Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Algorithm
TUBAL3	79861	hgsc.bcm.edu	37	10	5436106	5436106	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	TUBAL3-91	NM_024803	exon4	c.G715T	p.V239F	CCTGAACCACCAA	.	354.0	87.0	246.0	0.0	.	Atlas-SNP
TUBAL3	79861	hgsc.bcm.edu	37	10	5436107	5436107	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	TUBAL3-91	NM_024803	exon4	c.G714T	p.V238V	CTGAACCACCAAT	.	356.0	89.0	245.0	0.0	.	Atlas-SNP
TET1	80312	hgsc.bcm.edu	37	10	70406351	70406351	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	TET1-663	NM_030625	exon4	c.A3865C	p.T1289P	CAGTTAACGGTGA	.	165.0	36.0	152.0	0.0	.	Atlas-SNP
HKDC1	80201	hgsc.bcm.edu	37	10	71017117	71017117	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	HKDC1-95	NM_025130	exon14	c.A1967G	p.D656G	TGAATGATACAGT	.	202.0	26.0	139.0	0.0	.	Atlas-SNP
BTAF1	9044	hgsc.bcm.edu	37	10	93726392	93726392	+	Splice_Site	SNP	A	A	G	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	BTAF1-92	NM_003972	exon14	c.1530-2A>G	.	TTTATTAGTATTC	.	74.0	4.0	42.0	0.0	.	Atlas-SNP
SMC3	9126	hgsc.bcm.edu	37	10	112341738	112341738	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	SMC3-92	NM_005445	exon9	c.C605T	p.T202I	TACATACTCTAGA	.	75.0	13.0	66.0	0.0	.	Atlas-SNP
SORCS3	22986	hgsc.bcm.edu	37	10	106976865	106976865	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	SORCS3-99	NM_014978	exon19	c.2718delC	p.L906fs	.	.	249.0	40.0	137.0	0.0	.	Pindel
MRGPRX4	117196	hgsc.bcm.edu	37	11	18195200	18195200	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	MRGPRX4-91	NM_054032	exon1	c.C397T	p.R133C	CGCTGCCGCCGCC	.	146.0	28.0	106.0	0.0	.	Atlas-SNP
CCDC81	60494	hgsc.bcm.edu	37	11	86086270	86086270	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	CCDC81-91	NM_021827	exon1	c.C65T	p.S22L	TGCCCTCGCTGAG	.	37.0	11.0	32.0	0.0	.	Atlas-SNP
PPP1CA	5499	hgsc.bcm.edu	37	11	67166486	67166487	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	PPP1CA-659	NM_206873	exon4	c.540_541del	p.180_181del	.	.	108.0	25.0	98.0	0.0	.	Atlas-Indel
ATM	472	hgsc.bcm.edu	37	11	108123627	108123627	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	ATM-3419	NM_000051	exon12	c.1885delA	p.S629fs	.	.	48.0	17.0	42.0	0.0	.	Atlas-Indel
KRT78	196374	hgsc.bcm.edu	37	12	53233007	53233007	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	KRT78-188	NM_173352	exon9	c.G1453A	p.D485N	CAGGGTCCTTCCC	.	214.0	38.0	125.0	0.0	.	Atlas-SNP
AMHR2	269	hgsc.bcm.edu	37	12	53822782	53822782	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	AMHR2-628	NM_001164691	exon7	c.C955T	p.R319C	GAGGAGCGCTGGC	.	51.0	10.0	48.0	0.0	.	Atlas-SNP
NAV3	89795	hgsc.bcm.edu	37	12	78583826	78583826	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	NAV3-279	NM_014903	exon33	c.C6052A	p.Q2018K	ATTACCCAAAGGT	.	99.0	8.0	66.0	0.0	.	Atlas-SNP
ATXN7L3B	552889	hgsc.bcm.edu	37	12	74932091	74932092	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	AA	AA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	.	NM_001136262	exon1	c.198_199del	p.66_67del	.	.	150.0	23.0	89.0	0.0	.	Atlas-Indel
MIPEP	4285	hgsc.bcm.edu	37	13	24304549	24304549	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	MIPEP-90	NM_005932	exon19	c.G2080C	p.V694L	CACTTACGAAGTC	.	86.0	14.0	76.0	0.0	.	Atlas-SNP
FOXG1	2290	hgsc.bcm.edu	37	14	29237445	29237445	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	FOXG1-660	NM_005249	exon1	c.C960T	p.R320R	CCCCCGCGCCAGC	.	109.0	7.0	34.0	0.0	.	Atlas-SNP
