP
PKHD1L1	93035	hgsc.bcm.edu	37	8	110502235	110502235	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PKHD1L1-145	NM_177531	exon60	c.G9935T	p.R3312M	GCTTCAGGGATAG	.	260.0	71.0	181.0	0.0	.	Atlas-SNP
CSMD3	114788	hgsc.bcm.edu	37	8	113516042	113516042	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CSMD3-1132	NM_198123	exon30	c.C5060A	p.T1687N	AATCCAGTGTAAC	.	106.0	48.0	78.0	0.0	.	Atlas-SNP
CSMD3	114788	hgsc.bcm.edu	37	8	114326847	114326847	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CSMD3-1132	NM_198123	exon2	c.C354A	p.Y118X	TGATAAGTAGTCG	.	151.0	61.0	110.0	0.0	.	Atlas-SNP
CSMD3	114788	hgsc.bcm.edu	37	8	114449071	114449071	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CSMD3-1132	NM_198123	exon1	c.C13A	p.R5S	CTTTGCGGATCCC	.	74.0	24.0	59.0	0.0	.	Atlas-SNP
SLC30A8	169026	hgsc.bcm.edu	37	8	118183272	118183272	+	Splice_Site	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC30A8-229	NM_001172811	exon9	c.683-1G>C	.	TTGTCAGGTGTGC	.	172.0	68.0	128.0	0.0	.	Atlas-SNP
MAL2	114569	hgsc.bcm.edu	37	8	120252405	120252405	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_052886	exon4	c.G304A	p.D102N	TTTTAGGATTTTG	.	24.0	8.0	18.0	0.0	.	Atlas-SNP
MAL2	114569	hgsc.bcm.edu	37	8	120252497	120252497	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_052886	exon4	c.T396C	p.N132N	TTGCAATACAACC	.	57.0	13.0	38.0	0.0	.	Atlas-SNP
TMEM65	157378	hgsc.bcm.edu	37	8	125339634	125339634	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TMEM65-68	NM_194291	exon3	c.A378T	p.I126I	AAACCCTATGAAA	.	190.0	51.0	156.0	0.0	.	Atlas-SNP
POU5F1B	5462	hgsc.bcm.edu	37	8	128428183	128428183	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001159542	exon1	c.G72T	p.G24G	ATGGGGGGCGGAG	.	60.0	20.0	49.0	0.0	.	Atlas-SNP
POU5F1B	5462	hgsc.bcm.edu	37	8	128428187	128428187	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001159542	exon1	c.G76C	p.E26Q	GGGGCGGAGCCGG	.	61.0	23.0	52.0	0.0	.	Atlas-SNP
ADCY8	114	hgsc.bcm.edu	37	8	131964240	131964240	+	Missense_Mutation	SNP	C	C	A	rs138524416	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADCY8-157	NM_001115	exon3	c.G1115T	p.R372L	ACGAGCCGCTCCT	.	216.0	59.0	150.0	0.0	C|1.000;T|0.000	Atlas-SNP
HHLA1	10086	hgsc.bcm.edu	37	8	133090001	133090001	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001145095	exon11	c.C1143A	p.G381G	TGGGCTGCCAGGT	.	130.0	60.0	96.0	0.0	.	Atlas-SNP
KCNQ3	3786	hgsc.bcm.edu	37	8	133187720	133187720	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KCNQ3-138	NM_001204824	exon5	c.G553T	p.D185Y	GGGCATCTGCATA	.	228.0	108.0	166.0	0.0	.	Atlas-SNP
SLA	6503	hgsc.bcm.edu	37	8	134072520	134072520	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLA-279	NM_006748	exon1	c.C6G	p.L2L	TTTAGAGAGCATC	.	173.0	54.0	124.0	0.0	.	Atlas-SNP
TG	7038	hgsc.bcm.edu	37	8	134145773	134145773	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TG-145	NM_003235	exon47	c.C8057A	p.P2686H	CCTGGCCTGACTT	.	169.0	73.0	163.0	0.0	.	Atlas-SNP
FAM135B	51059	hgsc.bcm.edu	37	8	139158277	139158277	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM135B-31	NM_015912	exon15	c.C3465A	p.L1155L	CAGCCGGAGGTCT	.	67.0	25.0	39.0	0.0	.	Atlas-SNP
FAM135B	51059	hgsc.bcm.edu	37	8	139165292	139165292	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM135B-31	NM_015912	exon13	c.G1426T	p.V476F	TTATAACTTCTTC	.	163.0	33.0	138.0	0.0	.	Atlas-SNP
FAM135B	51059	hgsc.bcm.edu	37	8	139190892	139190892	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM135B-31	NM_015912	exon10	c.G915T	p.K305N	CAGATCCTTGCTT	.	235.0	58.0	204.0	0.0	.	Atlas-SNP
COL22A1	169044	hgsc.bcm.edu	37	8	139712358	139712358	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	COL22A1-103	NM_152888	exon32	c.G2589T	p.M863I	TACGGGCATCCGT	.	136.0	47.0	103.0	0.0	.	Atlas-SNP
ARC	23237	hgsc.bcm.edu	37	8	143694448	143694448	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ARC-135	NM_015193	exon1	c.C1185A	p.P395P	CTACTCGGGCTGG	.	143.0	44.0	47.0	0.0	.	Atlas-SNP
TIGD5	84948	hgsc.bcm.edu	37	8	144681841	144681841	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TIGD5-90	NM_032862	exon1	c.G1768T	p.E590X	GCCGGGGAGGCCG	.	166.0	66.0	70.0	0.0	.	Atlas-SNP
EPPK1	83481	hgsc.bcm.edu	37	8	144940543	144940543	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EPPK1-25	NM_031308	exon1	c.C6879T	p.G2293G	CTCGCCGCCCACC	.	256.0	25.0	27.0	0.0	.	Atlas-SNP
EPPK1	83481	hgsc.bcm.edu	37	8	144941957	144941957	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EPPK1-25	NM_031308	exon1	c.G5465T	p.G1822V	AGGCCCCCACTCT	.	160.0	57.0	110.0	0.0	.	Atlas-SNP
GPAA1	8733	hgsc.bcm.edu	37	8	145140943	145140943	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPAA1-90	NM_003801	exon12	c.C1781A	p.T594N	ACCACACCTACGG	.	98.0	12.0	66.0	0.0	.	Atlas-SNP
RP1L1	94137	hgsc.bcm.edu	37	8	10467199	10467199	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RP1L1-139	NM_178857	exon4	c.4410delC	p.G1470fs	.	.	60.0	19.0	30.0	0.0	.	Atlas-Indel
ZFHX4	79776	hgsc.bcm.edu	37	8	77620165	77620165	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZFHX4-98	NM_024721	exon3	c.2974delG	p.A992fs	.	.	290.0	69.0	188.0	0.0	.	Atlas-Indel
FBXO43	286151	hgsc.bcm.edu	37	8	101154328	101154328	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FBXO43-226	NM_001029860	exon2	c.155delA	p.D52fs	.	.	104.0	35.0	56.0	0.0	.	Atlas-Indel
POU5F1B	5462	hgsc.bcm.edu	37	8	128428179	128428179	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001159542	exon1	c.67delT	p.W23fs	.	.	61.0	19.0	46.0	0.0	.	Atlas-Indel
DMRT3	58524	hgsc.bcm.edu	37	9	990798	990798	+	Missense_Mutation	SNP	G	G	T	rs148970201	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DMRT3-516	NM_021240	exon2	c.G1212T	p.R404S	GCTGAGGTCCCAG	.	98.0	55.0	130.0	0.0	G|0.999;A|0.000	Atlas-SNP
PTPRD	5789	hgsc.bcm.edu	37	9	8518129	8518129	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PTPRD-912	NM_001040712	exon9	c.C1253A	p.P418Q	TCCCTCGGGGCAC	.	138.0	64.0	224.0	0.0	.	Atlas-SNP
PTPRD	5789	hgsc.bcm.edu	37	9	8636699	8636699	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PTPRD-912	NM_001040712	exon2	c.G210T	p.E70D	TAATACCTCAAAT	.	138.0	88.0	213.0	0.0	.	Atlas-SNP
HAUS6	54801	hgsc.bcm.edu	37	9	19063554	19063554	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HAUS6-92	NM_001270890	exon13	c.A1296G	p.S432S	TGAAACTGACTGC	.	139.0	77.0	234.0	0.0	.	Atlas-SNP
CCIN	881	hgsc.bcm.edu	37	9	36170829	36170829	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CCIN-92	NM_005893	exon1	c.G1330T	p.V444L	GTCGGGGTAGTGG	.	156.0	86.0	198.0	0.0	.	Atlas-SNP
