Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Algorithm
MUC5B	727897	hgsc.bcm.edu	37	11	1253976	1253976	+	Missense_Mutation	SNP	A	A	G	rs76956995		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	.	NM_002458	exon17	c.A2041G	p.S681G	CAGCTCAGCGACT	.	84.0	8.0	13.0	0.0	.	Atlas-SNP
MUC5B	727897	hgsc.bcm.edu	37	11	1253980	1253980	+	Missense_Mutation	SNP	A	A	G	rs202127660		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	.	NM_002458	exon17	c.A2045G	p.D682G	TCAGCGACTGGAG	.	82.0	6.0	12.0	0.0	.	Atlas-SNP
MUC5B	727897	hgsc.bcm.edu	37	11	1271223	1271223	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	.	NM_002458	exon31	c.C13113G	p.T4371T	GGCCACCACGACA	.	401.0	35.0	295.0	0.0	.	Atlas-SNP
PRKRIR	5612	hgsc.bcm.edu	37	11	76072085	76072085	+	Missense_Mutation	SNP	C	C	T	rs76214254	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	PRKRIR-93	NM_004705	exon3	c.G233A	p.R78Q	TTATCTCGAAGAA	.	49.0	4.0	33.0	0.0	C|0.999;T|0.001	Atlas-SNP
C11orf63	79864	hgsc.bcm.edu	37	11	122817236	122817236	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	C11orf63-93	NM_024806	exon6	c.G1665T	p.T555T	CCAGACGGTTAGA	.	99.0	90.0	113.0	0.0	.	Atlas-SNP
SLC35E3	55508	hgsc.bcm.edu	37	12	69153001	69153001	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	SLC35E3-514	NM_018656	exon4	c.G737T	p.G246V	TCATTGGGAACAC	.	54.0	4.0	57.0	0.0	.	Atlas-SNP
HCAR1	27198	hgsc.bcm.edu	37	12	123214708	123214708	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	HCAR1-156	NM_032554	exon1	c.C179G	p.A60G	AAATCAGCCACGG	.	75.0	68.0	90.0	0.0	.	Atlas-SNP
SLITRK5	26050	hgsc.bcm.edu	37	13	88330510	88330517	+	Frame_Shift_Del	DEL	GCCAGTTC	GCCAGTTC	-	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	GCCAGTTC	GCCAGTTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	SLITRK5-94	NM_015567	exon2	c.2866_2873del	p.956_958del	.	.	14.0	14.0	47.0	0.0	.	Atlas-Indel
ZNF774	342132	hgsc.bcm.edu	37	15	90904066	90904066	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	ZNF774-90	NM_001004309	exon4	c.G1003C	p.V335L	CATTTTGTAGCTC	.	40.0	4.0	59.0	0.0	.	Atlas-SNP
PDILT	204474	hgsc.bcm.edu	37	16	20384188	20384188	+	Missense_Mutation	SNP	C	C	A	rs193085306	alternate_allele	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	PDILT-153	NM_174924	exon7	c.G854T	p.S285I	TCGGAGCTTTTGG	.	173.0	78.0	88.0	0.0	C|0.999;T|0.000	Atlas-SNP
ADAMTS18	170692	hgsc.bcm.edu	37	16	77389876	77389876	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	ADAMTS18-1036	NM_199355	exon9	c.G1421T	p.W474L	GAAGACCATGAAA	.	172.0	88.0	114.0	0.0	.	Atlas-SNP
TP53	7157	hgsc.bcm.edu	37	17	7574012	7574012	+	Nonsense_Mutation	SNP	C	C	A	rs17882252	byfrequency;alternate_allele	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	TP53,NS,carcinoma,0	TP53-70225	NM_000546	exon10	c.G1015T	p.E339X	ACATCTCGAAGCG	.	105.0	89.0	136.0	0.0	C|0.994;T|0.006	Atlas-SNP
C17orf66	256957	hgsc.bcm.edu	37	17	34190106	34190106	+	Silent	SNP	G	G	T	rs142219051	alternate_allele	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	C17orf66-155	NM_152781	exon8	c.C649A	p.R217R	GAGCCCGGATCAC	.	44.0	4.0	42.0	0.0	G|1.000;A|0.000	Atlas-SNP
