Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Algorithm
PTCHD3	374308	hgsc.bcm.edu	37	10	27702894	27702923	+	In_Frame_Del	DEL	GGGGTGCATCGTCCAGCTCCAGCGGCAGGC	GGGGTGCATCGTCCAGCTCCAGCGGCAGGC	-	novel		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	GGGGTGCATCGTCCAGCTCCAGCGGCAGGC	GGGGTGCATCGTCCAGCTCCAGCGGCAGGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	.	PTCHD3-94	NM_001034842	exon1	c.258_287del	p.86_96del	.	.	65.0	13.0	6.0	0.0	.	Atlas-Indel
KRTAP5-10	387273	hgsc.bcm.edu	37	11	71276876	71276876	+	Silent	SNP	A	A	G	rs12788123		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	.	KRTAP5-10-91	NM_001012710	exon1	c.A243G	p.K81K	CTCCAAAGGGGGC	.	40.0	7.0	25.0	0.0	A|0.998;G|0.002	Atlas-SNP
ZNF705A	440077	hgsc.bcm.edu	37	12	8329841	8329841	+	Missense_Mutation	SNP	C	C	T	rs145286690	byfrequency	TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	.	ZNF705A-90	NM_001004328	exon5	c.C565T	p.R189W	CTTAGACGGCACA	.	221.0	81.0	157.0	0.0	C|1.000;T|0.000	Atlas-SNP
KLRC2	3822	hgsc.bcm.edu	37	12	10584764	10584764	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	.	KLRC2-514	NM_002260	exon5	c.G525A	p.V175V	ACGAAACACACCA	.	138.0	15.0	169.0	0.0	.	Atlas-SNP
USP31	57478	hgsc.bcm.edu	37	16	23079691	23079691	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	.	USP31-663	NM_020718	exon16	c.C3735A	p.G1245G	TGTCTTGCCAAGA	.	75.0	6.0	53.0	0.0	.	Atlas-SNP
OMG	4974	hgsc.bcm.edu	37	17	29622398	29622398	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	.	OMG-493	NM_002544	exon2	c.C952G	p.L318V	TGCTTAGAGTGGC	.	235.0	32.0	159.0	0.0	.	Atlas-SNP
KRTAP9-1	728318	hgsc.bcm.edu	37	17	39346595	39346595	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	.	.	NM_001190460	exon1	c.T457A	p.C153S	CCCACCTGCTGTG	.	129.0	13.0	111.0	0.0	.	Atlas-SNP
L1TD1	54596	hgsc.bcm.edu	37	1	62675664	62675664	+	Silent	SNP	G	G	A	rs200931139		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	.	L1TD1-92	NM_019079	exon4	c.G1218A	p.E406E	GGAGGAGGAGGAA	.	166.0	22.0	106.0	0.0	.	Atlas-SNP
ATP1A2	477	hgsc.bcm.edu	37	1	160105320	160105320	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	.	ATP1A2-518	NM_000702	exon16	c.G2212A	p.V738I	TCTGACGTCTCTA	.	418.0	60.0	315.0	0.0	.	Atlas-SNP
ECEL1	9427	hgsc.bcm.edu	37	2	233347170	233347170	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	.	ECEL1-90	NM_004826	exon12	c.C1754T	p.A585V	ATGCCCGCGGGGA	.	164.0	20.0	129.0	0.0	.	Atlas-SNP
SACM1L	22908	hgsc.bcm.edu	37	3	45751105	45751105	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	.	SACM1L-91	NM_014016	exon5	c.G449T	p.S150I	ACACTAGTCCTGA	.	71.0	4.0	129.0	0.0	.	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	37	3	195508187	195508187	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	.	MUC4-90	NM_018406	exon2	c.G10264A	p.A3422T	GGGTGGCGTGACC	.	46.0	8.0	36.0	0.0	.	Atlas-SNP
HLA-B	3106	hgsc.bcm.edu	37	6	31324599	31324599	+	Missense_Mutation	SNP	T	T	G	rs1050538	byfrequency	TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	.	HLA-B-90	NM_005514	exon2	c.A209C	p.E70A	CGCGGCTCCTCTC	.	109.0	20.0	60.0	0.0	T|0.972;G|0.028	Atlas-SNP
MTHFD1L	25902	hgsc.bcm.edu	37	6	151293139	151293139	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	.	MTHFD1L-292	NM_015440	exon20	c.T2070C	p.S690S	CAACTCTTCAGTG	.	115.0	14.0	102.0	0.0	.	Atlas-SNP
ATXN1	6310	hgsc.bcm.edu	37	6	16327909	16327910	+	In_Frame_Ins	INS	-	-	TGC	rs71806515		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	.	ATXN1-93	NM_000332	exon8	c.633_634insGCA	p.H211delinsQH	.	.	52.0	39.0	12.0	0.0	.	Atlas-Indel
SLC26A3	1811	hgsc.bcm.edu	37	7	107408290	107408290	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	.	SLC26A3-94	NM_000111	exon19	c.T2126G	p.F709C	AAGAAAAATATTG	.	92.0	20.0	118.0	0.0	.	Atlas-SNP
DCAF8L2	347442	hgsc.bcm.edu	37	X	27765408	27765408	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	.	DCAF8L2-42	NM_001136533	exon1	c.G396A	p.E132E	GGAGGAGGAGGAG	.	53.0	6.0	32.0	0.0	.	Atlas-SNP
MECP2	4204	hgsc.bcm.edu	37	X	153295874	153295874	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	.	MECP2-226	NM_004992	exon4	c.C1405T	p.P469S	TGTTTGGCCTTGG	.	188.0	44.0	152.0	0.0	.	Atlas-SNP