KLF9	687	hgsc.bcm.edu	37	9	73027994	73027994	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KLF9-90	NM_001206	exon1	c.G286C	p.D96H	CGCTGTCGGATCC	.	230.0	39.0	205.0	0.0	.	Atlas-SNP
TMEM2	23670	hgsc.bcm.edu	37	9	74349872	74349872	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TMEM2-92	NM_013390	exon6	c.G1243T	p.G415X	TCACTCCATCTAC	.	76.0	20.0	55.0	0.0	.	Atlas-SNP
GDA	9615	hgsc.bcm.edu	37	9	74810477	74810477	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GDA-230	NM_001242505	exon2	c.C185A	p.P62Q	TCAAGCCGTGTGA	.	48.0	14.0	35.0	0.0	.	Atlas-SNP
TRPM6	140803	hgsc.bcm.edu	37	9	77423024	77423024	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TRPM6-335	NM_001177310	exon14	c.G1549T	p.G517C	CTCTACCAATGAG	.	155.0	46.0	139.0	0.0	.	Atlas-SNP
TRPM6	140803	hgsc.bcm.edu	37	9	77431651	77431651	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TRPM6-335	NM_001177310	exon11	c.G1227T	p.L409L	CATTGCCAGATTT	.	50.0	14.0	45.0	0.0	.	Atlas-SNP
PRUNE2	158471	hgsc.bcm.edu	37	9	79320603	79320603	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PRUNE2-157	NM_015225	exon8	c.A6587T	p.N2196I	TCACCGTTTATTT	.	155.0	56.0	141.0	0.0	.	Atlas-SNP
TLE4	7091	hgsc.bcm.edu	37	9	82321726	82321726	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TLE4-524	NM_007005	exon11	c.G848T	p.R283L	AGACACGCCTGCT	.	90.0	30.0	108.0	0.0	.	Atlas-SNP
SPATA31D1	389763	hgsc.bcm.edu	37	9	84607383	84607383	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001001670	exon4	c.C1998A	p.V666V	CAAGGTCCATGTT	.	227.0	78.0	201.0	0.0	.	Atlas-SNP
SPATA31D1	389763	hgsc.bcm.edu	37	9	84607770	84607770	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001001670	exon4	c.G2385T	p.K795N	AGACAAGGATCTG	.	571.0	178.0	505.0	0.0	.	Atlas-SNP
SPATA31D1	389763	hgsc.bcm.edu	37	9	84608098	84608098	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001001670	exon4	c.G2713T	p.A905S	TTGGAAGCCCATA	.	160.0	65.0	172.0	0.0	.	Atlas-SNP
AGTPBP1	23287	hgsc.bcm.edu	37	9	88162051	88162051	+	Silent	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	AGTPBP1-158	NM_015239	exon26	c.T3534A	p.S1178S	TAATTCAGAGTCA	.	130.0	45.0	141.0	0.0	.	Atlas-SNP
DAPK1	1612	hgsc.bcm.edu	37	9	90318057	90318057	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DAPK1-359	NM_004938	exon25	c.G2985T	p.V995V	CGACGTGCAGGAC	.	192.0	69.0	171.0	0.0	.	Atlas-SNP
SYK	6850	hgsc.bcm.edu	37	9	93637019	93637019	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SYK-1402	NM_001174168	exon8	c.G1000C	p.E334Q	CCCGAGGAGATCA	.	108.0	52.0	128.0	0.0	.	Atlas-SNP
NOL8	55035	hgsc.bcm.edu	37	9	95077071	95077071	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NOL8-23	NM_001256394	exon8	c.C1632T	p.S544S	TTCCATGGATATG	.	52.0	25.0	59.0	0.0	.	Atlas-SNP
ECM2	1842	hgsc.bcm.edu	37	9	95263198	95263198	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ECM2-131	NM_001393	exon9	c.C1742A	p.P581Q	AGGCCTGGTTCCA	.	215.0	58.0	231.0	0.0	.	Atlas-SNP
HEMGN	55363	hgsc.bcm.edu	37	9	100693484	100693484	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HEMGN-91	NM_197978	exon3	c.C193A	p.Q65K	TCTGCTGCTTGCG	.	27.0	6.0	18.0	0.0	.	Atlas-SNP
COL15A1	1306	hgsc.bcm.edu	37	9	101749611	101749611	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	COL15A1-96	NM_001855	exon4	c.C684A	p.P228P	CGACCCCAGGACT	.	80.0	30.0	62.0	0.0	.	Atlas-SNP
GRIN3A	116443	hgsc.bcm.edu	37	9	104390541	104390541	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GRIN3A-96	NM_133445	exon4	c.T2495A	p.L832Q	CACTTCAGATACT	.	42.0	4.0	39.0	0.0	.	Atlas-SNP
GRIN3A	116443	hgsc.bcm.edu	37	9	104432880	104432880	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GRIN3A-96	NM_133445	exon3	c.A1814T	p.Y605F	GCTCCATACTTTC	.	108.0	33.0	138.0	0.0	.	Atlas-SNP
OR13C8	138802	hgsc.bcm.edu	37	9	107331611	107331611	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR13C8-70	NM_001004483	exon1	c.C163A	p.L55M	TCTCACCTGCACA	.	96.0	30.0	97.0	0.0	.	Atlas-SNP
SVEP1	79987	hgsc.bcm.edu	37	9	113169869	113169869	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SVEP1-75	NM_153366	exon38	c.C8011A	p.H2671N	ATGAATGTGTAGC	.	116.0	35.0	96.0	0.0	.	Atlas-SNP
SVEP1	79987	hgsc.bcm.edu	37	9	113265477	113265477	+	Missense_Mutation	SNP	G	G	T	rs200840190	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SVEP1-75	NM_153366	exon6	c.C1324A	p.R442S	GCTGGCGGAGATG	.	251.0	85.0	209.0	0.0	G|0.999;A|0.001	Atlas-SNP
MUSK	4593	hgsc.bcm.edu	37	9	113547978	113547978	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MUSK-1379	NM_001166280	exon11	c.T1500A	p.F500L	AGCGTTTGGAAGG	.	141.0	68.0	110.0	0.0	.	Atlas-SNP
FKBP15	23307	hgsc.bcm.edu	37	9	115969505	115969505	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FKBP15-25	NM_015258	exon3	c.C241T	p.H81Y	ATGCATGGACTGC	.	191.0	83.0	136.0	0.0	.	Atlas-SNP
AKNA	80709	hgsc.bcm.edu	37	9	117143414	117143414	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	AKNA-94	NM_030767	exon2	c.C200T	p.P67L	AGGGGCGGCAGGT	.	114.0	51.0	64.0	0.0	.	Atlas-SNP
PAPPA	5069	hgsc.bcm.edu	37	9	118949703	118949703	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PAPPA-77	NM_002581	exon2	c.G686C	p.S229T	TATTCAGCCCACT	.	93.0	12.0	86.0	0.0	.	Atlas-SNP
PAPPA	5069	hgsc.bcm.edu	37	9	119097159	119097159	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PAPPA-77	NM_002581	exon13	c.C3417A	p.C1139X	GAGCTGCAGGAAC	.	129.0	27.0	106.0	0.0	.	Atlas-SNP
TLR4	7099	hgsc.bcm.edu	37	9	120475502	120475502	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TLR4-577	NM_138557	exon2	c.G496C	p.A166P	GGGAATGCTTTTT	.	128.0	35.0	137.0	0.0	.	Atlas-SNP
MORN5	254956	hgsc.bcm.edu	37	9	124936842	124936842	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MORN5-90	NM_198469	exon4	c.C375A	p.D125E	TGGAGACGGCTTC	.	106.0	46.0	124.0	0.0	.	Atlas-SNP
LHX6	26468	hgsc.bcm.edu	37	9	124971944	124971944	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LHX6-90	NM_014368	exon9	c.C1107A	p.P369P	GTGGACGGGGGGT	.	201.0	91.0	159.0	0.0	.	Atlas-SNP
PTGS1	5742	hgsc.bcm.edu	37	9	125154577	125154577	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PTGS1-228	NM_001271164	exon10	c.G1410T	p.G470G	CTTTGGGGAGAGT	.	178.0	67.0	129.0	0.0	.	Atlas-SNP
OR1K1	392392	hgsc.bcm.edu	37	9	125562551	125562551	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR1K1-69	NM_080859	exon1	c.C150A	p.I50I	TGCCATCCAGGCC	.	255.0	102.0	161.0	0.0	.	Atlas-SNP