UBE3A	7337	hgsc.bcm.edu	37	15	25616489	25616489	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	UBE3A-660	NM_130839	exon6	c.C832T	p.P278S	AATTAGGATCTCG	.	77.0	7.0	90.0	0.0	.	Atlas-SNP
CALML4	91860	hgsc.bcm.edu	37	15	68491886	68491886	+	Silent	SNP	G	G	A	rs200702934	byfrequency	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	CALML4-90	NM_033429	exon3	c.C297T	p.H99H	TATCCCGTGGGTC	.	54.0	5.0	46.0	0.0	G|0.998;A|0.002	Atlas-SNP
VPS35	55737	hgsc.bcm.edu	37	16	46714715	46714715	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	VPS35-90	NM_018206	exon5	c.C374G	p.S125C	TTCCTGGACTGAG	.	226.0	24.0	215.0	0.0	.	Atlas-SNP
KRTAP4-7	100132476	hgsc.bcm.edu	37	17	39240804	39240804	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	.	NM_033061	exon1	c.C346A	p.R116S	TGCTGCCGCCCCT	.	126.0	17.0	37.0	0.0	.	Atlas-SNP
KRTAP4-7	100132476	hgsc.bcm.edu	37	17	39240805	39240805	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	.	NM_033061	exon1	c.G347T	p.R116L	GCTGCCGCCCCTG	.	125.0	13.0	39.0	0.0	.	Atlas-SNP
C17orf53	78995	hgsc.bcm.edu	37	17	42225398	42225398	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	C17orf53-90	NM_001171251	exon3	c.A227G	p.D76G	TGCCAGACTTGGA	.	56.0	6.0	62.0	0.0	.	Atlas-SNP
ABCC3	8714	hgsc.bcm.edu	37	17	48741342	48741342	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	ABCC3-93	NM_001144070	exon10	c.C1208T	p.A403V	AACGTGCGTCCAC	.	263.0	86.0	254.0	0.0	.	Atlas-SNP
FZR1	51343	hgsc.bcm.edu	37	19	3525978	3525978	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	FZR1-227	NM_016263	exon3	c.T182G	p.F61C	TGAACTTCCACAG	.	121.0	22.0	65.0	0.0	.	Atlas-SNP
DDX39A	10212	hgsc.bcm.edu	37	19	14520224	14520224	+	Missense_Mutation	SNP	C	C	T	rs188717433		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	DDX39A-226	NM_005804	exon9	c.G1010A	p.R337Q	ATCCGCCGCTGGA	.	114.0	29.0	71.0	0.0	C|0.999;T|0.000	Atlas-SNP
C19orf12	83636	hgsc.bcm.edu	37	19	30199201	30199201	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	C19orf12-204	NM_031448	exon2	c.C120T	p.F40F	CCCGACGAAGGCC	.	84.0	15.0	43.0	0.0	.	Atlas-SNP
SIGLEC5	8778	hgsc.bcm.edu	37	19	52132321	52132321	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	SIGLEC5-92	NM_003830	exon4	c.C709T	p.Q237X	TGGTCTGTGGAGC	.	197.0	26.0	114.0	0.0	.	Atlas-SNP
ZNF845	91664	hgsc.bcm.edu	37	19	53856661	53856661	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	.	NM_138374	exon4	c.A2733G	p.G911G	TACTGGAGAGAAA	.	138.0	9.0	90.0	0.0	.	Atlas-SNP
BRDT	676	hgsc.bcm.edu	37	1	92446707	92446707	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	BRDT-374	NM_207189	exon10	c.T1722A	p.C574X	GGCATGTCTAAGA	.	57.0	15.0	62.0	0.0	.	Atlas-SNP
CA14	23632	hgsc.bcm.edu	37	1	150232559	150232559	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	CA14-91	NM_012113	exon2	c.G69T	p.T23T	CTGGACGTATGAG	.	220.0	39.0	192.0	0.0	.	Atlas-SNP
RYR2	6262	hgsc.bcm.edu	37	1	237580422	237580422	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	RYR2-158	NM_001035	exon11	c.G847A	p.A283T	AGAGTTGCGTAAG	.	178.0	20.0	133.0	0.0	.	Atlas-SNP
FBXO42	54455	hgsc.bcm.edu	37	1	16580181	16580181	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	FBXO42-228	NM_018994	exon7	c.814delA	p.K272fs	.	.	79.0	21.0	56.0	0.0	.	Atlas-Indel
PRPF38B	55119	hgsc.bcm.edu	37	1	109235422	109235425	+	Frame_Shift_Del	DEL	CTTA	CTTA	-	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	CTTA	CTTA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	PRPF38B-90	NM_018061	exon1	c.208_211del	p.70_71del	.	.	378.0	130.0	206.0	0.0	.	Atlas-Indel