ASPSCR1	79058	hgsc.bcm.edu	37	17	79974915	79974916	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	ASPSCR1-877	NM_001251888	exon16	c.1855_1856del	p.619_619del	.	.	44.0	27.0	7.0	0.0	.	Pindel
CHST9	83539	hgsc.bcm.edu	37	18	24497051	24497051	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	CHST9-93	NM_031422	exon6	c.G504T	p.W168C	TTTCTTCCATTTA	.	53.0	45.0	85.0	0.0	.	Atlas-SNP
ZNF77	58492	hgsc.bcm.edu	37	19	2934196	2934196	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	ZNF77-91	NM_021217	exon4	c.C929G	p.S310C	CTAAAGGAGGAGT	.	275.0	115.0	145.0	0.0	.	Atlas-SNP
ANKRD24	170961	hgsc.bcm.edu	37	19	4216002	4216002	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	ANKRD24-68	NM_133475	exon16	c.G1225A	p.V409I	TATGACGTAACCA	.	119.0	54.0	49.0	0.0	.	Atlas-SNP
ZNF546	339327	hgsc.bcm.edu	37	19	40520223	40520223	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	ZNF546-155	NM_178544	exon7	c.G1046T	p.R349I	ATCAAAGAATTCA	.	160.0	78.0	75.0	0.0	.	Atlas-SNP
HSPG2	3339	hgsc.bcm.edu	37	1	22180824	22180824	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	HSPG2-141	NM_005529	exon50	c.C6301G	p.R2101G	GCAGACGGGAGCC	.	53.0	45.0	49.0	0.0	.	Atlas-SNP
MIR205HG	642587	hgsc.bcm.edu	37	1	209605636	209605637	+	In_Frame_Ins	INS	-	-	AGC	rs3842530	bycluster;by1000genomes	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	.	NM_001104548	exon4	c.251_252insAGC	p.V84delinsVA	.	.	66.0	23.0	21.0	0.0	.	Atlas-Indel
TSPYL6	388951	hgsc.bcm.edu	37	2	54482557	54482557	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	TSPYL6-90	NM_001003937	exon1	c.C732A	p.I244I	GCGAATGATGTCA	.	72.0	5.0	90.0	0.0	.	Atlas-SNP
SMARCAL1	50485	hgsc.bcm.edu	37	2	217341854	217341854	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	SMARCAL1-293	NM_014140	exon16	c.G2450A	p.R817H	AGGACCGCGTGCA	.	86.0	76.0	98.0	0.0	.	Atlas-SNP
NISCH	11188	hgsc.bcm.edu	37	3	52492817	52492817	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	NISCH-93	NM_001276293	exon3	c.T317C	p.V106A	CTGGCGTGACCCC	.	62.0	4.0	68.0	0.0	.	Atlas-SNP
CRIPAK	285464	hgsc.bcm.edu	37	4	1388848	1388848	+	Silent	SNP	A	A	C	rs74511366	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	CRIPAK-90	NM_175918	exon1	c.A549C	p.P183P	CGTGCCAACGTGG	.	231.0	32.0	11.0	0.0	A|0.993;C|0.000;G|0.006	Atlas-SNP
CRIPAK	285464	hgsc.bcm.edu	37	4	1388867	1388867	+	Missense_Mutation	SNP	A	A	C	rs76058011	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	CRIPAK-90	NM_175918	exon1	c.A568C	p.I190L	CGCCTGATCACAC	.	234.0	27.0	15.0	0.0	A|0.994;C|0.006	Atlas-SNP
MANBA	4126	hgsc.bcm.edu	37	4	103644191	103644191	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	MANBA-91	NM_005908	exon4	c.A386G	p.D129G	GTAATATCAAAGC	.	120.0	48.0	78.0	0.0	.	Atlas-SNP
GPR98	84059	hgsc.bcm.edu	37	5	90124769	90124769	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	GPR98-103	NM_032119	exon77	c.G16377T	p.Q5459H	ACCACAGGTTGAA	.	32.0	22.0	27.0	0.0	.	Atlas-SNP
ATXN1	6310	hgsc.bcm.edu	37	6	16327894	16327894	+	Missense_Mutation	SNP	C	C	A	rs201040133		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	ATXN1-93	NM_000332	exon8	c.G648T	p.Q216H	CTGCTGCTGCTGC	.	76.0	6.0	6.0	0.0	.	Atlas-SNP
HLA-G	3135	hgsc.bcm.edu	37	6	29797691	29797691	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	HLA-G-517	NM_002127	exon6	c.T994C	p.W332R	GTGCTGTGGAGAA	.	272.0	125.0	163.0	0.0	.	Atlas-SNP