ZBTB26	57684	hgsc.bcm.edu	37	9	125681181	125681181	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZBTB26-90	NM_020924	exon2	c.C1033T	p.L345F	GGTTAAGATGATC	.	76.0	24.0	95.0	0.0	.	Atlas-SNP
OLFML2A	169611	hgsc.bcm.edu	37	9	127549290	127549290	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OLFML2A-68	NM_182487	exon2	c.G127T	p.E43X	ACCTCGGAGGGCT	.	48.0	18.0	28.0	0.0	.	Atlas-SNP
GOLGA1	2800	hgsc.bcm.edu	37	9	127670717	127670717	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GOLGA1-91	NM_002077	exon12	c.G1004A	p.R335K	TGTTGTCTGGTAT	.	96.0	34.0	78.0	0.0	.	Atlas-SNP
SPTAN1	6709	hgsc.bcm.edu	37	9	131395498	131395498	+	Missense_Mutation	SNP	G	G	A	rs141980692	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SPTAN1-158	NM_001195532	exon55	c.G7244A	p.R2415Q	TGACCCGGGAACA	.	97.0	21.0	77.0	0.0	G|0.999;A|0.001	Atlas-SNP
ZER1	10444	hgsc.bcm.edu	37	9	131513410	131513410	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZER1-91	NM_006336	exon7	c.G1176T	p.R392R	CAGGGCCCGCAGC	.	150.0	50.0	85.0	0.0	.	Atlas-SNP
ASS1	445	hgsc.bcm.edu	37	9	133342123	133342123	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ASS1-91	NM_000050	exon7	c.C432T	p.P144P	TGCTCCCTGGAGG	.	130.0	44.0	100.0	0.0	.	Atlas-SNP
SETX	23064	hgsc.bcm.edu	37	9	135140278	135140278	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SETX-93	NM_015046	exon26	c.A7382T	p.K2461M	AGAATCTTCACTG	.	124.0	57.0	103.0	0.0	.	Atlas-SNP
SETX	23064	hgsc.bcm.edu	37	9	135210060	135210060	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SETX-93	NM_015046	exon7	c.T773G	p.L258W	GAGCCCAACAACA	.	154.0	25.0	129.0	0.0	.	Atlas-SNP
DDX31	64794	hgsc.bcm.edu	37	9	135505693	135505693	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DDX31-226	NM_022779	exon16	c.C1904T	p.S635L	GCCTCCGAAGGAG	.	84.0	14.0	74.0	0.0	.	Atlas-SNP
COL5A1	1289	hgsc.bcm.edu	37	9	137658845	137658845	+	Splice_Site	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	COL5A1-524	NM_000093	exon23	c.2134-1G>T	.	CCTGTAGGGTCCC	.	161.0	54.0	130.0	0.0	.	Atlas-SNP
SOHLH1	402381	hgsc.bcm.edu	37	9	138585537	138585537	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SOHLH1-135	NM_001101677	exon8	c.G1070A	p.S357N	AGAGGGCTGTCCT	.	250.0	83.0	195.0	0.0	.	Atlas-SNP
KCNT1	57582	hgsc.bcm.edu	37	9	138660771	138660771	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KCNT1-137	NM_020822	exon15	c.G1498T	p.V500F	TTTCACGTCAAGT	.	65.0	15.0	43.0	0.0	.	Atlas-SNP
NOTCH1	4851	hgsc.bcm.edu	37	9	139391450	139391450	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NOTCH1-5459	NM_017617	exon34	c.G6741C	p.L2247L	CACGTTCAGGTGC	.	171.0	44.0	14.0	0.0	.	Atlas-SNP
LCN6	158062	hgsc.bcm.edu	37	9	139639178	139639178	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LCN6-90	NM_198946	exon5	c.C428G	p.A143G	TGGCTGGCTGTCT	.	134.0	53.0	120.0	0.0	.	Atlas-SNP
SLC34A3	142680	hgsc.bcm.edu	37	9	140126591	140126591	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC34A3-90	NM_001177316	exon3	c.G153T	p.K51N	GCTGAAGGACACA	.	165.0	64.0	143.0	0.0	.	Atlas-SNP
RORB	6096	hgsc.bcm.edu	37	9	77249546	77249546	+	Splice_Site	DEL	G	G	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RORB-229	NM_006914	exon3	c.94-2G>-	.	.	.	45.0	15.0	45.0	0.0	.	Atlas-Indel
FAM22G	441457	hgsc.bcm.edu	37	9	99694487	99694487	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM22G-69	NM_001045477	exon2	c.499delG	p.A167fs	.	.	710.0	165.0	391.0	0.0	.	Atlas-Indel
ADAMTS13	11093	hgsc.bcm.edu	37	9	136324173	136324173	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADAMTS13-229	NM_139026	exon29	c.3893delA	p.Q1298fs	.	.	228.0	46.0	176.0	0.0	.	Pindel
PPP2R3B	28227	hgsc.bcm.edu	37	X	322316	322316	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PPP2R3B-136	NM_013239	exon2	c.C334T	p.R112W	CTTTCCGTGTCTG	.	278.0	154.0	312.0	1.0	.	Atlas-SNP
ASMTL	8623	hgsc.bcm.edu	37	X	1571720	1571720	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ASMTL-62	NM_004192	exon1	c.C14T	p.P5L	ATCACCGGGCACA	.	48.0	28.0	6.0	0.0	.	Atlas-SNP
MXRA5	25878	hgsc.bcm.edu	37	X	3241638	3241638	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MXRA5-136	NM_015419	exon5	c.G2088C	p.V696V	ATCCTCCACGATG	.	73.0	45.0	91.0	0.0	.	Atlas-SNP
MXRA5	25878	hgsc.bcm.edu	37	X	3248114	3248114	+	Silent	SNP	C	C	A	rs200950732	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MXRA5-136	NM_015419	exon4	c.G654T	p.P218P	GGTCCACGGATTT	.	76.0	38.0	132.0	0.0	.	Atlas-SNP
FAM9A	171482	hgsc.bcm.edu	37	X	8763196	8763196	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM9A-130	NM_174951	exon7	c.G754T	p.G252X	CTCCTCCTTCTTC	.	48.0	32.0	59.0	0.0	.	Atlas-SNP
AMELX	265	hgsc.bcm.edu	37	X	11316882	11316882	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	AMELX-130	NM_001142	exon5	c.C359T	p.P120L	ACCTCCCTCCGCC	.	162.0	77.0	153.0	0.0	.	Atlas-SNP
ARHGAP6	395	hgsc.bcm.edu	37	X	11682852	11682852	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ARHGAP6-227	NM_013427	exon1	c.C97A	p.R33S	TCTGGCGCAGCTT	.	44.0	13.0	32.0	0.0	.	Atlas-SNP
FAM9C	171484	hgsc.bcm.edu	37	X	13056583	13056583	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM9C-130	NM_174901	exon7	c.G478A	p.G160R	CTTTCCCATCTTG	.	17.0	8.0	35.0	0.0	.	Atlas-SNP
ZRSR2	8233	hgsc.bcm.edu	37	X	15841143	15841143	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZRSR2-133	NM_005089	exon11	c.A1227G	p.K409K	TCACAAACGCACA	.	214.0	125.0	210.0	1.0	.	Atlas-SNP
GRPR	2925	hgsc.bcm.edu	37	X	16168476	16168476	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GRPR-565	NM_005314	exon2	c.G462A	p.L154L	TGCCCTGATGAAG	.	107.0	60.0	164.0	0.0	.	Atlas-SNP
PHKA2	5256	hgsc.bcm.edu	37	X	18911675	18911675	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PHKA2-131	NM_000292	exon33	c.G3636T	p.M1212I	GTAGGTCATCGTC	.	230.0	103.0	155.0	0.0	.	Atlas-SNP
PHKA2	5256	hgsc.bcm.edu	37	X	18942242	18942242	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PHKA2-131	NM_000292	exon17	c.C1725T	p.G575G	GTCTGAGCCATCA	.	352.0	133.0	286.0	1.0	.	Atlas-SNP
GPR64	10149	hgsc.bcm.edu	37	X	19046318	19046318	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPR64-130	NM_001184837	exon8	c.G307T	p.E103X	TGCTTTCTTTATC	.	147.0	46.0	153.0	0.0	.	Atlas-SNP
SUPT20HL1	100130302	hgsc.bcm.edu	37	X	24383063	24383063	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001136234	exon1	c.C2186A	p.A729E	GTTCCGCACTAGG	.	320.0	170.0	475.0	2.0	.	Atlas-SNP
SUPT20HL1	100130302	hgsc.bcm.edu	37	X	24383065	24383065	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001136234	exon1	c.C2188A	p.L730I	TCCGCACTAGGTT	.	320.0	171.0	479.0	1.0	.	Atlas-SNP