SCAMP3	10067	hgsc.bcm.edu	37	1	155227427	155227429	+	In_Frame_Del	DEL	AGG	AGG	-	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	AGG	AGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	SCAMP3-93	NM_005698	exon6	c.538_540del	p.180_180del	.	.	218.0	34.0	241.0	0.0	.	Atlas-Indel
ADAM33	80332	hgsc.bcm.edu	37	20	3652895	3652895	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	ADAM33-291	NM_025220	exon14	c.T1483C	p.C495R	GGGGACAGTGGGA	.	166.0	39.0	142.0	0.0	.	Atlas-SNP
ADAM33	80332	hgsc.bcm.edu	37	20	3652900	3652900	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	ADAM33-291	NM_025220	exon14	c.C1478G	p.S493C	CAGTGGGAGGAGG	.	168.0	37.0	145.0	0.0	.	Atlas-SNP
RBM39	9584	hgsc.bcm.edu	37	20	34300947	34300947	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	RBM39-91	NM_001242599	exon11	c.G1102T	p.V368L	CTGCCACAGCACC	.	25.0	9.0	29.0	0.0	.	Atlas-SNP
MAFB	9935	hgsc.bcm.edu	37	20	39317483	39317483	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	MAFB-846	NM_005461	exon1	c.C8A	p.A3E	AGCTCCGCGGCCA	.	66.0	4.0	11.0	0.0	.	Atlas-SNP
SOGA1	140710	hgsc.bcm.edu	37	20	35422018	35422020	+	In_Frame_Del	DEL	GTT	GTT	-	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	GTT	GTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	.	NM_080627	exon14	c.4466_4468del	p.1489_1490del	.	.	67.0	13.0	76.0	0.0	.	Atlas-Indel
HIC2	23119	hgsc.bcm.edu	37	22	21800327	21800327	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	HIC2-703	NM_015094	exon3	c.G1143A	p.G381G	TAGTGGGGCTGGC	.	19.0	5.0	21.0	0.0	.	Atlas-SNP
CABIN1	23523	hgsc.bcm.edu	37	22	24487724	24487724	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	CABIN1-94	NM_001199281	exon24	c.A3713G	p.H1238R	ACCTGCACGAGGA	.	195.0	38.0	211.0	0.0	.	Atlas-SNP
SEZ6L	23544	hgsc.bcm.edu	37	22	26707835	26707835	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	SEZ6L-95	NM_001184776	exon8	c.G1783A	p.D595N	ACCTGCGACCCCG	.	118.0	33.0	172.0	0.0	.	Atlas-SNP
XDH	7498	hgsc.bcm.edu	37	2	31628802	31628802	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	XDH-158	NM_000379	exon2	c.C71T	p.T24I	AGGGTTGTCTCTG	.	96.0	14.0	91.0	0.0	.	Atlas-SNP
CCDC88A	55704	hgsc.bcm.edu	37	2	55566683	55566683	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	CCDC88A-94	NM_001254943	exon13	c.C1435G	p.L479V	TCCGAAGCTCTTC	.	53.0	13.0	38.0	0.0	.	Atlas-SNP
ARHGAP15	55843	hgsc.bcm.edu	37	2	144381828	144381828	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	ARHGAP15-653	NM_018460	exon12	c.A1130G	p.E377G	TTGTGGAAGCGAT	.	118.0	13.0	73.0	0.0	.	Atlas-SNP
STAB1	23166	hgsc.bcm.edu	37	3	52554031	52554031	+	Silent	SNP	C	C	T	rs145377358		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	STAB1-139	NM_015136	exon51	c.C5307T	p.A1769A	AGACGCCGCCTTT	.	149.0	26.0	162.0	0.0	C|1.000;T|0.000	Atlas-SNP
PRRT3	285368	hgsc.bcm.edu	37	3	9991595	9991596	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	PRRT3-90	NM_207351	exon2	c.205_206del	p.69_69del	.	.	82.0	14.0	91.0	0.0	.	Atlas-Indel
PCDH7	5099	hgsc.bcm.edu	37	4	30726021	30726021	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	PCDH7-229	NM_032456	exon1	c.G2977A	p.A993T	GACCTGGCAAGGC	.	105.0	9.0	84.0	0.0	.	Atlas-SNP
DTHD1	401124	hgsc.bcm.edu	37	4	36345151	36345151	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	DTHD1-46	NM_001170700	exon9	c.G2051A	p.W684X	TCCATTGGCTGGC	.	75.0	18.0	60.0	0.0	.	Atlas-SNP