DDR1	780	hgsc.bcm.edu	37	6	30866949	30866949	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	DDR1-1403	NM_013993	exon19	c.C2618T	p.P873L	CCCGGCCGCCTGC	.	198.0	91.0	102.0	0.0	.	Atlas-SNP
AIM1	202	hgsc.bcm.edu	37	6	106968127	106968127	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	AIM1-139	NM_001624	exon2	c.C1820T	p.S607F	AACACTCTCATTG	.	139.0	51.0	108.0	0.0	.	Atlas-SNP
AIM1	202	hgsc.bcm.edu	37	6	106968157	106968157	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	AIM1-139	NM_001624	exon2	c.C1850T	p.S617F	CAAAATCTGGCCC	.	135.0	53.0	108.0	0.0	.	Atlas-SNP
AIM1	202	hgsc.bcm.edu	37	6	106968170	106968170	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	AIM1-139	NM_001624	exon2	c.C1863T	p.V621V	ACAAGTCATACCG	.	136.0	47.0	106.0	0.0	.	Atlas-SNP
AIM1	202	hgsc.bcm.edu	37	6	106968184	106968184	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	AIM1-139	NM_001624	exon2	c.C1877T	p.S626L	CAGCATCAGAGAA	.	133.0	46.0	110.0	0.0	.	Atlas-SNP
AIM1	202	hgsc.bcm.edu	37	6	106968204	106968204	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	AIM1-139	NM_001624	exon2	c.C1897T	p.Q633X	CCTATTCAGGCTC	.	147.0	52.0	121.0	0.0	.	Atlas-SNP
AIM1	202	hgsc.bcm.edu	37	6	106968247	106968247	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	AIM1-139	NM_001624	exon2	c.C1940T	p.S647F	CTGAATCCAGTCC	.	174.0	57.0	147.0	0.0	.	Atlas-SNP
AIM1	202	hgsc.bcm.edu	37	6	106968248	106968248	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	AIM1-139	NM_001624	exon2	c.C1941T	p.S647S	TGAATCCAGTCCC	.	175.0	58.0	148.0	0.0	.	Atlas-SNP
AIM1	202	hgsc.bcm.edu	37	6	106968252	106968252	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	AIM1-139	NM_001624	exon2	c.C1945T	p.P649S	TCCAGTCCCACCA	.	179.0	64.0	149.0	0.0	.	Atlas-SNP
AIM1	202	hgsc.bcm.edu	37	6	106968291	106968291	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	AIM1-139	NM_001624	exon2	c.C1984T	p.P662S	GCCACTCCTCAAA	.	172.0	61.0	156.0	0.0	.	Atlas-SNP
AIM1	202	hgsc.bcm.edu	37	6	106968355	106968355	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	AIM1-139	NM_001624	exon2	c.C2048T	p.S683F	ACATTTCTGCTGG	.	105.0	35.0	95.0	0.0	.	Atlas-SNP
AIM1	202	hgsc.bcm.edu	37	6	106978066	106978066	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	AIM1-139	NM_001624	exon6	c.C3370T	p.H1124Y	GTTAGTCACATTG	.	178.0	85.0	100.0	0.0	.	Atlas-SNP
FER1L6	654463	hgsc.bcm.edu	37	8	125109589	125109589	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	FER1L6,NS,carcinoma,0	FER1L6-100	NM_001039112	exon36	c.G4773A	p.R1591R	TCCAAGGCGACCC	.	146.0	61.0	100.0	0.0	.	Atlas-SNP
CCDC171	203238	hgsc.bcm.edu	37	9	15724809	15724809	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	.	NM_173550	exon14	c.G1527T	p.E509D	TAAAGAGTTAAGT	.	186.0	69.0	129.0	0.0	.	Atlas-SNP
SMC1A	8243	hgsc.bcm.edu	37	X	53430781	53430781	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	SMC1A-232	NM_006306	exon14	c.C2241G	p.R747R	ATTAATGCGAGGC	.	150.0	62.0	110.0	0.0	.	Atlas-SNP
CT47B1	643311	hgsc.bcm.edu	37	X	120009056	120009056	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	.	NM_001145718	exon1	c.G469A	p.A157T	CAGCAGCGTGGGG	.	622.0	255.0	117.0	0.0	.	Atlas-SNP