MAGEB6	158809	hgsc.bcm.edu	37	X	26212653	26212653	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MAGEB6-133	NM_173523	exon2	c.G690T	p.K230N	GTACAAGCCCTAC	.	126.0	66.0	208.0	0.0	.	Atlas-SNP
MAGEB6	158809	hgsc.bcm.edu	37	X	26212780	26212780	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MAGEB6-133	NM_173523	exon2	c.G817T	p.E273X	CCCAGTGAAGGAA	.	123.0	64.0	167.0	0.0	.	Atlas-SNP
DCAF8L1	139425	hgsc.bcm.edu	37	X	27998833	27998833	+	Missense_Mutation	SNP	G	G	T	rs148833488	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DCAF8L1-112	NM_001017930	exon1	c.C619A	p.R207S	TGCCACGCTGGTT	.	184.0	93.0	238.0	0.0	G|1.000;A|0.000	Atlas-SNP
MAGEB1	4112	hgsc.bcm.edu	37	X	30268640	30268640	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MAGEB1-130	NM_002363	exon4	c.T30A	p.R10R	GCTCCGTGCTCGT	.	271.0	143.0	377.0	0.0	.	Atlas-SNP
TAB3	257397	hgsc.bcm.edu	37	X	30849617	30849617	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TAB3-131	NM_152787	exon11	c.G2066T	p.C689F	CTATCACAATTCC	.	164.0	32.0	164.0	0.0	.	Atlas-SNP
FTHL17	53940	hgsc.bcm.edu	37	X	31090008	31090008	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FTHL17-130	NM_031894	exon1	c.C63G	p.I21M	GCTGTTGATGGCG	.	566.0	131.0	305.0	0.0	.	Atlas-SNP
DMD	1756	hgsc.bcm.edu	37	X	31222119	31222119	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DMD-265	NM_004015	exon6	c.G562A	p.G188S	TACTGCCCCCAAA	.	220.0	50.0	234.0	0.0	.	Atlas-SNP
DMD	1756	hgsc.bcm.edu	37	X	31514988	31514988	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DMD-265	NM_004021	exon14	c.C1084A	p.Q362K	TCAGCTGTAGCCA	.	199.0	93.0	219.0	1.0	.	Atlas-SNP
DMD	1756	hgsc.bcm.edu	37	X	32360319	32360319	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DMD-265	NM_004011	exon13	c.G1797T	p.G599G	TGCGGCCCCATCC	.	179.0	47.0	195.0	0.0	.	Atlas-SNP
DMD	1756	hgsc.bcm.edu	37	X	32360320	32360320	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DMD-265	NM_004011	exon13	c.G1796T	p.G599V	GCGGCCCCATCCT	.	180.0	47.0	195.0	0.0	.	Atlas-SNP
CXorf22	170063	hgsc.bcm.edu	37	X	35971805	35971805	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CXorf22-131	NM_152632	exon7	c.T1143G	p.F381L	TGGATTTTTGAGA	.	163.0	36.0	247.0	0.0	.	Atlas-SNP
FAM47C	442444	hgsc.bcm.edu	37	X	37027035	37027035	+	Silent	SNP	G	G	T	rs61730915	byfrequency;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM47C-111	NM_001013736	exon1	c.G552T	p.G184G	CTGTGGGGAATTC	.	71.0	49.0	93.0	0.0	G|0.992;A|0.008	Atlas-SNP
USP9X	8239	hgsc.bcm.edu	37	X	41025466	41025466	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	USP9X-563	NM_001039590	exon16	c.G2327C	p.R776T	TTTGGAGGGTAAG	.	48.0	30.0	48.0	0.0	.	Atlas-SNP
SLC9A7	84679	hgsc.bcm.edu	37	X	46541866	46541866	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC9A7-132	NM_001257291	exon2	c.G430T	p.V144L	CATTCACTAATAA	.	133.0	22.0	152.0	0.0	.	Atlas-SNP
NDUFB11	54539	hgsc.bcm.edu	37	X	47002022	47002022	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NDUFB11-130	NM_019056	exon2	c.C329A	p.P110H	TAGTCAGGCAGAT	.	202.0	48.0	221.0	0.0	.	Atlas-SNP
NDUFB11	54539	hgsc.bcm.edu	37	X	47002127	47002127	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NDUFB11-130	NM_019056	exon2	c.G224T	p.G75V	TCATAACCATGGG	.	253.0	48.0	322.0	0.0	.	Atlas-SNP
ZNF81	347344	hgsc.bcm.edu	37	X	47705685	47705685	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF81-130	NM_007137	exon2	c.G19T	p.A7S	GAGGACGCTCCCC	.	89.0	24.0	82.0	0.0	.	Atlas-SNP
ZNF630	57232	hgsc.bcm.edu	37	X	47919260	47919260	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF630-131	NM_001190255	exon5	c.T529A	p.L177I	TTAGTAAGTCTGA	.	34.0	10.0	43.0	0.0	.	Atlas-SNP
WAS	7454	hgsc.bcm.edu	37	X	48547809	48547809	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	WAS-563	NM_000377	exon11	c.C1439T	p.A480V	GCAGAGCCATCCA	.	342.0	75.0	360.0	0.0	.	Atlas-SNP
HDAC6	10013	hgsc.bcm.edu	37	X	48678641	48678641	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HDAC6-230	NM_006044	exon23	c.C2316A	p.G772G	CAGTGGCCGCATT	.	80.0	15.0	77.0	0.0	.	Atlas-SNP
GRIPAP1	56850	hgsc.bcm.edu	37	X	48853737	48853737	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GRIPAP1-227	NM_020137	exon5	c.G231C	p.M77I	CTGCAGCATCTCA	.	51.0	13.0	36.0	0.0	.	Atlas-SNP
PRAF2	11230	hgsc.bcm.edu	37	X	48929617	48929617	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PRAF2-130	NM_007213	exon3	c.G448C	p.E150Q	TGTTCTCAATCTT	.	73.0	19.0	66.0	0.0	.	Atlas-SNP
WDR45	11152	hgsc.bcm.edu	37	X	48935536	48935536	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	WDR45-131	NM_001029896	exon3	c.C90T	p.R30R	GTAGATGCGCACA	.	91.0	19.0	93.0	0.0	.	Atlas-SNP
CACNA1F	778	hgsc.bcm.edu	37	X	49074374	49074374	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CACNA1F-176	NM_005183	exon25	c.G3052A	p.G1018R	GCACCCCGATGCA	.	152.0	46.0	155.0	0.0	.	Atlas-SNP
PPP1R3F	89801	hgsc.bcm.edu	37	X	49142338	49142338	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PPP1R3F-229	NM_033215	exon4	c.G1186T	p.D396Y	GAAGGTGATGTCC	.	329.0	49.0	260.0	0.0	.	Atlas-SNP
CLCN5	1184	hgsc.bcm.edu	37	X	49851057	49851057	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CLCN5-132	NM_001127899	exon11	c.C1087T	p.R363C	ACTCTACGCTCCA	.	117.0	30.0	100.0	0.0	.	Atlas-SNP
SHROOM4	57477	hgsc.bcm.edu	37	X	50377365	50377365	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SHROOM4-131	NM_020717	exon4	c.C1708A	p.R570R	CACTTCGCCTACC	.	65.0	16.0	87.0	0.0	.	Atlas-SNP
SHROOM4	57477	hgsc.bcm.edu	37	X	50377405	50377405	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SHROOM4-131	NM_020717	exon4	c.G1668C	p.G556G	GCTGTCCCCTTCT	.	97.0	21.0	138.0	0.0	.	Atlas-SNP
GSPT2	23708	hgsc.bcm.edu	37	X	51487049	51487049	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GSPT2-228	NM_018094	exon1	c.T327A	p.P109P	GGCACCTGTGGAA	.	67.0	12.0	28.0	0.0	.	Atlas-SNP
GPR173	54328	hgsc.bcm.edu	37	X	53105990	53105990	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPR173-130	NM_018969	exon2	c.G187T	p.D63Y	CTGCTGGACCTGT	.	121.0	26.0	145.0	0.0	.	Atlas-SNP
IQSEC2	23096	hgsc.bcm.edu	37	X	53278002	53278002	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IQSEC2-178	NM_001111125	exon6	c.G2360T	p.G787V	GCCACTCCCACCG	.	94.0	42.0	76.0	0.0	.	Atlas-SNP
IQSEC2	23096	hgsc.bcm.edu	37	X	53279726	53279726	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IQSEC2-178	NM_001111125	exon5	c.G2032T	p.G678C	TCCGACCCCCAGC	.	68.0	18.0	57.0	0.0	.	Atlas-SNP