POLR2B	5431	hgsc.bcm.edu	37	4	57889711	57889711	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	POLR2B-92	NM_000938	exon19	c.C2731A	p.L911I	GTAACTCTCAATC	.	78.0	13.0	74.0	0.0	.	Atlas-SNP
ADH6	130	hgsc.bcm.edu	37	4	100131302	100131302	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	ADH6-228	NM_000672	exon5	c.G504A	p.E168E	TACTTTCTCTAGA	.	88.0	17.0	63.0	0.0	.	Atlas-SNP
SLC39A8	64116	hgsc.bcm.edu	37	4	103180638	103180638	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	SLC39A8-90	NM_001135147	exon10	c.C1300G	p.Q434E	GAAGTTGAGATTT	.	73.0	19.0	75.0	0.0	.	Atlas-SNP
DNAH5	1767	hgsc.bcm.edu	37	5	13792259	13792259	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	DNAH5-182	NM_001369	exon50	c.A8292G	p.T2764T	CAATTTTGTCACA	.	82.0	5.0	57.0	0.0	.	Atlas-SNP
RAI14	26064	hgsc.bcm.edu	37	5	34823555	34823555	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	RAI14-91	NM_001145522	exon14	c.G1521A	p.K507K	GCTAAAGCAGGAT	.	117.0	18.0	90.0	0.0	.	Atlas-SNP
ADAMTS19	171019	hgsc.bcm.edu	37	5	128977578	128977578	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	ADAMTS19-295	NM_133638	exon11	c.C1779G	p.C593W	ATGGTGCAAGGTA	.	161.0	37.0	104.0	0.0	.	Atlas-SNP
HIST1H1A	3024	hgsc.bcm.edu	37	6	26017333	26017333	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	HIST1H1A-92	NM_005325	exon1	c.G628A	p.A210T	GTGCCGCTTTCTT	.	135.0	20.0	102.0	0.0	.	Atlas-SNP
NKAPL	222698	hgsc.bcm.edu	37	6	28227192	28227192	+	Missense_Mutation	SNP	G	G	A	rs144318583	alternate_allele	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	NKAPL-70	NM_001007531	exon1	c.G43A	p.G15S	ATCGTGGGCTCTC	.	194.0	46.0	133.0	0.0	G|1.000;T|0.000	Atlas-SNP
GPNMB	10457	hgsc.bcm.edu	37	7	23313809	23313809	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	GPNMB-580	NM_001005340	exon11	c.T1685C	p.L562P	ATCCGCTACTCAA	.	44.0	11.0	51.0	0.0	.	Atlas-SNP
SP8	221833	hgsc.bcm.edu	37	7	20824941	20824943	+	In_Frame_Del	DEL	GCC	GCC	-	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	GCC	GCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	SP8-91	NM_182700	exon2	c.494_496del	p.165_166del	.	.	48.0	17.0	8.0	0.0	.	Atlas-Indel
SLC20A2	6575	hgsc.bcm.edu	37	8	42317494	42317494	+	Missense_Mutation	SNP	T	T	C	rs142888552	byfrequency	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	SLC20A2-92	NM_006749	exon5	c.A533G	p.N178S	AGGCCATTGGGAA	.	106.0	27.0	117.0	0.0	T|0.999;C|0.001	Atlas-SNP
HDHD3	81932	hgsc.bcm.edu	37	9	116135916	116135916	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	HDHD3-90	NM_031219	exon2	c.C719T	p.A240V	TCAAGGGCAGGCA	.	58.0	16.0	53.0	0.0	.	Atlas-SNP
SAT1	6303	hgsc.bcm.edu	37	X	23803894	23803894	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	SAT1-554	NM_002970	exon6	c.C437T	p.S146F	GTGCTTCTGATCT	.	301.0	63.0	332.0	0.0	.	Atlas-SNP
ZDHHC15	158866	hgsc.bcm.edu	37	X	74649034	74649034	+	Splice_Site	SNP	C	C	G	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	ZDHHC15-132	NM_001146256	exon7	c.456-1G>C	.	TTAACCCTAAAAA	.	201.0	31.0	187.0	0.0	.	Atlas-SNP
CENPI	2491	hgsc.bcm.edu	37	X	100400095	100400095	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	CENPI-130	NM_006733	exon16	c.G1608A	p.L536L	TAAACTGATCCAC	.	98.0	25.0	141.0	0.0	.	Atlas-SNP
NRK	203447	hgsc.bcm.edu	37	X	105142618	105142618	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	NRK-630	NM_198465	exon8	c.A622G	p.R208G	AATGGAAGAAGGA	.	131.0	28.0	103.0	0.0	.	Atlas-SNP