IQSEC2	23096	hgsc.bcm.edu	37	X	53279966	53279966	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IQSEC2-178	NM_001111125	exon5	c.C1792G	p.P598A	TAGGAGGCTCAAT	.	115.0	27.0	106.0	0.0	.	Atlas-SNP
HUWE1	10075	hgsc.bcm.edu	37	X	53561133	53561133	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HUWE1-280	NM_031407	exon83	c.G12857A	p.R4286H	AAAGAACGCAATG	.	414.0	97.0	434.0	0.0	.	Atlas-SNP
HUWE1	10075	hgsc.bcm.edu	37	X	53602737	53602737	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HUWE1-280	NM_031407	exon45	c.G5896T	p.D1966Y	TAGGATCAGATTT	.	146.0	26.0	178.0	0.0	.	Atlas-SNP
WNK3	65267	hgsc.bcm.edu	37	X	54228531	54228531	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	WNK3-441	NM_001002838	exon22	c.G4795T	p.D1599Y	TCCAGTCATCCAC	.	105.0	26.0	126.0	0.0	.	Atlas-SNP
WNK3	65267	hgsc.bcm.edu	37	X	54263789	54263789	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	WNK3-441	NM_001002838	exon20	c.G4069C	p.E1357Q	AGGTTTCCTGAAG	.	63.0	6.0	81.0	0.0	.	Atlas-SNP
WNK3	65267	hgsc.bcm.edu	37	X	54263899	54263899	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	WNK3-441	NM_001002838	exon20	c.C3959A	p.S1320Y	TCACTAGAATGGT	.	15.0	5.0	21.0	0.0	.	Atlas-SNP
GNL3L	54552	hgsc.bcm.edu	37	X	54586952	54586952	+	Splice_Site	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GNL3L-131	NM_019067	exon16	c.1667-1G>C	.	TTTGCAGATAAAA	.	106.0	20.0	79.0	0.0	.	Atlas-SNP
ITIH6	347365	hgsc.bcm.edu	37	X	54800536	54800536	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_198510	exon6	c.T881G	p.M294R	CCAAACATGGAGC	.	442.0	81.0	446.0	0.0	.	Atlas-SNP
ITIH6	347365	hgsc.bcm.edu	37	X	54817377	54817377	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_198510	exon4	c.T509A	p.L170X	TTCACCAATTGGC	.	223.0	45.0	217.0	0.0	.	Atlas-SNP
SPIN2B	474343	hgsc.bcm.edu	37	X	57146348	57146348	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SPIN2B-90	NM_001006681	exon2	c.T715A	p.Y239N	TGAAATACACAGA	.	824.0	160.0	973.0	0.0	.	Atlas-SNP
SPIN2B	474343	hgsc.bcm.edu	37	X	57146372	57146372	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SPIN2B-90	NM_001006681	exon2	c.C691A	p.Q231K	CCACTTGGTGAAT	.	771.0	141.0	956.0	0.0	.	Atlas-SNP
HEPH	9843	hgsc.bcm.edu	37	X	65412128	65412128	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HEPH-135	NM_001130860	exon7	c.G1229T	p.R410I	ATTTGAGAGAGCC	.	209.0	110.0	345.0	1.0	.	Atlas-SNP
FAM155B	27112	hgsc.bcm.edu	37	X	68748874	68748874	+	Missense_Mutation	SNP	C	C	G	rs200565192	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM155B-131	NM_015686	exon2	c.C900G	p.S300R	CTTCAGCGTGACC	.	135.0	80.0	204.0	0.0	C|0.999;T|0.001	Atlas-SNP
OTUD6A	139562	hgsc.bcm.edu	37	X	69282886	69282886	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OTUD6A-541	NM_207320	exon1	c.G512T	p.R171L	TGCTGCGCTGCCG	.	269.0	154.0	318.0	0.0	.	Atlas-SNP
GDPD2	54857	hgsc.bcm.edu	37	X	69646560	69646560	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GDPD2-132	NM_001171193	exon6	c.G288A	p.V96V	GCCTGTGGCTGAT	.	217.0	137.0	268.0	0.0	.	Atlas-SNP
OGT	8473	hgsc.bcm.edu	37	X	70776864	70776864	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OGT-113	NM_181673	exon10	c.A1199T	p.D400V	TGCAGGATGTTCA	.	207.0	91.0	320.0	0.0	.	Atlas-SNP
NHSL2	340527	hgsc.bcm.edu	37	X	71354404	71354404	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NHSL2-108	NM_001013627	exon4	c.G610A	p.V204M	CAGGGTGTGAGGG	.	250.0	140.0	342.0	0.0	.	Atlas-SNP
ZCCHC5	203430	hgsc.bcm.edu	37	X	77912640	77912640	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZCCHC5-131	NM_152694	exon2	c.C1278A	p.I426I	GCAGTTGATTGCA	.	157.0	96.0	200.0	0.0	.	Atlas-SNP
TBX22	50945	hgsc.bcm.edu	37	X	79278676	79278676	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	TBX22,NS,carcinoma,+1	TBX22-628	NM_001109878	exon3	c.G293T	p.G98V	TTCAAGGATCTGA	.	190.0	102.0	286.0	2.0	.	Atlas-SNP
BRWD3	254065	hgsc.bcm.edu	37	X	79971694	79971694	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BRWD3-134	NM_153252	exon20	c.G2287T	p.V763F	TTTCAACTGTATA	.	59.0	20.0	79.0	0.0	.	Atlas-SNP
KLHL4	56062	hgsc.bcm.edu	37	X	86890618	86890618	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KLHL4-133	NM_057162	exon9	c.T1768A	p.F590I	GAATACTTTGACC	.	99.0	26.0	174.0	0.0	.	Atlas-SNP
PCDH11X	27328	hgsc.bcm.edu	37	X	91132646	91132646	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDH11X-193	NM_032968	exon2	c.T1407A	p.S469S	CCAGTCTTTCGTA	.	283.0	165.0	448.0	2.0	.	Atlas-SNP
PCDH11X	27328	hgsc.bcm.edu	37	X	91133492	91133492	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDH11X-193	NM_032968	exon2	c.C2253G	p.V751V	GTTGGTCAAAGCT	.	519.0	292.0	782.0	0.0	.	Atlas-SNP
PCDH11X	27328	hgsc.bcm.edu	37	X	91133563	91133563	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDH11X-193	NM_032968	exon2	c.C2324A	p.S775X	ATGAGTCGGTGAC	.	526.0	312.0	785.0	2.0	.	Atlas-SNP
PCDH11X	27328	hgsc.bcm.edu	37	X	91873488	91873488	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDH11X-193	NM_032968	exon7	c.G3593T	p.S1198I	GCCACAGCCCTCC	.	812.0	136.0	855.0	1.0	.	Atlas-SNP
DIAPH2	1730	hgsc.bcm.edu	37	X	96724708	96724708	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DIAPH2-133	NM_007309	exon27	c.G3257T	p.C1086F	ATCCCTGTGCAAC	.	286.0	44.0	371.0	0.0	.	Atlas-SNP
PCDH19	57526	hgsc.bcm.edu	37	X	99661493	99661493	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDH19-110	NM_001105243	exon1	c.C2103G	p.I701M	GCACTTGATTGCC	.	142.0	54.0	156.0	0.0	.	Atlas-SNP
TNMD	64102	hgsc.bcm.edu	37	X	99854700	99854700	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TNMD-130	NM_022144	exon7	c.C940A	p.L314M	CGCATGCTGGGGA	.	84.0	15.0	80.0	0.0	.	Atlas-SNP
CSTF2	1478	hgsc.bcm.edu	37	X	100093269	100093269	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CSTF2-131	NM_001325	exon13	c.G1653T	p.Q551H	AGACCAGATTGCC	.	195.0	33.0	218.0	0.0	.	Atlas-SNP
BTK	695	hgsc.bcm.edu	37	X	100615077	100615077	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BTK-1395	NM_000061	exon9	c.G838T	p.E280X	CTTACTCATACAT	.	69.0	11.0	69.0	0.0	.	Atlas-SNP
ARMCX3	51566	hgsc.bcm.edu	37	X	100880257	100880257	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	ARMCX3,NS,carcinoma,+1	ARMCX3-131	NM_177948	exon5	c.C288A	p.A96A	AAGGGCCAGGGCT	.	93.0	23.0	127.0	0.0	.	Atlas-SNP
BEX5	340542	hgsc.bcm.edu	37	X	101409039	101409039	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BEX5-86	NM_001159560	exon3	c.G199A	p.D67N	CCATATCATCTCC	.	167.0	34.0	201.0	0.0	.	Atlas-SNP
GPRASP1	9737	hgsc.bcm.edu	37	X	101909810	101909810	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPRASP1-131	NM_001099411	exon3	c.T969A	p.A323A	GAGAGCTGGGAAG	.	46.0	25.0	70.0	0.0	.	Atlas-SNP
GPRASP2	114928	hgsc.bcm.edu	37	X	101970728	101970728	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPRASP2-131	NM_001004051	exon5	c.G931T	p.E311X	AGGGAGGAGGCAA	.	153.0	41.0	139.0	0.0	.	Atlas-SNP
NXF3	56000	hgsc.bcm.edu	37	X	102334159	102334159	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NXF3-205	NM_022052	exon16	c.G1368T	p.V456V	CTTGAACACCCCG	.	432.0	194.0	481.0	2.0	.	Atlas-SNP
SLC25A53	401612	hgsc.bcm.edu	37	X	103349892	103349892	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001012755	exon2	c.C49A	p.R17R	CTGCTCGCGTCCT	.	209.0	69.0	208.0	0.0	.	Atlas-SNP
TEX13A	56157	hgsc.bcm.edu	37	X	104464179	104464179	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TEX13A-132	NM_031274	exon5	c.G697T	p.A233S	TGGAGGCAGCCCT	.	48.0	14.0	47.0	0.0	.	Atlas-SNP
TEX13A	56157	hgsc.bcm.edu	37	X	104465051	104465051	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TEX13A-132	NM_031274	exon2	c.G31T	p.G11W	GGAACCCGCTACT	.	90.0	33.0	71.0	0.0	.	Atlas-SNP
IL1RAPL2	26280	hgsc.bcm.edu	37	X	105011209	105011209	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IL1RAPL2-194	NM_017416	exon11	c.C1616A	p.S539Y	AGGGATCCAAAAG	.	162.0	62.0	190.0	0.0	.	Atlas-SNP
NRK	203447	hgsc.bcm.edu	37	X	105132287	105132287	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NRK-630	NM_198465	exon5	c.G253T	p.D85Y	CCATAGGATGAGG	.	393.0	145.0	405.0	1.0	.	Atlas-SNP
NRK	203447	hgsc.bcm.edu	37	X	105153825	105153825	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NRK-630	NM_198465	exon13	c.G2192T	p.W731L	GCAGATGGGAAGA	.	273.0	68.0	295.0	0.0	.	Atlas-SNP
NRK	203447	hgsc.bcm.edu	37	X	105178368	105178368	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NRK-630	NM_198465	exon20	c.C3431G	p.S1144C	ATTTTTCTGCCAA	.	320.0	92.0	298.0	0.0	.	Atlas-SNP
NRK	203447	hgsc.bcm.edu	37	X	105187993	105187993	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NRK-630	NM_198465	exon24	c.C4019A	p.A1340E	TTTATGCATGGGC	.	364.0	115.0	304.0	0.0	.	Atlas-SNP
NRK	203447	hgsc.bcm.edu	37	X	105197070	105197070	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NRK-630	NM_198465	exon28	c.A4558G	p.I1520V	AAGGCCATTGAAG	.	299.0	130.0	239.0	0.0	.	Atlas-SNP
SERPINA7	6906	hgsc.bcm.edu	37	X	105279361	105279361	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SERPINA7-226	NM_000354	exon3	c.C638T	p.P213L	TCAAAAGGATTTG	.	115.0	34.0	140.0	0.0	.	Atlas-SNP
TBC1D8B	54885	hgsc.bcm.edu	37	X	106083404	106083404	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TBC1D8B-133	NM_198881	exon9	c.G1480T	p.G494X	TTAAGAGGAGAAC	.	392.0	131.0	394.0	0.0	.	Atlas-SNP
COL4A6	1288	hgsc.bcm.edu	37	X	107420097	107420097	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	COL4A6-199	NM_033641	exon28	c.G2660T	p.G887V	GGCAACCCAGCGA	.	166.0	60.0	123.0	0.0	.	Atlas-SNP
IRS4	8471	hgsc.bcm.edu	37	X	107976957	107976957	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IRS4-623	NM_003604	exon1	c.C2618T	p.P873L	TTTGAAGGTGATC	.	117.0	35.0	137.0	0.0	.	Atlas-SNP
AMMECR1	9949	hgsc.bcm.edu	37	X	109507776	109507776	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	AMMECR1-130	NM_001171689	exon4	c.C156G	p.C52W	ACCTATGCATCCA	.	375.0	105.0	334.0	0.0	.	Atlas-SNP
RGAG1	57529	hgsc.bcm.edu	37	X	109696335	109696335	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RGAG1-132	NM_020769	exon3	c.G2490C	p.M830I	TGGAATGATGTCA	.	187.0	60.0	175.0	0.0	.	Atlas-SNP
CAPN6	827	hgsc.bcm.edu	37	X	110490730	110490730	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CAPN6-195	NM_014289	exon12	c.G1609T	p.V537L	GGTTTACAGCTGG	.	149.0	51.0	139.0	0.0	.	Atlas-SNP
DCX	1641	hgsc.bcm.edu	37	X	110653544	110653544	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DCX-554	NM_178153	exon2	c.G83A	p.S28N	GTGGGGCTAGGCA	.	227.0	72.0	197.0	0.0	.	Atlas-SNP
ALG13	79868	hgsc.bcm.edu	37	X	110964940	110964940	+	Splice_Site	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ALG13-130	NM_001257230	exon12	c.1123+1G>T	.	GAAAAGGTAAAGA	.	125.0	24.0	126.0	0.0	.	Atlas-SNP
ZCCHC16	340595	hgsc.bcm.edu	37	X	111698591	111698591	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZCCHC16-91	NM_001004308	exon3	c.G635C	p.C212S	CTCAGTGCATTCA	.	333.0	114.0	325.0	0.0	.	Atlas-SNP
LUZP4	51213	hgsc.bcm.edu	37	X	114540824	114540824	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LUZP4-132	NM_016383	exon4	c.G397C	p.E133Q	CAGTCAGAGGGGA	.	302.0	106.0	259.0	0.0	.	Atlas-SNP
SLC6A14	11254	hgsc.bcm.edu	37	X	115568956	115568956	+	Splice_Site	SNP	A	A	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC6A14-133	NM_007231	exon2	c.49-2A>C	.	TTCCCCAGAAAGT	.	61.0	13.0	67.0	0.0	.	Atlas-SNP
KLHL13	90293	hgsc.bcm.edu	37	X	117043644	117043644	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KLHL13-556	NM_001168300	exon5	c.A968T	p.Q323L	TCTGACTGCATAA	.	190.0	71.0	203.0	0.0	.	Atlas-SNP
KLHL13	90293	hgsc.bcm.edu	37	X	117043657	117043657	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KLHL13-556	NM_001168300	exon5	c.C955A	p.Q319K	CTGGCTGCATATA	.	195.0	78.0	201.0	0.0	.	Atlas-SNP
DOCK11	139818	hgsc.bcm.edu	37	X	117700598	117700598	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DOCK11-93	NM_144658	exon9	c.G933T	p.M311I	GAGCATGCATCCG	.	356.0	129.0	292.0	0.0	.	Atlas-SNP
KIAA1210	57481	hgsc.bcm.edu	37	X	118215375	118215375	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIAA1210-67	NM_020721	exon14	c.G5047C	p.V1683L	GCTCAACTGGGTT	.	185.0	64.0	148.0	0.0	.	Atlas-SNP
KIAA1210	57481	hgsc.bcm.edu	37	X	118221793	118221793	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIAA1210-67	NM_020721	exon11	c.C3400A	p.Q1134K	ACAGTTGCTGGAC	.	142.0	34.0	146.0	0.0	.	Atlas-SNP
KIAA1210	57481	hgsc.bcm.edu	37	X	118222705	118222705	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIAA1210-67	NM_020721	exon11	c.G2488T	p.E830X	GCTCCTCCTCAGA	.	19.0	6.0	33.0	0.0	.	Atlas-SNP
PGRMC1	10857	hgsc.bcm.edu	37	X	118370647	118370647	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PGRMC1-130	NM_006667	exon1	c.C321A	p.Y107X	ATTCTACGGGCCC	.	245.0	79.0	121.0	0.0	.	Atlas-SNP
PGRMC1	10857	hgsc.bcm.edu	37	X	118374361	118374361	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PGRMC1-130	NM_006667	exon2	c.G418C	p.D140H	GAGTACGATGACC	.	151.0	43.0	139.0	0.0	.	Atlas-SNP
NKRF	55922	hgsc.bcm.edu	37	X	118723944	118723944	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NKRF-131	NM_001173487	exon4	c.G1489C	p.V497L	GAATCACTTTGCA	.	54.0	22.0	55.0	0.0	.	Atlas-SNP
NKRF	55922	hgsc.bcm.edu	37	X	118723961	118723961	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NKRF-131	NM_001173487	exon4	c.T1472A	p.L491H	CAGCGGAGGCCTG	.	54.0	20.0	48.0	0.0	.	Atlas-SNP
NKRF	55922	hgsc.bcm.edu	37	X	118723962	118723962	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NKRF-131	NM_001173487	exon4	c.C1471A	p.L491I	AGCGGAGGCCTGT	.	55.0	20.0	49.0	0.0	.	Atlas-SNP
SEPT6	23157	hgsc.bcm.edu	37	X	118763333	118763333	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SEPT6-969	NM_145799	exon9	c.G1228A	p.G410S	GGGAGCCCTGGGA	.	106.0	17.0	75.0	0.0	.	Atlas-SNP
AKAP14	158798	hgsc.bcm.edu	37	X	119048832	119048832	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	AKAP14-226	NM_178813	exon5	c.C432A	p.T144T	CAAAACCAAACCA	.	134.0	36.0	103.0	0.0	.	Atlas-SNP
CT47B1	643311	hgsc.bcm.edu	37	X	120009189	120009189	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001145718	exon1	c.C336G	p.T112T	CCGACGGGTGGCC	.	638.0	230.0	416.0	1.0	.	Atlas-SNP
GRIA3	2892	hgsc.bcm.edu	37	X	122532571	122532571	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GRIA3-134	NM_007325	exon7	c.C997A	p.R333R	GTGTCCCGGAGAG	.	218.0	64.0	202.0	0.0	.	Atlas-SNP
THOC2	57187	hgsc.bcm.edu	37	X	122747368	122747368	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	THOC2-133	NM_001081550	exon36	c.C4559T	p.S1520F	TAAGGAGATTCAC	.	27.0	15.0	20.0	0.0	.	Atlas-SNP
THOC2	57187	hgsc.bcm.edu	37	X	122755031	122755031	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	THOC2-133	NM_001081550	exon31	c.C4193G	p.S1398X	ATATCTGATCTGG	.	69.0	16.0	66.0	0.0	.	Atlas-SNP
TENM1	10178	hgsc.bcm.edu	37	X	123870853	123870853	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_014253	exon4	c.C730T	p.L244L	TATGCAGATGGAC	.	97.0	31.0	91.0	0.0	.	Atlas-SNP
DCAF12L2	340578	hgsc.bcm.edu	37	X	125299535	125299535	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DCAF12L2-113	NM_001013628	exon1	c.G373T	p.V125L	ACTGCACGTCCAC	.	452.0	154.0	319.0	0.0	.	Atlas-SNP
DCAF12L1	139170	hgsc.bcm.edu	37	X	125686226	125686226	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DCAF12L1-132	NM_178470	exon1	c.G366C	p.V122V	GTCCACCACGAAA	.	629.0	200.0	431.0	1.0	.	Atlas-SNP
CXorf64	100130613	hgsc.bcm.edu	37	X	125954967	125954967	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001122716	exon2	c.G346T	p.A116S	GCACTGGCAGGCT	.	279.0	103.0	247.0	0.0	.	Atlas-SNP
ACTRT1	139741	hgsc.bcm.edu	37	X	127185766	127185766	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ACTRT1-133	NM_138289	exon1	c.T420A	p.H140Q	CACCGCATGATTA	.	219.0	68.0	208.0	0.0	.	Atlas-SNP
SMARCA1	6594	hgsc.bcm.edu	37	X	128649928	128649928	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SMARCA1-230	NM_003069	exon4	c.C472A	p.L158M	CAGACAGTAGCTC	.	151.0	63.0	137.0	0.0	.	Atlas-SNP
XPNPEP2	7512	hgsc.bcm.edu	37	X	128888456	128888456	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	XPNPEP2-130	NM_003399	exon12	c.C1116T	p.D372D	GCGGGACGCTGTG	.	131.0	38.0	95.0	0.0	.	Atlas-SNP
ZDHHC9	51114	hgsc.bcm.edu	37	X	128940383	128940383	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZDHHC9-131	NM_016032	exon11	c.C1058A	p.P353Q	GGCTCTGGGGGCT	.	96.0	29.0	85.0	0.0	.	Atlas-SNP
UTP14A	10813	hgsc.bcm.edu	37	X	129053172	129053172	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	UTP14A-132	NM_006649	exon7	c.G559A	p.E187K	GAGCAGGAAATTT	.	173.0	33.0	146.0	0.0	.	Atlas-SNP
BCORL1	63035	hgsc.bcm.edu	37	X	129173157	129173157	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BCORL1-294	NM_021946	exon9	c.G4518T	p.W1506C	CATCTGGCTCCTG	.	148.0	41.0	130.0	0.0	.	Atlas-SNP
AIFM1	9131	hgsc.bcm.edu	37	X	129289211	129289211	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	AIFM1-586	NM_145812	exon2	c.G157T	p.G53C	AAGCACCTGTAGA	.	227.0	82.0	164.0	0.0	.	Atlas-SNP
ENOX2	10495	hgsc.bcm.edu	37	X	129843245	129843245	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ENOX2-131	NM_182314	exon4	c.G21T	p.W7C	CCACAGCCATCTA	.	192.0	63.0	159.0	0.0	.	Atlas-SNP
ARHGAP36	158763	hgsc.bcm.edu	37	X	130222738	130222738	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ARHGAP36-133	NM_144967	exon12	c.C1623G	p.G541G	AACTGGCGTCAGC	.	116.0	37.0	125.0	0.0	.	Atlas-SNP
RAP2C	57826	hgsc.bcm.edu	37	X	131348263	131348263	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RAP2C-848	NM_001271186	exon5	c.G485T	p.R162M	ATTTGCCTGACGA	.	447.0	150.0	417.0	0.0	.	Atlas-SNP
DDX26B	203522	hgsc.bcm.edu	37	X	134679347	134679347	+	Splice_Site	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DDX26B-226	NM_182540	exon3	c.190-1G>T	.	TTTGCAGGCTGGT	.	138.0	49.0	117.0	0.0	.	Atlas-SNP
DDX26B	203522	hgsc.bcm.edu	37	X	134679497	134679497	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DDX26B-226	NM_182540	exon3	c.G339T	p.Q113H	TGGACAGGTAAAA	.	87.0	20.0	113.0	0.0	.	Atlas-SNP
DDX26B	203522	hgsc.bcm.edu	37	X	134679498	134679498	+	Splice_Site	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DDX26B-226	NM_182540	exon3	c.339+1G>T	.	GGACAGGTAAAAA	.	87.0	20.0	113.0	0.0	.	Atlas-SNP
DDX26B	203522	hgsc.bcm.edu	37	X	134707987	134707987	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DDX26B-226	NM_182540	exon12	c.G1630C	p.D544H	GATGAAGGTAAAA	.	208.0	65.0	242.0	0.0	.	Atlas-SNP
SAGE1	55511	hgsc.bcm.edu	37	X	134992242	134992242	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SAGE1-133	NM_018666	exon15	c.G1777T	p.A593S	CAAGCAGCATCCG	.	270.0	90.0	295.0	0.0	.	Atlas-SNP
SLC9A6	10479	hgsc.bcm.edu	37	X	135098854	135098854	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC9A6-131	NM_001177651	exon11	c.G1131T	p.M377I	CTACATGGGGCTG	.	100.0	40.0	101.0	0.0	.	Atlas-SNP
MAP7D3	79649	hgsc.bcm.edu	37	X	135313958	135313958	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MAP7D3-110	NM_001173517	exon7	c.G1053A	p.P351P	CGCCTCCGGGGAT	.	137.0	60.0	120.0	0.0	.	Atlas-SNP
GPR112	139378	hgsc.bcm.edu	37	X	135428212	135428212	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPR112-183	NM_153834	exon6	c.G2347C	p.V783L	ACTGTTGTTCCAT	.	250.0	87.0	286.0	0.0	.	Atlas-SNP
MCF2	4168	hgsc.bcm.edu	37	X	138699719	138699719	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MCF2-227	NM_001099855	exon11	c.C1132A	p.R378R	GTATCCGTTTTGC	.	115.0	35.0	112.0	0.0	.	Atlas-SNP
MAGEC1	9947	hgsc.bcm.edu	37	X	140993233	140993233	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MAGEC1-133	NM_005462	exon4	c.C43G	p.L15V	AGTCTTCTCCAGA	.	114.0	29.0	99.0	0.0	.	Atlas-SNP
MAGEC2	51438	hgsc.bcm.edu	37	X	141291129	141291129	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MAGEC2-193	NM_016249	exon3	c.C645A	p.T215T	CTCATCGGTGAGG	.	261.0	101.0	253.0	0.0	.	Atlas-SNP
SPANXN3	139067	hgsc.bcm.edu	37	X	142605191	142605191	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SPANXN3-132	NM_001009609	exon1	c.G29T	p.G10V	TTCTCCCCATTGG	.	118.0	31.0	111.0	0.0	.	Atlas-SNP
SLITRK4	139065	hgsc.bcm.edu	37	X	142717517	142717517	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLITRK4-193	NM_173078	exon2	c.G1408A	p.D470N	TGGAGTCAAAGGT	.	165.0	66.0	168.0	0.0	.	Atlas-SNP
SLITRK2	84631	hgsc.bcm.edu	37	X	144904123	144904123	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLITRK2-136	NM_001144006	exon3	c.C180A	p.P60P	GCCCCCCCAGTAT	.	185.0	64.0	188.0	0.0	.	Atlas-SNP
SLITRK2	84631	hgsc.bcm.edu	37	X	144905170	144905170	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLITRK2-136	NM_001144006	exon3	c.C1227A	p.N409K	AAACAACAGGATT	.	257.0	66.0	242.0	0.0	.	Atlas-SNP
FMR1	2332	hgsc.bcm.edu	37	X	147030346	147030346	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FMR1-133	NM_001185081	exon15	c.C1547A	p.S516X	ACCACTCGTGAAT	.	216.0	60.0	192.0	0.0	.	Atlas-SNP
AFF2	2334	hgsc.bcm.edu	37	X	148049222	148049222	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	AFF2-135	NM_002025	exon15	c.G3267T	p.L1089L	TGCACTGGTAAGT	.	77.0	28.0	65.0	0.0	.	Atlas-SNP
IDS	3423	hgsc.bcm.edu	37	X	148582538	148582538	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IDS-130	NM_006123	exon4	c.C449A	p.P150Q	CTATACGGAGAAT	.	90.0	26.0	83.0	0.0	.	Atlas-SNP
MAGEA11	4110	hgsc.bcm.edu	37	X	148797322	148797322	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MAGEA11-132	NM_001011544	exon4	c.C164A	p.T55N	GGATCACTGGAGG	.	227.0	81.0	206.0	0.0	.	Atlas-SNP
MAMLD1	10046	hgsc.bcm.edu	37	X	149639349	149639349	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MAMLD1-130	NM_001177466	exon2	c.C1429A	p.Q477K	CAGCAGCAAGCAA	.	294.0	104.0	250.0	0.0	.	Atlas-SNP
MTM1	4534	hgsc.bcm.edu	37	X	149818249	149818249	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MTM1-228	NM_000252	exon10	c.G928C	p.D310H	TTCTTAGACATTC	.	174.0	54.0	152.0	0.0	.	Atlas-SNP
MTMR1	8776	hgsc.bcm.edu	37	X	149905230	149905230	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MTMR1-131	NM_003828	exon10	c.C1220A	p.T407K	ATGGGACGCATTG	.	148.0	49.0	170.0	0.0	.	Atlas-SNP
GPR50	9248	hgsc.bcm.edu	37	X	150349375	150349375	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPR50-176	NM_004224	exon2	c.G1320T	p.K440N	CCCTAAGCCTGCC	.	152.0	53.0	118.0	0.0	.	Atlas-SNP
FATE1	89885	hgsc.bcm.edu	37	X	150891194	150891194	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FATE1-131	NM_033085	exon5	c.C515G	p.A172G	TGTCGGCCAGCAT	.	470.0	159.0	386.0	1.0	.	Atlas-SNP
CNGA2	1260	hgsc.bcm.edu	37	X	150911921	150911921	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CNGA2-193	NM_005140	exon7	c.G946T	p.E316X	GACCCTGAGTATG	.	319.0	93.0	296.0	0.0	.	Atlas-SNP
CNGA2	1260	hgsc.bcm.edu	37	X	150912769	150912769	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CNGA2-193	NM_005140	exon7	c.G1794A	p.Q598Q	CGTGCAGGAGAAG	.	172.0	65.0	180.0	0.0	.	Atlas-SNP
MAGEA4	4103	hgsc.bcm.edu	37	X	151092271	151092271	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MAGEA4-194	NM_002362	exon3	c.T135A	p.P45P	CTCTCCTCTGGTC	.	409.0	134.0	316.0	0.0	.	Atlas-SNP
PNMA5	114824	hgsc.bcm.edu	37	X	152159412	152159412	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PNMA5-131	NM_001103150	exon2	c.C731G	p.S244C	AACTGAGAGGCTC	.	57.0	25.0	51.0	0.0	.	Atlas-SNP
PNMA3	29944	hgsc.bcm.edu	37	X	152226512	152226512	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PNMA3-600	NM_013364	exon2	c.C1100T	p.P367L	CAGTACCTCTCCC	.	179.0	53.0	169.0	0.0	.	Atlas-SNP
PNMA3	29944	hgsc.bcm.edu	37	X	152226745	152226745	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PNMA3-600	NM_013364	exon2	c.G1333C	p.E445Q	GCAGTTGAGTCGG	.	287.0	97.0	220.0	0.0	.	Atlas-SNP
MAGEA1	4100	hgsc.bcm.edu	37	X	152482814	152482814	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MAGEA1-622	NM_004988	exon3	c.C197A	p.T66N	ATGGTAGTGGGAA	.	419.0	100.0	358.0	0.0	.	Atlas-SNP
PNCK	139728	hgsc.bcm.edu	37	X	152936621	152936621	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PNCK-207	NM_001039582	exon8	c.C888A	p.Y296X	CTCGTCGTAGAAG	.	103.0	34.0	109.0	0.0	.	Atlas-SNP
SLC6A8	6535	hgsc.bcm.edu	37	X	152958807	152958807	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC6A8-131	NM_005629	exon6	c.C1002A	p.N334K	CTTCAACAACAAC	.	361.0	121.0	269.0	0.0	.	Atlas-SNP
PLXNB3	5365	hgsc.bcm.edu	37	X	153042416	153042416	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PLXNB3-130	NM_001163257	exon30	c.G4977T	p.Q1659H	GGCCCAGAGGTGC	.	330.0	128.0	311.0	0.0	.	Atlas-SNP
L1CAM	3897	hgsc.bcm.edu	37	X	153133825	153133825	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	L1CAM-138	NM_001143963	exon12	c.C1620A	p.P540P	CAAGGAGGGGTCA	.	318.0	123.0	270.0	0.0	.	Atlas-SNP
GAB3	139716	hgsc.bcm.edu	37	X	153927602	153927602	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GAB3-227	NM_001081573	exon6	c.C1312A	p.P438T	TCACTGGGGGAGG	.	172.0	65.0	129.0	0.0	.	Atlas-SNP
DKC1	1736	hgsc.bcm.edu	37	X	154001499	154001499	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DKC1-227	NM_001363	exon11	c.C1130A	p.P377H	CTTACCCTCGGAA	.	588.0	237.0	454.0	0.0	.	Atlas-SNP
F8	2157	hgsc.bcm.edu	37	X	154157538	154157538	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	F8-182	NM_000132	exon14	c.C4527G	p.G1509G	AACTTTGCCAGAT	.	103.0	35.0	70.0	0.0	.	Atlas-SNP
F8	2157	hgsc.bcm.edu	37	X	154158316	154158316	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	F8-182	NM_000132	exon14	c.G3749T	p.S1250I	CTAGTGCTCAGTA	.	64.0	26.0	52.0	0.0	.	Atlas-SNP
CCNB3	85417	hgsc.bcm.edu	37	X	50054083	50054083	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CCNB3-482	NM_033031	exon5	c.2913delT	p.V971fs	.	.	184.0	50.0	204.0	0.0	.	Atlas-Indel
MAGED1	9500	hgsc.bcm.edu	37	X	51639728	51639728	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MAGED1-133	NM_001005333	exon5	c.1144delA	p.R382fs	.	.	281.0	53.0	348.0	0.0	.	Pindel
TAF1	6872	hgsc.bcm.edu	37	X	70683717	70683717	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TAF1-900	NM_138923	exon38	c.5439delA	p.Q1813fs	.	.	341.0	95.0	482.0	0.0	.	Pindel
